BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16588
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
EA +G ++ + A+ +Y++ L++ NAE + NL + YD +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
+++AL L + N A+ WYN+ + D AI+ AL +D ++ ++ NL + +
Sbjct: 66 YQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
Query: 270 EG 271
+G
Sbjct: 124 QG 125
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + YD + +++AL L + N A+ WYN+ + D AI+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
AL +D ++ + NL ++G + A Y Q A P
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
N+A+ WYN+ + D AI+ AL +D ++ + NL ++G + A Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
Q A P E YN GD E+ +K+L+L P ++
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
NL + + +++YY+ L+ D EA +G ++ + A+ +Y++ L++
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
NAE + NL + YD + +++AL L N
Sbjct: 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
NL + + +++YY+ L+ D EA +G ++ + A+ +Y++ L++
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Query: 183 GLYNAELFNNLA 194
NAE NL
Sbjct: 107 DPNNAEAKQNLG 118
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + YD + +++AL L + +A+ WYN+ + D AI+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 58
Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306
AL +D + NL ++G + A Y Q A P E YN GD
Sbjct: 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Query: 307 LQESYNIVKKSLDLHP 322
E+ +K+L+L P
Sbjct: 119 YDEAIEYYQKALELDP 134
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
NL + + +++YY+ L+ D EA +G ++ + A+ +Y++ L++
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
+AE + NL + YD + +++AL L+ +A+ WYN+ + D A
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 243 IQCLHLALSID 253
I+ AL +D
Sbjct: 123 IEYYQKALELD 133
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
EA +G ++ + A+ +Y++ L++ +AE + NL + YD + +++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
L L+ +A+ WYN+ + D AI+ AL +D + NL ++G
Sbjct: 62 LE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119
Query: 274 ERASTYLQAAAASSP 288
+ A Y Q A P
Sbjct: 120 DEAIEYYQKALELDP 134
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%)
Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282
A+ WYN+ + D AI+ AL +D + NL ++G + A Y Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
A P E YN GD E+ +K+L+L P + +W
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)
Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
P V+ NL +F + +++ +++ + D ++A +G + A+
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAADVWYNISHVAI 234
Y R L + +A + NLA C +Y Q D+ + + RA+ L + D + N+++
Sbjct: 226 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 282
Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
A C + AL + +H S NNLA ++ +G+IE A + A P H
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
N A + G LQE+ K+++ + P
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 196 CCFYSQ-QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL---AIQCLHLALS 251
C F +Q + + + FE+A++L + N D + N+ +V + + R+ A+ ALS
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNV---LKEARIFDRAVAAYLRALS 231
Query: 252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESY 311
+ +H + NLA + +G I+ A + A P+ + + N A G + E+
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 312 NIVKKSLDLHPGHSYSWDILRKLEQ 336
+ +L L P H+ S + L +++
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKR 316
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
EA +G ++ + A+ +Y++ L++ NAE + NL + YD +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
+++AL L N A+ WYN+ + D AI+ AL + ++ ++ NL + +
Sbjct: 66 YQKALELYPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQK 123
Query: 270 EG 271
+G
Sbjct: 124 QG 125
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + YD + +++AL L N A+ WYN+ + D AI+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN--AEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
AL + ++ + NL ++G + A Y Q A
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
N+A+ WYN+ + D AI+ AL + ++ + NL ++G + A Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
Q A P E YN GD E+ +K+L+L+P ++
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
NL + + +++YY+ L+ EA +G ++ + A+ +Y++ L++
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
NAE + NL + YD + +++AL L N
Sbjct: 73 YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLH 321
NL ++G + A Y Q A P E YN GD E+ +K+L+L+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 322 PGHSYSW 328
P ++ +W
Sbjct: 74 PNNAEAW 80
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
E AL FY + L++ A + + Y FE+AL + EN D++Y +
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENG-DLFYML 131
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
V + + +LA+ L A+ ++ + ++ + A EG ++ A + A P
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324
+ YN V + +++ ++ K++D+ P H
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
N+A+ W N+ + D + AI+ AL +D ++ + NL ++G ++A Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
Q A P + Y + GD Q++ +K+L+L P ++
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + Y + +++AL L + N A WYN+ + D + AI+
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALEL--DPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 247 HLALSIDSSH 256
AL +D ++
Sbjct: 67 QKALELDPNN 76
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 36/148 (24%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
NL + + +++YY+ L+ D P A +Y
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELD-------------------PNNASAWY------- 47
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
NL + Y + +++AL L+ N A WY + D + AI
Sbjct: 48 --------NLGNAYYKQGDYQKAIEYYQKALE--LDPNNAKAWYRRGNAYYKQGDYQKAI 97
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREG 271
+ AL +D ++ ++ NL + ++G
Sbjct: 98 EDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+AE + NL + YD + +++AL L + N A+ WYN+ + D AI+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREG 271
AL +D ++ ++ NL + ++G
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
N+A+ WYN+ + D AI+ AL +D ++ + NL ++G + A Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 281 QAAAASSPYLYETHYN 296
Q A P E N
Sbjct: 67 QKALELDPNNAEAKQN 82
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
EA +G ++ + A+ +Y++ L++ NAE + NL + YD + +++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 214 LSLALNENAA 223
L L N A
Sbjct: 70 LELDPNNAEA 79
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + YD + +++AL L + +A+ WYN+ + D AI+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 247 HLALSID 253
AL +D
Sbjct: 61 QKALELD 67
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 281
+A+ WYN+ + D AI+ AL +D + NL ++G + A Y Q
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 282 AAAASSP 288
A P
Sbjct: 62 KALELDP 68
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
EA +G ++ + A+ +Y++ L++ +AE + NL + YD + +++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 214 LSL 216
L L
Sbjct: 64 LEL 66
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
E A+ YR+ L++ A +NLA QQ + ++ ++ AD + N+
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLA--SVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
+ + D + A+QC A+ I+ + + +NLA + G+I A + A P
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Query: 290 LYETHYNQAVISNLAGD-------LQESYNIVKKSLD------LHPGHS 325
+ + N A + D +++ +IV L+ +HP HS
Sbjct: 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHS 192
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIV 314
+H S NNLA ++ +G+IE A + A P H N A + G LQE+
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 315 KKSLDLHP 322
K+++ + P
Sbjct: 67 KEAIRISP 74
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC---F 210
E A +G + + + +LL YR+ LQ+ NAEL+ LA +Y M
Sbjct: 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
Query: 211 ERALSLALNE 220
++AL+L NE
Sbjct: 105 DKALALDSNE 114
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 251 SIDSSHGLS-QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
S+D +H ++ +N LA E G + Y++ A S + E N+ V S D
Sbjct: 309 SVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENVSSAELFDRLP 368
Query: 310 SYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339
Y +VK +DL PG +I +K+ + +S
Sbjct: 369 KYYLVKTKVDLKPGLMVE-EIYKKILEVYS 397
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---L 258
+YD +T FERAL + A W + + +G+ + L +A + G L
Sbjct: 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79
Query: 259 SQNNLAVL---EARE---GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312
S+ +A+ E RE G++E+A + L+ A +P H + ++ L G+ ++
Sbjct: 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139
Query: 313 IVKKSLDLH 321
+K++L L
Sbjct: 140 SLKQALALE 148
>pdb|3E9C|A Chain A, Structure Of A Tryptic Core Fragment Of Tigar From Danio
Rerio
pdb|3E9C|B Chain B, Structure Of A Tryptic Core Fragment Of Tigar From Danio
Rerio
pdb|3E9D|A Chain A, Structure Of Full-Length Tigar From Danio Rerio
pdb|3E9D|B Chain B, Structure Of Full-Length Tigar From Danio Rerio
Length = 265
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 246 LHLALSIDSSHGLSQ-NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
L AL+I HG +Q N +L+ + + T Q AAA+ YL + H+ +SNL
Sbjct: 2 LTFALTI-VRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLKDLHFTNVFVSNLQ 60
Query: 305 GDLQESYNIVKKSL 318
+Q + I+ +L
Sbjct: 61 RAIQTAEIILGNNL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,011,865
Number of Sequences: 62578
Number of extensions: 325464
Number of successful extensions: 967
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 72
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)