Query psy16587
Match_columns 130
No_of_seqs 159 out of 397
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:47:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 99.8 8.9E-20 1.9E-24 151.8 11.9 101 5-124 230-335 (421)
2 cd04042 C2A_MCTP_PRT C2 domain 99.4 9.4E-13 2E-17 91.5 7.9 67 2-69 55-121 (121)
3 cd04016 C2_Tollip C2 domain pr 99.4 1E-12 2.2E-17 92.7 6.5 65 2-67 56-121 (121)
4 cd08400 C2_Ras_p21A1 C2 domain 99.3 1.4E-11 2.9E-16 86.8 8.2 63 8-70 62-125 (126)
5 cd08401 C2A_RasA2_RasA3 C2 dom 99.3 2E-11 4.3E-16 85.5 6.9 66 2-67 56-121 (121)
6 cd08376 C2B_MCTP_PRT C2 domain 99.1 3.9E-10 8.4E-15 77.4 7.1 56 7-68 60-115 (116)
7 cd08373 C2A_Ferlin C2 domain f 99.1 8.7E-10 1.9E-14 77.1 8.7 66 6-72 55-120 (127)
8 cd08682 C2_Rab11-FIP_classI C2 99.1 2.8E-10 6.1E-15 79.6 6.2 61 6-66 63-126 (126)
9 cd08678 C2_C21orf25-like C2 do 99.1 7.1E-10 1.5E-14 77.6 7.9 69 3-71 54-123 (126)
10 cd08677 C2A_Synaptotagmin-13 C 99.1 4.2E-10 9.1E-15 79.3 6.3 42 59-119 1-43 (118)
11 cd04033 C2_NEDD4_NEDD4L C2 dom 99.0 4.4E-10 9.6E-15 78.9 5.6 66 3-68 62-133 (133)
12 cd08692 C2B_Tac2-N C2 domain s 99.0 5.7E-10 1.2E-14 80.3 6.1 44 60-122 2-49 (135)
13 cd08407 C2B_Synaptotagmin-13 C 99.0 1.1E-09 2.4E-14 78.8 6.5 45 59-122 2-52 (138)
14 cd04019 C2C_MCTP_PRT_plant C2 99.0 1.4E-09 3E-14 79.1 6.9 71 2-72 55-136 (150)
15 cd04044 C2A_Tricalbin-like C2 99.0 8.7E-10 1.9E-14 76.1 5.4 64 3-69 60-124 (124)
16 cd04052 C2B_Tricalbin-like C2 99.0 1.1E-09 2.4E-14 75.3 5.7 62 2-69 47-110 (111)
17 cd04022 C2A_MCTP_PRT_plant C2 99.0 1.8E-09 4E-14 75.5 6.9 62 7-68 63-126 (127)
18 KOG1030|consensus 99.0 3.2E-10 6.8E-15 84.0 3.0 44 1-44 59-102 (168)
19 cd08677 C2A_Synaptotagmin-13 C 99.0 6E-10 1.3E-14 78.5 4.3 43 6-48 76-118 (118)
20 cd08681 C2_fungal_Inn1p-like C 99.0 1E-09 2.2E-14 75.6 4.8 58 6-67 61-118 (118)
21 cd08406 C2B_Synaptotagmin-12 C 99.0 1.7E-09 3.7E-14 77.5 6.2 44 58-120 1-48 (136)
22 cd04024 C2A_Synaptotagmin-like 98.9 3E-09 6.4E-14 73.9 6.6 62 6-67 62-128 (128)
23 cd08379 C2D_MCTP_PRT_plant C2 98.9 2.8E-09 6.2E-14 75.6 6.5 63 1-63 56-125 (126)
24 cd08378 C2B_MCTP_PRT_plant C2 98.9 3.5E-09 7.5E-14 74.1 6.7 60 6-67 55-119 (121)
25 cd04036 C2_cPLA2 C2 domain pre 98.9 6.6E-09 1.4E-13 71.8 7.9 56 7-68 63-118 (119)
26 cd08391 C2A_C2C_Synaptotagmin_ 98.9 4.9E-09 1.1E-13 72.0 6.8 57 5-67 65-121 (121)
27 cd08377 C2C_MCTP_PRT C2 domain 98.9 8.1E-09 1.8E-13 70.9 7.0 64 2-67 55-118 (119)
28 cd04015 C2_plant_PLD C2 domain 98.9 1E-08 2.2E-13 75.1 7.7 66 2-68 92-158 (158)
29 cd08375 C2_Intersectin C2 doma 98.9 8.2E-09 1.8E-13 73.8 6.8 57 7-68 75-136 (136)
30 cd04054 C2A_Rasal1_RasA4 C2 do 98.8 1.1E-08 2.3E-13 71.3 6.3 64 3-66 56-120 (121)
31 PLN03008 Phospholipase D delta 98.8 1.1E-08 2.4E-13 91.1 7.5 72 1-73 110-182 (868)
32 cd04014 C2_PKC_epsilon C2 doma 98.8 2.2E-08 4.7E-13 70.5 7.0 58 6-70 72-131 (132)
33 cd08409 C2B_Synaptotagmin-15 C 98.8 1.6E-08 3.6E-13 72.1 6.2 43 58-119 1-46 (137)
34 cd08395 C2C_Munc13 C2 domain t 98.8 1.8E-08 3.9E-13 70.9 6.3 46 6-51 68-113 (120)
35 cd08393 C2A_SLP-1_2 C2 domain 98.8 2.4E-08 5.1E-13 70.1 6.7 50 58-126 1-60 (125)
36 cd04028 C2B_RIM1alpha C2 domai 98.7 2E-08 4.4E-13 73.0 5.9 51 3-53 90-141 (146)
37 cd08389 C2A_Synaptotagmin-14_1 98.7 2.1E-08 4.5E-13 70.4 5.8 45 6-50 80-124 (124)
38 cd04017 C2D_Ferlin C2 domain f 98.7 3.8E-08 8.3E-13 69.7 7.1 60 8-70 71-134 (135)
39 cd04029 C2A_SLP-4_5 C2 domain 98.7 3.1E-08 6.7E-13 69.6 6.5 43 59-120 2-49 (125)
40 cd08392 C2A_SLP-3 C2 domain fi 98.7 3.6E-08 7.9E-13 69.8 6.5 44 58-120 1-49 (128)
41 cd04043 C2_Munc13_fungal C2 do 98.7 6.8E-08 1.5E-12 67.1 7.3 58 7-71 64-124 (126)
42 cd08410 C2B_Synaptotagmin-17 C 98.7 4.6E-08 1E-12 69.5 6.2 42 59-119 1-46 (135)
43 cd08381 C2B_PI3K_class_II C2 d 98.7 5.8E-08 1.3E-12 68.0 6.5 41 58-119 1-44 (122)
44 cd08408 C2B_Synaptotagmin-14_1 98.7 4E-08 8.8E-13 70.4 5.8 42 59-119 2-47 (138)
45 cd04025 C2B_RasA1_RasA4 C2 dom 98.7 4.8E-08 1E-12 67.8 6.0 59 7-65 60-122 (123)
46 cd04010 C2B_RasA3 C2 domain se 98.7 6.3E-08 1.4E-12 70.4 6.7 46 7-52 78-124 (148)
47 cd08393 C2A_SLP-1_2 C2 domain 98.7 3.2E-08 7E-13 69.4 5.0 43 7-49 83-125 (125)
48 cd04029 C2A_SLP-4_5 C2 domain 98.7 3.8E-08 8.2E-13 69.2 5.3 43 7-49 83-125 (125)
49 cd08690 C2_Freud-1 C2 domain f 98.7 1.1E-07 2.3E-12 69.9 7.8 61 7-69 77-138 (155)
50 cd08388 C2A_Synaptotagmin-4-11 98.7 7.5E-08 1.6E-12 67.9 6.3 44 7-50 83-128 (128)
51 cd08381 C2B_PI3K_class_II C2 d 98.7 4.6E-08 9.9E-13 68.5 5.2 43 6-48 79-121 (122)
52 cd04051 C2_SRC2_like C2 domain 98.7 4.4E-08 9.6E-13 68.0 5.0 55 7-63 66-125 (125)
53 cd04028 C2B_RIM1alpha C2 domai 98.7 8.2E-08 1.8E-12 69.8 6.6 44 56-120 15-63 (146)
54 cd08402 C2B_Synaptotagmin-1 C2 98.7 7.1E-08 1.5E-12 68.2 6.1 43 58-119 1-47 (136)
55 cd08385 C2A_Synaptotagmin-1-5- 98.6 6.1E-08 1.3E-12 67.2 5.5 44 7-50 81-124 (124)
56 cd04030 C2C_KIAA1228 C2 domain 98.6 9.8E-08 2.1E-12 66.3 6.3 50 58-126 2-60 (127)
57 cd08680 C2_Kibra C2 domain fou 98.6 1.1E-07 2.4E-12 67.1 6.5 43 60-121 2-48 (124)
58 cd08387 C2A_Synaptotagmin-8 C2 98.6 9.2E-08 2E-12 66.4 5.7 43 7-49 81-123 (124)
59 cd04046 C2_Calpain C2 domain p 98.6 2.7E-07 5.9E-12 64.6 8.1 65 3-70 58-124 (126)
60 cd04031 C2A_RIM1alpha C2 domai 98.6 1.6E-07 3.5E-12 64.9 6.4 50 58-126 2-60 (125)
61 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.6 1.5E-07 3.3E-12 69.2 6.4 61 58-126 1-71 (162)
62 cd08521 C2A_SLP C2 domain firs 98.6 1.9E-07 4.1E-12 64.4 6.4 42 59-119 1-47 (123)
63 cd08403 C2B_Synaptotagmin-3-5- 98.6 1.6E-07 3.5E-12 66.2 6.1 42 59-119 1-46 (134)
64 cd08386 C2A_Synaptotagmin-7 C2 98.6 1.4E-07 2.9E-12 65.5 5.6 44 7-50 82-125 (125)
65 cd04027 C2B_Munc13 C2 domain s 98.6 1.3E-07 2.9E-12 66.3 5.5 61 3-65 56-127 (127)
66 cd08405 C2B_Synaptotagmin-7 C2 98.6 1.8E-07 3.9E-12 66.1 6.2 42 58-118 1-46 (136)
67 cd08388 C2A_Synaptotagmin-4-11 98.6 2.2E-07 4.7E-12 65.6 6.5 43 58-119 2-49 (128)
68 cd08387 C2A_Synaptotagmin-8 C2 98.6 2.3E-07 5E-12 64.4 6.4 50 58-126 2-58 (124)
69 cd04040 C2D_Tricalbin-like C2 98.5 3E-07 6.6E-12 62.7 6.7 55 6-62 59-113 (115)
70 cd08404 C2B_Synaptotagmin-4 C2 98.5 2.4E-07 5.3E-12 65.5 6.2 44 58-120 1-48 (136)
71 cd08382 C2_Smurf-like C2 domai 98.5 2.2E-07 4.8E-12 64.8 5.7 60 7-66 59-123 (123)
72 cd08386 C2A_Synaptotagmin-7 C2 98.5 3.3E-07 7.1E-12 63.5 6.4 51 57-126 1-58 (125)
73 cd08385 C2A_Synaptotagmin-1-5- 98.5 3.8E-07 8.2E-12 63.2 6.6 43 58-119 2-48 (124)
74 cd08685 C2_RGS-like C2 domain 98.5 2.5E-07 5.4E-12 64.6 5.7 40 59-119 1-43 (119)
75 cd00276 C2B_Synaptotagmin C2 d 98.5 3.5E-07 7.5E-12 63.8 6.3 42 59-119 1-46 (134)
76 cd08394 C2A_Munc13 C2 domain f 98.5 1.6E-07 3.5E-12 67.0 4.2 48 2-50 52-101 (127)
77 cd08389 C2A_Synaptotagmin-14_1 98.4 5.4E-07 1.2E-11 63.1 6.1 43 58-119 2-48 (124)
78 cd08384 C2B_Rabphilin_Doc2 C2 98.4 8.2E-07 1.8E-11 62.3 6.4 41 60-119 1-45 (133)
79 cd08390 C2A_Synaptotagmin-15-1 98.4 8.7E-07 1.9E-11 61.1 6.5 42 59-119 1-47 (123)
80 cd08521 C2A_SLP C2 domain firs 98.4 5E-07 1.1E-11 62.3 5.0 42 7-48 82-123 (123)
81 cd08390 C2A_Synaptotagmin-15-1 98.4 7E-07 1.5E-11 61.6 5.6 44 7-50 80-123 (123)
82 cd04013 C2_SynGAP_like C2 doma 98.4 1.7E-06 3.7E-11 63.0 7.8 66 6-71 65-142 (146)
83 cd08680 C2_Kibra C2 domain fou 98.4 3.3E-07 7.2E-12 64.7 3.6 43 6-48 81-124 (124)
84 cd04011 C2B_Ferlin C2 domain s 98.4 7.9E-07 1.7E-11 60.7 5.3 45 7-51 64-111 (111)
85 cd08675 C2B_RasGAP C2 domain s 98.4 8.5E-07 1.9E-11 63.3 5.6 47 6-52 76-122 (137)
86 cd08392 C2A_SLP-3 C2 domain fi 98.4 8.4E-07 1.8E-11 62.8 5.2 43 7-49 83-128 (128)
87 cd04035 C2A_Rabphilin_Doc2 C2 98.3 1.9E-06 4.2E-11 59.6 6.6 42 58-118 1-46 (123)
88 cd08688 C2_KIAA0528-like C2 do 98.3 8.3E-07 1.8E-11 60.7 4.4 44 7-50 63-109 (110)
89 cd04009 C2B_Munc13-like C2 dom 98.3 2E-06 4.4E-11 60.7 6.3 42 58-118 2-47 (133)
90 cd08383 C2A_RasGAP C2 domain ( 98.3 2.9E-06 6.2E-11 57.8 6.8 59 7-67 59-117 (117)
91 cd04031 C2A_RIM1alpha C2 domai 98.3 1.2E-06 2.6E-11 60.5 5.0 42 7-49 84-125 (125)
92 cd04047 C2B_Copine C2 domain s 98.3 1.2E-06 2.6E-11 59.5 4.8 41 5-45 67-107 (110)
93 cd04048 C2A_Copine C2 domain f 98.3 1E-06 2.2E-11 61.0 4.3 46 5-50 65-114 (120)
94 cd04021 C2_E3_ubiquitin_ligase 98.3 2.5E-06 5.3E-11 59.8 6.1 60 6-65 59-124 (125)
95 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.2 1.8E-06 3.8E-11 63.5 4.9 44 7-50 95-138 (162)
96 KOG2059|consensus 98.2 2.7E-06 6E-11 74.5 6.7 105 4-126 62-173 (800)
97 cd04049 C2_putative_Elicitor-r 98.2 1.2E-06 2.6E-11 60.8 3.7 45 7-51 65-109 (124)
98 PLN03200 cellulose synthase-in 98.2 2.6E-06 5.7E-11 82.0 6.8 65 2-70 2033-2102(2102)
99 cd04030 C2C_KIAA1228 C2 domain 98.2 2.7E-06 5.9E-11 58.9 5.1 43 7-49 83-127 (127)
100 KOG1013|consensus 98.1 2E-06 4.2E-11 69.9 3.7 94 8-120 162-266 (362)
101 cd08685 C2_RGS-like C2 domain 98.1 2.2E-06 4.7E-11 59.8 3.3 43 6-48 76-119 (119)
102 cd08374 C2F_Ferlin C2 domain s 98.1 2.9E-06 6.3E-11 60.9 4.0 35 7-41 92-126 (133)
103 cd04026 C2_PKC_alpha_gamma C2 98.1 4.9E-06 1.1E-10 58.2 4.9 47 6-53 78-124 (131)
104 cd04018 C2C_Ferlin C2 domain t 98.1 6.5E-06 1.4E-10 60.1 5.7 49 5-53 73-128 (151)
105 cd04045 C2C_Tricalbin-like C2 98.1 5.7E-06 1.2E-10 57.7 5.0 48 2-50 56-103 (120)
106 cd04039 C2_PSD C2 domain prese 98.1 3.4E-06 7.5E-11 57.9 3.8 35 6-40 65-99 (108)
107 cd04041 C2A_fungal C2 domain f 98.1 2.7E-06 5.8E-11 58.2 3.0 41 6-49 67-107 (111)
108 cd00275 C2_PLC_like C2 domain 98.1 2E-05 4.3E-10 54.4 7.3 56 8-67 72-127 (128)
109 cd04038 C2_ArfGAP C2 domain pr 98.0 6E-06 1.3E-10 59.8 3.6 39 2-40 55-93 (145)
110 cd08691 C2_NEDL1-like C2 domai 98.0 3.6E-05 7.9E-10 55.2 6.9 60 6-65 71-136 (137)
111 cd04026 C2_PKC_alpha_gamma C2 97.9 2.6E-05 5.6E-10 54.5 5.7 40 58-118 1-44 (131)
112 cd04037 C2E_Ferlin C2 domain f 97.9 1.2E-05 2.5E-10 56.2 3.8 62 6-71 61-122 (124)
113 cd04050 C2B_Synaptotagmin-like 97.9 2.6E-05 5.7E-10 52.7 5.1 47 2-51 54-103 (105)
114 cd04035 C2A_Rabphilin_Doc2 C2 97.9 3.1E-05 6.8E-10 53.5 5.2 41 7-48 83-123 (123)
115 cd04032 C2_Perforin C2 domain 97.8 2.8E-05 6E-10 55.2 4.5 33 6-38 87-119 (127)
116 cd08404 C2B_Synaptotagmin-4 C2 97.8 7.8E-06 1.7E-10 57.8 1.3 44 6-51 81-124 (136)
117 cd08407 C2B_Synaptotagmin-13 C 97.8 3.7E-05 7.9E-10 55.3 4.8 40 7-48 84-123 (138)
118 cd08384 C2B_Rabphilin_Doc2 C2 97.8 3.6E-05 7.8E-10 53.9 4.6 41 7-49 80-120 (133)
119 cd04050 C2B_Synaptotagmin-like 97.7 3.5E-05 7.7E-10 52.0 3.7 34 93-126 2-39 (105)
120 cd04009 C2B_Munc13-like C2 dom 97.7 3.9E-05 8.4E-10 54.1 4.0 33 6-38 86-118 (133)
121 cd08405 C2B_Synaptotagmin-7 C2 97.7 5.9E-05 1.3E-09 53.2 4.9 40 7-48 82-121 (136)
122 cd08402 C2B_Synaptotagmin-1 C2 97.7 0.00011 2.3E-09 51.8 5.8 39 8-48 83-121 (136)
123 cd08376 C2B_MCTP_PRT C2 domain 97.7 4.2E-05 9.1E-10 52.2 3.6 35 93-127 2-40 (116)
124 cd08681 C2_fungal_Inn1p-like C 97.7 7.1E-05 1.5E-09 51.2 4.6 35 92-126 2-40 (118)
125 cd08688 C2_KIAA0528-like C2 do 97.7 4.3E-05 9.3E-10 52.1 3.2 34 93-126 1-39 (110)
126 cd04011 C2B_Ferlin C2 domain s 97.7 6.8E-05 1.5E-09 51.0 4.1 35 92-127 5-40 (111)
127 cd04039 C2_PSD C2 domain prese 97.7 5.4E-05 1.2E-09 52.0 3.6 35 93-127 3-45 (108)
128 cd08403 C2B_Synaptotagmin-3-5- 97.6 0.00013 2.7E-09 51.3 5.5 39 8-48 82-120 (134)
129 KOG0696|consensus 97.6 1.3E-05 2.8E-10 67.8 0.2 46 4-50 243-288 (683)
130 cd08400 C2_Ras_p21A1 C2 domain 97.6 8.5E-05 1.8E-09 52.0 4.1 34 92-125 5-40 (126)
131 KOG1028|consensus 97.6 0.00015 3.2E-09 60.9 6.2 47 55-120 150-200 (421)
132 KOG0696|consensus 97.5 0.00017 3.6E-09 61.2 5.0 46 55-121 165-214 (683)
133 cd08410 C2B_Synaptotagmin-17 C 97.4 0.00036 7.8E-09 49.4 5.4 41 8-49 82-122 (135)
134 cd00276 C2B_Synaptotagmin C2 d 97.4 4.8E-05 1E-09 52.8 0.9 43 7-51 81-123 (134)
135 cd08408 C2B_Synaptotagmin-14_1 97.4 0.00042 9E-09 49.5 5.7 42 6-48 82-123 (138)
136 cd08406 C2B_Synaptotagmin-12 C 97.4 0.0004 8.7E-09 49.6 5.5 41 6-48 81-121 (136)
137 cd08692 C2B_Tac2-N C2 domain s 97.3 0.00056 1.2E-08 49.2 5.4 45 3-48 77-121 (135)
138 cd08375 C2_Intersectin C2 doma 97.3 0.00033 7E-09 49.9 3.9 36 92-127 16-55 (136)
139 COG5038 Ca2+-dependent lipid-b 97.3 0.00025 5.5E-09 65.3 4.1 66 5-71 1099-1164(1227)
140 cd08377 C2C_MCTP_PRT C2 domain 97.3 0.00041 8.9E-09 47.3 4.1 36 92-127 2-41 (119)
141 PLN02952 phosphoinositide phos 97.3 0.00089 1.9E-08 58.6 6.9 55 8-67 542-596 (599)
142 cd08383 C2A_RasGAP C2 domain ( 97.2 0.00048 1E-08 46.7 4.0 35 93-127 2-38 (117)
143 cd04016 C2_Tollip C2 domain pr 97.2 0.00047 1E-08 48.4 3.9 35 92-126 3-40 (121)
144 cd00030 C2 C2 domain. The C2 d 97.1 0.00078 1.7E-08 42.5 4.0 43 6-48 59-102 (102)
145 cd08395 C2C_Munc13 C2 domain t 97.1 0.00075 1.6E-08 47.4 3.9 20 98-117 8-29 (120)
146 cd04032 C2_Perforin C2 domain 97.1 0.0011 2.4E-08 47.0 4.7 36 92-127 29-67 (127)
147 COG5038 Ca2+-dependent lipid-b 97.0 0.0035 7.5E-08 58.1 8.8 98 2-104 493-593 (1227)
148 cd04041 C2A_fungal C2 domain f 97.0 0.0011 2.4E-08 45.1 3.8 34 93-126 3-44 (111)
149 cd08686 C2_ABR C2 domain in th 96.9 0.0029 6.3E-08 44.6 5.8 30 6-35 56-92 (118)
150 cd04047 C2B_Copine C2 domain s 96.9 0.0016 3.5E-08 43.9 4.2 27 94-120 4-33 (110)
151 cd04046 C2_Calpain C2 domain p 96.9 0.0014 3E-08 45.7 3.9 34 93-126 5-42 (126)
152 PLN02223 phosphoinositide phos 96.9 0.0028 6E-08 54.8 6.5 48 2-52 473-521 (537)
153 cd08409 C2B_Synaptotagmin-15 C 96.9 0.00058 1.3E-08 48.5 2.0 41 8-48 82-122 (137)
154 cd04015 C2_plant_PLD C2 domain 96.9 0.0013 2.8E-08 48.0 3.9 35 92-126 8-77 (158)
155 PLN02270 phospholipase D alpha 96.8 0.0031 6.6E-08 56.8 6.6 71 2-73 82-153 (808)
156 cd08391 C2A_C2C_Synaptotagmin_ 96.8 0.0015 3.3E-08 44.4 3.3 30 98-127 9-47 (121)
157 smart00239 C2 Protein kinase C 96.7 0.0019 4.1E-08 41.1 3.4 39 2-40 57-96 (101)
158 cd04048 C2A_Copine C2 domain f 96.6 0.0034 7.4E-08 43.1 4.4 27 94-120 4-33 (120)
159 cd04036 C2_cPLA2 C2 domain pre 96.5 0.0041 8.9E-08 42.6 4.0 29 98-126 8-42 (119)
160 PLN02228 Phosphoinositide phos 96.5 0.0089 1.9E-07 52.1 6.9 61 8-71 504-564 (567)
161 cd08676 C2A_Munc13-like C2 dom 96.3 0.0056 1.2E-07 44.7 4.1 28 92-119 29-60 (153)
162 PF00168 C2: C2 domain; Inter 96.2 0.0044 9.5E-08 38.7 2.4 33 93-125 1-40 (85)
163 KOG1328|consensus 96.1 0.0029 6.3E-08 56.5 2.0 49 23-72 257-305 (1103)
164 PLN02230 phosphoinositide phos 96.1 0.016 3.4E-07 50.9 6.4 42 8-52 541-582 (598)
165 cd04045 C2C_Tricalbin-like C2 96.1 0.0085 1.8E-07 41.5 3.8 33 93-125 3-40 (120)
166 PLN02222 phosphoinositide phos 96.0 0.021 4.6E-07 50.0 6.6 43 8-53 524-566 (581)
167 KOG0169|consensus 95.9 0.02 4.3E-07 51.1 6.0 39 2-40 680-719 (746)
168 cd04044 C2A_Tricalbin-like C2 95.8 0.014 3.1E-07 39.7 4.0 29 98-126 10-44 (124)
169 KOG0905|consensus 95.8 0.015 3.2E-07 54.4 4.9 48 55-123 1509-1560(1639)
170 cd04013 C2_SynGAP_like C2 doma 95.6 0.018 3.9E-07 41.9 3.9 36 89-126 9-46 (146)
171 cd04014 C2_PKC_epsilon C2 doma 95.5 0.017 3.8E-07 40.2 3.5 28 98-125 12-53 (132)
172 PF00168 C2: C2 domain; Inter 95.5 0.012 2.5E-07 36.7 2.3 25 6-30 61-85 (85)
173 cd04040 C2D_Tricalbin-like C2 95.4 0.028 6.1E-07 37.9 4.0 29 98-126 7-39 (115)
174 KOG1030|consensus 95.2 0.023 5.1E-07 42.3 3.5 36 92-127 6-46 (168)
175 KOG2059|consensus 95.1 0.035 7.7E-07 49.4 4.8 63 7-69 209-277 (800)
176 KOG1326|consensus 94.7 0.015 3.4E-07 53.2 1.6 30 10-39 941-970 (1105)
177 PLN02352 phospholipase D epsil 94.6 0.082 1.8E-06 47.6 5.8 65 4-73 69-135 (758)
178 KOG1031|consensus 92.9 0.24 5.1E-06 44.0 5.5 59 6-66 66-134 (1169)
179 PLN03200 cellulose synthase-in 92.2 0.16 3.5E-06 50.3 3.9 36 92-127 1981-2019(2102)
180 cd08682 C2_Rab11-FIP_classI C2 92.0 0.13 2.8E-06 35.5 2.3 22 106-127 18-39 (126)
181 cd08379 C2D_MCTP_PRT_plant C2 91.1 0.16 3.5E-06 35.8 2.1 22 106-127 22-43 (126)
182 cd08690 C2_Freud-1 C2 domain f 90.8 0.39 8.5E-06 35.2 3.9 16 102-117 16-34 (155)
183 KOG1327|consensus 90.5 0.99 2.2E-05 39.3 6.7 90 7-117 69-166 (529)
184 smart00239 C2 Protein kinase C 90.4 0.57 1.2E-05 29.3 4.0 33 93-125 2-41 (101)
185 cd08676 C2A_Munc13-like C2 dom 90.0 0.26 5.7E-06 35.9 2.4 25 23-48 129-153 (153)
186 cd04022 C2A_MCTP_PRT_plant C2 89.8 0.23 5.1E-06 34.2 1.9 22 106-127 19-40 (127)
187 cd00030 C2 C2 domain. The C2 d 89.7 0.62 1.3E-05 28.7 3.7 33 94-126 2-39 (102)
188 cd04025 C2B_RasA1_RasA4 C2 dom 89.2 0.67 1.5E-05 31.6 3.9 20 107-126 20-39 (123)
189 cd04021 C2_E3_ubiquitin_ligase 88.9 0.64 1.4E-05 32.1 3.7 29 98-126 10-41 (125)
190 cd05137 RasGAP_CLA2_BUD2 CLA2/ 88.2 0.86 1.9E-05 38.2 4.6 44 25-69 1-45 (395)
191 PF10358 NT-C2: N-terminal C2 87.5 4.8 0.0001 28.0 7.5 63 7-72 75-139 (143)
192 cd04024 C2A_Synaptotagmin-like 87.5 0.46 9.9E-06 32.3 2.2 23 105-127 21-43 (128)
193 cd04038 C2_ArfGAP C2 domain pr 87.1 0.38 8.3E-06 34.6 1.7 22 106-127 20-41 (145)
194 cd04017 C2D_Ferlin C2 domain f 86.8 0.51 1.1E-05 33.0 2.1 23 105-127 19-41 (135)
195 KOG0905|consensus 86.7 0.4 8.6E-06 45.4 1.9 49 2-50 1586-1635(1639)
196 cd04018 C2C_Ferlin C2 domain t 86.5 0.5 1.1E-05 34.3 2.0 21 106-126 33-53 (151)
197 cd08401 C2A_RasA2_RasA3 C2 dom 86.3 0.59 1.3E-05 32.2 2.2 22 106-127 20-42 (121)
198 KOG2060|consensus 86.0 0.9 1.9E-05 38.0 3.4 30 92-121 270-304 (405)
199 KOG1327|consensus 85.5 0.72 1.6E-05 40.1 2.8 35 4-38 202-236 (529)
200 PLN03008 Phospholipase D delta 85.2 1 2.2E-05 41.3 3.7 20 107-126 76-96 (868)
201 KOG1264|consensus 85.2 1.2 2.6E-05 41.0 4.0 62 8-72 1132-1193(1267)
202 cd04042 C2A_MCTP_PRT C2 domain 85.0 1.6 3.5E-05 29.6 3.9 20 107-126 20-40 (121)
203 cd04027 C2B_Munc13 C2 domain s 84.1 0.73 1.6E-05 31.8 1.9 22 106-127 20-41 (127)
204 cd04054 C2A_Rasal1_RasA4 C2 do 81.7 2.5 5.5E-05 28.8 3.8 20 107-126 20-40 (121)
205 cd08689 C2_fungal_Pkc1p C2 dom 81.3 2 4.3E-05 29.9 3.1 32 94-125 2-41 (109)
206 KOG1328|consensus 80.1 0.7 1.5E-05 42.0 0.6 32 7-38 1018-1049(1103)
207 cd08382 C2_Smurf-like C2 domai 79.2 4.2 9.2E-05 27.8 4.3 20 107-126 20-40 (123)
208 cd04049 C2_putative_Elicitor-r 78.2 3.1 6.7E-05 28.2 3.3 20 107-126 21-40 (124)
209 KOG1326|consensus 77.6 1.2 2.6E-05 41.5 1.3 29 7-35 675-703 (1105)
210 cd04037 C2E_Ferlin C2 domain f 77.4 2.9 6.2E-05 28.8 3.0 16 106-121 19-34 (124)
211 cd04051 C2_SRC2_like C2 domain 75.7 2.2 4.8E-05 29.0 2.0 22 105-126 18-40 (125)
212 PF01060 DUF290: Transthyretin 75.0 4.9 0.00011 25.8 3.4 26 6-31 10-35 (80)
213 cd08374 C2F_Ferlin C2 domain s 74.9 2.6 5.7E-05 30.1 2.3 21 107-127 24-47 (133)
214 PF14924 DUF4497: Protein of u 71.2 13 0.00029 25.3 5.1 60 8-69 29-105 (112)
215 PF12416 DUF3668: Cep120 prote 70.6 18 0.0004 29.8 6.5 67 6-72 63-136 (340)
216 KOG1011|consensus 69.6 4.8 0.0001 36.5 3.1 40 86-125 289-333 (1283)
217 cd08397 C2_PI3K_class_III C2 d 67.8 18 0.00038 26.4 5.4 48 7-70 78-125 (159)
218 PLN02964 phosphatidylserine de 67.6 2.9 6.3E-05 37.3 1.4 65 8-72 109-176 (644)
219 KOG1013|consensus 66.9 0.75 1.6E-05 37.9 -2.2 47 58-123 79-129 (362)
220 KOG1011|consensus 63.9 5.1 0.00011 36.3 2.2 56 9-65 1196-1251(1283)
221 KOG2060|consensus 59.1 3.1 6.8E-05 34.9 0.0 49 4-52 331-381 (405)
222 PF07162 B9-C2: Ciliary basal 59.1 18 0.0004 26.4 4.1 25 9-33 77-101 (168)
223 PRK14296 chaperone protein Dna 58.9 65 0.0014 26.6 7.8 82 9-120 257-345 (372)
224 PRK14297 chaperone protein Dna 51.7 1.1E+02 0.0023 25.3 8.0 82 9-120 256-342 (380)
225 PRK14299 chaperone protein Dna 51.4 78 0.0017 25.2 6.9 85 9-123 185-273 (291)
226 PF00792 PI3K_C2: Phosphoinosi 50.9 40 0.00087 23.6 4.7 31 7-37 52-86 (142)
227 PF06775 Seipin: Putative adip 50.8 83 0.0018 23.5 6.6 47 27-73 40-91 (199)
228 PRK14283 chaperone protein Dna 49.2 1.3E+02 0.0029 24.8 8.1 82 9-120 254-340 (378)
229 PF15627 CEP76-C2: CEP76 C2 do 48.3 62 0.0013 23.8 5.4 67 5-71 84-153 (156)
230 cd08689 C2_fungal_Pkc1p C2 dom 47.8 13 0.00028 25.9 1.6 31 6-37 57-87 (109)
231 cd08380 C2_PI3K_like C2 domain 47.2 41 0.00089 23.9 4.3 31 7-37 76-108 (156)
232 PRK14301 chaperone protein Dna 47.1 1.6E+02 0.0036 24.3 8.8 83 9-121 248-335 (373)
233 PLN02270 phospholipase D alpha 43.9 32 0.00069 31.7 3.9 29 92-120 9-59 (808)
234 KOG3837|consensus 41.0 62 0.0014 27.9 4.9 65 8-74 444-509 (523)
235 COG0484 DnaJ DnaJ-class molecu 40.2 1.5E+02 0.0033 24.9 7.1 82 10-121 249-335 (371)
236 cd08684 C2A_Tac2-N C2 domain f 39.4 26 0.00056 24.0 2.0 37 7-46 65-101 (103)
237 cd04012 C2A_PI3K_class_II C2 d 38.6 60 0.0013 23.6 4.1 47 7-69 81-136 (171)
238 PRK14286 chaperone protein Dna 38.5 2.2E+02 0.0049 23.4 7.9 83 9-121 254-342 (372)
239 cd08683 C2_C2cd3 C2 domain fou 37.4 37 0.00081 24.7 2.7 33 8-40 92-134 (143)
240 PRK14278 chaperone protein Dna 36.1 2.3E+02 0.0049 23.5 7.6 83 9-120 247-334 (378)
241 PRK10266 curved DNA-binding pr 34.9 2.4E+02 0.0051 22.6 7.5 83 9-121 193-278 (306)
242 TIGR03835 termin_org_DnaJ term 34.2 2.4E+02 0.0052 26.4 7.8 83 10-122 731-817 (871)
243 PRK14289 chaperone protein Dna 34.1 2.4E+02 0.0052 23.3 7.4 82 9-120 262-348 (386)
244 PRK14277 chaperone protein Dna 33.6 2.8E+02 0.006 23.0 8.5 83 9-121 263-350 (386)
245 cd08398 C2_PI3K_class_I_alpha 33.1 60 0.0013 23.7 3.3 30 92-121 9-39 (158)
246 PRK14284 chaperone protein Dna 32.8 2.9E+02 0.0062 22.9 8.3 85 9-121 262-351 (391)
247 PRK14276 chaperone protein Dna 32.1 2.9E+02 0.0063 22.8 8.3 82 9-120 254-340 (380)
248 PLN02223 phosphoinositide phos 31.9 91 0.002 27.5 4.7 29 92-120 410-447 (537)
249 PRK14294 chaperone protein Dna 31.2 3E+02 0.0064 22.6 8.4 82 9-120 248-334 (366)
250 PRK14287 chaperone protein Dna 29.9 3.2E+02 0.0069 22.5 8.3 83 9-121 246-333 (371)
251 PRK14293 chaperone protein Dna 28.7 3.3E+02 0.0072 22.4 7.7 83 9-121 251-339 (374)
252 PF08530 PepX_C: X-Pro dipepti 28.6 79 0.0017 23.5 3.4 31 4-34 107-137 (218)
253 PF15146 FANCAA: Fanconi anemi 28.0 2.3E+02 0.0051 24.3 6.3 47 6-52 92-141 (435)
254 PRK10767 chaperone protein Dna 28.0 3.4E+02 0.0074 22.3 8.0 82 9-120 246-332 (371)
255 KOG1264|consensus 27.3 1E+02 0.0022 29.1 4.3 37 91-127 1065-1104(1267)
256 KOG4027|consensus 27.0 81 0.0018 23.7 3.1 26 9-34 84-109 (187)
257 cd08687 C2_PKN-like C2 domain 26.5 1.7E+02 0.0036 20.0 4.3 49 5-67 44-92 (98)
258 PF11618 DUF3250: Protein of u 24.9 2.1E+02 0.0046 19.5 4.7 57 8-67 46-104 (107)
259 PRK14279 chaperone protein Dna 23.9 4.3E+02 0.0092 22.0 8.4 83 9-121 277-363 (392)
260 PRK14290 chaperone protein Dna 22.7 4.3E+02 0.0094 21.6 7.5 81 10-120 255-340 (365)
261 PRK14280 chaperone protein Dna 21.9 4.6E+02 0.0099 21.6 8.1 82 9-120 251-337 (376)
262 PRK14298 chaperone protein Dna 21.4 4.7E+02 0.01 21.6 8.4 83 9-121 249-336 (377)
263 KOG0241|consensus 21.4 1.4E+02 0.0029 28.9 4.0 97 19-117 766-868 (1714)
264 PRK14281 chaperone protein Dna 20.7 5E+02 0.011 21.6 8.2 83 9-121 270-357 (397)
265 PF09922 DUF2154: Cell wall-ac 20.4 1.7E+02 0.0038 19.7 3.6 31 9-39 7-37 (115)
No 1
>KOG1028|consensus
Probab=99.82 E-value=8.9e-20 Score=151.83 Aligned_cols=101 Identities=26% Similarity=0.362 Sum_probs=87.5
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCC-CCCcccEEEEEEEecCcchhhhccccccc
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP-EENLGDIYLSATLYPRSQEDRDQEASGTS 83 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~-~~~~G~I~l~L~~~p~~~~~~~~~~~~~~ 83 (130)
...++|+|.|||+|||++||+||++.+||..++....+.+|.+|...... .+.+|+|+++|||.|.++
T Consensus 230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g----------- 298 (421)
T KOG1028|consen 230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG----------- 298 (421)
T ss_pred hccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC-----------
Confidence 46789999999999999999999999999999999999999999875322 334479999999999986
Q ss_pred cccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCccccc
Q psy16587 84 ESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDR 124 (130)
Q Consensus 84 ~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~ 124 (130)
+|+|.| +||||+.++ .+|||||+++.+..++.+
T Consensus 299 --------~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~ 335 (421)
T KOG1028|consen 299 --------RLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLS 335 (421)
T ss_pred --------eEEEEEEEecCCCcccCCCCCCccEEEEEecCCceee
Confidence 886666 999999775 889999999999885544
No 2
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.41 E-value=9.4e-13 Score=91.51 Aligned_cols=67 Identities=54% Similarity=0.807 Sum_probs=60.4
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
++.++.+.|.|+|||+|++++||+||.+.++|+++..++..+.|++|.+.++ .+.+|+|+|.++|.|
T Consensus 55 ~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 55 PIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred EecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence 3556678999999999999999999999999999999999999999987654 467999999999987
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.38 E-value=1e-12 Score=92.69 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=56.0
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCc-cccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLT-TLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~-~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
++.+....|.|+|||+|.+++||+||++.|||. .+..++..+.|++|.+.++ ....|+|||+|+|
T Consensus 56 ~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~-~~~~g~i~l~l~y 121 (121)
T cd04016 56 TLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQG-EDKEGMINLVFSY 121 (121)
T ss_pred EecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccC-CCCceEEEEEEeC
Confidence 455666889999999999999999999999996 6788888999999987443 3567999999997
No 4
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.30 E-value=1.4e-11 Score=86.76 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=56.6
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCC-CCCCcccEEEEEEEecC
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK-PEENLGDIYLSATLYPR 70 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~-~~~~~G~I~l~L~~~p~ 70 (130)
..|.|.|||+|.+++||+||++.|||+++..++..+.|++|+.... .....|+|+|+|+|.+.
T Consensus 62 ~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 62 NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 5799999999999999999999999999999999999999987542 35778999999999874
No 5
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.25 E-value=2e-11 Score=85.53 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=56.8
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
+|.+....|.|.|||+|++++||+||++.++|+++..++..+.|++|+......+..|+|||+++|
T Consensus 56 ~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 56 EIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 355556899999999999999999999999999999999999999998654334568999999875
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.09 E-value=3.9e-10 Score=77.44 Aligned_cols=56 Identities=38% Similarity=0.580 Sum_probs=51.9
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEe
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~ 68 (130)
.+.|.|.|||+|.+++|++||++.++|+++..++..+.|++|++. .|.|++.++|+
T Consensus 60 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 60 SQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred CCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC------CcEEEEEEEec
Confidence 689999999999999999999999999999999999999999873 39999999885
No 7
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.08 E-value=8.7e-10 Score=77.09 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=58.4
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcc
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQ 72 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~ 72 (130)
..+.|.|+|||+|.+++||+||++.++|+++..++....|++|.+.+. ....|+|+++++|.|..+
T Consensus 55 ~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~-~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 55 PDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNG-RPTGATISLEVSYQPPDG 120 (127)
T ss_pred CCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCC-CcccEEEEEEEEEeCCCC
Confidence 578999999999999999999999999999999999999999986544 234699999999999775
No 8
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.08 E-value=2.8e-10 Score=79.60 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=51.4
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCcccc--CCceeEEEEecCCCCC-CCCCcccEEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLE--LGRCTDLILTLEDPNK-PEENLGDIYLSAT 66 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~--~~~~~~~~~~L~~~~~-~~~~~G~I~l~L~ 66 (130)
....|.|.|||+|++++||+||++.|+|+++. .+.....|++|.+..+ .....|+|+|+++
T Consensus 63 ~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 46789999999999989999999999999998 5677889999986432 2456899999873
No 9
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.07 E-value=7.1e-10 Score=77.62 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=58.4
Q ss_pred cCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCC-CCCCcccEEEEEEEecCc
Q psy16587 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK-PEENLGDIYLSATLYPRS 71 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~-~~~~~G~I~l~L~~~p~~ 71 (130)
+....+.|.|+|||+|.+++||+||++.++|+++..+...+.|++|+.... .....|+|.+.+.|.+..
T Consensus 54 ~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 54 LSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred eCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 444567899999999999999999999999999998888889999986422 135689999999998754
No 10
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.06 E-value=4.2e-10 Score=79.31 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=37.5
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCCCCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEENLGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~~~dpyVk~~L~~~ 119 (130)
|+|+++|+|.|+.+ .|+|.| +|+||+..+.+|||||++|++.
T Consensus 1 ~~l~fsL~Y~~~~~-------------------~L~V~vikA~~L~~~g~sDPYVKv~L~~~ 43 (118)
T cd08677 1 PKLHYSLSYDKQKA-------------------ELHVNILEAENISVDAGCECYISGCVSVS 43 (118)
T ss_pred CeEEEEEEEcCcCC-------------------EEEEEEEEecCCCCCCCCCeEEEEEEcCC
Confidence 68999999999996 788888 9999996668999999999874
No 11
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.03 E-value=4.4e-10 Score=78.86 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=55.1
Q ss_pred cCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCce------eEEEEecCCCCCCCCCcccEEEEEEEe
Q psy16587 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRC------TDLILTLEDPNKPEENLGDIYLSATLY 68 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~------~~~~~~L~~~~~~~~~~G~I~l~L~~~ 68 (130)
+......|.|+|||+|.+++||+||++.++++++..... .+.|++|++..+..+..|+|+++++|.
T Consensus 62 ~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 334467899999999999999999999999999997654 358999987554456799999999984
No 12
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.03 E-value=5.7e-10 Score=80.31 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=38.1
Q ss_pred cEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCccc
Q psy16587 60 DIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRSQE 122 (130)
Q Consensus 60 ~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~ 122 (130)
+|+++|||.|+++ +|+|+| +|+|||++. .+|||||++|.+.+++
T Consensus 2 el~~sL~Y~p~~~-------------------rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~ 49 (135)
T cd08692 2 ELQLGTCFQAVNS-------------------RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL 49 (135)
T ss_pred eEEEEeeecCcCC-------------------eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc
Confidence 7999999999997 787777 999999874 5599999999986665
No 13
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.99 E-value=1.1e-09 Score=78.83 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=39.1
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC-----CCCcEEEEEEccCccc
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN-----LGDIYLSATLYPRSQE 122 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~-----~~dpyVk~~L~~~~~~ 122 (130)
|+|+|+|+|.|..+ +|+|.+ +|+||+.++ .+|||||++|++..++
T Consensus 2 Gel~~sL~Y~~~~~-------------------~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 2 GEVLLSISYLPAAN-------------------RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CEEEEEEEEeCCCC-------------------eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcc
Confidence 99999999999996 897777 999999775 3799999999997654
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.99 E-value=1.4e-09 Score=79.11 Aligned_cols=71 Identities=21% Similarity=0.120 Sum_probs=57.7
Q ss_pred CcCCC-CceEEEEEEeCCCCCCCCcceEEEEeCccccCC----ceeEEEEecCCCCC------CCCCcccEEEEEEEecC
Q psy16587 2 PETTS-GLVVELQVFDYDWGLQDDFMGSASIDLTTLELG----RCTDLILTLEDPNK------PEENLGDIYLSATLYPR 70 (130)
Q Consensus 2 ~~~~~-~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~----~~~~~~~~L~~~~~------~~~~~G~I~l~L~~~p~ 70 (130)
++.++ ...|.|.|||+|..++||+||++.|||+++..+ ...+.|++|+++.+ .....|+|+|+++|.+.
T Consensus 55 ~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 55 VAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 34443 468999999999988999999999999999753 45689999997642 24567999999999987
Q ss_pred cc
Q psy16587 71 SQ 72 (130)
Q Consensus 71 ~~ 72 (130)
++
T Consensus 135 ~~ 136 (150)
T cd04019 135 YH 136 (150)
T ss_pred ce
Confidence 74
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.99 E-value=8.7e-10 Score=76.06 Aligned_cols=64 Identities=20% Similarity=0.376 Sum_probs=52.5
Q ss_pred cCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeE-EEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTD-LILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~-~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
+....+.|.|+|||+|.+++|++||++.++|+++..+...+ .+..+.. .+...|+|+++|+|.|
T Consensus 60 v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 60 VNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred eCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhc---CCccceEEEEEEEeCC
Confidence 44567899999999999999999999999999999877664 4444543 2356799999999987
No 16
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.98 E-value=1.1e-09 Score=75.27 Aligned_cols=62 Identities=27% Similarity=0.212 Sum_probs=51.7
Q ss_pred CcCCC-CceEEEEEEeCCCCCCCCcceEEEEeCcccc-CCceeEEEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 2 PETTS-GLVVELQVFDYDWGLQDDFMGSASIDLTTLE-LGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 2 ~~~~~-~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~-~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
++.++ .+.|.|.|||+|.+ +||+||++.++|+++- .....+.|++|++. ..|.|++++.|.|
T Consensus 47 ~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 47 LVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred EecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 34443 57799999999999 9999999999999984 34556899999863 3499999999998
No 17
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.98 E-value=1.8e-09 Score=75.54 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=52.6
Q ss_pred CceEEEEEEeCCCCC-CCCcceEEEEeCcccc-CCceeEEEEecCCCCCCCCCcccEEEEEEEe
Q psy16587 7 GLVVELQVFDYDWGL-QDDFMGSASIDLTTLE-LGRCTDLILTLEDPNKPEENLGDIYLSATLY 68 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~-~dD~iG~~~i~L~~v~-~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~ 68 (130)
...|.|.|||+|++. +|||||++.++|+++. .+.....|++|+.....+...|+|+|++.++
T Consensus 63 ~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 63 NLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 357999999999986 8999999999999998 4667789999987543345789999999875
No 18
>KOG1030|consensus
Probab=98.98 E-value=3.2e-10 Score=84.02 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=39.6
Q ss_pred CCcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEE
Q psy16587 1 MPETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDL 44 (130)
Q Consensus 1 ~~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~ 44 (130)
|+|.|+..+|.+.|||+|+|++|||||+|.|||..+-..+....
T Consensus 59 f~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 59 FTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred EEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence 57899999999999999999999999999999999887665554
No 19
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.97 E-value=6e-10 Score=78.53 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=39.3
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
...+|.|.|||||+|++||+||++.++|++++.+...+.|.+|
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 4678999999999999999999999999999888888888765
No 20
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=98.96 E-value=1e-09 Score=75.59 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=50.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
..+.|.|+|||+|..+ |++||++.++|+++..+...+.|++|... +...|+|+|+|+|
T Consensus 61 ~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~~~~G~i~l~l~f 118 (118)
T cd08681 61 KKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLK---GRYAGEVYLELTF 118 (118)
T ss_pred CCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccC---CcEeeEEEEEEEC
Confidence 4578999999999885 99999999999999877778899999863 3578999999987
No 21
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.96 E-value=1.7e-09 Score=77.51 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=38.1
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRS 120 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~ 120 (130)
.|+|+|+|+|.|..+ .|+|.+ +|+||+.++ .+|||||++|.+.+
T Consensus 1 ~G~i~~sL~Y~~~~~-------------------~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~ 48 (136)
T cd08406 1 VGEILLSLSYLPTAE-------------------RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDG 48 (136)
T ss_pred CcEEEEEEEEcCCCC-------------------EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCC
Confidence 499999999999886 787777 999999654 78999999997754
No 22
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.94 E-value=3e-09 Score=73.86 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=51.4
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccC---CceeEEEEecCCCCC--CCCCcccEEEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLEL---GRCTDLILTLEDPNK--PEENLGDIYLSATL 67 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~---~~~~~~~~~L~~~~~--~~~~~G~I~l~L~~ 67 (130)
..+.|.|+|||+|.+++||+||++.++|+++.. ......|+.|++... .....|+|+|+++|
T Consensus 62 ~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 62 QNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 578999999999999899999999999999973 355689999987532 13468999999975
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.93 E-value=2.8e-09 Score=75.63 Aligned_cols=63 Identities=25% Similarity=0.294 Sum_probs=53.2
Q ss_pred CCcCCCCceEEEEEEeCCCCC------CCCcceEEEEeCccccCCceeEEEEecCCCC-CCCCCcccEEE
Q psy16587 1 MPETTSGLVVELQVFDYDWGL------QDDFMGSASIDLTTLELGRCTDLILTLEDPN-KPEENLGDIYL 63 (130)
Q Consensus 1 ~~~~~~~~~L~~~V~D~D~~~------~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~-~~~~~~G~I~l 63 (130)
|++.++...|.|+|||+|.++ +||+||++.|||+++..+...+.|++|.+.+ +..+..|+|++
T Consensus 56 f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 56 WPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 356677889999999999874 9999999999999999999999999998654 22567888875
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.93 E-value=3.5e-09 Score=74.11 Aligned_cols=60 Identities=27% Similarity=0.405 Sum_probs=51.4
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCce-----eEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRC-----TDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~-----~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
....|.|.|||+|.+ +||+||++.++|+++...+. ...|++|++..+ ....|+|+|++.|
T Consensus 55 ~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 55 QGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred cCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 467899999999988 99999999999999987543 468999988654 5678999999987
No 25
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=98.92 E-value=6.6e-09 Score=71.83 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=50.1
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEe
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~ 68 (130)
...|.|+|||+|.+ +||+||++.+||+++..+.....|++|+... .|+|++++.+.
T Consensus 63 ~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~-----~g~l~~~~~~~ 118 (119)
T cd04036 63 KNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQG-----KEELEVEFLLE 118 (119)
T ss_pred CCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCCC-----CceEEEEEEee
Confidence 45799999999999 9999999999999999999999999998743 49999998763
No 26
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.91 E-value=4.9e-09 Score=71.98 Aligned_cols=57 Identities=37% Similarity=0.525 Sum_probs=50.9
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
...+.|.|.|||+|.+ +||+||++.++|+++..++..+.|++|.+... |+|++++.|
T Consensus 65 ~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~~~~~~~~ 121 (121)
T cd08391 65 VPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKS-----GRLHLKLEW 121 (121)
T ss_pred CCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCCCC-----ceEEEEEeC
Confidence 3578999999999999 99999999999999998888899999997544 999999865
No 27
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.87 E-value=8.1e-09 Score=70.90 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=53.2
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
++.+..+.|.|+|||+|.+++||+||++.++|.++..+. ..|+.|.++.......|.|+|++.+
T Consensus 55 ~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 55 PIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 345667899999999999889999999999999987554 5799998765445578999999876
No 28
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.87 E-value=1e-08 Score=75.06 Aligned_cols=66 Identities=23% Similarity=0.144 Sum_probs=56.1
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCC-CCCcccEEEEEEEe
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP-EENLGDIYLSATLY 68 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~-~~~~G~I~l~L~~~ 68 (130)
++.++.+.|.|.|||+|.+ .+|+||.+.+||+++..+...+.|++|.++.+. ....|.|+++++|.
T Consensus 92 ~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 92 YCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred EccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 3556778999999999988 579999999999999999999999999875433 45579999999984
No 29
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.86 E-value=8.2e-09 Score=73.77 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=47.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccC-----CceeEEEEecCCCCCCCCCcccEEEEEEEe
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLEL-----GRCTDLILTLEDPNKPEENLGDIYLSATLY 68 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~-----~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~ 68 (130)
...|.|+|||+|.+++||+||++.++|+++.. ......|+.|... ..|+|+|+++|.
T Consensus 75 ~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-----~~g~i~l~~~~~ 136 (136)
T cd08375 75 QDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEV-----PTGEVVVKLDLQ 136 (136)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccc-----cceeEEEEEEeC
Confidence 46899999999999999999999999999986 4445567777653 459999999873
No 30
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.83 E-value=1.1e-08 Score=71.32 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=52.0
Q ss_pred cCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCC-ceeEEEEecCCCCCCCCCcccEEEEEE
Q psy16587 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELG-RCTDLILTLEDPNKPEENLGDIYLSAT 66 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~-~~~~~~~~L~~~~~~~~~~G~I~l~L~ 66 (130)
+....+.|.|.|||+|.+++||+||++.+++..+... +..+.|++|++........|+|++.++
T Consensus 56 ~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 56 LPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred eCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 4455689999999999999999999999999988753 347899999864433456799999875
No 31
>PLN03008 Phospholipase D delta
Probab=98.82 E-value=1.1e-08 Score=91.13 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCC-CCCcccEEEEEEEecCcch
Q psy16587 1 MPETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP-EENLGDIYLSATLYPRSQE 73 (130)
Q Consensus 1 ~~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~-~~~~G~I~l~L~~~p~~~~ 73 (130)
|++.++...|.|+|||+|.++ +|+||++.|||+++..+...+.|++|-+..++ ....|.|+++|.|.|...+
T Consensus 110 f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 110 ISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEcccc
Confidence 356778889999999999994 79999999999999999999999999776543 3456899999999996653
No 32
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.79 E-value=2.2e-08 Score=70.49 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=51.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccC--CceeEEEEecCCCCCCCCCcccEEEEEEEecC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLEL--GRCTDLILTLEDPNKPEENLGDIYLSATLYPR 70 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~--~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~ 70 (130)
..+.|.|.|||+|.+++|++||++.++|+++.. +...+.|++|+. .|.|+++++|...
T Consensus 72 ~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~~ 131 (132)
T cd04014 72 NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKGS 131 (132)
T ss_pred CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEecC
Confidence 467899999999998899999999999999998 577899999984 2999999998763
No 33
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.78 E-value=1.6e-08 Score=72.08 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=37.6
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC--CCCcEEEEEEccC
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN--LGDIYLSATLYPR 119 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~--~~dpyVk~~L~~~ 119 (130)
+|+|+|+|+|.|..+ .|+|.+ +|+||+.++ .+|||||++|.+.
T Consensus 1 ~G~i~~sl~y~~~~~-------------------~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~ 46 (137)
T cd08409 1 LGDIQISLTYNPTLN-------------------RLTVVVLRARGLRQLDHAHTSVYVKVSLMIH 46 (137)
T ss_pred CcEEEEEEEECCCCC-------------------eEEEEEEEecCCCcccCCCCCeEEEEEEEEC
Confidence 599999999999885 787777 999999664 7899999999875
No 34
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.78 E-value=1.8e-08 Score=70.94 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=42.3
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP 51 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~ 51 (130)
....|+|.|||||++++||+||++.+||+++..++..+.|++|+.+
T Consensus 68 ~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 68 ESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 3467999999999998999999999999999999999999999874
No 35
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.77 E-value=2.4e-08 Score=70.10 Aligned_cols=50 Identities=14% Similarity=0.305 Sum_probs=40.2
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC----CCCcEEEEEEccCc-----ccccce
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN----LGDIYLSATLYPRS-----QEDRDQ 126 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~----~~dpyVk~~L~~~~-----~~s~~~ 126 (130)
.|+|+|+|+|.+..+ .|.|.+ +|+||++++ .+|||||++|.+.. +||+++
T Consensus 1 ~G~i~~sl~y~~~~~-------------------~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~ 60 (125)
T cd08393 1 QGSVQFALDYDPKLR-------------------ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVK 60 (125)
T ss_pred CcEEEEEEEEECCCC-------------------EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccC
Confidence 399999999999875 787777 999999764 67999999997543 455554
No 36
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.75 E-value=2e-08 Score=73.01 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=45.5
Q ss_pred cCCCCceEEEEEE-eCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCC
Q psy16587 3 ETTSGLVVELQVF-DYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK 53 (130)
Q Consensus 3 ~~~~~~~L~~~V~-D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~ 53 (130)
|...+.+|.|.|| |+|+++++||||++.|+|++++.++....|++|.+..+
T Consensus 90 v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 90 VSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred EcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 4456789999999 79999999999999999999999999999999987543
No 37
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.75 E-value=2.1e-08 Score=70.37 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=41.9
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
...+|+|.|||+|+++++|+||++.|||+++++++....|++|++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 457899999999999999999999999999999999999999973
No 38
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.74 E-value=3.8e-08 Score=69.73 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=49.2
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEE-eCccccC---CceeEEEEecCCCCCCCCCcccEEEEEEEecC
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASI-DLTTLEL---GRCTDLILTLEDPNKPEENLGDIYLSATLYPR 70 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i-~L~~v~~---~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~ 70 (130)
..|.|+|||+|.+++||+||++.+ |+..+.. ..+...|++|... ....|+|++++.+.|.
T Consensus 71 ~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~~~~Geil~~~~~~~~ 134 (135)
T cd04017 71 PLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---GQSAGELLAAFELIEV 134 (135)
T ss_pred CEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC---CCchhheeEEeEEEEe
Confidence 579999999999999999999987 5555543 4677899999753 3478999999999874
No 39
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.74 E-value=3.1e-08 Score=69.62 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=36.5
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCC----CCCCcEEEEEEccCc
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEE----NLGDIYLSATLYPRS 120 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~----~~~dpyVk~~L~~~~ 120 (130)
|+|+|+|+|.+..+ .|+|.| +|+||++. +.+|||||+++.+..
T Consensus 2 G~i~~sl~y~~~~~-------------------~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~ 49 (125)
T cd04029 2 GEILFSLSYDYKTQ-------------------SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDK 49 (125)
T ss_pred cEEEEEEEEECCCC-------------------eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCC
Confidence 99999999999886 787777 99999854 378999999997543
No 40
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.73 E-value=3.6e-08 Score=69.78 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=37.7
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCC----CCCCcEEEEEEccCc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEE----NLGDIYLSATLYPRS 120 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~----~~~dpyVk~~L~~~~ 120 (130)
.|+|.|+|+|.+..+ .|+|.+ +|+||+++ +.+|||||++|.+..
T Consensus 1 ~G~i~~sl~Y~~~~~-------------------~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~ 49 (128)
T cd08392 1 TGEIEFALHYNFRTS-------------------CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDK 49 (128)
T ss_pred CcEEEEEEEEeCCCC-------------------EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCC
Confidence 499999999999885 788888 99999865 467999999998653
No 41
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.71 E-value=6.8e-08 Score=67.09 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=49.1
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCC---ceeEEEEecCCCCCCCCCcccEEEEEEEecCc
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELG---RCTDLILTLEDPNKPEENLGDIYLSATLYPRS 71 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~---~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~ 71 (130)
...|.|.|||+|.++++++||++.++|+.+..+ ...+.|++|.. . |.|++.++|.-..
T Consensus 64 ~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~-----g~i~l~~~~~~~~ 124 (126)
T cd04043 64 PLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--Q-----GRLLLRVSMEGER 124 (126)
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--C-----CeEEEEEEEeeec
Confidence 578999999999998999999999999987553 36689999975 2 9999999987543
No 42
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.69 E-value=4.6e-08 Score=69.47 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=36.3
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
|+|+++|+|.|..+ .|.|.+ +|+||+.++ .+||||++++.+.
T Consensus 1 G~i~~~l~y~~~~~-------------------~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~ 46 (135)
T cd08410 1 GELLLSLNYLPSAG-------------------RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHG 46 (135)
T ss_pred CcEEEEEEECCCCC-------------------eEEEEEEEecCCCcccCCCCCCeEEEEEEEcC
Confidence 89999999999886 677777 999999764 7899999998553
No 43
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.69 E-value=5.8e-08 Score=67.96 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=34.6
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC--CCCcEEEEEEccC
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN--LGDIYLSATLYPR 119 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~--~~dpyVk~~L~~~ 119 (130)
+|+|+|+|+|. .+ .|+|.+ +|+||+.++ .+|||||++|++.
T Consensus 1 ~G~l~~~l~y~--~~-------------------~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~ 44 (122)
T cd08381 1 GGQVKLSISYK--NG-------------------TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPD 44 (122)
T ss_pred CCeEEEEEEEe--CC-------------------EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeC
Confidence 49999999999 33 687777 999999765 7899999999854
No 44
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.69 E-value=4e-08 Score=70.39 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=36.9
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
|+|+++|+|.+..+ .|+|.| +|+||+.++ .+|||||++|.+.
T Consensus 2 ~ei~~sL~Y~~~~~-------------------~L~V~VikarnL~~~~~~~~~dpyVkv~llp~ 47 (138)
T cd08408 2 PELLLGLEYNALTG-------------------RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS 47 (138)
T ss_pred CeEEEEeEEcCCCC-------------------eEEEEEEEecCCCccccCCCCCeeEEEEEEeC
Confidence 89999999999886 787887 999999764 7899999999863
No 45
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.69 E-value=4.8e-08 Score=67.77 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=49.6
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCC----CCCCCcccEEEEE
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPN----KPEENLGDIYLSA 65 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~----~~~~~~G~I~l~L 65 (130)
...|.|+|||+|.+++||+||++.++|+++..+...+.|+.|.+.. .+...+|.|.|.+
T Consensus 60 ~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 60 DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 5689999999999999999999999999998888889999997532 2256788888765
No 46
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.68 E-value=6.3e-08 Score=70.44 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=41.4
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCC-ceeEEEEecCCCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELG-RCTDLILTLEDPN 52 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~-~~~~~~~~L~~~~ 52 (130)
...|+|.|||+|++++|||||++.|||+.+..+ +....|++|++..
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 368999999999999999999999999999987 6789999997643
No 47
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.68 E-value=3.2e-08 Score=69.41 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=40.0
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
...|.|.|||+|++++||+||++.|||++++..+....|++|+
T Consensus 83 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 83 TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 4689999999999999999999999999999998889999874
No 48
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.67 E-value=3.8e-08 Score=69.19 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=40.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
...|.|.|||+|++++||+||++.|+|+++++.+..+.|++|.
T Consensus 83 ~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 83 TRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 5689999999999999999999999999999999999999884
No 49
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.67 E-value=1.1e-07 Score=69.94 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=52.0
Q ss_pred CceEEEEEEeCCCC-CCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 7 GLVVELQVFDYDWG-LQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 7 ~~~L~~~V~D~D~~-~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
...|.|+|||+|.| ++||+||++.++|+.++.+..+..|++|-+..+ .-.|.|++.++...
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k--~~Gg~l~v~ir~r~ 138 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK--ATGGKLEVKVRLRE 138 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCC--CcCCEEEEEEEecC
Confidence 46799999999987 579999999999999998888888999876433 56799999998655
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.66 E-value=7.5e-08 Score=67.94 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=39.7
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCC--ceeEEEEecCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELG--RCTDLILTLED 50 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~--~~~~~~~~L~~ 50 (130)
...|+|+|||+|++++||+||++.|||+++++. +...+|++|+.
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 357999999999999999999999999999987 77889998863
No 51
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.65 E-value=4.6e-08 Score=68.50 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=39.9
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
....|+|.|||+|++++||+||++.|||+++...+..+.|++|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3578999999999999999999999999999999888999987
No 52
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.65 E-value=4.4e-08 Score=68.04 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=47.4
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCcee-----EEEEecCCCCCCCCCcccEEE
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCT-----DLILTLEDPNKPEENLGDIYL 63 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~-----~~~~~L~~~~~~~~~~G~I~l 63 (130)
...|.|+|||++.+++||+||++.+||+++..+... ..|+.|..+. ....|.|+|
T Consensus 66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 689999999999988999999999999999976653 6899998765 377898875
No 53
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.65 E-value=8.2e-08 Score=69.84 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCcccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCC----CCCCcEEEEEEccCc
Q psy16587 56 ENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEE----NLGDIYLSATLYPRS 120 (130)
Q Consensus 56 ~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~----~~~dpyVk~~L~~~~ 120 (130)
..+|+|+|+|+|. .+ .|+|.| +|+||+.+ +.+|||||++|.+..
T Consensus 15 ~~~G~l~lsl~y~--~~-------------------~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~ 63 (146)
T cd04028 15 PSMGDIQLGLYDK--KG-------------------QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGK 63 (146)
T ss_pred CCcceEEEEEEeC--CC-------------------EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCC
Confidence 4579999999993 33 687777 99999864 268999999998764
No 54
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.65 E-value=7.1e-08 Score=68.17 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=37.2
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
+|+|+++|.|.|..+ .|.|.+ +|+||+.++ .+||||++++.+.
T Consensus 1 ~G~l~~~l~y~~~~~-------------------~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~ 47 (136)
T cd08402 1 LGDICFSLRYVPTAG-------------------KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 47 (136)
T ss_pred CcEEEEEeEEcCCCC-------------------eEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC
Confidence 599999999999886 687777 999999764 7899999999753
No 55
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.64 E-value=6.1e-08 Score=67.24 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=40.7
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
+..|.|+|||+|++++||+||++.+||+++..+...+.|+.|+.
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEccC
Confidence 46899999999999999999999999999999888999999863
No 56
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.63 E-value=9.8e-08 Score=66.27 Aligned_cols=50 Identities=28% Similarity=0.408 Sum_probs=40.6
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC-----cccccce
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR-----SQEDRDQ 126 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~-----~~~s~~~ 126 (130)
+|+|.|+|.|.+..+ .|.|.+ +|+||+.++ .+||||++++.+. .++|+++
T Consensus 2 ~G~l~~~l~y~~~~~-------------------~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~ 60 (127)
T cd04030 2 LGRIQLTIRYSSQRQ-------------------KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVK 60 (127)
T ss_pred CeEEEEEEEEeCCCC-------------------EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccc
Confidence 599999999999885 787777 999999664 7899999999753 3455543
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.63 E-value=1.1e-07 Score=67.15 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=37.3
Q ss_pred cEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCcc
Q psy16587 60 DIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRSQ 121 (130)
Q Consensus 60 ~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~ 121 (130)
+|+|+|.|.|..+ .|+|.| +|+||++++ .+|||||++|.+...
T Consensus 2 ~i~~sL~Y~~~~~-------------------~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~ 48 (124)
T cd08680 2 QVQIGLRYDSGDS-------------------SLVISVEQLRNLSALSIPENSKVYVRVALLPCSS 48 (124)
T ss_pred eEEEEEEECCCCC-------------------EEEEEEeEecCCcccccCCCCCeEEEEEEccCCC
Confidence 6899999999986 787777 999999763 789999999998664
No 58
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.61 E-value=9.2e-08 Score=66.43 Aligned_cols=43 Identities=21% Similarity=0.399 Sum_probs=40.4
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
...|.|+|||+|.+++||+||++.++|+++..++..+.|+.|+
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 4689999999999999999999999999999999999999986
No 59
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.61 E-value=2.7e-07 Score=64.61 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=49.7
Q ss_pred cCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCC--CCCCCCcccEEEEEEEecC
Q psy16587 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP--NKPEENLGDIYLSATLYPR 70 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~--~~~~~~~G~I~l~L~~~p~ 70 (130)
+.+..+.|.|+|||+|.+ +||+||++.++++.+.. ....+++|+.. .......|.|.+++++.+.
T Consensus 58 ~~~~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 58 RKKPRSPIKIQVWNSNLL-CDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred ecCCCCEEEEEEEECCCC-CCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 456778999999999988 69999999999997653 33455666432 2235678999999988774
No 60
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.59 E-value=1.6e-07 Score=64.87 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=40.4
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEcc-----Ccccccce
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYP-----RSQEDRDQ 126 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~-----~~~~s~~~ 126 (130)
.|+|+++|.|.+..+ .|.|.| +|+||+.++ .+||||++++.+ ..++|++.
T Consensus 2 ~G~l~~~l~~~~~~~-------------------~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~ 60 (125)
T cd04031 2 TGRIQIQLWYDKVTS-------------------QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTV 60 (125)
T ss_pred cEEEEEEEEEeCCCC-------------------EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccccccc
Confidence 499999999999885 678888 999999654 789999999976 34455543
No 61
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.58 E-value=1.5e-07 Score=69.16 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=41.7
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccc-eEEEEE-eCCCCCCCC---CCCcEEEEEEcc-----Ccccccce
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCT-DLILTL-EDPNKPEEN---LGDIYLSATLYP-----RSQEDRDQ 126 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~-~l~V~l-~a~nL~~~~---~~dpyVk~~L~~-----~~~~s~~~ 126 (130)
.|+|+++|+|.|...+.-. .....+. .|+|.| +|+|||.++ .+||||++++.+ ..+||++.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi 71 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVV 71 (162)
T ss_pred CceEEEEEEecCccccccc--------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCcc
Confidence 4999999999996642211 0111122 458888 999999765 789999999954 34556554
No 62
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.57 E-value=1.9e-07 Score=64.39 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=35.8
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC----CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN----LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~----~~dpyVk~~L~~~ 119 (130)
|+|+|+|.|.+..+ .|.|.| +|+||+.++ .+||||++++.+.
T Consensus 1 G~i~~~l~y~~~~~-------------------~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~ 47 (123)
T cd08521 1 GEIEFSLSYNYKTG-------------------SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD 47 (123)
T ss_pred CeEEEEEEEeCCCC-------------------EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC
Confidence 89999999998875 678888 999999544 7899999999643
No 63
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.57 E-value=1.6e-07 Score=66.18 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=36.9
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
|+|.|+|.|.|..+ .|.|.| +|+||++++ .+|||||+++++.
T Consensus 1 g~l~~~~~y~~~~~-------------------~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~ 46 (134)
T cd08403 1 GELMFSLCYLPTAG-------------------RLTLTIIKARNLKAMDITGFSDPYVKVSLMCE 46 (134)
T ss_pred CeEEEEEEEcCCCC-------------------EEEEEEEEeeCCCccccCCCCCceEEEEEEeC
Confidence 89999999999886 788888 999999765 7899999999754
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.57 E-value=1.4e-07 Score=65.47 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=40.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
...|.|+|||+|++++||+||++.++|+++..++..+.|+.|.+
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 45799999999999999999999999999999999999998863
No 65
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.57 E-value=1.3e-07 Score=66.30 Aligned_cols=61 Identities=28% Similarity=0.345 Sum_probs=47.6
Q ss_pred cCCCCceEEEEEEeCCCC-----------CCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEE
Q psy16587 3 ETTSGLVVELQVFDYDWG-----------LQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSA 65 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~-----------~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L 65 (130)
+..+...|.|.|||+|.. ..||+||++.++|.++. +...+|+.|++........|+|+|++
T Consensus 56 ~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 56 CHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 344567899999999953 47999999999999875 45679999986443345679998874
No 66
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.57 E-value=1.8e-07 Score=66.13 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=36.2
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEcc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYP 118 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~ 118 (130)
+|+|+++|+|.|..+ .|.|.+ +|+||+.++ .+||||++++.+
T Consensus 1 ~G~l~~sl~y~~~~~-------------------~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~ 46 (136)
T cd08405 1 RGELLLSLCYNPTAN-------------------RITVNIIKARNLKAMDINGTSDPYVKVWLMY 46 (136)
T ss_pred CcEEEEEEEEcCCCC-------------------eEEEEEEEeeCCCccccCCCCCceEEEEEEe
Confidence 499999999999885 677777 999999654 789999999954
No 67
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.56 E-value=2.2e-07 Score=65.57 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=36.9
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCC----CCCCcEEEEEEccC
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEE----NLGDIYLSATLYPR 119 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~----~~~dpyVk~~L~~~ 119 (130)
+|+|.|+|.|.+..+ .|+|.| +|+|||.+ +.+||||+++|++.
T Consensus 2 ~G~l~~~l~y~~~~~-------------------~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNSEKK-------------------ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEECCCC-------------------EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999999885 678888 99999964 46799999999754
No 68
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.55 E-value=2.3e-07 Score=64.40 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=39.9
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC---cccccce
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR---SQEDRDQ 126 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~---~~~s~~~ 126 (130)
.|+|+++|.|.|..+ .|.|.| +|+||++++ .+||||++++++. .++++++
T Consensus 2 ~G~l~~sl~y~~~~~-------------------~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~ 58 (124)
T cd08387 2 RGELHFSLEYDKDMG-------------------ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIH 58 (124)
T ss_pred CCEEEEEEEECCCCC-------------------EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceE
Confidence 499999999999875 678888 999999654 7899999999643 3455544
No 69
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.54 E-value=3e-07 Score=62.74 Aligned_cols=55 Identities=38% Similarity=0.667 Sum_probs=47.0
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIY 62 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~ 62 (130)
..+.|.|+|||+|.+++|++||++.++|+++..+...+.|++|....+ ...|.+.
T Consensus 59 ~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC--ccCceEE
Confidence 457899999999999999999999999999999889999999986433 4556654
No 70
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.53 E-value=2.4e-07 Score=65.49 Aligned_cols=44 Identities=25% Similarity=0.469 Sum_probs=37.0
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRS 120 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~ 120 (130)
.|+|.|+|+|.+..+ .|+|.+ +|+||+.++ .+||||++++.+..
T Consensus 1 ~G~l~~~l~y~~~~~-------------------~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQPTTN-------------------RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeCCCC-------------------eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 499999999998775 687777 999999764 78999999997643
No 71
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.52 E-value=2.2e-07 Score=64.79 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=46.3
Q ss_pred CceEEEEEEeCCCCCC--CCcceEEEEeCccccCCcee-EEEEecCCCCCC--CCCcccEEEEEE
Q psy16587 7 GLVVELQVFDYDWGLQ--DDFMGSASIDLTTLELGRCT-DLILTLEDPNKP--EENLGDIYLSAT 66 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~--dD~iG~~~i~L~~v~~~~~~-~~~~~L~~~~~~--~~~~G~I~l~L~ 66 (130)
.+.|.|+|||+|.+++ |++||++.++++++...+.. ..|++|.+.... ..-.|+|++.|+
T Consensus 59 ~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 59 SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEeC
Confidence 6799999999998865 58999999999998755433 779999765432 233688888763
No 72
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.52 E-value=3.3e-07 Score=63.52 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=39.9
Q ss_pred CcccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEcc---Ccccccce
Q psy16587 57 NLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYP---RSQEDRDQ 126 (130)
Q Consensus 57 ~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~---~~~~s~~~ 126 (130)
++|+|+|+|.|.+... .|.|.+ +|+||+.++ .+||||++++.+ ...+|+++
T Consensus 1 ~~G~l~~~l~y~~~~~-------------------~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~ 58 (125)
T cd08386 1 NLGRIQFSVSYDFQES-------------------TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK 58 (125)
T ss_pred CccEEEEEEEECCCCC-------------------EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeee
Confidence 3699999999999774 678888 999999654 789999999953 33455543
No 73
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.51 E-value=3.8e-07 Score=63.24 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=37.1
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
+|+|+|+|.|.+..+ .|.|.+ +|+||+.++ .+||||++++.+.
T Consensus 2 ~G~l~~~l~y~~~~~-------------------~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~ 48 (124)
T cd08385 2 LGKLQFSLDYDFQSN-------------------QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD 48 (124)
T ss_pred ccEEEEEEEEeCCCC-------------------EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC
Confidence 699999999999885 678888 999999654 7899999999754
No 74
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.51 E-value=2.5e-07 Score=64.59 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=33.1
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC--CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN--LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~--~~dpyVk~~L~~~ 119 (130)
|+|+|+++| ..+ .|.|.+ +|+||++++ .+|||||++|++.
T Consensus 1 G~l~l~~~~--~~~-------------------~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~ 43 (119)
T cd08685 1 GQLKLSIEG--QNR-------------------KLTLHVLEAKGLRSTNSGTCNSYVKISLSPD 43 (119)
T ss_pred CEEEEEEEE--cCC-------------------EEEEEEEEEECCCCCCCCCCCeeEEEEEEeC
Confidence 889999988 333 687777 999999775 6799999999975
No 75
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.50 E-value=3.5e-07 Score=63.75 Aligned_cols=42 Identities=26% Similarity=0.535 Sum_probs=36.7
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
|+|+|+|+|.|..+ .|.|.+ +|+||+..+ .+||||++++.+.
T Consensus 1 G~i~~~l~y~~~~~-------------------~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~ 46 (134)
T cd00276 1 GELLLSLSYLPTAE-------------------RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG 46 (134)
T ss_pred CeEEEEEEeeCCCC-------------------EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC
Confidence 89999999999885 677887 999999754 7899999999775
No 76
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.48 E-value=1.6e-07 Score=66.96 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCcee--EEEEecCC
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCT--DLILTLED 50 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~--~~~~~L~~ 50 (130)
.++++...|.|+|||+|.+ +|||||++.|||+++...... ..|++|+.
T Consensus 52 ~~~~~~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 52 EINRLDLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEcCCCCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 4667788899999999977 999999999999999987766 78999985
No 77
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.45 E-value=5.4e-07 Score=63.12 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=37.1
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
+|+|+|+|.|.+..+ .|+|.| +|+||++++ .+|||||+.+.+.
T Consensus 2 ~G~l~~sl~Y~~~~~-------------------~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~ 48 (124)
T cd08389 2 CGDLDVAFEYDPSAR-------------------KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS 48 (124)
T ss_pred CEEEEEEEEECCCCC-------------------EEEEEEEEecCCCchhcCCCCCcEEEEEEccC
Confidence 699999999999886 787777 999999653 7899999988665
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.42 E-value=8.2e-07 Score=62.32 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=35.2
Q ss_pred cEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 60 DIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 60 ~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
.|+|+|.|.+..+ .|+|.| +|+||+.++ .+||||++++.+.
T Consensus 1 ~i~~~l~y~~~~~-------------------~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~ 45 (133)
T cd08384 1 KILVSLMYNTQRR-------------------GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD 45 (133)
T ss_pred CEEEEEEEcCCCC-------------------EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC
Confidence 4899999999886 678888 999999765 7899999999764
No 79
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.42 E-value=8.7e-07 Score=61.12 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=35.9
Q ss_pred ccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC----CCCcEEEEEEccC
Q psy16587 59 GDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN----LGDIYLSATLYPR 119 (130)
Q Consensus 59 G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~----~~dpyVk~~L~~~ 119 (130)
|+|+++|.|.+..+ .|+|.| +|+||+.++ .+||||++++.+.
T Consensus 1 G~l~~~l~y~~~~~-------------------~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~ 47 (123)
T cd08390 1 GRLWFSVQYDLEEE-------------------QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD 47 (123)
T ss_pred CEEEEEEEECCCCC-------------------EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC
Confidence 89999999999885 678888 999999653 6799999999653
No 80
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.40 E-value=5e-07 Score=62.27 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=39.1
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
...|.|.|||+|.++++++||++.++|+++..+...+.|++|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 568999999999999999999999999999998888999876
No 81
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.40 E-value=7e-07 Score=61.62 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=40.8
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
...|.|.|||+|.+++|++||++.++|+++........|++|++
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 35899999999999899999999999999999999999999874
No 82
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.40 E-value=1.7e-06 Score=62.99 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=54.7
Q ss_pred CCceEEEEEEeCCC-C---CCCCcceEEEEeCccccCCceeEEEEecCCCCCCC--------CCcccEEEEEEEecCc
Q psy16587 6 SGLVVELQVFDYDW-G---LQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPE--------ENLGDIYLSATLYPRS 71 (130)
Q Consensus 6 ~~~~L~~~V~D~D~-~---~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~--------~~~G~I~l~L~~~p~~ 71 (130)
+...|.|.||+-|. . .++++||.+.||+.++..+...+.|++|.++.+.. ...|.|+++++|.+..
T Consensus 65 ~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 65 PVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 34679999987653 2 26899999999999999999999999998876543 5668999999999854
No 83
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.37 E-value=3.3e-07 Score=64.71 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=37.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCc-eeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR-CTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~-~~~~~~~L 48 (130)
...+|+|.|||+|+++++|+||++.|+|++++... ....|+.|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 45799999999999999999999999999998875 46678765
No 84
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.37 E-value=7.9e-07 Score=60.73 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=38.8
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCC---ceeEEEEecCCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELG---RCTDLILTLEDP 51 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~---~~~~~~~~L~~~ 51 (130)
...|.|.|||+|.+++|++||++.++|+++..+ .....|++|.+|
T Consensus 64 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~~ 111 (111)
T cd04011 64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111 (111)
T ss_pred cCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeCc
Confidence 367999999999998999999999999999655 446789999874
No 85
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.37 E-value=8.5e-07 Score=63.31 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPN 52 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~ 52 (130)
....|+|+|||+|++++++|||++.++|+++........|++|+...
T Consensus 76 ~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 76 EKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred cccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 35689999999999999999999999999999888889999998754
No 86
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.35 E-value=8.4e-07 Score=62.78 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=37.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCc---eeEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR---CTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~---~~~~~~~L~ 49 (130)
...|+|.|||+|+++++|+||++.|||++++... ....|++|.
T Consensus 83 ~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 83 SRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 5799999999999999999999999999999864 446788773
No 87
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.33 E-value=1.9e-06 Score=59.63 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=36.2
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEcc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYP 118 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~ 118 (130)
+|+|+++|.|.|..+ .|.|.| +|+||+.++ .+||||++.+.+
T Consensus 1 ~G~~~~~l~y~~~~~-------------------~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~ 46 (123)
T cd04035 1 LGTLEFTLLYDPANS-------------------ALHCTIIRAKGLKAMDANGLSDPYVKLNLLP 46 (123)
T ss_pred CcEEEEEEEEeCCCC-------------------EEEEEEEEeeCCCCCCCCCCCCceEEEEEec
Confidence 599999999999885 687877 999999654 789999999854
No 88
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.32 E-value=8.3e-07 Score=60.68 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=38.9
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccC---CceeEEEEecCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLEL---GRCTDLILTLED 50 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~---~~~~~~~~~L~~ 50 (130)
.+.|.|+|||+|++++||+||++.++|+++.. +...+.|++|-+
T Consensus 63 ~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 63 DEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 46899999999999999999999999999987 455788998865
No 89
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.31 E-value=2e-06 Score=60.70 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=35.9
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEcc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYP 118 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~ 118 (130)
.|+|.+++.|.+..+ .|.|.+ +|+||+.++ .+||||++++.+
T Consensus 2 ~G~l~~~l~y~~~~~-------------------~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~ 47 (133)
T cd04009 2 YGVLTVKAYYRASEQ-------------------SLRVEILNARNLLPLDSNGSSDPFVKVELLP 47 (133)
T ss_pred ceEEEEEEEEcCCCC-------------------EEEEEEEEeeCCCCcCCCCCCCCEEEEEEEC
Confidence 599999999999764 677777 999999754 789999999974
No 90
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.30 E-value=2.9e-06 Score=57.84 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=44.4
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
...|.|.|||.+..++++++|. ++|..+..+...+.|++|.+........|+|+|.++|
T Consensus 59 ~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 59 FFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 3567888888877766666665 5566667788889999998754445678999999986
No 91
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.30 E-value=1.2e-06 Score=60.49 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=35.7
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
...|.|+|||+|.+++||+||++.++|++.. ......|++|+
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 5689999999999999999999999999943 34456899885
No 92
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.30 E-value=1.2e-06 Score=59.52 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=35.4
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEE
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLI 45 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~ 45 (130)
+..+.|.|+|||+|.+++||+||++.++|+++..++..+..
T Consensus 67 ~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 67 DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCCCceEE
Confidence 34789999999999999999999999999999876665543
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.29 E-value=1e-06 Score=60.99 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCCceEEEEEEeCCC----CCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 5 TSGLVVELQVFDYDW----GLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~----~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
+..+.|.|+|||+|. +++||+||++.++++++..+.....|++|.+
T Consensus 65 ~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 65 EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred EeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 345689999999997 7899999999999999998888888998854
No 94
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.28 E-value=2.5e-06 Score=59.78 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=45.7
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCce-----eEEEEecCCCCC-CCCCcccEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRC-----TDLILTLEDPNK-PEENLGDIYLSA 65 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~-----~~~~~~L~~~~~-~~~~~G~I~l~L 65 (130)
..+.|.|+|||+|.+++|++||++.++|+++..+.. ...|++|..+.. .....|+|.+.+
T Consensus 59 ~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 59 PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 457899999999999999999999999999875433 235788865431 124568888765
No 95
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.24 E-value=1.8e-06 Score=63.46 Aligned_cols=44 Identities=23% Similarity=0.179 Sum_probs=40.4
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
...|.|.|||+|.+++||+||++.++|+++...+..+.|+.|.+
T Consensus 95 ~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 95 QACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 35799999999999999999999999999999988999998865
No 96
>KOG2059|consensus
Probab=98.23 E-value=2.7e-06 Score=74.52 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhccccccc
Q psy16587 4 TTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTS 83 (130)
Q Consensus 4 ~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~ 83 (130)
....+.|-|-|||.| +++||.||.+-|-=.++..-...+.|..|.......|-.|+|||+|.+.+..+.
T Consensus 62 P~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------- 130 (800)
T KOG2059|consen 62 PRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------- 130 (800)
T ss_pred CcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCC----------
Confidence 344567999999999 889999999999888888777889999998766656889999999999996641
Q ss_pred cccccccceE-EEEEeCCC-CC-CCCCCCcEEEEEEccCcc----cccce
Q psy16587 84 ESYSQKCTDL-ILTLEDPN-KP-EENLGDIYLSATLYPRSQ----EDRDQ 126 (130)
Q Consensus 84 ~~~s~~~~~l-~V~l~a~n-L~-~~~~~dpyVk~~L~~~~~----~s~~~ 126 (130)
+++ -=+|+++. +| ..+.+|||+.+++....+ ++++.
T Consensus 131 -------~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~ 173 (800)
T KOG2059|consen 131 -------SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVK 173 (800)
T ss_pred -------CcchhhhhhhcccCceeCCCCCcceEEeecccchhhcccccee
Confidence 122 22334443 34 234689999999987666 55543
No 97
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.23 E-value=1.2e-06 Score=60.81 Aligned_cols=45 Identities=27% Similarity=0.230 Sum_probs=41.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP 51 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~ 51 (130)
.+.|.|+|||+|.+.+|++||++.++|+++..++..+.|+.|...
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 578999999999999999999999999999988888999999874
No 98
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.22 E-value=2.6e-06 Score=81.99 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=55.9
Q ss_pred CcCCCC--ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCccc---EEEEEEEecC
Q psy16587 2 PETTSG--LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGD---IYLSATLYPR 70 (130)
Q Consensus 2 ~~~~~~--~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~---I~l~L~~~p~ 70 (130)
.+++|+ .+|+|+|||+|.| .+|.||.+.|+|.++..++....|++|.+.. ...|. |.+.+.|.|+
T Consensus 2033 ~~~~p~~~~~l~iev~d~d~f-~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~---~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2033 AFDSPPKGQKLHISCKSKNTF-GKSSLGKVTIQIDRVVMEGTYSGEYSLNPES---NKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred eecCCCCCCceEEEEEecCcc-CCCCCceEEEEHHHHhcCceeeeeeecCccc---ccCCCcceEEEEEEecCC
Confidence 367766 7899999999999 6669999999999999999999999999632 34588 9999999874
No 99
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.21 E-value=2.7e-06 Score=58.93 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=38.9
Q ss_pred CceEEEEEEeCCCC--CCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 7 GLVVELQVFDYDWG--LQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~--~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
...|+|.|||+|.+ ++|++||++.|+|+++..++....|++|+
T Consensus 83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 46899999999985 69999999999999999988889999874
No 100
>KOG1013|consensus
Probab=98.15 E-value=2e-06 Score=69.90 Aligned_cols=94 Identities=22% Similarity=0.316 Sum_probs=73.7
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeE--EEEecCCC----CCC-CCCcccEEEEEEEecCcchhhhcccc
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTD--LILTLEDP----NKP-EENLGDIYLSATLYPRSQEDRDQEAS 80 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~--~~~~L~~~----~~~-~~~~G~I~l~L~~~p~~~~~~~~~~~ 80 (130)
+.+++.|.|.|.+.+++++|+..++|..+.+.+.-. .|+.-+-+ ... .|+.|.|.++|.|..+..
T Consensus 162 K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~-------- 233 (362)
T KOG1013|consen 162 KVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP-------- 233 (362)
T ss_pred hhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCC--------
Confidence 468899999999999999999999999999876532 22222222 111 378999999999998774
Q ss_pred ccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCc
Q psy16587 81 GTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRS 120 (130)
Q Consensus 81 ~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~ 120 (130)
.+.|.+ .+..|.+|+ .+||||+.++.+..
T Consensus 234 -----------~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv 266 (362)
T KOG1013|consen 234 -----------GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDV 266 (362)
T ss_pred -----------ceEEEEEEeeeeeccccCCCCCccceeecCCCc
Confidence 777777 999999775 89999999997654
No 101
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.13 E-value=2.2e-06 Score=59.84 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=37.4
Q ss_pred CCceEEEEEEeCCCCC-CCCcceEEEEeCccccCCceeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGL-QDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~-~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
....|.|.|||+|.++ ++|+||++.|||.++..++..+.|+.|
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3467999999999886 579999999999999988878889875
No 102
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.13 E-value=2.9e-06 Score=60.92 Aligned_cols=35 Identities=37% Similarity=0.406 Sum_probs=31.4
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCce
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRC 41 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~ 41 (130)
..+|.|+|||+|++++||+||++.++|+.+..+..
T Consensus 92 ~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 92 PPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred CcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 56899999999999999999999999998886543
No 103
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.12 E-value=4.9e-06 Score=58.22 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=41.3
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK 53 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~ 53 (130)
..+.|.|.|||+|.+++|++||++.++|+++... ..+.|++|.+++.
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~ 124 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEE 124 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCccc
Confidence 3578999999999988999999999999999854 7889999988655
No 104
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.12 E-value=6.5e-06 Score=60.11 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCce-------eEEEEecCCCCC
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRC-------TDLILTLEDPNK 53 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~-------~~~~~~L~~~~~ 53 (130)
+..+.|.|+|||+|.+++||+||.+.++|+++..++. -..|+.|-++..
T Consensus 73 ~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~ 128 (151)
T cd04018 73 PLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPR 128 (151)
T ss_pred CcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcc
Confidence 4567999999999999999999999999999887553 247888766433
No 105
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.11 E-value=5.7e-06 Score=57.67 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=39.7
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
++..+.+.|.|+|||+|.+++|++||++.++|+++..+ ..+.|+.|-+
T Consensus 56 ~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 56 PVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred EecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 45566789999999999999999999999999999876 4455665554
No 106
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.10 E-value=3.4e-06 Score=57.92 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCc
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~ 40 (130)
....|.|+|||+|++++||+||++.++|+++..+.
T Consensus 65 ~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 65 KNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 34589999999999999999999999999987644
No 107
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.09 E-value=2.7e-06 Score=58.24 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
....|.|+|||+|++++||+||++.++|+++.. ..-|+++.
T Consensus 67 ~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 67 AGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 457899999999999999999999999999972 33455543
No 108
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.08 E-value=2e-05 Score=54.39 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=46.0
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
..|.|.|||++.+ +|++||.+.++|+++..+ ..|++|.++.+.....|.|.+.+++
T Consensus 72 ~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 72 AFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 4699999999999 999999999999999643 3567887765544667999998875
No 109
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.00 E-value=6e-06 Score=59.81 Aligned_cols=39 Identities=36% Similarity=0.363 Sum_probs=34.6
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCc
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~ 40 (130)
++.++...|.|+|||+|.+++||+||++.++|.++....
T Consensus 55 ~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 55 SVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred EecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 466778899999999999999999999999999987543
No 110
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=97.95 E-value=3.6e-05 Score=55.23 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=43.7
Q ss_pred CCceEEEEEEeCCCCCC---CCcceEEEEeCccccCC---ceeEEEEecCCCCCCCCCcccEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQ---DDFMGSASIDLTTLELG---RCTDLILTLEDPNKPEENLGDIYLSA 65 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~---dD~iG~~~i~L~~v~~~---~~~~~~~~L~~~~~~~~~~G~I~l~L 65 (130)
.++.|.|+|||++..++ +|+||++.+||+++..+ .....|++|+.-.....-.|+|.+.+
T Consensus 71 ~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 71 PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 45789999999986544 79999999999999754 23567888875333234457777654
No 111
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=97.93 E-value=2.6e-05 Score=54.50 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=33.9
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEcc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYP 118 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~ 118 (130)
.|+|.|++.|.+ + .|.|.| +|+||+..+ .+||||++.+.+
T Consensus 1 ~g~~~~~~~~~~--~-------------------~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~ 44 (131)
T cd04026 1 RGRIYLKISVKD--N-------------------KLTVEVREAKNLIPMDPNGLSDPYVKLKLIP 44 (131)
T ss_pred CcEEEEEEEECC--C-------------------EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEc
Confidence 499999999998 3 577888 999999643 789999999975
No 112
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.92 E-value=1.2e-05 Score=56.25 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=45.2
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCc
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRS 71 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~ 71 (130)
....|.|+|||+|.+++||+||++.++|.+... +....+.-+.. . ...+|.++.+-.+.|..
T Consensus 61 ~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 122 (124)
T cd04037 61 GNSILKISVMDYDLLGSDDLIGETVIDLEDRFF-SKHRATCGLPP-T--YEESGPNQWRDSLKPSG 122 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEeeccccc-chHHHhccCCC-c--ccccCceecCcccCccc
Confidence 356899999999999999999999999998875 22222222222 1 23679999888877753
No 113
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.89 E-value=2.6e-05 Score=52.67 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=38.5
Q ss_pred CcCCC-CceEEEEEEeCCCCCCCCcceEEEEeCccccCCc--eeEEEEecCCC
Q psy16587 2 PETTS-GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR--CTDLILTLEDP 51 (130)
Q Consensus 2 ~~~~~-~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~--~~~~~~~L~~~ 51 (130)
++.++ .+.|.|+|||+|. +++||++.++|+++.... ..+.|++|++.
T Consensus 54 ~v~~~~~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 54 LVRNPENQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EeCCCCCCEEEEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 34553 5689999999987 899999999999997653 67899999863
No 114
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=97.87 E-value=3.1e-05 Score=53.50 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.6
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
+..|.|+|||+|.+ ++++||++.++|+++..++..+.|+.|
T Consensus 83 ~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 83 RKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 46899999999999 999999999999999988888877643
No 115
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=97.83 E-value=2.8e-05 Score=55.22 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLEL 38 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~ 38 (130)
..+.|.|+|||+|.+++||+||++.++|.....
T Consensus 87 ~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 87 PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 478999999999999999999999999997664
No 116
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=97.81 E-value=7.8e-06 Score=57.75 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=37.0
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP 51 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~ 51 (130)
....|.|.|||+|.+++||+||++.++++. .+...+.|..|.+.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 456799999999999999999999999998 45566788887653
No 117
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=97.80 E-value=3.7e-05 Score=55.32 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=31.9
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
..+|.|.|||+|++++||+||++.+++.. .+...+.|..+
T Consensus 84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 84 ASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred ccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 56799999999999999999999999986 33334455444
No 118
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=97.80 E-value=3.6e-05 Score=53.90 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=33.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
...|.|.|||+|.+++||+||++.++|+.. +...+.|+++-
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 468999999999999999999999999863 34456677653
No 119
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.74 E-value=3.5e-05 Score=52.04 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=28.8
Q ss_pred EEEEE-eCCCCCCC---CCCCcEEEEEEccCcccccce
Q psy16587 93 LILTL-EDPNKPEE---NLGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 93 l~V~l-~a~nL~~~---~~~dpyVk~~L~~~~~~s~~~ 126 (130)
|+|.+ +|+|||.. +.+||||+++++...++|+++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~ 39 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVK 39 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccc
Confidence 47888 99999964 388999999999988888764
No 120
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=97.74 E-value=3.9e-05 Score=54.10 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=30.2
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLEL 38 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~ 38 (130)
....|.|.|||+|++++|++||++.++|+++..
T Consensus 86 ~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 86 EGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 356899999999999899999999999999884
No 121
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=97.74 E-value=5.9e-05 Score=53.15 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=32.2
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
...|.|+|||+|.+++||+||++.+++.+. +...+.|.++
T Consensus 82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 82 ETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred CCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence 468999999999999999999999999986 3334455444
No 122
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=97.70 E-value=0.00011 Score=51.81 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.9
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
..|.|+|||+|++++||+||++.|++... +...+.|.++
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~ 121 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDM 121 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHH
Confidence 47999999999999999999999999863 3333444444
No 123
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.70 E-value=4.2e-05 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=29.0
Q ss_pred EEEEE-eCCCCCCCC---CCCcEEEEEEccCccccccee
Q psy16587 93 LILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 93 l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~~~~ 127 (130)
++|.+ +|+||+.++ .+||||+++++...++|+++.
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~ 40 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS 40 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc
Confidence 46778 999999764 789999999988888887754
No 124
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=97.69 E-value=7.1e-05 Score=51.20 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=29.2
Q ss_pred eEEEEE-eCCCCCCCC---CCCcEEEEEEccCcccccce
Q psy16587 92 DLILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~~~ 126 (130)
.|.|.| +|+|||..+ .+||||+++++...+++++.
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~ 40 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTD 40 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccc
Confidence 467788 999999654 78999999999988887753
No 125
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=97.66 E-value=4.3e-05 Score=52.11 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=28.3
Q ss_pred EEEEE-eCCCCCCCC----CCCcEEEEEEccCcccccce
Q psy16587 93 LILTL-EDPNKPEEN----LGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 93 l~V~l-~a~nL~~~~----~~dpyVk~~L~~~~~~s~~~ 126 (130)
|.|.| +|+|||.++ .+||||+++++...+||+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~ 39 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV 39 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEeccee
Confidence 35777 999999765 57999999999988888775
No 126
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=97.66 E-value=6.8e-05 Score=51.05 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=29.5
Q ss_pred eEEEEE-eCCCCCCCCCCCcEEEEEEccCccccccee
Q psy16587 92 DLILTL-EDPNKPEENLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.|.|.+ +|+||+ .+.+||||+++++...++|+++.
T Consensus 5 ~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~ 40 (111)
T cd04011 5 QVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKK 40 (111)
T ss_pred EEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEe
Confidence 356777 999999 56899999999999988888754
No 127
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=97.65 E-value=5.4e-05 Score=51.95 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=28.9
Q ss_pred EEEEE-eCCCCCCCC-------CCCcEEEEEEccCccccccee
Q psy16587 93 LILTL-EDPNKPEEN-------LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 93 l~V~l-~a~nL~~~~-------~~dpyVk~~L~~~~~~s~~~~ 127 (130)
|.|.+ +|+|||+.+ .+||||+|+++.+.+||+++.
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~ 45 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR 45 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec
Confidence 47888 999999653 379999999998888888754
No 128
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=97.65 E-value=0.00013 Score=51.31 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.6
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
..|.|+|||+|++++||+||++.|++... ++..+.|..+
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 46999999999999999999999998733 3334555554
No 129
>KOG0696|consensus
Probab=97.63 E-value=1.3e-05 Score=67.83 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=39.5
Q ss_pred CCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 4 TTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 4 ~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
+|..+-|.++||||||.|++||||+.+.-++++.. .+++-|+.|-.
T Consensus 243 ~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLs 288 (683)
T KOG0696|consen 243 SDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLS 288 (683)
T ss_pred ccccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhh
Confidence 56778899999999999999999999999999985 45677877754
No 130
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=97.61 E-value=8.5e-05 Score=52.01 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=27.1
Q ss_pred eEEEEE-eCCCCCCCCCCCcEEEEEEccCc-ccccc
Q psy16587 92 DLILTL-EDPNKPEENLGDIYLSATLYPRS-QEDRD 125 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~~~dpyVk~~L~~~~-~~s~~ 125 (130)
.|.|.+ +|+|||..+.+||||++.|+... .++++
T Consensus 5 ~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v 40 (126)
T cd08400 5 SLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV 40 (126)
T ss_pred EEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec
Confidence 576777 99999998899999999997633 45554
No 131
>KOG1028|consensus
Probab=97.60 E-value=0.00015 Score=60.93 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=41.1
Q ss_pred CCCcccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCc
Q psy16587 55 EENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRS 120 (130)
Q Consensus 55 ~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~ 120 (130)
....|.|.++|.|-.... .|+|.+ +|+|||+++ .+|||||++|.++.
T Consensus 150 ~~~~G~l~fsl~Yd~~~~-------------------~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk 200 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELN-------------------LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK 200 (421)
T ss_pred ceeeeeEEEEEEecccCC-------------------EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC
Confidence 356899999999999874 678888 999999876 57999999999988
No 132
>KOG0696|consensus
Probab=97.49 E-value=0.00017 Score=61.20 Aligned_cols=46 Identities=30% Similarity=0.457 Sum_probs=37.1
Q ss_pred CCCcccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCcc
Q psy16587 55 EENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRSQ 121 (130)
Q Consensus 55 ~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~ 121 (130)
.|..|.|+|..... .. .|+|.| +|+||.+|+ +||||||++|.++.+
T Consensus 165 tE~RGrl~l~~~~~--~~-------------------~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK--RD-------------------VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPK 214 (683)
T ss_pred hhhcceEEEEEEec--Cc-------------------eEEEEehhhccccccCCCCCCCcceeEEeccCCc
Confidence 46789999888772 22 469999 999999876 999999999988653
No 133
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=97.43 E-value=0.00036 Score=49.35 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=29.6
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecC
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~ 49 (130)
..|.|.|||+|.+++||+||++.|....... ...+.|..+-
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~ 122 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRML 122 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHH
Confidence 4799999999999999999999876544332 1234455543
No 134
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=97.42 E-value=4.8e-05 Score=52.84 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=37.3
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP 51 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~ 51 (130)
...|.|+|||+|.++++++||++.++|++ .+...+.|+.|...
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 57899999999998899999999999999 56667888888653
No 135
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=97.42 E-value=0.00042 Score=49.52 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
...+|.|.|||+|+++++|+||++.+++..... ...+.|..+
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~ 123 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM 123 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence 456899999999999999999999999985542 223455544
No 136
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=97.41 E-value=0.0004 Score=49.62 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=31.7
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
...+|.|.|||+|+++++|+||++.|+... .++..+.|..+
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~m 121 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQM 121 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHH
Confidence 457899999999999999999999998764 33444455443
No 137
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=97.32 E-value=0.00056 Score=49.22 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=33.3
Q ss_pred cCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 3 ~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
..+....|.+.|||+|+.+++|+||.+.++.+.... ...+.|.+.
T Consensus 77 ~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 77 QQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred chhheeEEEEEEEeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 344556899999999999999999999999976432 223455443
No 138
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=97.29 E-value=0.00033 Score=49.92 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=29.7
Q ss_pred eEEEEE-eCCCCCCCC---CCCcEEEEEEccCccccccee
Q psy16587 92 DLILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.|.|++ +|+||+.++ .+||||+++++...++|+++.
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~ 55 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS 55 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC
Confidence 357777 999999664 889999999998888888753
No 139
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.29 E-value=0.00025 Score=65.30 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=55.0
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCc
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRS 71 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~ 71 (130)
+....|.+.|+|||...++|.||.+.+||+.++.++++....+|++.. .....|.++....|.+..
T Consensus 1099 r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FIVLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred cccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc-eEecccEeecceecchhh
Confidence 556679999999999999999999999999999999999999998854 234557777666666655
No 140
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=97.26 E-value=0.00041 Score=47.28 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=29.0
Q ss_pred eEEEEE-eCCCCCCCC---CCCcEEEEEEccCccccccee
Q psy16587 92 DLILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.|.|.+ +|+||+.++ .+||||+++++...++|+++.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~ 41 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY 41 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec
Confidence 456777 999999755 679999999988777877653
No 141
>PLN02952 phosphoinositide phospholipase C
Probab=97.26 E-value=0.00089 Score=58.59 Aligned_cols=55 Identities=25% Similarity=0.442 Sum_probs=44.3
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
.-|+|+|||+|.++.|||+|.+.+||+.+..+-. |++|.+..+ +.+|...|-+.|
T Consensus 542 Allrf~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G--~~l~~a~Llv~f 596 (599)
T PLN02952 542 ALLRIEVREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHDKKG--EKLKNVRLLMRF 596 (599)
T ss_pred cEEEEEEEecCCCCCCCeEEEEEcchhHhcCCce---eEeCcCCCC--CCCCCEEEEEEE
Confidence 3589999999999999999999999999998763 788876543 566666665554
No 142
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=97.22 E-value=0.00048 Score=46.71 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=27.6
Q ss_pred EEEEE-eCCCCCCCCCCCcEEEEEEccCc-cccccee
Q psy16587 93 LILTL-EDPNKPEENLGDIYLSATLYPRS-QEDRDQN 127 (130)
Q Consensus 93 l~V~l-~a~nL~~~~~~dpyVk~~L~~~~-~~s~~~~ 127 (130)
|.|.+ +|+|||.++.+||||+++++... ++|+++.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~ 38 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVE 38 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEE
Confidence 55677 99999988889999999998643 5666653
No 143
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.21 E-value=0.00047 Score=48.44 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=29.0
Q ss_pred eEEEEE-eCCCCCCC--CCCCcEEEEEEccCcccccce
Q psy16587 92 DLILTL-EDPNKPEE--NLGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~--~~~dpyVk~~L~~~~~~s~~~ 126 (130)
.|.|++ +|++|+.. +.+||||+++++...+++++.
T Consensus 3 ~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~ 40 (121)
T cd04016 3 RLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTA 40 (121)
T ss_pred EEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEc
Confidence 466777 99999865 478999999999988888764
No 144
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=97.12 E-value=0.00078 Score=42.46 Aligned_cols=43 Identities=33% Similarity=0.474 Sum_probs=36.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCcccc-CCceeEEEEec
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLE-LGRCTDLILTL 48 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~-~~~~~~~~~~L 48 (130)
....|.|+|||.+.+..+.+||.+.+++..+. .......|++|
T Consensus 59 ~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 46789999999999888999999999999998 66666667654
No 145
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.08 E-value=0.00075 Score=47.39 Aligned_cols=20 Identities=5% Similarity=0.033 Sum_probs=17.7
Q ss_pred eCCCCCCC--CCCCcEEEEEEc
Q psy16587 98 EDPNKPEE--NLGDIYLSATLY 117 (130)
Q Consensus 98 ~a~nL~~~--~~~dpyVk~~L~ 117 (130)
+|+||+.+ +.+|||||++|.
T Consensus 8 ~A~~L~~~d~g~~DPYVkV~l~ 29 (120)
T cd08395 8 AANDLKWQTTGMFRPFVEVNLI 29 (120)
T ss_pred ECcCCCcccCCCCCCEEEEEEe
Confidence 99999976 488999999984
No 146
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=97.07 E-value=0.0011 Score=46.99 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=29.1
Q ss_pred eEEEEE-eCCCCCC--CCCCCcEEEEEEccCccccccee
Q psy16587 92 DLILTL-EDPNKPE--ENLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 92 ~l~V~l-~a~nL~~--~~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.|.|+| +|+||+. .+.+||||+++++...+||++..
T Consensus 29 ~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~ 67 (127)
T cd04032 29 TLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIW 67 (127)
T ss_pred EEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceec
Confidence 467778 9999984 23789999999998888887753
No 147
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.05 E-value=0.0035 Score=58.11 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=67.3
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEE-EEecCCCCCCCCCcccEEEEEEEecCcchhhhcccc
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDL-ILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEAS 80 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~-~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~ 80 (130)
++...+.+|.+.|||++.+++|+.+|++.++|..+..+..... ...+... ....|++...++|.|...+-+.. .
T Consensus 493 ~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~k~~~--~ 567 (1227)
T COG5038 493 LLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIEDKKEL--K 567 (1227)
T ss_pred EecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCCcccc--c
Confidence 4667788999999999999999999999999999886655432 2233221 24679999999999987642211 0
Q ss_pred ccccccccccceE-EEEE-eCCCCCC
Q psy16587 81 GTSESYSQKCTDL-ILTL-EDPNKPE 104 (130)
Q Consensus 81 ~~~~~~s~~~~~l-~V~l-~a~nL~~ 104 (130)
...+..-..-+++ -+.| ++++|..
T Consensus 568 ~s~e~~ed~n~GI~k~tl~~~~~l~~ 593 (1227)
T COG5038 568 GSVEPLEDSNTGILKVTLREVKALDE 593 (1227)
T ss_pred cccCCcccCCcceeEEEeeccccccC
Confidence 0000111122477 8888 9988873
No 148
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.96 E-value=0.0011 Score=45.09 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.2
Q ss_pred EEEEE-eCCCCCCC----CCCCcEEEEEEccC---cccccce
Q psy16587 93 LILTL-EDPNKPEE----NLGDIYLSATLYPR---SQEDRDQ 126 (130)
Q Consensus 93 l~V~l-~a~nL~~~----~~~dpyVk~~L~~~---~~~s~~~ 126 (130)
|.|.| +|+||+.+ +.+||||++++... .++|+++
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~ 44 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRII 44 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeE
Confidence 57788 99999964 46899999999644 3455553
No 149
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=96.93 E-value=0.0029 Score=44.58 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.6
Q ss_pred CCceEEEEEEeC-------CCCCCCCcceEEEEeCcc
Q psy16587 6 SGLVVELQVFDY-------DWGLQDDFMGSASIDLTT 35 (130)
Q Consensus 6 ~~~~L~~~V~D~-------D~~~~dD~iG~~~i~L~~ 35 (130)
..++|.|.|||+ |.+++||+||.+.|.|..
T Consensus 56 ~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 56 GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 477999999999 678899999888887753
No 150
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=96.90 E-value=0.0016 Score=43.92 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=21.7
Q ss_pred EEEEeCCCCCCCC---CCCcEEEEEEccCc
Q psy16587 94 ILTLEDPNKPEEN---LGDIYLSATLYPRS 120 (130)
Q Consensus 94 ~V~l~a~nL~~~~---~~dpyVk~~L~~~~ 120 (130)
.+.++|+||+.++ .+||||++++....
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~ 33 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSED 33 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCC
Confidence 4555999999775 78999999987653
No 151
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=96.89 E-value=0.0014 Score=45.66 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=28.8
Q ss_pred EEEEE-eCCCCCCCC---CCCcEEEEEEccCcccccce
Q psy16587 93 LILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 93 l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~~~ 126 (130)
+.|.| +|+||+..+ .+||||+++++....+|++.
T Consensus 5 ~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~ 42 (126)
T cd04046 5 TQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQ 42 (126)
T ss_pred EEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCcc
Confidence 47888 999999754 78999999999888888775
No 152
>PLN02223 phosphoinositide phospholipase C
Probab=96.89 E-value=0.0028 Score=54.83 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=37.5
Q ss_pred CcCCCCc-eEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCC
Q psy16587 2 PETTSGL-VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPN 52 (130)
Q Consensus 2 ~~~~~~~-~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~ 52 (130)
+|..|.- .|+|+|||+|..++|||+|.+.+|++.+..+- -.++|-+..
T Consensus 473 ~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 473 PLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred EEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 3444444 58999999999999999999999999999864 344676543
No 153
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=96.89 E-value=0.00058 Score=48.52 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=32.5
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEec
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
..|.|.|||+|.++++++||++.|+......+...+.|..+
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 68999999999999999999999997665545444555443
No 154
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=96.88 E-value=0.0013 Score=47.96 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=27.0
Q ss_pred eEEEEE-eCCCCCCCC---------------------------------CCCcEEEEEEccCc-ccccce
Q psy16587 92 DLILTL-EDPNKPEEN---------------------------------LGDIYLSATLYPRS-QEDRDQ 126 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~---------------------------------~~dpyVk~~L~~~~-~~s~~~ 126 (130)
.|.|.| +|++||+|+ .+||||+++++... .+|+++
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~ 77 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVI 77 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEe
Confidence 347888 999999875 26999999998654 467664
No 155
>PLN02270 phospholipase D alpha
Probab=96.84 E-value=0.0031 Score=56.80 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=58.9
Q ss_pred CcCCCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCC-CcccEEEEEEEecCcch
Q psy16587 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEE-NLGDIYLSATLYPRSQE 73 (130)
Q Consensus 2 ~~~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~-~~G~I~l~L~~~p~~~~ 73 (130)
|+-.....+.|.|-|-|.+ ...+||.+.||..++-.+..++-|+++-+..+++- ..-.|+++|.|.|...+
T Consensus 82 ~~ah~~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 82 YCAHMASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred eeccCcceEEEEEecCCcc-CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 4556678899999999998 56699999999999999999999999987665443 33589999999996643
No 156
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=96.78 E-value=0.0015 Score=44.42 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=25.0
Q ss_pred eCCCCCCCC---------CCCcEEEEEEccCccccccee
Q psy16587 98 EDPNKPEEN---------LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 98 ~a~nL~~~~---------~~dpyVk~~L~~~~~~s~~~~ 127 (130)
+|+||+.++ .+||||+++++...++|+++.
T Consensus 9 ~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~ 47 (121)
T cd08391 9 EAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK 47 (121)
T ss_pred EccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC
Confidence 999999653 589999999998888887753
No 157
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.74 E-value=0.0019 Score=41.11 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=32.8
Q ss_pred CcCCC-CceEEEEEEeCCCCCCCCcceEEEEeCccccCCc
Q psy16587 2 PETTS-GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40 (130)
Q Consensus 2 ~~~~~-~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~ 40 (130)
++..+ .+.|.|.|||.+....+.++|.+.++|.++..+.
T Consensus 57 ~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 57 EVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred EecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 34445 7899999999998878999999999999887654
No 158
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=96.64 E-value=0.0034 Score=43.12 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=22.1
Q ss_pred EEEEeCCCCCCCC---CCCcEEEEEEccCc
Q psy16587 94 ILTLEDPNKPEEN---LGDIYLSATLYPRS 120 (130)
Q Consensus 94 ~V~l~a~nL~~~~---~~dpyVk~~L~~~~ 120 (130)
.+.|+|++|+..+ .+||||++++....
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~ 33 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGG 33 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCC
Confidence 3455999999665 78999999998875
No 159
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=96.51 E-value=0.0041 Score=42.61 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=22.2
Q ss_pred eCCCCCCCC---CCCcEEEEEEcc---Ccccccce
Q psy16587 98 EDPNKPEEN---LGDIYLSATLYP---RSQEDRDQ 126 (130)
Q Consensus 98 ~a~nL~~~~---~~dpyVk~~L~~---~~~~s~~~ 126 (130)
+|+|||..+ .+||||+++++. ..++|++.
T Consensus 8 ~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv 42 (119)
T cd04036 8 RATNITKGDLLSTPDCYVELWLPTASDEKKRTKTI 42 (119)
T ss_pred EeeCCCccCCCCCCCcEEEEEEcCCCCccCcccee
Confidence 999999654 789999999964 34566543
No 160
>PLN02228 Phosphoinositide phospholipase C
Probab=96.50 E-value=0.0089 Score=52.15 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCc
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRS 71 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~ 71 (130)
.-|+|.|+|+|.++.|||+|.+.||++.+..+-. .++|-+..+..-....|++.+.+.|..
T Consensus 504 A~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 504 ALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred eEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 4689999999999899999999999999986532 446766554333346688888877754
No 161
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=96.34 E-value=0.0056 Score=44.72 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.1
Q ss_pred eEEEEE-eCCCCCCCC---CCCcEEEEEEccC
Q psy16587 92 DLILTL-EDPNKPEEN---LGDIYLSATLYPR 119 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~ 119 (130)
.|.|.| +|+||+.++ .+||||++++++.
T Consensus 29 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~ 60 (153)
T cd08676 29 VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPA 60 (153)
T ss_pred EEEEEEEeccCCcccCCCCCCCceEEEEEccc
Confidence 357777 999999765 7899999999754
No 162
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.16 E-value=0.0044 Score=38.74 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.1
Q ss_pred EEEEE-eCCCCCCC---CCCCcEEEEEEccCc---ccccc
Q psy16587 93 LILTL-EDPNKPEE---NLGDIYLSATLYPRS---QEDRD 125 (130)
Q Consensus 93 l~V~l-~a~nL~~~---~~~dpyVk~~L~~~~---~~s~~ 125 (130)
|.|.| +|+||+.. +.+||||+++++... ++++.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~ 40 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKV 40 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECC
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeee
Confidence 45778 99999963 388999999999844 44444
No 163
>KOG1328|consensus
Probab=96.15 E-value=0.0029 Score=56.54 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcc
Q psy16587 23 DDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQ 72 (130)
Q Consensus 23 dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~ 72 (130)
|||+|.+.|||++|.+. ..+.|+.|+.-..+..-.|.++|.|.+..+..
T Consensus 257 DDFLGciNipl~EiP~~-Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 257 DDFLGCINIPLAEIPPD-GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cccccccccchhcCCcc-hHHHHhccCcccccccccceEEEEEEEeeecc
Confidence 89999999999999964 47889999986665677899999999988553
No 164
>PLN02230 phosphoinositide phospholipase C 4
Probab=96.12 E-value=0.016 Score=50.92 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=34.7
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCC
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPN 52 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~ 52 (130)
..|+|+|+|+|..++|||+|...||++.+..+-. .++|-+..
T Consensus 541 AllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~ 582 (598)
T PLN02230 541 ALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRK 582 (598)
T ss_pred eEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCC
Confidence 4699999999998899999999999999997643 34665543
No 165
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.10 E-value=0.0085 Score=41.54 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=24.8
Q ss_pred EEEEE-eCCCCCCCC---CCCcEEEEEEcc-Ccccccc
Q psy16587 93 LILTL-EDPNKPEEN---LGDIYLSATLYP-RSQEDRD 125 (130)
Q Consensus 93 l~V~l-~a~nL~~~~---~~dpyVk~~L~~-~~~~s~~ 125 (130)
|.|++ +|+||+..+ .+||||+++++. ..+++++
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~ 40 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVT 40 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeE
Confidence 46777 999999654 889999999965 3345554
No 166
>PLN02222 phosphoinositide phospholipase C 2
Probab=96.00 E-value=0.021 Score=49.98 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=34.8
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCC
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK 53 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~ 53 (130)
.-|+|.|||+|..+.|||+|.+.+|++.+..+-. .++|-+..+
T Consensus 524 AllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g 566 (581)
T PLN02222 524 ALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKG 566 (581)
T ss_pred eEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCc
Confidence 4689999999998899999999999999987632 346655443
No 167
>KOG0169|consensus
Probab=95.89 E-value=0.02 Score=51.12 Aligned_cols=39 Identities=28% Similarity=0.590 Sum_probs=32.4
Q ss_pred CcCCCCc-eEEEEEEeCCCCCCCCcceEEEEeCccccCCc
Q psy16587 2 PETTSGL-VVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40 (130)
Q Consensus 2 ~~~~~~~-~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~ 40 (130)
+|..|.- -|+|.|+|||..++|||+|+..+|++.+..+-
T Consensus 680 ~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy 719 (746)
T KOG0169|consen 680 QLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY 719 (746)
T ss_pred EEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce
Confidence 3444443 48999999999999999999999999998753
No 168
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.83 E-value=0.014 Score=39.68 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=22.9
Q ss_pred eCCCCCCCC----CCCcEEEEEEcc--Ccccccce
Q psy16587 98 EDPNKPEEN----LGDIYLSATLYP--RSQEDRDQ 126 (130)
Q Consensus 98 ~a~nL~~~~----~~dpyVk~~L~~--~~~~s~~~ 126 (130)
+|+|||..+ .+||||+++++. ...+|+++
T Consensus 10 ~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~ 44 (124)
T cd04044 10 SARGLKGSDIIGGTVDPYVTFSISNRRELARTKVK 44 (124)
T ss_pred cccCCCcccccCCCCCCeEEEEECCCCcceEeeee
Confidence 999999543 579999999987 56666654
No 169
>KOG0905|consensus
Probab=95.78 E-value=0.015 Score=54.40 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=39.3
Q ss_pred CCCcccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCC---CCCCCCcEEEEEEccCcccc
Q psy16587 55 EENLGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKP---EENLGDIYLSATLYPRSQED 123 (130)
Q Consensus 55 ~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~---~~~~~dpyVk~~L~~~~~~s 123 (130)
++-.|.|.|+++|. .+ .|+|.+ -||+|+ .+..||||||++|.++.++.
T Consensus 1509 ~~iggqV~LsIsY~--~~-------------------~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~ 1560 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NG-------------------TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKT 1560 (1639)
T ss_pred cccCceEEEEEEEc--Cc-------------------eEEEEhhhhcccccccCCCCCCcceeEEecCCchHh
Confidence 34568999999998 32 578999 999996 56699999999999987654
No 170
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=95.58 E-value=0.018 Score=41.87 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=28.5
Q ss_pred ccceEEEEE-eCCCCCCCCCCCcEEEEEEccCcc-cccce
Q psy16587 89 KCTDLILTL-EDPNKPEENLGDIYLSATLYPRSQ-EDRDQ 126 (130)
Q Consensus 89 ~~~~l~V~l-~a~nL~~~~~~dpyVk~~L~~~~~-~s~~~ 126 (130)
+.++|.|.+ ||+|||.++ +|||.+.|+.... |++++
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~--~~Y~~i~Ld~~~vaRT~v~ 46 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK--RYYCELCLDKTLYARTTSK 46 (146)
T ss_pred EEEEEEEEEEEccCCCCcC--CceEEEEECCEEEEEEEEE
Confidence 445787777 999999875 8999999988763 66654
No 171
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=95.51 E-value=0.017 Score=40.21 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=20.9
Q ss_pred eCCCCCCCC-------------CCCcEEEEEEccCc-ccccc
Q psy16587 98 EDPNKPEEN-------------LGDIYLSATLYPRS-QEDRD 125 (130)
Q Consensus 98 ~a~nL~~~~-------------~~dpyVk~~L~~~~-~~s~~ 125 (130)
+|+||+..+ .+||||+++++.+. .++++
T Consensus 12 ~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~ 53 (132)
T cd04014 12 EAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTST 53 (132)
T ss_pred EecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeE
Confidence 999998554 47999999998644 34444
No 172
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=95.47 E-value=0.012 Score=36.73 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSAS 30 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~ 30 (130)
....|.|.|||++.+++|++||++.
T Consensus 61 ~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 61 DLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred cccceEEEEEECCCCCCCCEEEEEC
Confidence 3456999999999998999999984
No 173
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.35 E-value=0.028 Score=37.90 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.1
Q ss_pred eCCCCCCCC---CCCcEEEEEEccC-cccccce
Q psy16587 98 EDPNKPEEN---LGDIYLSATLYPR-SQEDRDQ 126 (130)
Q Consensus 98 ~a~nL~~~~---~~dpyVk~~L~~~-~~~s~~~ 126 (130)
+|+||+.++ .+||||++.+... .++|+++
T Consensus 7 ~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~ 39 (115)
T cd04040 7 SAENLPSADRNGKSDPFVKFYLNGEKVFKTKTI 39 (115)
T ss_pred eeeCCCCCCCCCCCCCeEEEEECCCcceeecee
Confidence 999999764 7899999999643 3466554
No 174
>KOG1030|consensus
Probab=95.21 E-value=0.023 Score=42.33 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=30.5
Q ss_pred eE-EEEE-eCCCCCCCC---CCCcEEEEEEccCccccccee
Q psy16587 92 DL-ILTL-EDPNKPEEN---LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 92 ~l-~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s~~~~ 127 (130)
+| .|.+ +|.||...| .+||||-+.+|.+..||++..
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~ 46 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVY 46 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeec
Confidence 56 7888 999998544 789999999999999999754
No 175
>KOG2059|consensus
Probab=95.09 E-value=0.035 Score=49.41 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=51.5
Q ss_pred CceEEEEEEe-CCCCCCCCcceEEEEeCccccCCceeEEEEecCCC-C----CCCCCcccEEEEEEEec
Q psy16587 7 GLVVELQVFD-YDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP-N----KPEENLGDIYLSATLYP 69 (130)
Q Consensus 7 ~~~L~~~V~D-~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~-~----~~~~~~G~I~l~L~~~p 69 (130)
.-.|++.+|+ ++.+..++|+|++.+|+.........+-|+-|..- . +.+.++|.+.+.++|.-
T Consensus 209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 4578999999 88887899999999999998877777889988642 1 22678999999999875
No 176
>KOG1326|consensus
Probab=94.71 E-value=0.015 Score=53.25 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=27.8
Q ss_pred EEEEEEeCCCCCCCCcceEEEEeCccccCC
Q psy16587 10 VELQVFDYDWGLQDDFMGSASIDLTTLELG 39 (130)
Q Consensus 10 L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~ 39 (130)
|.|+|||.|.|++|||+|...++|++...+
T Consensus 941 l~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p 970 (1105)
T KOG1326|consen 941 LIIQIWDNDKFSKDDFLGALELDLSDMPAP 970 (1105)
T ss_pred eEEEecccCccChhhhhhheeechhhCcCC
Confidence 899999999999999999999999977654
No 177
>PLN02352 phospholipase D epsilon
Probab=94.58 E-value=0.082 Score=47.63 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=52.2
Q ss_pred CCCC-ceEEEEEEeCCCCCCCCcceEEEEeCccccCCce-eEEEEecCCCCCCCCCcccEEEEEEEecCcch
Q psy16587 4 TTSG-LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRC-TDLILTLEDPNKPEENLGDIYLSATLYPRSQE 73 (130)
Q Consensus 4 ~~~~-~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~-~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~ 73 (130)
.... ..+.|.|-| .-.+||.+.||..++-.+.. ++-|+++-+..+++-..-.|+++|.|.|...+
T Consensus 69 ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 69 AHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred eeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 3444 579999988 48899999999999988866 89999998766544433699999999997654
No 178
>KOG1031|consensus
Probab=92.93 E-value=0.24 Score=43.99 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCccccCC----------ceeEEEEecCCCCCCCCCcccEEEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLELG----------RCTDLILTLEDPNKPEENLGDIYLSAT 66 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~----------~~~~~~~~L~~~~~~~~~~G~I~l~L~ 66 (130)
...+|++.+.|+|.++.+|.||.+.|++..+-++ ....-|+++-+.-+ .-.|+|.+-+.
T Consensus 66 qdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivk 134 (1169)
T KOG1031|consen 66 QDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVK 134 (1169)
T ss_pred ccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEE
Confidence 3568999999999999999999999999877653 33456998876432 45688876554
No 179
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.16 E-value=0.16 Score=50.26 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=28.7
Q ss_pred eEEEEE-eCCCCCC-CCCCCcEEEEEEccC-ccccccee
Q psy16587 92 DLILTL-EDPNKPE-ENLGDIYLSATLYPR-SQEDRDQN 127 (130)
Q Consensus 92 ~l~V~l-~a~nL~~-~~~~dpyVk~~L~~~-~~~s~~~~ 127 (130)
-|.|.+ +|.||+. ++.+||||++++|.. .+|+|++.
T Consensus 1981 ~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk 2019 (2102)
T PLN03200 1981 SLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVS 2019 (2102)
T ss_pred ceEEEEeeccccccccCCCCCeEEEEECCCCcccccccC
Confidence 348888 9999994 368999999999966 66677753
No 180
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=91.97 E-value=0.13 Score=35.49 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=18.5
Q ss_pred CCCCcEEEEEEccCccccccee
Q psy16587 106 NLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
+.+||||+++++...++|++..
T Consensus 18 g~~dpYv~v~l~~~~~kT~v~~ 39 (126)
T cd08682 18 GTNDAYVIIQLGKEKYSTSVKE 39 (126)
T ss_pred cCCCceEEEEECCeeeeeeeec
Confidence 4689999999998888888754
No 181
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=91.10 E-value=0.16 Score=35.81 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=18.7
Q ss_pred CCCCcEEEEEEccCccccccee
Q psy16587 106 NLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
+.+||||.++++....+|++..
T Consensus 22 g~sDPYv~i~~g~~~~rTk~~~ 43 (126)
T cd08379 22 GSTDAYCVAKYGPKWVRTRTVE 43 (126)
T ss_pred CCCCeeEEEEECCEEeEcCccc
Confidence 4789999999999988888753
No 182
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=90.75 E-value=0.39 Score=35.18 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=12.4
Q ss_pred CCCCC---CCCcEEEEEEc
Q psy16587 102 KPEEN---LGDIYLSATLY 117 (130)
Q Consensus 102 L~~~~---~~dpyVk~~L~ 117 (130)
||++. .+||||||.+.
T Consensus 16 l~~~~~~~~~DpYVk~~l~ 34 (155)
T cd08690 16 LPSGWNPKDLDTYVKFEFP 34 (155)
T ss_pred cCCCcCCCCCCeEEEEEEe
Confidence 66543 68999999984
No 183
>KOG1327|consensus
Probab=90.52 E-value=0.99 Score=39.26 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=58.3
Q ss_pred CceEEEEEEeCCCC----CCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccc
Q psy16587 7 GLVVELQVFDYDWG----LQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGT 82 (130)
Q Consensus 7 ~~~L~~~V~D~D~~----~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~ 82 (130)
.+.|+|.+||-|.. +.+||+|++.-.|+++........-+.++. +.....|.|-++..=.-...
T Consensus 69 vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~--~~~~~~g~iti~aee~~~~~---------- 136 (529)
T KOG1327|consen 69 VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP--GKNAGSGTITISAEEDESDN---------- 136 (529)
T ss_pred eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc--CccCCcccEEEEeecccccC----------
Confidence 46899999999964 689999999999999887654433333332 12345577766553111110
Q ss_pred ccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEc
Q psy16587 83 SESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLY 117 (130)
Q Consensus 83 ~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~ 117 (130)
..+... .|++|...+ .+|||..+.=.
T Consensus 137 ---------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~ 166 (529)
T KOG1327|consen 137 ---------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKR 166 (529)
T ss_pred ---------ceeeeeeeeeecCcccccccCCcceEEEEe
Confidence 123333 789998765 78999888543
No 184
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=90.37 E-value=0.57 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=24.8
Q ss_pred EEEEE-eCCCCCCC---CCCCcEEEEEEccC---cccccc
Q psy16587 93 LILTL-EDPNKPEE---NLGDIYLSATLYPR---SQEDRD 125 (130)
Q Consensus 93 l~V~l-~a~nL~~~---~~~dpyVk~~L~~~---~~~s~~ 125 (130)
+.|.| +|++|+.. ..++|||++++... ..+++.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~ 41 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKV 41 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeE
Confidence 35667 99999855 36899999999876 455554
No 185
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=90.00 E-value=0.26 Score=35.89 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCcceEEEEeCccccCCceeEEEEec
Q psy16587 23 DDFMGSASIDLTTLELGRCTDLILTL 48 (130)
Q Consensus 23 dD~iG~~~i~L~~v~~~~~~~~~~~L 48 (130)
|++||++.++|+++.. ...+.|++|
T Consensus 129 d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 129 DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999999999994 457889876
No 186
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=89.76 E-value=0.23 Score=34.19 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=18.4
Q ss_pred CCCCcEEEEEEccCccccccee
Q psy16587 106 NLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
+.+||||+++++...++++++.
T Consensus 19 g~~dpyv~v~~~~~~~rT~v~~ 40 (127)
T cd04022 19 GSSSAYVELDFDGQKKRTRTKP 40 (127)
T ss_pred CCcCcEEEEEECCEEecceeEc
Confidence 4689999999999888887753
No 187
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=89.66 E-value=0.62 Score=28.75 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred EEEE-eCCCCCC---CCCCCcEEEEEEcc-Ccccccce
Q psy16587 94 ILTL-EDPNKPE---ENLGDIYLSATLYP-RSQEDRDQ 126 (130)
Q Consensus 94 ~V~l-~a~nL~~---~~~~dpyVk~~L~~-~~~~s~~~ 126 (130)
.|.| +|++|+. ...++|||.+++.. ...+|+..
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~ 39 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVV 39 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEeccee
Confidence 4667 9999975 23789999999987 66666543
No 188
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=89.21 E-value=0.67 Score=31.55 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=17.1
Q ss_pred CCCcEEEEEEccCcccccce
Q psy16587 107 LGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 107 ~~dpyVk~~L~~~~~~s~~~ 126 (130)
.+||||+++++....+|+++
T Consensus 20 ~~DPyv~v~~~~~~~kT~v~ 39 (123)
T cd04025 20 TSDPFVRVFYNGQTLETSVV 39 (123)
T ss_pred CcCceEEEEECCEEEeceee
Confidence 67999999998877787775
No 189
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=88.91 E-value=0.64 Score=32.12 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=20.2
Q ss_pred eCCCCCCC--CCCCcEEEEEEccC-cccccce
Q psy16587 98 EDPNKPEE--NLGDIYLSATLYPR-SQEDRDQ 126 (130)
Q Consensus 98 ~a~nL~~~--~~~dpyVk~~L~~~-~~~s~~~ 126 (130)
+|+.++.. +.+||||+++++.. .++|+++
T Consensus 10 ~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~ 41 (125)
T cd04021 10 SAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVS 41 (125)
T ss_pred eeECCCCCcCCCCCeEEEEEECCcccEEeeee
Confidence 67633332 36899999999876 6666653
No 190
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=88.22 E-value=0.86 Score=38.24 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=34.9
Q ss_pred cceEEEEeCcc-ccCCceeEEEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 25 FMGSASIDLTT-LELGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 25 ~iG~~~i~L~~-v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
.+|++.||+.. ++.++..+.|+++-+........|.+ +.++|.-
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEeee
Confidence 48999999999 78888999999998866545566777 6776654
No 191
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=87.51 E-value=4.8 Score=27.97 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=45.0
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCC--ceeEEEEecCCCCCCCCCcccEEEEEEEecCcc
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELG--RCTDLILTLEDPNKPEENLGDIYLSATLYPRSQ 72 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~--~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~ 72 (130)
...+.|.|+..+..++.-.+|++.|+|+++-.. ......+.|... ....-.+.+++++.+-.+
T Consensus 75 ~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 75 PKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSELRE 139 (143)
T ss_pred eEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEECcc
Confidence 356889999986432335999999999999874 566777777763 123467788888777543
No 192
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=87.50 E-value=0.46 Score=32.33 Aligned_cols=23 Identities=9% Similarity=0.058 Sum_probs=18.5
Q ss_pred CCCCCcEEEEEEccCccccccee
Q psy16587 105 ENLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 105 ~~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.+.+||||+++++...++|+++.
T Consensus 21 ~~~~dPyv~v~~~~~~~kT~~~~ 43 (128)
T cd04024 21 KGKSDPYAILSVGAQRFKTQTIP 43 (128)
T ss_pred CCCcCCeEEEEECCEEEecceec
Confidence 34789999999988888877654
No 193
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=87.12 E-value=0.38 Score=34.59 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=18.9
Q ss_pred CCCCcEEEEEEccCccccccee
Q psy16587 106 NLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
..+||||++++++..++|+++.
T Consensus 20 ~~sDPYV~v~~g~~~~kT~vvk 41 (145)
T cd04038 20 TSSDPYVVLTLGNQKVKTRVIK 41 (145)
T ss_pred CCcCcEEEEEECCEEEEeeeEc
Confidence 4789999999999888888753
No 194
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=86.79 E-value=0.51 Score=32.95 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.0
Q ss_pred CCCCCcEEEEEEccCccccccee
Q psy16587 105 ENLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 105 ~~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.+.+||||+++++...++|+++.
T Consensus 19 ~g~~dpyv~v~~~~~~~kT~v~~ 41 (135)
T cd04017 19 SGLSDPFARVSFLNQSQETEVIK 41 (135)
T ss_pred CCCCCCEEEEEECCeeeEeeeEc
Confidence 34789999999998888887753
No 195
>KOG0905|consensus
Probab=86.72 E-value=0.4 Score=45.42 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=43.1
Q ss_pred CcCCCC-ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCC
Q psy16587 2 PETTSG-LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50 (130)
Q Consensus 2 ~~~~~~-~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~ 50 (130)
|++... +.|++.||.-+.+..+.+||.+.|||.++++.+...-|+.|..
T Consensus 1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 444444 7899999999999999999999999999999998889998875
No 196
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.47 E-value=0.5 Score=34.32 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.6
Q ss_pred CCCCcEEEEEEccCcccccce
Q psy16587 106 NLGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~~s~~~ 126 (130)
+.+||||++.++....+|++.
T Consensus 33 ~~~DPYV~V~~~g~~~kT~v~ 53 (151)
T cd04018 33 ELVDPYVEVSFAGQKVKTSVK 53 (151)
T ss_pred CCcCcEEEEEECCEeeecceE
Confidence 478999999999888887764
No 197
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=86.28 E-value=0.59 Score=32.23 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=16.6
Q ss_pred CCCCcEEEEEEccC-ccccccee
Q psy16587 106 NLGDIYLSATLYPR-SQEDRDQN 127 (130)
Q Consensus 106 ~~~dpyVk~~L~~~-~~~s~~~~ 127 (130)
+.+||||+++++.. ..+|+++.
T Consensus 20 g~sDpYv~v~l~~~~~~kT~v~~ 42 (121)
T cd08401 20 KMRDCYCTVNLDQEEVFRTKTVE 42 (121)
T ss_pred CCcCcEEEEEECCccEEEeeEEE
Confidence 47899999999765 35676654
No 198
>KOG2060|consensus
Probab=85.97 E-value=0.9 Score=38.04 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=23.4
Q ss_pred eEEEEE-eCCCCCCC----CCCCcEEEEEEccCcc
Q psy16587 92 DLILTL-EDPNKPEE----NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~----~~~dpyVk~~L~~~~~ 121 (130)
.+.|.| +|++|-.. .+++||||++|..++.
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~ 304 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGF 304 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCc
Confidence 457777 99999622 2999999999987753
No 199
>KOG1327|consensus
Probab=85.54 E-value=0.72 Score=40.09 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=31.4
Q ss_pred CCCCceEEEEEEeCCCCCCCCcceEEEEeCccccC
Q psy16587 4 TTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLEL 38 (130)
Q Consensus 4 ~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~ 38 (130)
.++..++.+.|||||...+||+||.+..+++.+..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 35678999999999999899999999999998874
No 200
>PLN03008 Phospholipase D delta
Probab=85.23 E-value=1 Score=41.26 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=14.8
Q ss_pred CCCcEEEEEEccCc-ccccce
Q psy16587 107 LGDIYLSATLYPRS-QEDRDQ 126 (130)
Q Consensus 107 ~~dpyVk~~L~~~~-~~s~~~ 126 (130)
.+||||++.|+... .|+++.
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi 96 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVL 96 (868)
T ss_pred CCCceEEEEECCcceeeEEeC
Confidence 56999999998653 366654
No 201
>KOG1264|consensus
Probab=85.21 E-value=1.2 Score=41.03 Aligned_cols=62 Identities=13% Similarity=0.241 Sum_probs=46.7
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcc
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQ 72 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~ 72 (130)
.-|+|.|||.|.|+--.|||.|..|+..|.-+- --++|...-+.+-++-.+++.+...|..+
T Consensus 1132 A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1132 AFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred EEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccC
Confidence 359999999999998889999999999988642 23456554443455677888887777554
No 202
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=84.97 E-value=1.6 Score=29.63 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=15.1
Q ss_pred CCCcEEEEEEcc-Ccccccce
Q psy16587 107 LGDIYLSATLYP-RSQEDRDQ 126 (130)
Q Consensus 107 ~~dpyVk~~L~~-~~~~s~~~ 126 (130)
.+||||+++++. ..++|+++
T Consensus 20 ~~Dpyv~v~~~~~~~~kT~~~ 40 (121)
T cd04042 20 TSDPYVKFKYGGKTVYKSKTI 40 (121)
T ss_pred CCCCeEEEEECCEEEEEeeec
Confidence 789999999976 35566553
No 203
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=84.12 E-value=0.73 Score=31.81 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=17.8
Q ss_pred CCCCcEEEEEEccCccccccee
Q psy16587 106 NLGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~~s~~~~ 127 (130)
+.+||||+++++...++|+.+.
T Consensus 20 g~~DPyv~v~~~~~~~kT~~v~ 41 (127)
T cd04027 20 GTSDPYVTVQVGKTKKRTKTIP 41 (127)
T ss_pred CCcCcEEEEEECCEeeecceec
Confidence 4689999999988777777653
No 204
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=81.68 E-value=2.5 Score=28.82 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=14.7
Q ss_pred CCCcEEEEEEccCc-ccccce
Q psy16587 107 LGDIYLSATLYPRS-QEDRDQ 126 (130)
Q Consensus 107 ~~dpyVk~~L~~~~-~~s~~~ 126 (130)
.+||||+++++... .+|+++
T Consensus 20 ~~DPYv~v~~~~~~~~kT~v~ 40 (121)
T cd04054 20 SSDPYCIVKVDNEVIIRTATV 40 (121)
T ss_pred CCCceEEEEECCEeeeeeeeE
Confidence 77999999997543 366554
No 205
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=81.30 E-value=2 Score=29.91 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=24.1
Q ss_pred EEEE-eCCCCCC------CCCCCcEEEEEEccC-cccccc
Q psy16587 94 ILTL-EDPNKPE------ENLGDIYLSATLYPR-SQEDRD 125 (130)
Q Consensus 94 ~V~l-~a~nL~~------~~~~dpyVk~~L~~~-~~~s~~ 125 (130)
.|.| .+||+.- ...+||||.++++.. ..+|+.
T Consensus 2 ~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~ 41 (109)
T cd08689 2 TITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP 41 (109)
T ss_pred EEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC
Confidence 5777 8999872 237899999999887 555554
No 206
>KOG1328|consensus
Probab=80.13 E-value=0.7 Score=41.97 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLEL 38 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~ 38 (130)
+..|.|.|+|.|..+.|||-|+|.+.|.+|.-
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 56799999999999999999999999998874
No 207
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=79.16 E-value=4.2 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=15.5
Q ss_pred CCCcEEEEEEc-cCcccccce
Q psy16587 107 LGDIYLSATLY-PRSQEDRDQ 126 (130)
Q Consensus 107 ~~dpyVk~~L~-~~~~~s~~~ 126 (130)
.+||||++++. ...++|+++
T Consensus 20 ~~dpyv~v~~~~~~~~kT~v~ 40 (123)
T cd08382 20 LPDPFAVITVDGGQTHSTDVA 40 (123)
T ss_pred CCCcEEEEEECCccceEccEE
Confidence 68999999996 556676654
No 208
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=78.19 E-value=3.1 Score=28.25 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=16.7
Q ss_pred CCCcEEEEEEccCcccccce
Q psy16587 107 LGDIYLSATLYPRSQEDRDQ 126 (130)
Q Consensus 107 ~~dpyVk~~L~~~~~~s~~~ 126 (130)
.+||||+++++...+++++.
T Consensus 21 ~~dpyv~v~~~~~~~~T~~~ 40 (124)
T cd04049 21 KIDPYVIIQCRTQERKSKVA 40 (124)
T ss_pred CcCceEEEEECCEeeeeeEc
Confidence 78999999998877777664
No 209
>KOG1326|consensus
Probab=77.61 E-value=1.2 Score=41.46 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=26.1
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCcc
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTT 35 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~ 35 (130)
.+.|.+.|||+|-+++||.||+..|+|..
T Consensus 675 ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 675 EKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hhcceeEEEEeecccccchhhceehhhhh
Confidence 35689999999999999999999999874
No 210
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=77.43 E-value=2.9 Score=28.76 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.1
Q ss_pred CCCCcEEEEEEccCcc
Q psy16587 106 NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 106 ~~~dpyVk~~L~~~~~ 121 (130)
+.+||||+++++....
T Consensus 19 g~~DPYv~v~~~~~~~ 34 (124)
T cd04037 19 GKSDPYLKIKLGKKKI 34 (124)
T ss_pred CCCCcEEEEEECCeec
Confidence 3789999999987653
No 211
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=75.65 E-value=2.2 Score=28.97 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=17.2
Q ss_pred CCCCCcEEEEEEcc-Ccccccce
Q psy16587 105 ENLGDIYLSATLYP-RSQEDRDQ 126 (130)
Q Consensus 105 ~~~~dpyVk~~L~~-~~~~s~~~ 126 (130)
.+.+||||+++++. ..+++++.
T Consensus 18 ~~~~dpYv~v~~~~~~~~~T~~~ 40 (125)
T cd04051 18 FGKMKVYAVVWIDPSHKQSTPVD 40 (125)
T ss_pred ccCCceEEEEEECCCcccccccc
Confidence 34789999999988 67776653
No 212
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=74.98 E-value=4.9 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEE
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASI 31 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i 31 (130)
|.....|++||.|.+..||+|+++.-
T Consensus 10 P~~~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 10 PAKNVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred cCCCCEEEEEECCCCCCCceeEEEEE
Confidence 44556799999999789999999765
No 213
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.90 E-value=2.6 Score=30.07 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCCcEEEEEEccC---ccccccee
Q psy16587 107 LGDIYLSATLYPR---SQEDRDQN 127 (130)
Q Consensus 107 ~~dpyVk~~L~~~---~~~s~~~~ 127 (130)
.+|||||.+|.+. .|++.+.+
T Consensus 24 ~sD~yVK~~L~~~~~~kqkTDVHy 47 (133)
T cd08374 24 MSDIYVKGWLDGLEEDKQKTDVHY 47 (133)
T ss_pred ccCeEEEEEEccCcccccccceEE
Confidence 6999999999874 34554443
No 214
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=71.21 E-value=13 Score=25.32 Aligned_cols=60 Identities=20% Similarity=0.130 Sum_probs=40.5
Q ss_pred ceEEEEEEeCCC---CCCCCcceEEEEeCcccc--------------CCceeEEEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 8 LVVELQVFDYDW---GLQDDFMGSASIDLTTLE--------------LGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 8 ~~L~~~V~D~D~---~~~dD~iG~~~i~L~~v~--------------~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
.+|++.|++--. .....+||.+.|+|...- ......-.++|.++.. +..|+|.+.++++=
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~--~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG--NPVGEISLYIRLSC 105 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC--ceeeeEEEEEEEec
Confidence 467777766543 246678999999998654 2334455667776544 57799988887653
No 215
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=70.61 E-value=18 Score=29.83 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred CCceEEEEEEeCC-CCCCCCcceEEEEeCccc---cCC--ceeEEEEecCCCCCC-CCCcccEEEEEEEecCcc
Q psy16587 6 SGLVVELQVFDYD-WGLQDDFMGSASIDLTTL---ELG--RCTDLILTLEDPNKP-EENLGDIYLSATLYPRSQ 72 (130)
Q Consensus 6 ~~~~L~~~V~D~D-~~~~dD~iG~~~i~L~~v---~~~--~~~~~~~~L~~~~~~-~~~~G~I~l~L~~~p~~~ 72 (130)
...+|++++|-.| ..++-+.+|.+.+||-++ ..+ .....|++|-.-+++ ....=+|.++|+......
T Consensus 63 ~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 63 QRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 4678999999999 677999999999999999 444 456789999664211 223468888888877554
No 216
>KOG1011|consensus
Probab=69.64 E-value=4.8 Score=36.54 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=33.1
Q ss_pred cccccceE-EEEE-eCCCCCCC---CCCCcEEEEEEccCcccccc
Q psy16587 86 YSQKCTDL-ILTL-EDPNKPEE---NLGDIYLSATLYPRSQEDRD 125 (130)
Q Consensus 86 ~s~~~~~l-~V~l-~a~nL~~~---~~~dpyVk~~L~~~~~~s~~ 125 (130)
.++-|++- ++++ -|++|-+. +.+||||-..+|...++++.
T Consensus 289 gsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrt 333 (1283)
T KOG1011|consen 289 GSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRT 333 (1283)
T ss_pred cccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHh
Confidence 56788874 7777 99999854 48999999999999888875
No 217
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=67.84 E-value=18 Score=26.45 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=34.5
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecC
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPR 70 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~ 70 (130)
+..|.|.|||++...+.-++|.+.++|=+-+. .|.. |...+.+.....
T Consensus 78 ~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~g--------~Lr~--------G~~~l~lw~~~~ 125 (159)
T cd08397 78 NSQLAITIWDVSGTGKAVPFGGTTLSLFNKDG--------TLRR--------GRQKLRVWPDVE 125 (159)
T ss_pred hheEEEEEEEecCCCCceEEEEEEEeeECCCC--------cEec--------CCEEEEEEeCCC
Confidence 45799999999876677899999999876542 2333 777777764443
No 218
>PLN02964 phosphatidylserine decarboxylase
Probab=67.64 E-value=2.9 Score=37.30 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEE--EecCCCCCCCCCcccEEEEEE-EecCcc
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLI--LTLEDPNKPEENLGDIYLSAT-LYPRSQ 72 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~--~~L~~~~~~~~~~G~I~l~L~-~~p~~~ 72 (130)
...+|.|||+|+++.|+..|-++++|..+...+..+.+ +.+-++++.+..+|.++.++- +.|+..
T Consensus 109 ~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~iLg~ilrslG~~~pte~ 176 (644)
T PLN02964 109 HLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKVVGSIFVSCSIEDPVET 176 (644)
T ss_pred ceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcCHHHHHHHhCCCCCCHH
Confidence 34699999999999999999999999988876554432 223344433334566666665 456554
No 219
>KOG1013|consensus
Probab=66.92 E-value=0.75 Score=37.92 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=35.1
Q ss_pred cccEEEEEEEecCcchhhhccccccccccccccceEEEEE-eCCCCCCCC---CCCcEEEEEEccCcccc
Q psy16587 58 LGDIYLSATLYPRSQEDRDQEASGTSESYSQKCTDLILTL-EDPNKPEEN---LGDIYLSATLYPRSQED 123 (130)
Q Consensus 58 ~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s~~~~~l~V~l-~a~nL~~~~---~~dpyVk~~L~~~~~~s 123 (130)
+|.+-++++|..... .+-.+| .|+.|..|+ ..|||||.++++..-+.
T Consensus 79 lg~~~~~~~y~~~~~-------------------~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl 129 (362)
T KOG1013|consen 79 LGALEFELLYDSESR-------------------MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKL 129 (362)
T ss_pred ccchhhhhhhhhhhh-------------------hcceeechhcccchhhhhhhcchHHhhhcccchhhh
Confidence 577777776666553 566677 999999886 78999999998765443
No 220
>KOG1011|consensus
Probab=63.89 E-value=5.1 Score=36.34 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=45.1
Q ss_pred eEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEE
Q psy16587 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSA 65 (130)
Q Consensus 9 ~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L 65 (130)
.|+|+|-||=....|..+|-+.++|.++.-.+.--.|++|...-+ -.+-|-+.|++
T Consensus 1196 EL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrih-mDeTGLtiLRI 1251 (1283)
T KOG1011|consen 1196 ELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIH-MDETGLTILRI 1251 (1283)
T ss_pred EEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecccccc-ccccchhHHHH
Confidence 599999999888778899999999999998888899999975322 34446666555
No 221
>KOG2060|consensus
Probab=59.12 E-value=3.1 Score=34.89 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=41.3
Q ss_pred CCCCceEEEEEE-eCCCCCCCCcceEEEEeCccccCCc-eeEEEEecCCCC
Q psy16587 4 TTSGLVVELQVF-DYDWGLQDDFMGSASIDLTTLELGR-CTDLILTLEDPN 52 (130)
Q Consensus 4 ~~~~~~L~~~V~-D~D~~~~dD~iG~~~i~L~~v~~~~-~~~~~~~L~~~~ 52 (130)
+-+++.|++.|| ||-|..++-|||.+.|-|.++++.. ....|++|-.+.
T Consensus 331 sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 331 SPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred CCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 346788999999 5667778899999999999999987 778899997653
No 222
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=59.08 E-value=18 Score=26.36 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCCCCCCcceEEEEeC
Q psy16587 9 VVELQVFDYDWGLQDDFMGSASIDL 33 (130)
Q Consensus 9 ~L~~~V~D~D~~~~dD~iG~~~i~L 33 (130)
.|.|+||-.|.++++.+.|-+.+.|
T Consensus 77 ~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 77 QLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred eEEEEEEEEcccCCeEEeEEeEEEe
Confidence 6999999999999999999777765
No 223
>PRK14296 chaperone protein DnaJ; Provisional
Probab=58.89 E-value=65 Score=26.65 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCCCC---CCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhccccccccc
Q psy16587 9 VVELQVFDYDWGLQ---DDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSES 85 (130)
Q Consensus 9 ~L~~~V~D~D~~~~---dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~ 85 (130)
.++|.|-....|.+ +|++=.+.|+|.+.-++....+. .| + |.+.+ ..-|-.+
T Consensus 257 ~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~-tl-d--------G~~~v--~ip~~t~------------- 311 (372)
T PRK14296 257 IIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK-TL-D--------GDIKY--KLPKSIN------------- 311 (372)
T ss_pred EEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEee-CC-C--------CCEEE--EECCccC-------------
Confidence 46777777777754 68999999999999988765442 12 2 66444 3334222
Q ss_pred cccccceEEEEEeCCCCCCC----CCCCcEEEEEEccCc
Q psy16587 86 YSQKCTDLILTLEDPNKPEE----NLGDIYLSATLYPRS 120 (130)
Q Consensus 86 ~s~~~~~l~V~l~a~nL~~~----~~~dpyVk~~L~~~~ 120 (130)
.+-.+.|+++.+|.. ..+|.||+|.+.--.
T Consensus 312 -----~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~ 345 (372)
T PRK14296 312 -----SNELIIINNKGLYKSINKDKRGDLIIKVNIVVPK 345 (372)
T ss_pred -----CCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCC
Confidence 122556689999832 368999999986543
No 224
>PRK14297 chaperone protein DnaJ; Provisional
Probab=51.72 E-value=1.1e+02 Score=25.34 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=51.6
Q ss_pred eEEEEEEeCCCC--CCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWG--LQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~--~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|-..+.| ..+|+.-.+.|+|.+.-.+....+. .-+ |.+ .+..-|-..
T Consensus 256 ~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~--~ld--------g~~--~v~ip~g~~-------------- 309 (380)
T PRK14297 256 YINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVP--TVD--------GEV--KYEVPAGTQ-------------- 309 (380)
T ss_pred EEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEE--cCC--------CcE--EEEECCCcC--------------
Confidence 355566666666 4678888999999888887655442 222 654 344334221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
..-.+.|+++.+|.. ..+|.||+|.+.--.
T Consensus 310 ----~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~ 342 (380)
T PRK14297 310 ----PGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPK 342 (380)
T ss_pred ----CCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCC
Confidence 122556678888842 268999999886543
No 225
>PRK14299 chaperone protein DnaJ; Provisional
Probab=51.40 E-value=78 Score=25.16 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|-..+.|. .+|+.-.+.|+|.+.-.+....+. .-+ |.+.+. .-|-.+
T Consensus 185 ~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~--tld--------G~~~v~--ip~~~~-------------- 238 (291)
T PRK14299 185 YLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVM--TLD--------GPVEVT--IPPRTQ-------------- 238 (291)
T ss_pred EEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEE--CCC--------CCEEEE--eCCCcC--------------
Confidence 4556666666664 579999999999999888655442 222 654443 334221
Q ss_pred ccccceEEEEEeCCCCCCC--CCCCcEEEEEEccCcccc
Q psy16587 87 SQKCTDLILTLEDPNKPEE--NLGDIYLSATLYPRSQED 123 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~--~~~dpyVk~~L~~~~~~s 123 (130)
.+-.+.|+++.+|.. ..+|.||+|.+..-.+=+
T Consensus 239 ----~g~~~rl~g~G~p~~~~~~GDL~v~~~V~~P~~l~ 273 (291)
T PRK14299 239 ----AGRKLRLKGKGWPRGPAGRGDQYAEVRITIPTRPT 273 (291)
T ss_pred ----CCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
Confidence 122556688888843 368999999987665433
No 226
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=50.93 E-value=40 Score=23.62 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=25.1
Q ss_pred CceEEEEEEeCCCCCCC----CcceEEEEeCcccc
Q psy16587 7 GLVVELQVFDYDWGLQD----DFMGSASIDLTTLE 37 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~d----D~iG~~~i~L~~v~ 37 (130)
...|.|.||+.+..... .+||.+.++|=+..
T Consensus 52 ~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 52 EARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp TEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred hHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 45799999999987555 69999999998764
No 227
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=50.82 E-value=83 Score=23.55 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=36.1
Q ss_pred eEEEEeCc----cccCCceeEEEEecCCCCCC-CCCcccEEEEEEEecCcch
Q psy16587 27 GSASIDLT----TLELGRCTDLILTLEDPNKP-EENLGDIYLSATLYPRSQE 73 (130)
Q Consensus 27 G~~~i~L~----~v~~~~~~~~~~~L~~~~~~-~~~~G~I~l~L~~~p~~~~ 73 (130)
-.|.++|. .+..++..+..+.|+-|.++ +.++|...+.+++....+.
T Consensus 40 P~A~v~l~~~~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~ 91 (199)
T PF06775_consen 40 PYANVSLSNKARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGK 91 (199)
T ss_pred cEEEEEeccCccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCc
Confidence 44555555 77788999999999877654 6789999999998876664
No 228
>PRK14283 chaperone protein DnaJ; Provisional
Probab=49.16 E-value=1.3e+02 Score=24.81 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|.....|. .+|+.-.+.|+|.+.-.+....+. .| + |.| .+..-|-..
T Consensus 254 iv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~-tl-d--------G~i--~v~ip~g~~-------------- 307 (378)
T PRK14283 254 YVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVP-TI-D--------GPV--ELKIPAGTQ-------------- 307 (378)
T ss_pred EEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEE-cC-C--------ceE--EEEeCCCCC--------------
Confidence 4666776666653 678999999999998888765543 12 2 643 444434221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
.+-.+.|+++.+|.. ..+|.||+|.+.--.
T Consensus 308 ----~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~ 340 (378)
T PRK14283 308 ----SGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPK 340 (378)
T ss_pred ----CCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 123556688888843 258999999886553
No 229
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=48.30 E-value=62 Score=23.83 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=50.4
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCcee--EEEEecCCCCCC-CCCcccEEEEEEEecCc
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCT--DLILTLEDPNKP-EENLGDIYLSATLYPRS 71 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~--~~~~~L~~~~~~-~~~~G~I~l~L~~~p~~ 71 (130)
...+++++.|.=-|.+...-++|+-.++=..+-..+.. ...++|.+.... .-..|.|.++|.+.|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 34578999999999887779999998887777655554 666667665431 13689999999999965
No 230
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=47.76 E-value=13 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=17.5
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEEEeCcccc
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTLE 37 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~ 37 (130)
-+..+.|.|||+... +.=+||-.=+.|++|-
T Consensus 57 k~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 57 KNNEEEVIVYDKGGD-QPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEEEeCCCC-eecceeeehhhHHHHH
Confidence 455666666666433 4446666555555543
No 231
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=47.23 E-value=41 Score=23.88 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=24.9
Q ss_pred CceEEEEEEeCCCCC--CCCcceEEEEeCcccc
Q psy16587 7 GLVVELQVFDYDWGL--QDDFMGSASIDLTTLE 37 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~ 37 (130)
+..|.|.||+.+... ++-+||.+.++|=+.+
T Consensus 76 ~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 76 EARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred hheEEEEEEEEecCCCCcceEEEEEeEEeEccc
Confidence 456999999998664 5789999999987654
No 232
>PRK14301 chaperone protein DnaJ; Provisional
Probab=47.07 E-value=1.6e+02 Score=24.26 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=55.4
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|-..+.|. .+|+.-.+.|+|.+.-++....+. .-+ |.| .+..-|-..
T Consensus 248 iv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~--tld--------G~i--~v~ip~g~~-------------- 301 (373)
T PRK14301 248 YVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVP--TLD--------DPV--TLDIPKGTQ-------------- 301 (373)
T ss_pred EEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEe--cCC--------ccE--EEEECCCcC--------------
Confidence 4677777777764 689999999999999888765542 222 654 444334221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
.+-.+.|+++.+|.. ..+|.||+|.+..-..
T Consensus 302 ----~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~ 335 (373)
T PRK14301 302 ----SGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTK 335 (373)
T ss_pred ----CCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCC
Confidence 123566688888843 2689999999975543
No 233
>PLN02270 phospholipase D alpha
Probab=43.90 E-value=32 Score=31.71 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=22.4
Q ss_pred eEEEEE-eCCCCCCC---------------------CCCCcEEEEEEccCc
Q psy16587 92 DLILTL-EDPNKPEE---------------------NLGDIYLSATLYPRS 120 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~---------------------~~~dpyVk~~L~~~~ 120 (130)
.|-|+| +|+|||.+ +.+||||-+.|+...
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~ 59 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKAR 59 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcE
Confidence 467788 99999853 256999999997654
No 234
>KOG3837|consensus
Probab=40.98 E-value=62 Score=27.93 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=49.5
Q ss_pred ceEEEEEEeCCCC-CCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchh
Q psy16587 8 LVVELQVFDYDWG-LQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQED 74 (130)
Q Consensus 8 ~~L~~~V~D~D~~-~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~ 74 (130)
..+.|+||-.-.| .+|-++|.+.|-|..++..-.....++|.|..+ .-.|.+-+.++..---++.
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK--~vGGkLevKvRiR~Pi~~~ 509 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRK--AVGGKLEVKVRIRQPIGDA 509 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccccc--ccCCeeEEEEEEecccchh
Confidence 3588999999866 467799999999999998777788888877433 3568888888765544433
No 235
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.16 E-value=1.5e+02 Score=24.85 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=53.8
Q ss_pred EEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhccccccccccc
Q psy16587 10 VELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESYS 87 (130)
Q Consensus 10 L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s 87 (130)
+.|.|--.+.|. .+|+.-++.|++.+.-++..+++. .|+ |. +.|..-|-.+
T Consensus 249 v~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vp-tl~---------g~--~~l~ip~Gtq--------------- 301 (371)
T COG0484 249 VFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVP-TLD---------GR--VKLKIPAGTQ--------------- 301 (371)
T ss_pred EEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEE-ecC---------CC--EEEecCCCCc---------------
Confidence 455555555553 478999999999999998665543 133 55 4555555443
Q ss_pred cccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 88 QKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 88 ~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
+.=++.|+++.+|.. ..+|.||++.+..-..
T Consensus 302 ---~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ 335 (371)
T COG0484 302 ---TGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKN 335 (371)
T ss_pred ---cCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCC
Confidence 122556689999842 3689999998865443
No 236
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=39.38 E-value=26 Score=23.96 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=27.7
Q ss_pred CceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEE
Q psy16587 7 GLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLIL 46 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~ 46 (130)
.-+|.|.||. ...+...||++.+-|.+.-. +..+.|+
T Consensus 65 ~V~L~fsv~~--~~~RKe~iG~~sL~l~s~ge-eE~~HW~ 101 (103)
T cd08684 65 TVRLVFKIQT--QTPRKRTIGECSLSLRTLST-QETDHWL 101 (103)
T ss_pred ceEEEEEeec--cCCccceeeEEEeecccCCH-HHhhhhh
Confidence 3478999998 56689999999999987763 3344454
No 237
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=38.60 E-value=60 Score=23.65 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=32.7
Q ss_pred CceEEEEEEeCCCCC---------CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEec
Q psy16587 7 GLVVELQVFDYDWGL---------QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYP 69 (130)
Q Consensus 7 ~~~L~~~V~D~D~~~---------~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p 69 (130)
+..|.|.+|+..... .+..||.+.++|=+.+. .|.. |...|.|.-.+
T Consensus 81 earL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L~~--------G~~~L~lW~~~ 136 (171)
T cd04012 81 ESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VLRQ--------GSLLLGLWPPS 136 (171)
T ss_pred hHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchh--------hhcc--------CCEEEEeccCC
Confidence 456999999987654 45789999998876442 2333 77777776443
No 238
>PRK14286 chaperone protein DnaJ; Provisional
Probab=38.46 E-value=2.2e+02 Score=23.44 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=52.3
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCccc-EEEEEEEecCcchhhhccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGD-IYLSATLYPRSQEDRDQEASGTSES 85 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~-I~l~L~~~p~~~~~~~~~~~~~~~~ 85 (130)
.+.|.|-..+.|. .+|+.-.+.|+|.+.-++....+. .| + |. |.+.+ -|-..
T Consensus 254 ~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~-tl-d--------G~~i~v~i--p~g~~------------- 308 (372)
T PRK14286 254 YVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVP-TI-D--------GKKAKMKI--PEGTE------------- 308 (372)
T ss_pred EEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEe-CC-C--------CCEEEEEe--CCccC-------------
Confidence 4666777766664 578888999999988887755442 12 2 54 43333 23221
Q ss_pred cccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 86 YSQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 86 ~s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-..
T Consensus 309 -----~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~ 342 (372)
T PRK14286 309 -----SGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKK 342 (372)
T ss_pred -----CCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCC
Confidence 122556688888843 2689999999865443
No 239
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=37.42 E-value=37 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=23.5
Q ss_pred ceEEEEEEeCCCCCC----------CCcceEEEEeCccccCCc
Q psy16587 8 LVVELQVFDYDWGLQ----------DDFMGSASIDLTTLELGR 40 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~----------dD~iG~~~i~L~~v~~~~ 40 (130)
..+.|+||-.+..+. |=.||.+.|||.++-..+
T Consensus 92 ~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 92 AEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred ceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 467888887765443 347899999998876543
No 240
>PRK14278 chaperone protein DnaJ; Provisional
Probab=36.12 E-value=2.3e+02 Score=23.46 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|-..+.|. .+|+.-.+.|+|.+.-++....+. .|++ |.|.+.+ -|-..
T Consensus 247 ~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~-tld~--------~~i~v~i--p~g~~-------------- 301 (378)
T PRK14278 247 YVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVE-AILD--------GPSEITI--PPGTQ-------------- 301 (378)
T ss_pred EEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEe-cCCC--------CeEEEEe--CCCcC--------------
Confidence 4555555555553 578999999999988887655443 1333 6655544 23221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
.+-.+.|+++.+|.. ...|.||+|.+.--.
T Consensus 302 ----~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~ 334 (378)
T PRK14278 302 ----PGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPT 334 (378)
T ss_pred ----CCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCC
Confidence 122556688888842 268999999886554
No 241
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=34.88 E-value=2.4e+02 Score=22.55 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=51.0
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|-..+.|. .+|+.-.+.|+|.+.-.+...++ +.-+ |.| .+..-|-..
T Consensus 193 ~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i--~~~~--------g~v--~v~ip~g~~-------------- 246 (306)
T PRK10266 193 WLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTV--PTLK--------ESI--LLTIPPGSQ-------------- 246 (306)
T ss_pred EEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEe--eCCC--------ccE--EEEeCCCcC--------------
Confidence 4555555555553 46788888888888888765554 2222 654 344334221
Q ss_pred ccccceEEEEEeCCCCCC-CCCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPE-ENLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~-~~~~dpyVk~~L~~~~~ 121 (130)
.+-.+.|+++.+|. ...+|.||+|.+..-.+
T Consensus 247 ----~g~~~ri~g~G~p~~~~~GdL~v~~~v~~P~~ 278 (306)
T PRK10266 247 ----AGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPK 278 (306)
T ss_pred ----CCCEEEECCCCCCCCCCCCCEEEEEEEECCCC
Confidence 12255567888874 23689999999876644
No 242
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=34.19 E-value=2.4e+02 Score=26.36 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhccccccccccc
Q psy16587 10 VELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESYS 87 (130)
Q Consensus 10 L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s 87 (130)
+.|.+--...|. .+|++-.+.|+|...-++....+. .| + |.| .|...|-..
T Consensus 731 VvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIp-TL-D--------GrV--kLkIPpgTq--------------- 783 (871)
T TIGR03835 731 VVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVF-GP-N--------KLF--NVRIPGGIK--------------- 783 (871)
T ss_pred EEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEee-CC-C--------CCE--EEeeCCCCC---------------
Confidence 344445545553 578999999999988888655542 12 2 653 344434321
Q ss_pred cccceEEEEEeCCCCCCC--CCCCcEEEEEEccCccc
Q psy16587 88 QKCTDLILTLEDPNKPEE--NLGDIYLSATLYPRSQE 122 (130)
Q Consensus 88 ~~~~~l~V~l~a~nL~~~--~~~dpyVk~~L~~~~~~ 122 (130)
.+-.+.|+++++|.. ..+|.||+|.+..-.++
T Consensus 784 ---pGqvLRIkGKGMP~~~~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 784 ---VNDQVIFKDLGLTKTKYDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred ---CCcEEEECCCCCCCCCCCCCCEEEEEEEeecccc
Confidence 122556689999853 37899999988655443
No 243
>PRK14289 chaperone protein DnaJ; Provisional
Probab=34.08 E-value=2.4e+02 Score=23.30 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|.--+.|. .+|++-.+.|+|.+.-.+....+. .-+ |.| .+..-|-..
T Consensus 262 ~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~--~ld--------g~i--~v~ip~g~~-------------- 315 (386)
T PRK14289 262 LVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVP--TID--------GKA--KVKIEAGTQ-------------- 315 (386)
T ss_pred EEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEee--cCC--------ceE--EEEECCccC--------------
Confidence 3445555444443 568899999999888887655543 222 654 333333221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
.+-.+.|.++.+|.. ..+|.||+|.+.--.
T Consensus 316 ----~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~ 348 (386)
T PRK14289 316 ----PGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPE 348 (386)
T ss_pred ----CCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCC
Confidence 122556678888843 268999999887653
No 244
>PRK14277 chaperone protein DnaJ; Provisional
Probab=33.58 E-value=2.8e+02 Score=23.00 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|-..+.|. .+|+.-.+.|+|.+.-++....+. .| + |.+ .+..-|-..
T Consensus 263 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~-tl-d--------G~~--~v~ip~g~~-------------- 316 (386)
T PRK14277 263 YIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIP-TL-D--------GKV--KFTIPEGTQ-------------- 316 (386)
T ss_pred EEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEE-cC-C--------CCE--EEEECCCCC--------------
Confidence 4566666666663 578888999999988887655442 12 2 654 333333221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
.+-.+.|+++.+|.. ...|.||+|.+.--..
T Consensus 317 ----~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~ 350 (386)
T PRK14277 317 ----TGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKK 350 (386)
T ss_pred ----CCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence 122566788888842 2689999998865543
No 245
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=33.12 E-value=60 Score=23.70 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=23.7
Q ss_pred eEEEEE-eCCCCCCCCCCCcEEEEEEccCcc
Q psy16587 92 DLILTL-EDPNKPEENLGDIYLSATLYPRSQ 121 (130)
Q Consensus 92 ~l~V~l-~a~nL~~~~~~dpyVk~~L~~~~~ 121 (130)
.+.|.| .+.|++-...+|.||++.|.++++
T Consensus 9 ~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~ 39 (158)
T cd08398 9 NLRIKILCATYVNVNDIDKIYVRTGIYHGGE 39 (158)
T ss_pred CeEEEEEeeccCCCCCcCeEEEEEEEEECCE
Confidence 356666 888887667789999999998765
No 246
>PRK14284 chaperone protein DnaJ; Provisional
Probab=32.83 E-value=2.9e+02 Score=22.95 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|-..+.|. .+|+.-.+.|+|.+.-.+....+.. |.. .|.|.+.+ -|-..
T Consensus 262 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~t-ld~-------g~~i~v~I--p~g~~-------------- 317 (391)
T PRK14284 262 YVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPT-LLK-------EGTCRLTI--PEGIQ-------------- 317 (391)
T ss_pred EEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEee-cCC-------CcEEEEEE--CCccC--------------
Confidence 4555666666664 5789999999999999887665532 321 15544443 23221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-..
T Consensus 318 ----~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~ 351 (391)
T PRK14284 318 ----SGTILKVRGQGFPNVHGKGRGDLLVRISVETPQN 351 (391)
T ss_pred ----CCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCC
Confidence 122555678888843 2689999999876543
No 247
>PRK14276 chaperone protein DnaJ; Provisional
Probab=32.09 E-value=2.9e+02 Score=22.81 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=53.3
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|-....|. .+|+.-.+.|+|.+.-.+....+. .-+ |.|.| ..-|-..
T Consensus 254 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~--tld--------g~i~v--~ip~g~~-------------- 307 (380)
T PRK14276 254 YVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVP--TVH--------GDVEL--KIPAGTQ-------------- 307 (380)
T ss_pred EEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEE--cCC--------CcEEE--EECCCCC--------------
Confidence 5777888777664 578998999999988888755542 222 66433 3334221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-.
T Consensus 308 ----~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~ 340 (380)
T PRK14276 308 ----TGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPT 340 (380)
T ss_pred ----CCCEEEECCCCcCCCCCCCCCCEEEEEEEECCC
Confidence 122455678888842 268999999886543
No 248
>PLN02223 phosphoinositide phospholipase C
Probab=31.88 E-value=91 Score=27.49 Aligned_cols=29 Identities=10% Similarity=0.026 Sum_probs=20.8
Q ss_pred eEEEEE-eCCCCCC--------CCCCCcEEEEEEccCc
Q psy16587 92 DLILTL-EDPNKPE--------ENLGDIYLSATLYPRS 120 (130)
Q Consensus 92 ~l~V~l-~a~nL~~--------~~~~dpyVk~~L~~~~ 120 (130)
.|.|.| .|++++. ...+||||++.+..-.
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp 447 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVP 447 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeecc
Confidence 357777 9998751 2367999999997543
No 249
>PRK14294 chaperone protein DnaJ; Provisional
Probab=31.23 E-value=3e+02 Score=22.61 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|-..+.|. .+|+.-.+.|+|.+.-.+....+. .| + |.+ .+..-|-..
T Consensus 248 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~-tl-d--------G~~--~v~ip~g~~-------------- 301 (366)
T PRK14294 248 YVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVP-TL-E--------GER--ELKIPKGTQ-------------- 301 (366)
T ss_pred EEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEE-CC-C--------CcE--EEEECCCcC--------------
Confidence 4677777777664 678999999999998888655442 12 2 654 333333221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-.
T Consensus 302 ----~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~ 334 (366)
T PRK14294 302 ----PGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPT 334 (366)
T ss_pred ----CCCEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 122556678888743 268999999987553
No 250
>PRK14287 chaperone protein DnaJ; Provisional
Probab=29.93 E-value=3.2e+02 Score=22.55 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|--...|. .+|+.-.+.|+|.+.-.+....+ +.-+ |.|.+.+ -|-..
T Consensus 246 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i--~~ld--------g~i~v~i--p~g~~-------------- 299 (371)
T PRK14287 246 YVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEV--PTLN--------GKVKLKI--PAGTQ-------------- 299 (371)
T ss_pred EEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEE--EcCC--------CCEEEEE--CCCcc--------------
Confidence 4556665555653 67899999999998888875554 2222 6654433 34221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
.+-.+.|+++.+|.. ..+|.||+|.+..-..
T Consensus 300 ----~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ 333 (371)
T PRK14287 300 ----TGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKN 333 (371)
T ss_pred ----CCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCC
Confidence 122555678888843 2689999998876543
No 251
>PRK14293 chaperone protein DnaJ; Provisional
Probab=28.69 E-value=3.3e+02 Score=22.39 Aligned_cols=83 Identities=20% Similarity=0.190 Sum_probs=52.5
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|---+.|. .+|++-.+.|+|.+.-.+....+. .-+ |.+ .+..-|-..
T Consensus 251 ~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~--~ld--------G~~--~i~ip~~~~-------------- 304 (374)
T PRK14293 251 YVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVD--TVD--------GPV--ELTIPAGTQ-------------- 304 (374)
T ss_pred EEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEec--CCC--------CCE--EEEeCCCCC--------------
Confidence 4556666655554 678999999999988888755542 222 654 333333221
Q ss_pred ccccceEEEEEeCCCCCCC----CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE----NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~----~~~dpyVk~~L~~~~~ 121 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-..
T Consensus 305 ----~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~ 339 (374)
T PRK14293 305 ----PNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTR 339 (374)
T ss_pred ----CCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCC
Confidence 022556678889842 2589999998876543
No 252
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=28.62 E-value=79 Score=23.46 Aligned_cols=31 Identities=6% Similarity=0.001 Sum_probs=21.4
Q ss_pred CCCCceEEEEEEeCCCCCCCCcceEEEEeCc
Q psy16587 4 TTSGLVVELQVFDYDWGLQDDFMGSASIDLT 34 (130)
Q Consensus 4 ~~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~ 34 (130)
+.+...|.+.++|.|..++.-+|-.+.+.++
T Consensus 107 ~~~d~~l~v~L~dv~pdG~~~~it~G~l~~s 137 (218)
T PF08530_consen 107 DAPDADLFVRLSDVDPDGTSTLITRGWLRAS 137 (218)
T ss_dssp SSSS-EEEEEEEEEETTSSEEEEEEEEEEGG
T ss_pred cCCCcEEEEEEEEeCCCCCEEEccceEEEcc
Confidence 4455678888888887766667777777664
No 253
>PF15146 FANCAA: Fanconi anemia-associated
Probab=28.02 E-value=2.3e+02 Score=24.28 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=36.1
Q ss_pred CCceEEEEEEeCCCCCCCCcce---EEEEeCccccCCceeEEEEecCCCC
Q psy16587 6 SGLVVELQVFDYDWGLQDDFMG---SASIDLTTLELGRCTDLILTLEDPN 52 (130)
Q Consensus 6 ~~~~L~~~V~D~D~~~~dD~iG---~~~i~L~~v~~~~~~~~~~~L~~~~ 52 (130)
.+=+|-|+|+-.-....-|-.| .-++|+.++.+++..|+.++|.+..
T Consensus 92 ~GWtLCiqv~~~s~~~~~~~~~SattytfPv~~L~PG~~~EVtLPLg~~~ 141 (435)
T PF15146_consen 92 RGWTLCIQVLSSSCALDTDSASSATTYTFPVDNLGPGERREVTLPLGPAE 141 (435)
T ss_pred CCceEEEEeccCCCCcccCCCCCceeEEEEcccCCCCceeEEEEecCccc
Confidence 4556778888766554555556 5689999999999999999997643
No 254
>PRK10767 chaperone protein DnaJ; Provisional
Probab=27.97 E-value=3.4e+02 Score=22.25 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=52.4
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|-..+.|. .+|+.-.+.|+|.+.-.+....+. .| + |.| .+..-|-..
T Consensus 246 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~-~l-d--------G~i--~v~ip~g~~-------------- 299 (371)
T PRK10767 246 YVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVP-TL-D--------GRV--KLKIPEGTQ-------------- 299 (371)
T ss_pred EEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEe-cC-C--------CcE--EEEeCCCCC--------------
Confidence 4566666666663 578999999999988887755542 12 2 643 444444221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-.
T Consensus 300 ----~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~ 332 (371)
T PRK10767 300 ----TGKLFRLRGKGVKSVRSGARGDLYCQVVVETPV 332 (371)
T ss_pred ----CCCEEEECCCCcCCCCCCCCCCEEEEEEEECCC
Confidence 122556678888842 368999999887654
No 255
>KOG1264|consensus
Probab=27.33 E-value=1e+02 Score=29.07 Aligned_cols=37 Identities=5% Similarity=0.124 Sum_probs=28.7
Q ss_pred ceEEEEE-eCCCCCCCC--CCCcEEEEEEccCccccccee
Q psy16587 91 TDLILTL-EDPNKPEEN--LGDIYLSATLYPRSQEDRDQN 127 (130)
Q Consensus 91 ~~l~V~l-~a~nL~~~~--~~dpyVk~~L~~~~~~s~~~~ 127 (130)
.+|+|.+ .||+||..+ ..-|||.+.+......+++++
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~ 1104 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFK 1104 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceE
Confidence 3567777 999999766 567999999987777666644
No 256
>KOG4027|consensus
Probab=27.03 E-value=81 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCCCCCCcceEEEEeCc
Q psy16587 9 VVELQVFDYDWGLQDDFMGSASIDLT 34 (130)
Q Consensus 9 ~L~~~V~D~D~~~~dD~iG~~~i~L~ 34 (130)
.|.+.||..|.+++|-..|-+.|++-
T Consensus 84 qivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 84 QIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred eEEEEEecCCcCCcceeeeeeeEecC
Confidence 48899999999999999999988764
No 257
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=26.51 E-value=1.7e+02 Score=19.99 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 5 ~~~~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
|.++.|+|.||=.|.- ..=|-..+-|.+. ...+.++|++ .|.+...++|
T Consensus 44 dRsRELEI~VywrD~R---slCav~~lrLEd~----~~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 44 ERSRELEIAVYWRDWR---SLCAVKFLKLEDE----RHEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred ecccEEEEEEEEecch---hhhhheeeEhhhh----cccceecccc-------ccEEEEEEEe
Confidence 4678899999998863 3445667777762 1233444443 3888888888
No 258
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=24.87 E-value=2.1e+02 Score=19.47 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=33.2
Q ss_pred ceEEEEEEeCCCCCCCCcceEEEEeCccccCCc--eeEEEEecCCCCCCCCCcccEEEEEEE
Q psy16587 8 LVVELQVFDYDWGLQDDFMGSASIDLTTLELGR--CTDLILTLEDPNKPEENLGDIYLSATL 67 (130)
Q Consensus 8 ~~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~~--~~~~~~~L~~~~~~~~~~G~I~l~L~~ 67 (130)
..+.++++--= +.....+|.+.|+|..+-... .......|-+... +..|.|...+++
T Consensus 46 ~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~~~--~~~g~l~y~~rl 104 (107)
T PF11618_consen 46 GSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVGVSG--EDFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BSSS---TSEEEEEEEEE
T ss_pred CCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEeccCC--CeEEEEEEEEEe
Confidence 45777777754 556889999999999887333 3455556655443 577888777764
No 259
>PRK14279 chaperone protein DnaJ; Provisional
Probab=23.86 E-value=4.3e+02 Score=22.00 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|--...|. .+|+.-.+.|+|.+.-++....+. .-+ |.|.| ..-|-..
T Consensus 277 ~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~--~ld--------g~i~v--~Ip~g~~-------------- 330 (392)
T PRK14279 277 YVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVP--TLD--------GPVGV--KVPAGTA-------------- 330 (392)
T ss_pred EEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEE--cCC--------ceEEE--EECCCCC--------------
Confidence 4556666656653 678999999999998888655542 222 65433 3333221
Q ss_pred ccccceEEEEEeCCCCCCC--CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE--NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~--~~~dpyVk~~L~~~~~ 121 (130)
..-.+.|+++.+|.. ...|.||+|.+.--..
T Consensus 331 ----~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~ 363 (392)
T PRK14279 331 ----DGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPN 363 (392)
T ss_pred ----CCCEEEECCCCCCCCCCCCCCEEEEEEEECCCC
Confidence 122556678888853 2689999999876544
No 260
>PRK14290 chaperone protein DnaJ; Provisional
Probab=22.66 E-value=4.3e+02 Score=21.64 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=51.0
Q ss_pred EEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhccccccccccc
Q psy16587 10 VELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESYS 87 (130)
Q Consensus 10 L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~s 87 (130)
+.|.|-..+.|. .+|+.-.+.|+|.+.-.+....+. +-+ |.|.+.+ -|-..
T Consensus 255 v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~--~~~--------g~i~V~I--p~g~~--------------- 307 (365)
T PRK14290 255 VVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK--LFR--------EKYNLKI--PEGTQ--------------- 307 (365)
T ss_pred EEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEE--cCC--------ceEEEEE--CCccC---------------
Confidence 555666655653 578999999999998888765543 322 6544433 23221
Q ss_pred cccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 88 QKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 88 ~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-.
T Consensus 308 ---~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~ 340 (365)
T PRK14290 308 ---PGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPK 340 (365)
T ss_pred ---CCcEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 012455577777732 268999999987554
No 261
>PRK14280 chaperone protein DnaJ; Provisional
Probab=21.92 E-value=4.6e+02 Score=21.63 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=52.9
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.+.|.|-....|. .+|+.-.+.|+|.+.-++....+. .| + |.+. +..-|-..
T Consensus 251 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~-tl-d--------g~i~--v~ip~g~~-------------- 304 (376)
T PRK14280 251 YVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVP-TL-H--------GKVK--LKIPAGTQ-------------- 304 (376)
T ss_pred EEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEe-cC-C--------ceEE--EEECCCCC--------------
Confidence 5667777777764 689999999999998887655432 12 2 6543 33333221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRS 120 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~ 120 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-.
T Consensus 305 ----~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~ 337 (376)
T PRK14280 305 ----TGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPT 337 (376)
T ss_pred ----CCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 122455678888842 268999999887543
No 262
>PRK14298 chaperone protein DnaJ; Provisional
Probab=21.37 E-value=4.7e+02 Score=21.60 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.|-..+.|. .+|+.=.+.|+|.+.-++....+. .-+ |.|.+.+ -|-..
T Consensus 249 ~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~--tld--------G~i~v~i--p~g~~-------------- 302 (377)
T PRK14298 249 YIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP--TLY--------GKVKMNI--PPGTQ-------------- 302 (377)
T ss_pred EEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEe--cCC--------CCEEEEe--CCCcc--------------
Confidence 4566666666664 578999999999999888755442 222 6654433 33221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
..-.+.|+++.+|.. ..+|.||+|.+..-..
T Consensus 303 ----~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ 336 (377)
T PRK14298 303 ----THSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTK 336 (377)
T ss_pred ----cCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
Confidence 112555688888842 2689999998876543
No 263
>KOG0241|consensus
Probab=21.37 E-value=1.4e+02 Score=28.93 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCCCCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhc-c--ccccccccccccceE--
Q psy16587 19 WGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQ-E--ASGTSESYSQKCTDL-- 93 (130)
Q Consensus 19 ~~~~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~-~--~~~~~~~~s~~~~~l-- 93 (130)
.-..|.+||-|.|-|.-+.-.-..++-+++-... +|-+|++|+.+.-.......+.. . .-..+.........|
T Consensus 766 sQEnhnLiGVANvFLE~LF~DvkL~Y~vPIIsQq--GEVAGRLhVev~Rv~gq~~~~~~ggdev~e~~~~~~~~~~~ltC 843 (1714)
T KOG0241|consen 766 SQENHNLIGVANVFLEVLFHDVKLQYAVPIISQQ--GEVAGRLHVEVMRVTGQVPERVVGGDEVVESSGEIIHRVKKLTC 843 (1714)
T ss_pred ccccccchhhHHHHHHHHHhhheeccccceeccc--ccccceeEEEEEEeccccchhhccccccccCCCccccccceEEE
Confidence 3357789999988887666544445555554322 47889999999755543222111 0 001111112222344
Q ss_pred EEEE-eCCCCCCCCCCCcEEEEEEc
Q psy16587 94 ILTL-EDPNKPEENLGDIYLSATLY 117 (130)
Q Consensus 94 ~V~l-~a~nL~~~~~~dpyVk~~L~ 117 (130)
-|.| +|.+||..-..=.||+.+..
T Consensus 844 rVkIk~AtGLP~~LSnFVFCqYtFw 868 (1714)
T KOG0241|consen 844 RVKIKEATGLPLNLSNFVFCQYTFW 868 (1714)
T ss_pred EEEEeeccCCcccccceEEEEeeec
Confidence 7888 99999954333345555543
No 264
>PRK14281 chaperone protein DnaJ; Provisional
Probab=20.66 E-value=5e+02 Score=21.60 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=51.0
Q ss_pred eEEEEEEeCCCCC--CCCcceEEEEeCccccCCceeEEEEecCCCCCCCCCcccEEEEEEEecCcchhhhcccccccccc
Q psy16587 9 VVELQVFDYDWGL--QDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSESY 86 (130)
Q Consensus 9 ~L~~~V~D~D~~~--~dD~iG~~~i~L~~v~~~~~~~~~~~L~~~~~~~~~~G~I~l~L~~~p~~~~~~~~~~~~~~~~~ 86 (130)
.++|.+-..+.|. .+|+.-.+.|+|.+.-.+....+.. | + |.|.+.+ -|-..
T Consensus 270 ~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~t-l-d--------g~i~v~i--p~g~~-------------- 323 (397)
T PRK14281 270 IVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPT-L-D--------GAVKLTI--PAGTQ-------------- 323 (397)
T ss_pred EEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeec-C-C--------ccEEEEe--CCccC--------------
Confidence 4455555555553 5788889999998888876554431 2 2 6543333 33221
Q ss_pred ccccceEEEEEeCCCCCCC---CCCCcEEEEEEccCcc
Q psy16587 87 SQKCTDLILTLEDPNKPEE---NLGDIYLSATLYPRSQ 121 (130)
Q Consensus 87 s~~~~~l~V~l~a~nL~~~---~~~dpyVk~~L~~~~~ 121 (130)
.+-.+.|+++.+|.. ..+|.||+|.+.--..
T Consensus 324 ----~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~ 357 (397)
T PRK14281 324 ----PETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKE 357 (397)
T ss_pred ----CCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCC
Confidence 123556688888842 2689999999865543
No 265
>PF09922 DUF2154: Cell wall-active antibiotics response protein (DUF2154); InterPro: IPR024425 This domain is found in various prokaryotic proteins, including cell wall-active antibiotic response proteins.
Probab=20.37 E-value=1.7e+02 Score=19.68 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCCCCCCcceEEEEeCccccCC
Q psy16587 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELG 39 (130)
Q Consensus 9 ~L~~~V~D~D~~~~dD~iG~~~i~L~~v~~~ 39 (130)
......+++....=.-.+|.+.|+|++..+.
T Consensus 7 ~~~~~~~~~~~~~i~~~~G~~~lDl~~a~l~ 37 (115)
T PF09922_consen 7 TQYINSQNLEDINIQAGFGDVTLDLSQAQLP 37 (115)
T ss_pred EEeecccccCccEEEEEECCEEEECCCCCcC
Confidence 4455556665555667899999999999874
Done!