RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16582
(109 letters)
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 46.4 bits (109), Expect = 8e-08
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
+ F RG N+LVAT V EEG+D+ +LV+ ++P +Q
Sbjct: 210 LILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ 255
Score = 26.0 bits (56), Expect = 0.90
Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 41 PQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPKINRLLQLLRRY---NPDQRT 97
+ ++ + + K + + + + PK+++L +++R + +
Sbjct: 105 YEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKI 164
Query: 98 IIFCQRRATIPR 109
I+F R T +
Sbjct: 165 IVFTNYRETAKK 176
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 40.3 bits (94), Expect = 1e-05
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 4 QTMLSFNRGITNILVATDVLEEG---IDIQSCNLVIKFDPPQHTRSYVQ 49
+++ G + ++ + + + PQ S Q
Sbjct: 87 DALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQ 135
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 37.5 bits (86), Expect = 8e-05
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQH-----TRSYVQSKAFTVVRH 58
+ + G ++LV ++L EG+DI +LV D + RS +Q+
Sbjct: 72 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
Query: 59 KAEQILSQYPKSERYLQYNSPKINRLLQLLRRYN 92
++ + ++ + R + YN
Sbjct: 132 NG-HVIMYADTITKSMEIAIQETKRRRAIQEEYN 164
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 32.4 bits (73), Expect = 0.006
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP-----PQHTRSYVQSKAFTV 55
+ G + LV ++L EG+DI +LV D + RS +Q+
Sbjct: 69 KRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG-RA 127
Query: 56 VRHKAEQILSQYPKSERYLQYNSPKINRLLQLLRRYN 92
R+ ++ + +Q + NR L YN
Sbjct: 128 ARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYN 164
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.1 bits (69), Expect = 0.015
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
M F G + +L++TDV G+D+ +L+I +D P + Y+
Sbjct: 75 SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 120
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 29.4 bits (65), Expect = 0.078
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 4 QTMLSFNRGITNILVAT----DVLEEGIDIQ-SCNLVIKFDPPQHTRSYVQSKAFTVVRH 58
F G + L+ T L G+D+ + P + +
Sbjct: 60 GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIED---IDSLSP 116
Query: 59 KAEQILSQYPKSERYLQYNSPKINRLLQLLRRYNPDQRTIIFCQRRATIPR 109
+ ++L+ ++ ++ P + R + +R Q + + R
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 167
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 27.6 bits (60), Expect = 0.23
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 15 NILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
IL+ATDV+ GID+ N VI + PQ+ SY+
Sbjct: 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMH 114
Score = 24.5 bits (52), Expect = 2.6
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQRRATIPR 109
+ L +LL+ N + ++FC+ +
Sbjct: 16 RFEALCRLLK--NKEFYGLVFCKTKRDTKE 43
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 26.6 bits (58), Expect = 0.42
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQS---CNLVIKFDPPQHTRSYVQ 49
+ ++VATD L G + PQ S Q
Sbjct: 69 LDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQ 117
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 26.9 bits (58), Expect = 0.45
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQRRATIPR 109
+++L++ ++ + II+C RA +
Sbjct: 17 PLDQLMRYVQE-QRGKSGIIYCNSRAKVED 45
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 26.8 bits (58), Expect = 0.53
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 8 SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
F G + IL++TD+L GID+Q +LVI +D P + +Y+
Sbjct: 72 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 113
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 26.0 bits (56), Expect = 0.90
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
+ + F G +V++ VL+EGID+ N+ + R Y+Q
Sbjct: 129 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQ 174
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.8 bits (55), Expect = 0.92
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 KINRLLQLLRRYNPDQRTIIFCQRRATIP 108
K +L LL +Q +IF +
Sbjct: 14 KNRKLFDLLDVLEFNQ-VVIFVKSVQRCI 41
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 24.4 bits (53), Expect = 4.7
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 6 MLSFNRGITNILVATDVLEEGIDIQSCNLV 35
M++ ++GITN+ V +DV+ +D ++
Sbjct: 330 MVNSDKGITNLHVPSDVI---VDASMPAMI 356
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 23.3 bits (50), Expect = 6.9
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 61 EQILSQYPKSERYLQ-YNSPKINRLLQLLRRYNPDQRTIIF 100
QI + + K + L + P N+L Q ++ +NP+ IIF
Sbjct: 3 AQITATFTK--KILAHLDDPDSNKLAQFVQLFNPNNCRIIF 41
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of
TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 22.5 bits (48), Expect = 8.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 81 INRLLQLLRRYNPDQRTI 98
+N L Q+L+R NP+++ I
Sbjct: 46 VNVLAQILKRLNPERKMI 63
>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 451
Score = 23.3 bits (50), Expect = 10.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 66 QYPKSERYLQYNSPKINRLLQLLRRYNP 93
++P++ + L + +P+ NR + YNP
Sbjct: 177 EFPRNFKVLDFEAPRENRFIGAADDYNP 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.394
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 389,838
Number of extensions: 15721
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 28
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)