BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16583
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
AE + NL + YD + +++AL L + +A+ WYN+ NA D+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG-----NAYYKQGDYDE 53
Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
A+ +Y++ L++ +AE + NL + YD + +++AL L+ +A+ WYN
Sbjct: 54 ---AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYN 108
Query: 579 ISH 581
+ +
Sbjct: 109 LGN 111
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 554
A+ WYN+ NA D+ A+ +Y++ L++ +AE + NL + YD
Sbjct: 1 AEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 52
Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
+ +++AL L+ +A+ WYN+ + + QG D AI+
Sbjct: 53 EAIEYYQKALE--LDPRSAEAWYNLGNA-----------------YYKQGDYDE--AIEY 91
Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657
AL +D + NL ++G + A Y Q A P
Sbjct: 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 58/131 (44%)
Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417
EA+ + Y + AI+ + AL+ P + + + +++YY+
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 418 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 477
L+ D EA +G ++ + A+ +Y++ L++ +AE + NL + YD
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 478 VVTCFERALSL 488
+ +++AL L
Sbjct: 122 AIEYYQKALEL 132
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596
AE + NL + YD + +++AL L + +A+ WYN+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA-------------- 44
Query: 597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656
+ QG D AI+ AL +D + NL ++G + A Y Q A
Sbjct: 45 ---YYKQGDYDE--AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 657 PYLYETHYN 665
P E YN
Sbjct: 100 PRSAEAWYN 108
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552
N+A+ WYN+ NA D+ A+ +Y++ L++ NAE + NL +
Sbjct: 7 NSAEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELDPNNAEAWYNLGNAYYKQGD 58
Query: 553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612
YD + +++AL L+ N A+ WYN+ + + QG D AI
Sbjct: 59 YDEAIEYYQKALE--LDPNNAEAWYNLGNA-----------------YYKQGDYDE--AI 97
Query: 613 QCLHLALSIDSSHGLSQNNLAVLEAREG 640
+ AL +D ++ ++ NL + ++G
Sbjct: 98 EYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
EA +G ++ + A+ +Y++ L++ NAE + NL + YD + +++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 486 LSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA 544
L L+ N A+ WYN+ NA D+ A+ +Y++ L++ NAE NL
Sbjct: 70 LE--LDPNNAEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELDPNNAEAKQNLG 118
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
+++YY+ L+ D EA +G ++ + A+ +Y++ L++ NAE + NL
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87
Query: 470 FYSQQYDMVVTCFERALSLALNENAA 495
+ YD + +++AL L N A
Sbjct: 88 YKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%)
Query: 350 ALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPM 409
A++ EA+ + Y + AI+ + AL+ PN + + +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 466
+++YY+ L+ D EA +G ++ + A+ +Y++ L++ NAE NL
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+AE + NL + YD + +++AL L N A+ WYN+ NA D
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELY--PNNAEAWYNLG-----NAYYKQGDYD 60
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
+ A+ +Y++ L++ NAE + NL + YD + +++AL L N A
Sbjct: 61 E---AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552
N+A+ WYN+ NA D+ A+ +Y++ L++ NAE + NL +
Sbjct: 7 NSAEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELYPNNAEAWYNLGNAYYKQGD 58
Query: 553 YDMVVTCFERALSLALNENAADVWYNISH 581
YD + +++AL L N A+ WYN+ +
Sbjct: 59 YDEAIEYYQKALELY--PNNAEAWYNLGN 85
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
EA +G ++ + A+ +Y++ L++ NAE + NL + YD + +++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 486 LSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA 544
L L N A+ WYN+ NA D+ A+ +Y++ L++ NAE NL
Sbjct: 70 LELY--PNNAEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELYPNNAEAKQNLG 118
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%)
Query: 350 ALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPM 409
A++ EA+ + Y + AI+ + AL+ YPN + + +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 466
+++YY+ L+ EA +G ++ + A+ +Y++ L++ NAE NL
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
+++YY+ L+ EA +G ++ + A+ +Y++ L++ NAE + NL
Sbjct: 28 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAY 87
Query: 470 FYSQQYDMVVTCFERALSLALNENAA 495
+ YD + +++AL L N A
Sbjct: 88 YKQGDYDEAIEYYQKALELYPNNAEA 113
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 55/328 (16%)
Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417
EA+ + VY Q AI+ R+AL P+ + +A +M +V+ Y
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 418 LKR--DATCMEA-----IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470
L+ D C+ + + +G + E A Y + ++ A ++NL C F
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALG-------RLEEAKACYLKAIETQPNFAVAWSNLG-CVF 179
Query: 471 YSQ-QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529
+Q + + + FE+A++L + N D + N+ N L + D+ A+ Y R
Sbjct: 180 NAQGEIWLAIHHFEKAVTL--DPNFLDAYINLG-----NVLKEARIFDR---AVAAYLRA 229
Query: 530 LQMGLYNAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAADVWYNISHVAIITEC 588
L + +A + NLA C +Y Q D+ + + RA+ L + D + N+++
Sbjct: 230 LSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANA------ 280
Query: 589 SPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 648
++ A C + AL + +H S NNLA ++ +G+IE A
Sbjct: 281 -------------LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 649 LQAAAASSPYLYETHYNQAVISNLVSVI 676
+ A P H SNL SV+
Sbjct: 328 YRKALEVFPEFAAAH------SNLASVL 349
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 34/172 (19%)
Query: 479 VTCFERALS-----LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533
V ERAL+ L L+ +AA +Y +V ++ +Y + ++ + + L+ G
Sbjct: 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVK----EMYKEAKDM----FEKALRAG 121
Query: 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN------------ISH 581
+ N +LF L +Q + + +RA+ L N+ A + +S
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181
Query: 582 VAIITECSPFSFSTHTSYLFIQGIS-----DTRLAIQCLHLALSIDSSHGLS 628
A +TE P H + G++ + A++ L A+ I H L+
Sbjct: 182 FAAVTEQDP----GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 27/185 (14%)
Query: 484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL 543
A + A+ EN D I ++ N LS+ ++ E AL FY + L++ A +
Sbjct: 44 EAFTKAIEENKEDA---IPYINFANLLSSV---NELERALAFYDKALELDSSAATAYYGA 97
Query: 544 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603
+ Y FE+AL + EN D++Y + V + E
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGM-ENG-DLFYMLGTVLVKLE---------------- 139
Query: 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663
+LA+ L A+ ++ + ++ + A EG ++ A + A P +
Sbjct: 140 ---QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 664 YNQAV 668
YN V
Sbjct: 197 YNAGV 201
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552
N+A+ WYN+ NA D+ A+ +Y++ L++ NAE + NL +
Sbjct: 7 NSAEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELDPNNAEAWYNLGNAYYKQGD 58
Query: 553 YDMVVTCFERALSLALNENAA 573
YD + +++AL L N A
Sbjct: 59 YDEAIEYYQKALELDPNNAEA 79
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+AE + NL + YD + +++AL L + N A+ WYN+ NA D
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG-----NAYYKQGDYD 60
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLA 544
+ A+ +Y++ L++ NAE NL
Sbjct: 61 E---AIEYYQKALELDPNNAEAKQNLG 84
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
+AE + NL + YD + +++AL L + N A+ WYN+ +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA------------- 52
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 640
+ QG D AI+ AL +D ++ ++ NL + ++G
Sbjct: 53 ----YYKQGDYDE--AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
EA +G ++ + A+ +Y++ L++ NAE + NL + YD + +++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 486 LSLALNENAA 495
L L N A
Sbjct: 70 LELDPNNAEA 79
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA 429
D IRA + L PN V + ++ + + + +++ K + D T EA
Sbjct: 21 FDGAIRAY---KKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77
Query: 430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
+G +F D+ + A+ +R + + A+ + L L ++D + +E+ +S+
Sbjct: 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC---F 482
E A +G + + + +LL YR+ LQ+ NAEL+ LA +Y M
Sbjct: 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
Query: 483 ERALSLALNE 492
++AL+L NE
Sbjct: 105 DKALALDSNE 114
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 7 APTATVDSMFYAVDHFHKRNFEKCAAI---CTELLAKNPYDKAAWTLKMRSLTSQLSVDD 63
+P +T ++ VDH+ K N C + C + P++K AW + SL + +
Sbjct: 133 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGA 192
Query: 64 LEAEEEGIADSVLDTNTIATAARPGT 89
+ E +A T +PG+
Sbjct: 193 GQFGEVWMATYNKHTKVAVKTMKPGS 218
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 112 APTATVDSMFYAVDHFHKRNFEKCAAI---CTELLAKNPYDKAAWTLKMRSLTSQLSVDD 168
+P +T ++ VDH+ K N C + C + P++K AW + SL + +
Sbjct: 133 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGA 192
Query: 169 LEAEEEGIADSVLDTNTIATAARPGT 194
+ E +A T +PG+
Sbjct: 193 GQFGEVWMATYNKHTKVAVKTMKPGS 218
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 7 APTATVDSMFYAVDHFHKRNFEKCAAI---CTELLAKNPYDKAAWTLKMRSLTSQLSVDD 63
+P +T ++ VDH+ K N C + C + P++K AW + SL + +
Sbjct: 139 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGA 198
Query: 64 LEAEEEGIADSVLDTNTIATAARPGT 89
+ E +A T +PG+
Sbjct: 199 GQFGEVWMATYNKHTKVAVKTMKPGS 224
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 112 APTATVDSMFYAVDHFHKRNFEKCAAI---CTELLAKNPYDKAAWTLKMRSLTSQLSVDD 168
+P +T ++ VDH+ K N C + C + P++K AW + SL + +
Sbjct: 139 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGA 198
Query: 169 LEAEEEGIADSVLDTNTIATAARPGT 194
+ E +A T +PG+
Sbjct: 199 GQFGEVWMATYNKHTKVAVKTMKPGS 224
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+AE + NL + Y + +++AL L + N A WYN+ + Y
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALEL--DPNNASAWYNLG----------NAYYK 55
Query: 518 QPEV--ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
Q + A+ +Y++ L++ NA+ + + Y + +++AL L N A
Sbjct: 56 QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS 511
L+M +A+L +L + S YD RA+ L ++ A +W N L
Sbjct: 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--AQLW---------NKLG 213
Query: 512 TSVYN-DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
++ N ++P+ AL Y R L + + N+A+ QYD+ RA+
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS 511
L+M +A+L +L + S YD RA+ L ++ A +W N L
Sbjct: 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--AQLW---------NKLG 213
Query: 512 TSVYN-DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
++ N ++P+ AL Y R L + + N+A+ QYD+ RA+
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|3FIK|L Chain L, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|2WWQ|L Chain L, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3OFQ|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3R8S|L Chain L, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|L Chain L, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3J19|L Chain L, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
Length = 143
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 150 KAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSR 209
K +T + ++T+++ + DL E G V+D NT+ A G ++ A V +
Sbjct: 62 KFGFTSRKAAITAEIRLSDLAKVEGG----VVDLNTLKAANIIGIQIEFAKVILAGEVTT 117
Query: 210 PRTESGRPVSGVVRPGTLASRGGTLEQ 236
P T G V+ R A+ GG +E+
Sbjct: 118 PVTVRGLRVTKGARAAIEAA-GGKIEE 143
>pdb|1P85|J Chain J, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|J Chain J, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|1VS6|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2T|L Chain L, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|L Chain L, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2J28|L Chain L, Model Of E. Coli Srp Bound To 70s Rncs
pdb|2QOV|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2VHM|L Chain L, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|L Chain L, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|L Chain L, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DF2|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|L Chain L, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3BBX|L Chain L, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3IY9|L Chain L, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
pdb|3E1B|E Chain E, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|E Chain E, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
pdb|3I1N|L Chain L, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|L Chain L, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|L Chain L, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|L Chain L, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|L Chain L, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|L Chain L, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|L Chain L, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|1VT2|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|L Chain L, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3IZT|M Chain M, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|M Chain M, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|L Chain L, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3SGF|P Chain P, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|P Chain P, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3J0T|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|4GAR|L Chain L, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|L Chain L, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 144
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 150 KAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSR 209
K +T + ++T+++ + DL E G V+D NT+ A G ++ A V +
Sbjct: 63 KFGFTSRKAAITAEIRLSDLAKVEGG----VVDLNTLKAANIIGIQIEFAKVILAGEVTT 118
Query: 210 PRTESGRPVSGVVRPGTLASRGGTLEQ 236
P T G V+ R A+ GG +E+
Sbjct: 119 PVTVRGLRVTKGARAAIEAA-GGKIEE 144
>pdb|2GYA|J Chain J, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|J Chain J, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 140
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 150 KAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSR 209
K +T + ++T+++ + DL E G V+D NT+ A G ++ A V +
Sbjct: 60 KFGFTSRKAAITAEIRLSDLAKVEGG----VVDLNTLKAANIIGIQIEFAKVILAGEVTT 115
Query: 210 PRTESGRPVSGVVRPGTLASRGGTLE 235
P T G V+ R A+ GG +E
Sbjct: 116 PVTVRGLRVTKGARAAIEAA-GGKIE 140
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 7 APTATVDSMFYAVDHFHKRN---FEKCAAICTELLAKNPYDKAAWTLK 51
+P +T ++ VDH+ K N +K + C + P++K AW L+
Sbjct: 140 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWELE 187
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 112 APTATVDSMFYAVDHFHKRN---FEKCAAICTELLAKNPYDKAAWTLK 156
+P +T ++ VDH+ K N +K + C + P++K AW L+
Sbjct: 140 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWELE 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,022,247
Number of Sequences: 62578
Number of extensions: 658832
Number of successful extensions: 1904
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1807
Number of HSP's gapped (non-prelim): 90
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)