BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16587
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68
+V V DYD ++DF+G ++I +L+ G +L+ GD + SATL+
Sbjct: 567 LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKN---------GDQHPSATLF 617
Query: 69 PR 70
+
Sbjct: 618 VK 619
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68
+V V DYD ++DF+G ++I +L+ G +L+ GD + SATL+
Sbjct: 565 LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKN---------GDQHPSATLF 615
Query: 69 PR 70
+
Sbjct: 616 VK 617
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTT 35
+E+ V+DYD +DF+G IDL++
Sbjct: 98 LEVTVWDYDRFSSNDFLGEVLIDLSS 123
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 5 TSGLVVELQVFDYDWGLQDDFMGS 28
++G + +QV+D D+G DD +GS
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGS 475
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 26.2 bits (56), Expect = 5.8, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 1 MPETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLE 37
+ E+ + ++++D+D ++DFMGS S ++ L+
Sbjct: 232 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 268
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69
++ ++FD D G +DD +G A+I L + + + T + K EE G+I+++ + P
Sbjct: 73 LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS--IPPTAYNVVKDEEYKGEIWVALSFKP 130
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 44 LILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTLEDPNKP 103
+ L + PE+N + + +L +A+ ++S +C + TL DP +
Sbjct: 26 VTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQL 85
Query: 104 EENLGDIYLSATLYPRSQED 123
E ++G + L A + +ED
Sbjct: 86 EVHIGWLLLQAPRWVFKEED 105
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 44 LILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTLEDPNKP 103
+ L + PE+N + + +L +A+ ++S +C + TL DP +
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQL 84
Query: 104 EENLGDIYLSATLYPRSQED 123
E ++G + L A + +ED
Sbjct: 85 EVHIGWLLLQAPRWVFKEED 104
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLE 37
+ ++++D+D ++DFMGS S ++ L+
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGISELQ 127
>pdb|3FY6|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|C Chain C, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|D Chain D, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
Length = 126
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE--DPNKPEENLGDIYLSATL 67
V L ++ WG + ++ D + G T E DP EE L DI + ++
Sbjct: 12 VNLNIYSPRWGRHETYIVELHKDYXEISXGAVTIKATYSENQDPEWSEETLQDIXNNDSV 71
Query: 68 YP 69
YP
Sbjct: 72 YP 73
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 44 LILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTLEDPNKP 103
+ L + PE+N + + +L +A+ ++S +C + TL DP +
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQL 84
Query: 104 EENLGDIYLSATLYPRSQED 123
E ++G + L A + +ED
Sbjct: 85 EVHIGWLLLQAPRWVFKEED 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,870
Number of Sequences: 62578
Number of extensions: 144819
Number of successful extensions: 285
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 22
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)