RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16585
         (298 letters)



>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
           cardiophyllum) [TaxId: 160510]}
          Length = 360

 Score = 98.5 bits (244), Expect = 3e-24
 Identities = 44/281 (15%), Positives = 81/281 (28%), Gaps = 32/281 (11%)

Query: 4   GRTLDEALQLYMTLSTDLFTQNKLSGYTSMLLRHAYYDTDKFETFLREYIGETPMIQTNR 63
               +        +    F         S  +    YD       L+E +GET + Q   
Sbjct: 65  PNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALT 124

Query: 64  QRKCPKLSVVSTVVNHDKVWPYVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAPSIFD 123
           +          +  +     P +F    +          +    M+    +++AAP+ F 
Sbjct: 125 EVVI-------SSFDIKTNKPVIFTKSNL------ANSPELDAKMYDISYSTAAAPTYFP 171

Query: 124 EFHLDGLVHQ---------DGGM-TVNNPAAVAIHEATLLWPGAPL---QCIVSCGTGRT 170
             +                DG + TV +PA ++I  AT L    P       ++      
Sbjct: 172 PHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLL 231

Query: 171 LPKLNATPYSHDTQSASDSAQTAGSSLW----HKMVKILESATDTEGVHTCLSDLLPQGV 226
           L     T    D    +  A T  +  W     KM     S      + T    L  +  
Sbjct: 232 LSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNN 291

Query: 227 YYRFNP--YLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAK 265
           Y R           ++D+     +  L    +  ++K  ++
Sbjct: 292 YLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSE 332


>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 339

 Score = 25.5 bits (55), Expect = 9.0
 Identities = 7/80 (8%), Positives = 20/80 (25%), Gaps = 3/80 (3%)

Query: 74  STVVNHDKVWPYVFRNYCIPYERKSQYMGDHKYAMWQAVRASSAAPSIFDEFHLDGLVHQ 133
              +  D         +   +  K     D+     + + A           +    V +
Sbjct: 88  GISLLADGRPMIADFAFN-GWGMKFAAHHDNLIT--RRLHALGLFAEGVTLDNRLAFVLE 144

Query: 134 DGGMTVNNPAAVAIHEATLL 153
            G +  +    +   ++ L 
Sbjct: 145 GGALETDGEGTLLTTDSCLF 164


>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha,
           eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 24.4 bits (53), Expect = 9.4
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 93  PYERKSQYMGDHKYAMWQAVRASSAAPSIFDEFHLD 128
            ++ K +  G   Y    A + + + PSI D   L+
Sbjct: 48  VFDDKYKRPGYGAY---DAFKHAVSDPSILDSLDLN 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,068,124
Number of extensions: 46326
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 4
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)