RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16585
(298 letters)
>1oxw_A Patatin; alpha/beta class fold with approximately three layers;
2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Length = 373
Score = 116 bits (291), Expect = 3e-30
Identities = 46/288 (15%), Positives = 86/288 (29%), Gaps = 47/288 (16%)
Query: 6 TLDEALQLYMTLSTDLFTQNKLSGYTSMLLRHAYYDTDKFETFLREYIGETPMIQTNRQR 65
E + Y +F + YD L+E +GET + Q +
Sbjct: 85 AAKEIVPFYFEHGPQIFNPSGQI-------LGPKYDGKYLMQVLQEKLGETRVHQALTEV 137
Query: 66 KCPKLSVVSTVVNHDKVWPYVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAPSIFDEF 125
+ P +F + + M+ +++AAP+ F
Sbjct: 138 VISS-------FDIKTNKPVIFTKSNLANSP------ELDAKMYDISYSTAAAPTYFPPH 184
Query: 126 HLDGLVHQ---------DGGM-TVNNPAAVAIHEATLLWPGAPL-----------QCIVS 164
+ DG + TV +PA ++I AT L P ++S
Sbjct: 185 YFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLS 244
Query: 165 CGTGRTLPKLNATPYSHDTQSASDSAQTAGSSLWHKMVKILESATDTEGVHTCLSDLLPQ 224
GTG T + ++ + A+ + KM S + T L +
Sbjct: 245 LGTGTT----SEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSK 300
Query: 225 GVYYRFN--PYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAT 270
Y R ++D+ + L + ++K ++ T
Sbjct: 301 NNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPET 348
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 86/191 (45%)
Query: 98 SQY--MGDHKYAMWQAVRASSAAPSIFDE--FHLD---GLVHQDGGMTVNNPAAVAIHEA 150
SQ MG Y + S AA +++ H G D + +NNP + IH
Sbjct: 1626 SQEQGMGMDLY------KTSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHF- 1676
Query: 151 TLLWPGAPLQCI---------VSCGTGRTLPK---------------------LNATPYS 180
G + I + G+ + L+AT +
Sbjct: 1677 ----GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF- 1731
Query: 181 HDTQSASDSAQTAGSSLWHKMVKILESATDTEGV---------H--------TCLSDLLP 223
TQ A + + + L+S +G+ H L+D++
Sbjct: 1732 --TQPAL---TLMEKAAF----EDLKS----KGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 224 -----QGVYYR 229
+ V+YR
Sbjct: 1779 IESLVEVVFYR 1789
Score = 33.9 bits (77), Expect = 0.063
Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 56/248 (22%)
Query: 72 VVSTVVNHDKVWPYVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAP--SIFDEFHLDG 129
V + + W F + + + + VR A P S+ D
Sbjct: 278 VTAVAIAETDSWE-SF------FVSVRKAI---TVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 130 LVHQDGGMTVNNPAAVAIHEATLLWPGAPLQCIVSCGTGRTLPKLNATPYSHDTQSASDS 189
L + +G + P ++I T +Q V+ T LP S +
Sbjct: 328 LENNEGVPS---P-MLSISNLTQ----EQVQDYVN-KTNSHLP-----AGKQVEISLVNG 373
Query: 190 AQT---AG--SSLWHKMVKILESATDTEGVHTC---LSDLLPQGVYYRFNP--------Y 233
A+ +G SL+ + L A G+ S+ + RF P
Sbjct: 374 AKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLK-FSNRFLPVASPFHSHL 431
Query: 234 LSEVPDLDETRPEKLAQLRLDTDIYIRKNEAK---FQAATQCLLRE--KSLVAKMSDYVT 288
L DL + + + ++ + + + LR S+ ++ D +
Sbjct: 432 LVPASDL-------INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 289 RRAYVWNA 296
R W
Sbjct: 485 RLPVKWET 492
Score = 30.0 bits (67), Expect = 1.1
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 193 AGSSLWHKMVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLS-EVPDLDETRPEKLAQL 251
S L + KIL T+ + P + +F Y+S V + +++ L
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTT--PAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 252 RLD--TDIYIRKNE-----AKFQAATQCLLREKSLVAKMSDYVTRRA 291
L + Y+ N+ AK L + + K +Y+T R
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK--NYITARI 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.057
Identities = 48/348 (13%), Positives = 98/348 (28%), Gaps = 123/348 (35%)
Query: 16 TLSTDLFTQNK-----LSGYT----SMLLRHAYYDTDKFETFLREYIGETP------MIQ 60
L T T+ K LS T S+ D+ ++ L +Y+ P ++
Sbjct: 268 ILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 61 TNRQRKCP-KLSVVSTVV-NHDKVWPYVFRNY-----------CI----PYERKSQYMGD 103
TN P +LS+++ + + W +++ + P E + +
Sbjct: 325 TN-----PRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFD-- 376
Query: 104 HKYAMWQAVRASSAAPSIFDEFHLDGLVHQDGGMTVNNPAAVAIHEATLLWPGAPLQC-- 161
S+F + P + +L+W
Sbjct: 377 --------------RLSVFPP---------S----AHIPTILL----SLIWFDVIKSDVM 405
Query: 162 -IVSCGTGRTLPKLNATPYS---HDTQSASDSAQTAGSSLWHKMVKILESATDTEGVHTC 217
+V+ +L + + +L H+ I++ +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HR--SIVDHYNIPKTF--D 460
Query: 218 LSDLLPQ---GVYYRFNPY-LS--EVPDLDETRPEKLAQLR------------------- 252
DL+P +Y + L E P+ R
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 253 LDT--DI-----YIRKNEAKFQAATQCLLR------EKSLVAKMSDYV 287
L+T + YI N+ K++ +L E + +K +D +
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 27.5 bits (60), Expect = 7.8
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 34/117 (29%)
Query: 209 TDTEGVHTCLSDLLP---QGVYYRFNPYLSEVPD----------LDE--TRPEKLAQLRL 253
+T D+L F+ +V D +D + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 254 DTDIYIRKNEAKFQAATQCLL---------------REKSLVAKMSDYVTRRAYVWN 295
+ K E Q + +L R+ S++ +M Y+ +R ++N
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--YIEQRDRLYN 121
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.1
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 14/65 (21%)
Query: 229 RFNPYLSEVPDLDETRPEKLAQLR------LDTDIYIRKNE--AKFQAATQCLLREKSLV 280
L E LD + R L+ + R++E K + + + +K+
Sbjct: 93 EQRKRLQE---LDAASKVMEQEWREKAKKDLE-EWNQRQSEQVEKNKINNR--IADKAFY 146
Query: 281 AKMSD 285
+
Sbjct: 147 QQPDA 151
Score = 29.0 bits (64), Expect = 1.6
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 234 LSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAATQCLLREKSLVAK--MSDYVTRRA 291
+++ L + PE + + R + +++ +A + Q REK AK + ++ R++
Sbjct: 74 IAQADRLTQ-EPESIRKWREEQRKRLQELDAASKVMEQ-EWREK---AKKDLEEWNQRQS 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 44 KFETFLREYIGETPMIQTNRQRKCPKLSVVSTV 76
K + L+ Y ++ P L++ +T+
Sbjct: 24 KLQASLKLYADDS----------APALAIKATM 46
>3tu3_B EXOU; type III secretion system, SPC infectious diseases,
structural genomics, center for struct genomics of
infectious diseases, csgid; 1.92A {Pseudomonas
aeruginosa} PDB: 4akx_B*
Length = 711
Score = 29.0 bits (63), Expect = 2.0
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 109 WQAVRASSAAPSIFDEFHLDGLVHQ---------DGGMTVNNPAAVAIHEATLLWP 155
QA S + P +F + L +Q DGG+ +N P I + P
Sbjct: 334 AQAAHISGSFPGVFQKVSLSDQPYQAGVEWTEFQDGGVMINVPVPEMIDKNFDSGP 389
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 167 TGRTLPKLNATPYSHDTQSASDSAQTAGSSLWHKMVKILESATDTE 212
T T + HD++S D + H +V +ES+TD
Sbjct: 148 TEPTASVSSGNESRHDSESMHDPNDKKDHTPDHDVVPDIESSTDKG 193
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 27.8 bits (62), Expect = 6.1
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 36 RHAYYDTDKFETFLREYIGETPMIQTNRQRKC 67
H Y F L+ +I + P + N +
Sbjct: 186 AHYYIKMQDFAERLKRWIEKQP-WKPNVKNMV 216
>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida
antarctica} PDB: 2veo_A*
Length = 462
Score = 27.2 bits (59), Expect = 7.3
Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 11/178 (6%)
Query: 94 YERKSQYMGDHK---YAMWQAVRASSAAPSIFDEFHLDGLVHQDGGMTVNNPAAVAIHEA 150
+E A+ +RA ++ + + + G ++A A
Sbjct: 163 HEGFKAAFIAGYEEGMAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYA 222
Query: 151 TLLWPGAPLQCIVSCGTGRTLPKLNATPYSHDTQSASDSAQTAGSSLWHKMVKIL----- 205
L T LN P++ + A + + L
Sbjct: 223 PELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQ 282
Query: 206 ESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 263
+ G CL ++ Y F S V D + +A + + +
Sbjct: 283 RTLKQIRGRGFCLPQVVLT---YPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEAS 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.404
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,384,320
Number of extensions: 243807
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 15
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)