RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16582
(109 letters)
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 66.7 bits (162), Expect = 2e-14
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSK 51
+ F RG N+LVAT V EEG+D+ +LV+ ++P +Q +
Sbjct: 410 LILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRR 457
Score = 29.0 bits (64), Expect = 0.27
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 44 TRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPKINRLLQLLRRY---NPDQRTIIF 100
++ + + K + + + + PK+++L +++R + + I+F
Sbjct: 308 AKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVF 367
Query: 101 CQRRAT 106
R T
Sbjct: 368 TNYRET 373
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 66.5 bits (161), Expect = 2e-14
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 MDVQTMLSF-NRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ +F G NIL+AT V +EGIDI CNLVI ++ + +Q++
Sbjct: 448 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 500
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 64.2 bits (155), Expect = 2e-13
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 4 QTMLSFNRGITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSK 51
+ +F N +L+AT V +EGIDI CNLV+ ++ + +Q +
Sbjct: 443 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 491
Score = 24.9 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 76 YNSPKINRLLQLLR---RYNPDQRTIIFCQRRAT 106
+PK+ L+ +L RYNP RT++F + RA
Sbjct: 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 63.0 bits (152), Expect = 3e-13
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSK 51
G NIL+AT V +EGIDI CNLVI ++ + +Q++
Sbjct: 448 RASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTR 490
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 63.0 bits (152), Expect = 4e-13
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 4 QTMLSFNRGITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSK 51
+ +F N +L+AT V +EGIDI CNLV+ ++ + +Q +
Sbjct: 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732
Score = 26.1 bits (56), Expect = 3.2
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 42 QHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPKINRLLQLLRRY---NPDQRTI 98
+ ++ ++ + K ++ + + +PK+ L+ +L NP RT+
Sbjct: 576 TNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 635
Query: 99 IFCQRRAT 106
+F + RA
Sbjct: 636 LFAKTRAL 643
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 58.8 bits (141), Expect = 1e-11
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 4 QTMLSFNRGITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSK 51
+ +F N +L+AT V +EGIDI CNLV+ ++ + +Q +
Sbjct: 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 42 QHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPKINRLLQLLRRY---NPDQRTI 98
+ ++ ++ + K ++ + + +PK+ L+ +L NP RT+
Sbjct: 576 TNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 635
Query: 99 IFCQRRAT 106
+F + RA
Sbjct: 636 LFAKTRAL 643
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 56.0 bits (136), Expect = 9e-11
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
M F G + +L++TDV G+D+ +L+I +D P + Y+
Sbjct: 317 SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 361
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 55.6 bits (135), Expect = 1e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
M F G + +L+ TD+L GID+Q +LVI +D P + +Y+
Sbjct: 321 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYI 365
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
M F G + IL++TD+L GID+Q +LVI +D P + +Y+
Sbjct: 300 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 54.9 bits (133), Expect = 2e-10
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
F ILVAT++ G+DI+ N+ +D P+ + +Y+
Sbjct: 291 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 54.9 bits (133), Expect = 2e-10
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ F +G LV +D+L GIDIQ+ N+VI FD P+ +Y+
Sbjct: 299 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 343
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 52.9 bits (128), Expect = 3e-10
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
M F RG LVATDV GIDI++ +LVI +D P SYV
Sbjct: 76 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYV 120
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 52.6 bits (127), Expect = 5e-10
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
F ILVAT++ G+DI+ N+ +D P+ + +Y+
Sbjct: 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 116
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 51.0 bits (123), Expect = 2e-09
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ + G N+LVATDV GIDI + V FD P+ +Y+
Sbjct: 71 EAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYL 115
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 52.2 bits (126), Expect = 2e-09
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP------QHTRSYV 48
M SF G + +LV T+V+ GID+ NLV+ +D P ++Y+
Sbjct: 398 AIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYL 448
Score = 25.6 bits (57), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQRRAT 106
K N L++L Q +IIFC+++ T
Sbjct: 344 KYNVLVELYGLLTIGQ-SIIFCKKKDT 369
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 51.0 bits (123), Expect = 2e-09
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
M F G + IL++TD+L GID+Q +LVI +D P + +Y+
Sbjct: 71 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 115
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 51.3 bits (123), Expect = 4e-09
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ F + + ILV TDV G+D + + V++ P +Y+
Sbjct: 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 427
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 50.4 bits (121), Expect = 5e-09
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ + +F +G +LVATDV G+DI +LV+ + P +Y
Sbjct: 72 RVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQ 116
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 50.5 bits (121), Expect = 7e-09
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ M +F +G +LVATDV G+DI +LV+ + P +Y
Sbjct: 69 RVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQ 113
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 50.6 bits (121), Expect = 8e-09
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ F + + ILV TDV G+D + + V++ P +Y+
Sbjct: 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 376
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 49.8 bits (120), Expect = 1e-08
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ + F + IL+ATDV+ GID+ N VI + PQ+ SY+
Sbjct: 279 KVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYM 323
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 49.4 bits (119), Expect = 2e-08
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ + +F G ++L+ TDV G+DI VI FD PQ R+Y+
Sbjct: 257 RNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYI 301
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 49.6 bits (119), Expect = 2e-08
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ 42
+ F G +LV T+V GID++ ++VI FD P
Sbjct: 374 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV 412
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ 42
+ F G +LV T+V GID++ ++VI FD P
Sbjct: 307 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV 345
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 48.4 bits (116), Expect = 2e-08
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP 41
+ F G +L+ T+V GID++ +V+ FD P
Sbjct: 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 49.1 bits (118), Expect = 3e-08
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTR------SYV 48
+ + F G + +L+ T+VL GIDI + ++V+ +D P +Y+
Sbjct: 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYI 334
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
Q + F G +L+AT V G+DI++ VI +D P YV
Sbjct: 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYV 385
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQRRAT 106
K ++L+++L TI+F + +
Sbjct: 288 KRSKLIEILS--EQADGTIVFVETKRG 312
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 48.3 bits (116), Expect = 4e-08
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ + F G + ILVAT V G+DI + VI FD P YV
Sbjct: 317 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 361
Score = 34.1 bits (79), Expect = 0.004
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQRRAT 106
K + LL LL D T++F + +
Sbjct: 262 KRSFLLDLLNATGKDSLTLVFVETKKG 288
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 46.9 bits (112), Expect = 8e-08
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 8 SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+F G ++LVATDV +G+D + VI +D P+ +YV
Sbjct: 99 AFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYV 139
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 45.7 bits (109), Expect = 2e-07
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
+ + F G + ILVAT V G+DI + VI FD P YV
Sbjct: 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 131
Score = 32.9 bits (76), Expect = 0.009
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQR 103
K + LL LL D T++F +
Sbjct: 32 KRSFLLDLLNATGKDSLTLVFVET 55
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 39.3 bits (92), Expect = 7e-05
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 4 QTMLSFNRGITNILVATDVLEE----GIDIQSC-NLVIKFDPPQH--TRSYVQSKAFTVV 56
+ F G NIL+ G+D+ VI + P +Y+Q+ +
Sbjct: 288 KNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSR 347
Query: 57 RHKA---EQILSQYPKSERYLQYNSPKINRLLQ 86
+ + + + E + ++ + +
Sbjct: 348 ILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAE 380
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVI 36
+ M F+ N+LV T ++E GIDI + N +I
Sbjct: 855 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.002
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 39/110 (35%)
Query: 6 MLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ----SKAFTVVRHKAE 61
MLS +T + +++ ++ + +L P + + +K
Sbjct: 338 MLSI-SNLT-----QEQVQDYVNKTNSHL------PAGKQVEISLVNGAKNL-------- 377
Query: 62 QILSQYPKSERYLQYNSPKINRLLQLLRRY----NPDQRTIIFCQRRATI 107
++S P+S L L LR+ DQ I F +R+
Sbjct: 378 -VVSGPPQS---LY-------GLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Score = 28.1 bits (62), Expect = 0.59
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 17 LVATDVLEEGIDIQSCNLVIKFDPPQHTR--SYVQSKAFTVVRHKAEQILSQ 66
L+ D+++ + + ++ I P T S ++ + ++ + I+
Sbjct: 438 LINKDLVKNNVSFNAKDIQI---PVYDTFDGSDLRVLSGSISERIVDCIIRL 486
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 33.6 bits (77), Expect = 0.006
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVI 36
F G +V++ VL+EGID+ N+ +
Sbjct: 390 FRTGRFRAIVSSQVLDEGIDVPDANVGV 417
Score = 26.7 bits (59), Expect = 1.7
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 59 KAEQILSQYPKSERYLQYNSPKINRLLQLLRRYNPDQRTIIFCQRRATI 107
+A + L + ++ R + KI +L ++L R+ D + IIF + +
Sbjct: 315 RAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD-KIIIFTRHNELV 362
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 33.9 bits (77), Expect = 0.006
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 16 ILVATDVLEEGIDIQSCNLVIKFDPP 41
+L+ +++ EG + Q + ++ FD P
Sbjct: 559 VLLCSEIGSEGRNFQFASHMVMFDLP 584
Score = 31.6 bits (71), Expect = 0.040
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 61 EQILSQYPKSERYLQYNSPKINRLLQLLRRYNPDQRTIIFCQRRAT 106
E+I ++ P++ L+ L + Q+ ++ C + AT
Sbjct: 471 ERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAAT 515
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 32.6 bits (75), Expect = 0.014
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 10 NRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHT--RSYVQSKAFT---------VVRH 58
+ G I++ + + G I D P+H R V S +R
Sbjct: 86 DAGYGGIIIDDGIQKGGDGGLDLPNFIAMDRPRHDEQRKAV-SPIVAPANLAALEGTIRE 144
Query: 59 KAEQILSQYPKSER 72
+ + L P E
Sbjct: 145 RVSKTLDGLPVGEE 158
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 32.2 bits (74), Expect = 0.023
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDI 29
+ ML F G +ILV+T V+E GID+
Sbjct: 630 RVMLEFAEGRYDILVSTTVIEVGIDV 655
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 31.5 bits (72), Expect = 0.036
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 2 DVQTML------SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHT--RSYVQSKAF 53
DV+ + S D+ E I++Q + + D P HT R + S+ F
Sbjct: 78 DVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRFVM-LNMDAPHHTRLRKII-SRGF 135
Query: 54 T---------VVRHKAEQILSQYPKSER 72
T ++ +A++I ++ +
Sbjct: 136 TPRAVGRLHDELQERAQKIAAEAAAAGS 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.095
Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 33/134 (24%)
Query: 1 MDV--QTML-SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRS----YVQSKAF 53
++ + +L + + +T+ L A +D + + P + +S Y+ +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTPDE-VKSLLLKYLDCRPQ 316
Query: 54 TVVRHKAEQI-----------LSQYP-KSERYLQYNSPKINRLLQL-LRRYNP-DQRTI- 98
+ + + + + N K+ +++ L P + R +
Sbjct: 317 DL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 99 ----IFCQRRATIP 108
+F A IP
Sbjct: 376 DRLSVF-PPSAHIP 388
Score = 28.7 bits (63), Expect = 0.45
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 46 SYVQSKAFTVVRHKAEQ---------ILSQYPKSERYLQYNSPKINRLLQLLRRYNPDQR 96
+++ K +RH + L Q + Y+ N PK RL+ + + P
Sbjct: 501 RFLEQK----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 97 TIIFCQRRATI 107
+ C + +
Sbjct: 557 ENLICSKYTDL 567
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 29.3 bits (66), Expect = 0.23
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVI 36
IL + +L G+D +C V+
Sbjct: 495 LETSTPVILTTSQLLTTGVDAPTCKNVV 522
Score = 27.4 bits (61), Expect = 0.90
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 81 INRLLQLLRRYNPDQRTIIFCQRRA 105
L ++R + +TI+FC +
Sbjct: 426 AKHLTDFMKRTDRFAKTIVFCVDQE 450
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.27
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 8/31 (25%)
Query: 80 KINRLLQLLRRYNPDQR---TIIFCQRRATI 107
+ +L L+ Y D I +AT+
Sbjct: 21 ALKKLQASLKLYADDSAPALAI-----KATM 46
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 28.3 bits (64), Expect = 0.40
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHT--RSYVQSKAFTVVRHK 59
D + S G + L + DI + ++ DPP H R+ + AF
Sbjct: 35 DHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLHDELRNLT-ADAFNPSNLP 93
Query: 60 AEQI 63
+ +
Sbjct: 94 VDFV 97
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 28.0 bits (63), Expect = 0.51
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 6/59 (10%)
Query: 2 DVQTMLS---FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHT--RSYVQSKAFTV 55
+ + G ++ E + + + D H R + FT
Sbjct: 64 EADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADHRRLRGLA-THPFTP 121
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 27.9 bits (63), Expect = 0.68
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 12/44 (27%)
Query: 39 DPPQHT--RSYVQSKAFT---------VVRHKAEQILSQYPKSE 71
DPP H RS + F+ +R +L E
Sbjct: 72 DPPLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSIDPRE 114
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 27.6 bits (62), Expect = 0.81
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 39 DPPQHT--RSYVQSKAFT 54
DPP+H R V S AFT
Sbjct: 91 DPPEHRALRKVV-SSAFT 107
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 27.7 bits (62), Expect = 0.86
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 36 IKFDPPQHT--RSYVQSKAFTVVR 57
K DPP+HT R + K + +
Sbjct: 102 TKMDPPEHTPYRKAL-DKGLNLAK 124
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 27.6 bits (62), Expect = 0.88
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 39 DPPQHT--RSYVQSKAFTV---------VRHKAEQIL 64
D P H R V + FT + + ++
Sbjct: 79 DDPAHLLRRKLV-NAGFTRKRVKDKEASIAALCDTLI 114
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 27.3 bits (61), Expect = 0.91
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 12/44 (27%)
Query: 39 DPPQHT--RSYVQSKAFT---------VVRHKAEQILSQYPKSE 71
D P+H RS V S+AFT VR +A +++S +
Sbjct: 121 DDPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANN 163
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 27.3 bits (61), Expect = 0.92
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 36 IKFDPPQHT--RSYVQSKAFTVVR 57
K DPP+HT R + K +
Sbjct: 103 TKLDPPEHTPYRKAI-DKGLNLAE 125
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 27.2 bits (61), Expect = 0.95
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 39 DPPQHT--RSYVQSKAFT 54
DPP HT R V S+ FT
Sbjct: 100 DPPVHTEFRKLV-SRGFT 116
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 27.3 bits (60), Expect = 0.99
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 28 DIQSCNLVIKFDP-PQHTRSYVQSKAFTVVRHKAEQILSQYPKS-----ERYLQYNSPKI 81
+ Q ++ D +TR + K F V K + +YP E Y N K
Sbjct: 260 NFQGNAVINFTDANVPYTRII-EHKHFDYVETKHTVVTKEYPLEWKVGDEPYYPVNDNKN 318
Query: 82 NRLLQLLRRYNPDQRTIIFCQRRAT 106
L + R + +IF R A
Sbjct: 319 MELFKKYRELASREDKVIFGGRLAE 343
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 27.3 bits (61), Expect = 1.0
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 36 IKFDPPQHT--RSYVQSKAFTVVR 57
DPP+ R+ ++ +
Sbjct: 102 TSMDPPEQRQFRALA-NQVVGMPV 124
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 27.2 bits (61), Expect = 1.0
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP HT R+ + SK +
Sbjct: 103 DPPAHTRTRAVL-SKVLSP 120
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 27.3 bits (61), Expect = 1.0
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 12/37 (32%)
Query: 39 DPPQHT--RSYVQSKAFTV---------VRHKAEQIL 64
D P+H R F +R A + +
Sbjct: 128 DAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAI 163
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 12/37 (32%)
Query: 39 DPPQHT--RSYVQSKAFTV---------VRHKAEQIL 64
D P+H R + F + + ++
Sbjct: 51 DNPEHKEFRDIS-APYFLPSKINDYKDFIEETSNDLI 86
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 27.2 bits (61), Expect = 1.1
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 2 DVQTMLS---FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHT--RSYVQSKAFTV 55
DV+ +L F R V + ++++ D P H R V AF+
Sbjct: 43 DVRAVLGDERFARTGIRRFWTDLVGPGLLAEIVGDIILFQDEPDHGRLRGVV-GPAFSP 100
>2gx8_A NIF3-related protein; structural genomics, unknown function,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: EPE; 2.20A {Bacillus
cereus} SCOP: c.135.1.1
Length = 397
Score = 27.4 bits (60), Expect = 1.1
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 8 SFNRGITNILVATDVLEEGID---IQSCNLVIKFDPP 41
+ N+ + ++L+A DV EE +D N++I P
Sbjct: 59 ALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPL 95
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 27.2 bits (61), Expect = 1.1
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP HT RS + + F+
Sbjct: 102 DPPHHTELRSLL-TTEFSP 119
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 27.3 bits (61), Expect = 1.1
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 39 DPPQHT--RSYVQSKAFT---------VVRHKAEQIL 64
DPP HT R F +R A+ +
Sbjct: 106 DPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASV 141
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 26.9 bits (59), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 37 KFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPK 80
KFD ++ + +Q K +V++ Q++ Q+P E +L PK
Sbjct: 4 KFDEKENVSNCIQLKT-SVIKGIKNQLIEQFPGIEPWLNQIMPK 46
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 27.3 bits (61), Expect = 1.2
Identities = 4/18 (22%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 39 DPPQHT--RSYVQSKAFT 54
+H+ R V ++F
Sbjct: 117 HGKEHSAKRRIV-VRSFI 133
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 27.2 bits (61), Expect = 1.2
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D +H R+ V K
Sbjct: 90 DGAEHKAFRTPV-MKGLASRF 109
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 26.9 bits (60), Expect = 1.3
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 12/45 (26%)
Query: 39 DPPQHT--RSYVQSKAFTV---------VRHKAEQILSQYPKSER 72
+ QH R V + VR + +L + E
Sbjct: 110 EHEQHRKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLDGEV 153
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 26.9 bits (60), Expect = 1.3
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP HT R V SKAF
Sbjct: 101 DPPDHTRLRGLV-SKAFAP 118
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 26.8 bits (60), Expect = 1.4
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 39 DPPQHT--RSYVQSKAFT 54
D P H R V +K F+
Sbjct: 88 DDPVHKKYRQLV-AKPFS 104
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 26.8 bits (60), Expect = 1.4
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
P H R V + +FT
Sbjct: 99 PPEDHARVRKLV-NPSFTS 116
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 26.8 bits (60), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D P+HT R + +K FTV R
Sbjct: 91 DEPEHTSDRKLL-AKEFTVRR 110
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 26.8 bits (60), Expect = 1.4
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
+ P H R+ S AFT
Sbjct: 84 NQPDHRRLRTLA-SGAFTPRT 103
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 26.9 bits (60), Expect = 1.5
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP+HT R + + FT+ +
Sbjct: 92 DPPEHTRLRRKL-TPGFTLRK 111
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP+H RS V FT
Sbjct: 91 DPPEHMHQRSMV-EPTFTP 108
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 26.8 bits (60), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP+HT R + + FTV R
Sbjct: 101 DPPEHTRLRKML-TPEFTVRR 120
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 26.8 bits (60), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP+H+ R V KAFT R
Sbjct: 107 DPPEHSRLRRLV-VKAFTARR 126
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP HT R V + A++ R
Sbjct: 83 DPPDHTRLRRTV-APAYSARR 102
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 26.8 bits (60), Expect = 1.6
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP+H R FTV
Sbjct: 99 DPPEHGTRRRMT-ISEFTV 116
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 26.8 bits (60), Expect = 1.6
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D +H+ R V FTV R
Sbjct: 99 DGAEHSAARRPV-IGEFTVKR 118
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 26.8 bits (60), Expect = 1.6
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D P+HT R + AFTV R
Sbjct: 103 DAPEHTRYRRML-LPAFTVRR 122
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 26.9 bits (60), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP+HT R V ++ FT+ R
Sbjct: 116 DPPRHTRLRKLV-AREFTMRR 135
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 26.8 bits (60), Expect = 1.6
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP HT R +K FT
Sbjct: 83 DPPHHTVLRRQT-NKWFTP 100
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 26.8 bits (60), Expect = 1.6
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D P H R + +F V R
Sbjct: 98 DDPVHARQRRML-IPSFGVKR 117
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 26.5 bits (59), Expect = 1.7
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D P H R V + AFTV
Sbjct: 100 DQPDHNRLRRAV-AGAFTVGA 119
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 26.4 bits (59), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
DPP HT R V S+ FTV
Sbjct: 94 DPPTHTRLRKLV-SQEFTV 111
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 26.4 bits (59), Expect = 2.0
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP HT R V + AFT
Sbjct: 97 DPPDHTRLRRSV-AAAFTARG 116
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 26.4 bits (59), Expect = 2.0
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
DPP HT R V ++FTV R
Sbjct: 91 DPPDHTRLRKLV-GRSFTVRR 110
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 26.5 bits (59), Expect = 2.0
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
P H R V + AF+ R
Sbjct: 91 YGPNHRKLRRLV-APAFSARR 110
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 26.4 bits (59), Expect = 2.1
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
D +H R+ V ++A TV R
Sbjct: 96 DGAEHRRLRTLV-AQALTVRR 115
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structura genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 26.6 bits (58), Expect = 2.3
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 62 QILSQYPKSERYLQYNSPKINRLLQLLRRYNPD 94
L Y E ++++ + +R + ++P
Sbjct: 478 LYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPM 510
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 26.1 bits (58), Expect = 2.4
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 39 DPPQHT--RSYVQSKAFTVVR 57
QH R + + F+ R
Sbjct: 101 GRRQHAETRRLL-TPLFSARR 120
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 25.7 bits (57), Expect = 3.8
Identities = 5/19 (26%), Positives = 5/19 (26%), Gaps = 3/19 (15%)
Query: 39 DPPQHT--RSYVQSKAFTV 55
R V KA T
Sbjct: 87 GNIADAGLRKAV-MKAITP 104
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 25.4 bits (56), Expect = 4.3
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 84 LLQLLRR--YNPDQRTIIF 100
L LLR + T++
Sbjct: 34 LEDLLRAVSFKQGSDTLVA 52
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, chaperone;
HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Length = 150
Score = 24.9 bits (55), Expect = 5.4
Identities = 5/22 (22%), Positives = 12/22 (54%), Gaps = 7/22 (31%)
Query: 15 NILVATD-------VLEEGIDI 29
+IL+A D V+++ ++
Sbjct: 8 HILLAVDFSSEDSQVVQKVRNL 29
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein;
HET: ATP; 1.90A {Halomonas elongata}
Length = 147
Score = 24.5 bits (54), Expect = 7.5
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 7/22 (31%)
Query: 15 NILVATD-------VLEEGIDI 29
I+V D LE+G+ +
Sbjct: 4 RIMVPVDGSKGAVKALEKGVGL 25
>3s3t_A Nucleotide-binding protein, universal stress PROT family;
structural genomics, PSI-biology, midwest center for
structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus
plantarum}
Length = 146
Score = 24.5 bits (54), Expect = 8.0
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 7/22 (31%)
Query: 15 NILVATD-------VLEEGIDI 29
NILV D E ++I
Sbjct: 7 NILVPVDSSDAAQAAFTEAVNI 28
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC
AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Length = 455
Score = 24.6 bits (53), Expect = 8.3
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 66 QYPKSERYLQYNSPKINRLLQLLRRYNPD 94
++P+ R ++ +P+ NR + YN
Sbjct: 180 EFPRGFRVFEFEAPRENRFIGSADDYNTT 208
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 24.6 bits (54), Expect = 8.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 KSERYLQYNSPKINRLLQLLRRYNPDQRTII 99
K E + + S RLL L+ +Y+ +R
Sbjct: 116 KGEEWKRKESGDHQRLLLLVEKYHMQERVDY 146
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A
{Pyrococcus horikoshii} SCOP: c.72.1.3
Length = 457
Score = 24.7 bits (53), Expect = 9.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 66 QYPKSERYLQYNSPKINRLLQLLRRYNP 93
++P++ + L + +P+ NR + YNP
Sbjct: 183 EFPRNFKVLDFEAPRENRFIGAADDYNP 210
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 24.3 bits (53), Expect = 9.3
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 14/68 (20%)
Query: 29 IQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQY------NSPKIN 82
I + V+K D + V KA A +++ L N+ I
Sbjct: 108 IDHASKVLKIDK-----NNV--KALY-KLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159
Query: 83 RLLQLLRR 90
+L
Sbjct: 160 NSYELCVN 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.394
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,610,939
Number of extensions: 82727
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 125
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)