BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16584
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H7W|A Chain A, Crystal Structure Of Human C16orf57
          Length = 193

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 13/197 (6%)

Query: 13  SFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVGISVEVIPEPHLSLSKTLVIPY 69
           +FPH+R +WAT VY+P +     L  L  +L      V   V  +   HLSLS+++V+ +
Sbjct: 1   TFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVR-MKVFHLSLSQSVVLRH 59

Query: 70  HWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDK 129
           HWI   V+ L   +   +R     N ++I+ N+EKTR+FI L   S       +V  VD+
Sbjct: 60  HWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSGHAQFLDLVSEVDR 119

Query: 130 SAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXXXXXXDNIFTQFKLTSDESFHVVTHIH 189
             +EF L T+Y++P+FH S+AWC+ D                 Q  +   E   V+  +H
Sbjct: 120 VMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQE----LQAIVDGFEDAEVLLRVH 175

Query: 190 M-----KTGNKFYSFPL 201
                 K+GNKF+S PL
Sbjct: 176 TEQVRCKSGNKFFSMPL 192


>pdb|2Q0T|A Chain A, Crystal Structure Of A Putative Gamma-Carboxymuconolactone
           Decarboxylase Subunit (Bxe_b0980) From Burkholderia
           Xenovorans Lb400 At 1.70 A Resolution
 pdb|2Q0T|B Chain B, Crystal Structure Of A Putative Gamma-Carboxymuconolactone
           Decarboxylase Subunit (Bxe_b0980) From Burkholderia
           Xenovorans Lb400 At 1.70 A Resolution
 pdb|2Q0T|C Chain C, Crystal Structure Of A Putative Gamma-Carboxymuconolactone
           Decarboxylase Subunit (Bxe_b0980) From Burkholderia
           Xenovorans Lb400 At 1.70 A Resolution
          Length = 263

 Score = 30.0 bits (66), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 91  IKFNSIEIFCN--EEKTRSFIALGANSCKTSL 120
           +KF  +    N  ++KTR+FIAL A++C T L
Sbjct: 44  LKFAGVPQRRNHLDDKTRAFIALAADACATQL 75


>pdb|3GR5|A Chain A, Periplasmic Domain Of The Outer Membrane Secretin Escc
           From Enteropathogenic E.Coli (Epec)
          Length = 156

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 14/76 (18%)

Query: 61  LSKTLVIP-YHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIAL---GANSC 116
           +S++++ P Y  ID+L++ L + +      ++  NS    CN  K  +F ++   G   C
Sbjct: 89  ISRSIITPTYLDIDSLLKYLSDTI------SVNKNS----CNVRKITTFNSIEVRGVPEC 138

Query: 117 KTSLTSIVQAVDKSAQ 132
              +TS+ +++DK AQ
Sbjct: 139 IKYITSLSESLDKEAQ 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,509,829
Number of Sequences: 62578
Number of extensions: 177611
Number of successful extensions: 326
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 3
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)