Query psy16585
Match_columns 298
No_of_seqs 146 out of 1519
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:45:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 100.0 2.4E-39 8.1E-44 301.9 21.2 250 5-282 84-369 (373)
2 4akf_A VIPD; transferase; 2.90 99.4 1.7E-13 5.8E-18 130.4 5.6 67 69-148 237-304 (577)
3 3tu3_B EXOU; type III secretio 99.0 2.6E-10 9E-15 109.6 3.9 70 67-149 303-383 (711)
4 1hji_B NUN-protein; bacterioph 72.4 2.4 8.1E-05 22.0 1.9 18 278-295 7-24 (26)
5 3nau_A Zinc fingers and homeob 40.3 62 0.0021 21.5 5.1 48 246-296 14-61 (66)
6 1cjy_A CPLA2, protein (cytosol 28.9 31 0.0011 34.3 3.0 34 130-169 545-578 (749)
7 2ecc_A Homeobox and leucine zi 23.1 1.2E+02 0.0041 20.6 4.4 50 244-296 11-60 (76)
8 1y66_A Engrailed homeodomain; 15.6 2E+02 0.0069 17.2 4.7 34 242-275 3-36 (52)
9 2dmt_A Homeobox protein BARH-l 14.2 2.9E+02 0.0099 18.3 4.8 50 244-296 25-74 (80)
10 2dmp_A Zinc fingers and homeob 13.8 2.8E+02 0.0095 19.0 4.6 51 243-296 20-70 (89)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=100.00 E-value=2.4e-39 Score=301.88 Aligned_cols=250 Identities=20% Similarity=0.276 Sum_probs=200.4
Q ss_pred CCHHHHHHHHHHhhhcccCCCccccccccccccccCCcHHHHHHHHHHhCCCCccccccCCCCCeEEEEEEeecCCCCce
Q psy16585 5 RTLDEALQLYMTLSTDLFTQNKLSGYTSMLLRHAYYDTDKFETFLREYIGETPMIQTNRQRKCPKLSVVSTVVNHDKVWP 84 (298)
Q Consensus 5 ~s~~e~~~~y~~~~~~iF~~~~~~~~~~~~~~~~~y~~~~Le~~l~~~~g~~~l~~~~~~~~~~~~~v~s~~~~~~~~~~ 84 (298)
|+++||.++|.+++.+||...+ .+.+++|+.+.|++.|++.||+.++.+.. + +++|++ +|..+++|
T Consensus 84 ~s~~el~~~~~~~~~~iF~~~~-------~l~~~~~~~~~L~~~l~~~~~~~~l~d~~----~-~~~i~a--td~~~~~~ 149 (373)
T 1oxw_A 84 AAAKEIVPFYFEHGPQIFNPSG-------QILGPKYDGKYLMQVLQEKLGETRVHQAL----T-EVVISS--FDIKTNKP 149 (373)
T ss_dssp SCGGGHHHHHHHHHHHHTCCCC-------CSSSCSCCCHHHHHHHHHHHTTCBGGGCS----S-EEEEEE--EETTTTEE
T ss_pred CCHHHHHHHHHHhhHhhcCCCC-------ccccCCcCcHHHHHHHHHHHCcCcHHHcC----C-CEEEEe--EECCCCCe
Confidence 6899999999999999998752 12457999999999999999999987642 3 577755 58889999
Q ss_pred EEeecCCCCcccccccCCCCchhHHHHHHHhccCCCCccceeeC-----C----ceeeecccCC-CChHHHHHHHHHHhC
Q psy16585 85 YVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAPSIFDEFHLD-----G----LVHQDGGMTV-NNPAAVAIHEATLLW 154 (298)
Q Consensus 85 ~~f~~y~~~~~~~~~~~~~~~~~l~~a~~ATsAaP~yF~p~~i~-----~----~~~iDGG~~~-NNP~~~a~~ea~~~~ 154 (298)
++|++|..+.. ...+..+|+|++||||+|+||+|+.++ | ..|+|||+.+ |||+..|+.|++.+|
T Consensus 150 ~~f~~~~~~~~------~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~ 223 (373)
T 1oxw_A 150 VIFTKSNLANS------PELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLA 223 (373)
T ss_dssp EEEESSSTTTC------GGGCCBHHHHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHT
T ss_pred EEEeCCCCCCC------CccCchHHHHHHHHccCCcCcCcEEeeccCCCCcccceeeecCcccccCChHHHHHHHHHHHh
Confidence 99999986542 245789999999999999999999984 4 3899999999 999999999999988
Q ss_pred CCC-----------CCCEEEEecCCCCCCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHhcCchHHHHHHHhhC-
Q psy16585 155 PGA-----------PLQCIVSCGTGRTLPKLNATPYSHDTQSASDSAQTAGSSLWHKMVKILESATDTEGVHTCLSDLL- 222 (298)
Q Consensus 155 p~~-----------~~~~vlSlGTG~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~l~~~i~~~~~~e~~~~~~~~~~- 222 (298)
++. +..+|||||||..+..... + ...+..+||..+|..++++++..+. ++.++.++..++
T Consensus 224 ~~~~~~~~~~~~~~~~~~vvSlGTG~~~~~~~~--~-----~~~~~~~wG~~~w~~~l~~~~~~~~-~~~~d~~~~~~~~ 295 (373)
T 1oxw_A 224 QKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKT--Y-----TAKEAATWTAVHWMLVIQKMTDAAS-SYMTDYYLSTAFQ 295 (373)
T ss_dssp TTCGGGTTSTTCCGGGEEEEEECCCCBCTTSSC--C-----CHHHHTTCCHHHHHTTHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ccCcccccccccccCceEEEEecCCCCCCcccc--c-----ChhhhhhhhhHhHHHHHHHHHHHhh-HHHHHHHHHHHhh
Confidence 743 1248999999986432111 1 1124456899999988888765432 456666555443
Q ss_pred ---CCCceEEeCC-CCC-CCCCCCCCCHHHHHHHHHHHHHHHHh---------CHHHHHHHHHHHhcccchHHh
Q psy16585 223 ---PQGVYYRFNP-YLS-EVPDLDETRPEKLAQLRLDTDIYIRK---------NEAKFQAATQCLLREKSLVAK 282 (298)
Q Consensus 223 ---~~~~Y~R~n~-~~~-~~i~LD~~~~~~i~~l~~~t~~yl~~---------~~~~i~~~~~~L~~~~~~~~~ 282 (298)
.+++|+|||+ .++ ..++||++++++++.|...|++|+.+ |+++|+++|+.|++++..|..
T Consensus 296 ~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~tn~~~l~~~a~~L~~e~~~r~~ 369 (373)
T 1oxw_A 296 ALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRAN 369 (373)
T ss_dssp HTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEeCCCCCCcccccccCCHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHhhcccc
Confidence 3679999998 465 47899999999999999999999998 788999999999998876653
No 2
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=99.39 E-value=1.7e-13 Score=130.42 Aligned_cols=67 Identities=27% Similarity=0.258 Sum_probs=57.5
Q ss_pred eEEEEEEeecCCCCceEEeecCCCCcccccccCCCCchhHHHHHHHhccCCCCccce-eeCCceeeecccCCCChHHHHH
Q psy16585 69 KLSVVSTVVNHDKVWPYVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAPSIFDEF-HLDGLVHQDGGMTVNNPAAVAI 147 (298)
Q Consensus 69 ~~~v~s~~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~l~~a~~ATsAaP~yF~p~-~i~~~~~iDGG~~~NNP~~~a~ 147 (298)
++.|++ +|..++++.+|.+... .+..+++|+|||||+|++|+|+ .+++..|+|||+..|||+..++
T Consensus 237 ~L~IvA--TDv~TGk~v~F~~~~~-----------~d~~l~dAVRASsAlP~~F~PV~~IdG~~yvDGGV~~N~PV~~lf 303 (577)
T 4akf_A 237 NLSVVV--TNQTKHELERYSEDTT-----------PQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEGL 303 (577)
T ss_dssp EEEEEE--EETTTTEEEEEETTTC-----------TTSBHHHHHHHHTCCTTTBCCEECTTCCEEECTTSSSCCCCCTTS
T ss_pred eEEEEE--EECCCCCEEEeCCCCC-----------CCCCHHHHHHHHhCccccccCEEeECCEEEECCCcccCCchHHHH
Confidence 577866 4999999999997432 2568899999999999999999 5999999999999999998665
Q ss_pred H
Q psy16585 148 H 148 (298)
Q Consensus 148 ~ 148 (298)
.
T Consensus 304 d 304 (577)
T 4akf_A 304 D 304 (577)
T ss_dssp C
T ss_pred h
Confidence 4
No 3
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=98.95 E-value=2.6e-10 Score=109.64 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=39.0
Q ss_pred CCeEEEEEEeecCCCCce--EEeecCCCCcccccccCCCCchhHHHHHHHhccCCCCccceeeCCc---------eeeec
Q psy16585 67 CPKLSVVSTVVNHDKVWP--YVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAPSIFDEFHLDGL---------VHQDG 135 (298)
Q Consensus 67 ~~~~~v~s~~~~~~~~~~--~~f~~y~~~~~~~~~~~~~~~~~l~~a~~ATsAaP~yF~p~~i~~~---------~~iDG 135 (298)
++.+.|+++ |..+++| ++|..-.. .++.||+|+|||||+|+||+|+.+++. .|+||
T Consensus 303 ~k~L~IvAT--NL~TGkpelvyFs~~~t-----------Pd~~I~dAVRASsSlP~vF~PV~I~G~~f~~~~e~~~YVDG 369 (711)
T 3tu3_B 303 IKTLNITGT--AMFEGRPQLVVFNASHT-----------PDLEVAQAAHISGSFPGVFQKVSLSDQPYQAGVEWTEFQDG 369 (711)
T ss_dssp SCEEEEEEE--EEETTEEEEEEESTTTC-----------TTSBHHHHHHHHHHCC-------------------------
T ss_pred CceEEEEEE--ECCCCCcceEEeCCCCC-----------CCchHHHHHHHHhcccccCCCEEECCccccccccCceEeec
Confidence 346777665 7778887 57865332 367899999999999999999999986 89999
Q ss_pred ccCCCChHHHHHHH
Q psy16585 136 GMTVNNPAAVAIHE 149 (298)
Q Consensus 136 G~~~NNP~~~a~~e 149 (298)
|+..|+|+..++..
T Consensus 370 GIsdNiPI~~l~d~ 383 (711)
T 3tu3_B 370 GVMINVPVPEMIDK 383 (711)
T ss_dssp ---CCCCGGGGSCC
T ss_pred CcCCCcCHHHHHhC
Confidence 99999999877654
No 4
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=72.38 E-value=2.4 Score=22.02 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.1
Q ss_pred chHHhHHHHHHHhhhhhc
Q psy16585 278 SLVAKMSDYVTRRAYVWN 295 (298)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~ 295 (298)
+.+.++++|+.|.||..+
T Consensus 7 rdrrriarwekriayalk 24 (26)
T 1hji_B 7 RDRRRIARWEKRIAYALK 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 457889999999999765
No 5
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=40.34 E-value=62 Score=21.51 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccchHHhHHHHHHHhhhhhcc
Q psy16585 246 EKLAQLRLDTDIYIRKNEAKFQAATQCLLREKSLVAKMSDYVTRRAYVWNA 296 (298)
Q Consensus 246 ~~i~~l~~~t~~yl~~~~~~i~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 296 (298)
+.+..|+.....-=.-......+||..+-- . +..+.-|++.+++.|+.
T Consensus 14 ~Ql~~LE~~F~~~~YPs~~er~eLA~~tgL--t-~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 14 EQIAHLKASFLQSQFPDDAEVYRLIEVTGL--A-RSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp HHHHHHHHHHHGGGSCCHHHHHHHHHHHCC--C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCc--C-HHHhhHhcccchhhhhc
Confidence 455555443321111124568889887732 2 45568999999999873
No 6
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=28.89 E-value=31 Score=34.34 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.7
Q ss_pred ceeeecccCCCChHHHHHHHHHHhCCCCCCCEEEEecCCC
Q psy16585 130 LVHQDGGMTVNNPAAVAIHEATLLWPGAPLQCIVSCGTGR 169 (298)
Q Consensus 130 ~~~iDGG~~~NNP~~~a~~ea~~~~p~~~~~~vlSlGTG~ 169 (298)
..++|||+..|-|....| -|.+++++|+|+=...
T Consensus 545 L~LvDgG~~~NiP~~pLL------~p~R~VDvI~a~D~Sa 578 (749)
T 1cjy_A 545 IHVVDSGLTFNLPYPLIL------RPQRGVDLIISFDFSA 578 (749)
T ss_dssp EEEECGGGTCSSCHHHHC------CGGGCCCEEEEEECCC
T ss_pred EEEEccccccCCCccccc------CccccccEEEEEecCc
Confidence 589999999888998774 4667899999996554
No 7
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.11 E-value=1.2e+02 Score=20.58 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccchHHhHHHHHHHhhhhhcc
Q psy16585 244 RPEKLAQLRLDTDIYIRKNEAKFQAATQCLLREKSLVAKMSDYVTRRAYVWNA 296 (298)
Q Consensus 244 ~~~~i~~l~~~t~~yl~~~~~~i~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 296 (298)
+++.+..|+..-..-=.-......+||..+--. +..+.-|++.+++.|+.
T Consensus 11 T~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLt---e~qIkvWFqNrR~k~Kk 60 (76)
T 2ecc_A 11 TKEQLAILKSFFLQCQWARREDYQKLEQITGLP---RPEIIQWFGDTRYALKH 60 (76)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcC---HHHhhHHhHhhHHHHHH
Confidence 456777775433310000145577788776432 55667799999999874
No 8
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=15.65 E-value=2e+02 Score=17.15 Aligned_cols=34 Identities=12% Similarity=-0.099 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhc
Q psy16585 242 ETRPEKLAQLRLDTDIYIRKNEAKFQAATQCLLR 275 (298)
Q Consensus 242 ~~~~~~i~~l~~~t~~yl~~~~~~i~~~~~~L~~ 275 (298)
.|+.+.-..|++..+.--+-..+.+.+.|+.|--
T Consensus 3 qwseeverklkefvrrhqeitqetlheyaqklgl 36 (52)
T 1y66_A 3 QWSEEVERKLKEFVRRHQEITQETLHEYAQKLGL 36 (52)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4654444455444443322223457888887754
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.21 E-value=2.9e+02 Score=18.30 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccchHHhHHHHHHHhhhhhcc
Q psy16585 244 RPEKLAQLRLDTDIYIRKNEAKFQAATQCLLREKSLVAKMSDYVTRRAYVWNA 296 (298)
Q Consensus 244 ~~~~i~~l~~~t~~yl~~~~~~i~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 296 (298)
+++.+..|+..-..--.-...+..+||..|--. ...+.-|++.++..|+.
T Consensus 25 t~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~---~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 25 TELQLMGLEKRFEKQKYLSTPDRIDLAESLGLS---QLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCC---HHHeeeccHHHHHHhhc
Confidence 455666665433210000134567777776322 44567799999988864
No 10
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.84 E-value=2.8e+02 Score=18.99 Aligned_cols=51 Identities=6% Similarity=-0.027 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccchHHhHHHHHHHhhhhhcc
Q psy16585 243 TRPEKLAQLRLDTDIYIRKNEAKFQAATQCLLREKSLVAKMSDYVTRRAYVWNA 296 (298)
Q Consensus 243 ~~~~~i~~l~~~t~~yl~~~~~~i~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 296 (298)
.+++.+..|+..-..--.-......+||..|--. ...+.-|++.++..|+.
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~---~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLS---RREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCC---HHhccHhhHhHHHHHHH
Confidence 4667777775543220000234567788777332 44567899999988853
Done!