RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16587
(130 letters)
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 51.1 bits (123), Expect = 2e-09
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67
V+E+ VFD D DF+G +I L ++ G+ +L +D + G IYL L
Sbjct: 74 VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ--AFKGVIYLEMDL 130
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 51.3 bits (123), Expect = 2e-09
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP--EENLG 59
+ + V D++ Q+ +G+A++ L L + L L ++
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123
Query: 60 DIYLSATLYPRSQE 73
I L P S
Sbjct: 124 TIDLVIGYDPPSGP 137
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 51.3 bits (123), Expect = 3e-09
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLI------LTLEDPNKPEENLGDIY 62
+ +VFD + +DDF+G + L L L + G +
Sbjct: 87 RLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLR 146
Query: 63 LSATLYP 69
L T P
Sbjct: 147 LKMTYLP 153
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 51.0 bits (122), Expect = 3e-09
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGR------CTDLILTLEDPNKPEENLGDIY 62
+ +VFD + +DDF+G + L L T L + G +
Sbjct: 75 RILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLR 134
Query: 63 LSATLYPRSQED 74
L T P++ +
Sbjct: 135 LKMTYLPKNGSE 146
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 50.0 bits (120), Expect = 5e-09
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68
++ ++FD D G +DD +G A+I L + + + T + K EE G+I+++ +
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG--SIPPTAYNVVKDEEYKGEIWVALSFK 129
Query: 69 PRSQED 74
P
Sbjct: 130 PSGPSS 135
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 47.7 bits (114), Expect = 3e-08
Identities = 7/47 (14%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPE 55
V+E+ + D ++ D+ +G+A+ ++++++G ++ +
Sbjct: 71 VLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMV 116
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 46.4 bits (110), Expect = 2e-07
Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTL---ELGRCTDLILTLE--DPNKPEENLG 59
T + +V+ + D +G+A++D+ + ++++TL+ +P E +G
Sbjct: 92 TPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG 151
Query: 60 DIYLS 64
D+ +
Sbjct: 152 DLSIC 156
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 45.2 bits (107), Expect = 9e-07
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPE-ENLGD 60
+G + + V+D+D + D +G + + T++ G T+ L+ K E E LGD
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGD 138
Query: 61 IYLSATLYPRSQE 73
I S P + +
Sbjct: 139 ICFSLRYVPTAGK 151
Score = 29.4 bits (66), Expect = 0.32
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
E + V + V DYD ++D +G + +
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL 250
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 44.5 bits (104), Expect = 2e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 3 ETTSGLVVELQVFDYDWGLQDDFMGSASIDLTT 35
++G + +QV+D D+G DD +GS +
Sbjct: 450 LLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS 482
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 42.9 bits (101), Expect = 3e-06
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 1 MPETTSGLVVELQVFDYDWGL-----------QDDFMGSASIDLTTLELGRCTDLILTLE 49
S ++++V D D + DDF+G I++ L D+ L+
Sbjct: 70 FECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYNLD 127
Query: 50 DPNKPEENLGDIYLSATL 67
G I L ++
Sbjct: 128 KRTDKSAVSGAIRLHISV 145
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 41.1 bits (96), Expect = 2e-05
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLS 64
T G +EL VF D F+ + ++ L +PE G +++
Sbjct: 96 TDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE---GKVFVV 152
Query: 65 ATL 67
TL
Sbjct: 153 ITL 155
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 40.6 bits (95), Expect = 2e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 5 TSGLVVELQVFDYDWGLQDDFMGSASIDLTTL--ELGRCTDLILTLEDPNKPEENLGDIY 62
+G +EL VF DDF+ + +I L R + + LE PE G +Y
Sbjct: 74 CNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----PE---GKVY 126
Query: 63 LSATL 67
+ L
Sbjct: 127 VIIDL 131
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 40.4 bits (95), Expect = 2e-05
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 9 VVELQVFDYDWGLQDD---FMGSASI---DLTTLELGRCTDLILTLEDPNKPEENLGDIY 62
+ + V+++ + F+G + ++ L+ L L +P+ + G I
Sbjct: 67 SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIV 126
Query: 63 LS 64
+S
Sbjct: 127 VS 128
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 40.1 bits (94), Expect = 4e-05
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 1 MPETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
+ E+ + ++++D+D ++DFMGS S ++ L+
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 39.7 bits (93), Expect = 4e-05
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49
+ + V D D ++F+G L L+ + + + LE
Sbjct: 99 TLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 39.3 bits (92), Expect = 6e-05
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEEN 57
+ ++ V+ + ++ F+G A I + + +L + D L L E
Sbjct: 86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 39.4 bits (92), Expect = 9e-05
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASID--LTTLELGRCTDLILTLEDPNKPEENLG 59
+ + V+D+D + D +G +D L E L + + + +LG
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG 139
Query: 60 DIYLSATLYPRSQE 73
++ S P +
Sbjct: 140 ELNFSLCYLPTAGL 153
Score = 30.2 bits (68), Expect = 0.13
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTL 36
PE+ + + + V DYD ++ +G +
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 248
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 37.8 bits (88), Expect = 2e-04
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDP 51
+ + V+D+D + D +G + + T++ G T+ L+
Sbjct: 109 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49
+ + V+D+D + D +G + + T++ G T+ L+
Sbjct: 101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 37.4 bits (87), Expect = 3e-04
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP 54
+ L V D+D + +G S+ L ++L + L
Sbjct: 100 TLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPS 145
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 36.5 bits (85), Expect = 5e-04
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 1 MPETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLEL 38
+ + + ++++D+D ++DFMGS S ++ L
Sbjct: 76 LKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 113
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 36.5 bits (85), Expect = 6e-04
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK 53
++ LQV DYD ++D +G SI L ++L + L+
Sbjct: 94 ILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP 138
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 36.2 bits (84), Expect = 6e-04
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCT 42
+ + +D +DD +G I L+ +EL
Sbjct: 91 ALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 35.8 bits (83), Expect = 9e-04
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
E + L + D + G + L +
Sbjct: 84 EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 34.7 bits (80), Expect = 0.003
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK 53
+E+ V+DYD +DF+G IDL++ T L++ +
Sbjct: 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE 141
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 33.8 bits (78), Expect = 0.004
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
ET ++L V + ++ F+G ++ L L +
Sbjct: 82 KETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK 120
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 31.5 bits (72), Expect = 0.035
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
E + + V D D ++D +G + +
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV 116
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 31.6 bits (72), Expect = 0.038
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
+++ V+DYD G +D++G + ++
Sbjct: 107 LDISVWDYDIGKSNDYIGGCQLGISAKGERL 137
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 31.2 bits (71), Expect = 0.046
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 9 VVELQVFDYDWGLQDD--FMGSASIDLTTLELGRCTDLILTLEDPNKPEE 56
+++ V + L D +G + L + EL + L + + P
Sbjct: 92 TLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPSS 141
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 30.7 bits (70), Expect = 0.066
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 9 VVELQVFDYD--WGLQDDFMGSASIDLTTLELGR 40
++E+ ++D + +F+G I+L T L
Sbjct: 88 MLEITLWDQARVREEESEFLGEILIELETALLDD 121
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 30.9 bits (70), Expect = 0.072
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 11 ELQVFDYDWGLQDDFMGSASIDLTTLELG 39
+ V D ++ +G A I L +
Sbjct: 115 RVDVCTTDRSHLEECLGGAQISLAEVCRS 143
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 30.0 bits (68), Expect = 0.11
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 9 VVELQVFDYD--WGLQDDFMGSASIDLTTLELGR 40
++E+ ++D + +F+G I+L T L
Sbjct: 91 MLEITLWDQARVREEESEFLGEILIELETALLDD 124
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 30.1 bits (68), Expect = 0.14
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 14 VFDYDWGLQDDFMGSASIDLTTLELGRCTD 43
DY FMG A I L L+L
Sbjct: 103 WGDYGRMDHKCFMGVAQILLEELDLSSMVI 132
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 29.7 bits (67), Expect = 0.15
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
V + V DYD ++D +G + +
Sbjct: 95 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL 125
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 29.6 bits (67), Expect = 0.16
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGR 40
E+ + VE V D + G +++ +G + T G
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG 130
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 29.3 bits (66), Expect = 0.22
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 1 MPETTSGLVVELQVFDYD-WGLQDDFMGSASIDLTTLELGR 40
+ E + + V++ Q +G S + +L
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD 126
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 29.9 bits (66), Expect = 0.26
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68
V+E+ + D ++ + D+ +G+A+ ++++++G ++ + + S
Sbjct: 86 VLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDL 144
Query: 69 PRSQEDRDQEAS 80
S DQE +
Sbjct: 145 RFSMALCDQEKT 156
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 27.6 bits (60), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELG 39
+V V DYD ++DF+G ++I +L+ G
Sbjct: 567 LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG 597
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.1
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 17/103 (16%)
Query: 28 SASID-LTTLELGRC-TDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQEASGTSES 85
+S++ L E + L + + P L + ++ +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL------SLIWFDVIKS-------DVMV 406
Query: 86 YSQKCTDLILTLEDPNKPEENLGDIYLSATLYPRSQEDRDQNR 128
K L + P + ++ IYL L + + + +R
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENEYALHR 447
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 25.7 bits (56), Expect = 3.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNK 53
V+E+Q+F+Y + +G+ + L + ++ TL D N
Sbjct: 81 VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN 125
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A
{Saccharomyces cerevisiae}
Length = 1030
Score = 26.0 bits (57), Expect = 5.5
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 14 VFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQE 73
DYDW L+ + + + D K + +L DIY L
Sbjct: 23 GHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNLMT 82
Query: 74 DRDQE 78
+ D +
Sbjct: 83 EGDMK 87
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A
{Saccharomyces cerevisiae}
Length = 1219
Score = 25.6 bits (56), Expect = 6.0
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 15 FDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLYPRSQED 74
DYDW L+ + + + D K + +L DIY L +
Sbjct: 21 HDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNLMTE 80
Query: 75 RDQE 78
D +
Sbjct: 81 GDMK 84
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding,
neurotransmitter release, RIM, MUNC13 domains,
exocytosis, metal-binding; 1.44A {Rattus norvegicus}
SCOP: b.7.1.1
Length = 131
Score = 24.9 bits (54), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 6 SGLVVELQVFDYDWGLQDDFMGSASIDLTTL 36
GL VE V++ + D +G+ I L T+
Sbjct: 61 LGLTVE--VWNKG-LIWDTMVGTVWIPLRTI 88
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA,
unknown function, structural genomics, PSI-2, protein
structure initiative; 2.10A {Vibrio cholerae}
Length = 126
Score = 25.1 bits (54), Expect = 6.6
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE--DPNKPEENLGDIYLSATL 67
V L ++ WG + ++ D + +G T E DP EE L DI + ++
Sbjct: 12 VNLNIYSPRWGRHETYIVELHKDYMEISMGAVTIKATYSENQDPEWSEETLQDIMNNDSV 71
Query: 68 YP 69
YP
Sbjct: 72 YP 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.132 0.376
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,863,599
Number of extensions: 94552
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 47
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (23.8 bits)