RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16587
(130 letters)
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 44.4 bits (104), Expect = 2e-07
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 11 ELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATL 67
E+ VFD D DF+G +I L ++ G+ +L +D + + G IYL L
Sbjct: 69 EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK--GVIYLEMDL 123
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 41.3 bits (96), Expect = 3e-06
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLEL-GRCTDLILTLEDPNKPEENLGDIYLSATL 67
++ ++FD D G +DD +G A+I L + + G + K EE G+I+++ +
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV---KDEEYKGEIWVALSF 128
Query: 68 YPRSQED 74
P
Sbjct: 129 KPSGPSS 135
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 40.1 bits (93), Expect = 9e-06
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP 54
L + + +D +DD +G I L+ +EL +++ E + P
Sbjct: 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE-GKMLMNREIISGP 135
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 39.7 bits (92), Expect = 1e-05
Identities = 6/46 (13%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPE 55
+E+ + D ++ D+ +G+A+ ++++++G ++ +
Sbjct: 72 LEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMV 116
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 38.7 bits (89), Expect = 4e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLED 50
+E+ V+DYD +DF+G IDL++ T L++
Sbjct: 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 38.2 bits (88), Expect = 5e-05
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLE 49
+ + V+D+D + D +G + + T++ G T+ L+
Sbjct: 102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 37.4 bits (86), Expect = 9e-05
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 11 ELQVFDYDWGLQDDFMGSASIDLTTL---ELGRCTDLILTLE--DPNKPEENLGDIYLS 64
+V+ + D +G+A++D+ + ++++TL+ +P E +GD+ +
Sbjct: 68 HFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSIC 126
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 34.3 bits (78), Expect = 0.001
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 1 MPETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCT 42
+ E+ + ++++D+D ++DFMGS S ++ L+
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 116
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 32.9 bits (74), Expect = 0.005
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP 54
PE+ + + + V DYD ++ +G + + L +P KP
Sbjct: 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKP 134
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 32.0 bits (72), Expect = 0.008
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 10 VELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEENLGDIYLSATLY 68
V V DYD ++DF+G ++I +L+ G + L N GD + SATL+
Sbjct: 75 VRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRH---VHLLSKN------GDQHPSATLF 124
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 31.6 bits (71), Expect = 0.012
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP 54
E+ + VE V D + G +++ +G + T G + P +
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG-GHWKEICDFPRRQ 128
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 30.8 bits (69), Expect = 0.020
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 2 PETTSGLVVELQVFDYD--WGLQDDFMGSASIDLTTLELG 39
++E+ ++D + +F+G I+L T L
Sbjct: 77 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 30.6 bits (68), Expect = 0.034
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKPEE 56
E + V + V DYD ++D +G + + + L +P +P
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM-LANPRRPIA 140
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 28.0 bits (61), Expect = 0.22
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP 54
+ L + D + G + L + L+ + P
Sbjct: 91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK-TSGP 135
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 25.3 bits (54), Expect = 2.2
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 9 VVELQVFDYDWGLQDDFMGSASIDLTT--LELGRCTDLILTLED 50
+ V+D+D + D +G +D E L + +
Sbjct: 85 KLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 24.4 bits (52), Expect = 3.7
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 2 PETTSGLVVELQVFDYDWGLQDDFMGSASIDLTTLELGRCTDLILTLEDPNKP 54
+ +++ V+DYD G +D++G + ++ L++ +K
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC-LKNKDKK 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.132 0.376
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,098
Number of extensions: 17486
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 17
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.8 bits)