RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16588
(341 letters)
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 90.7 bits (226), Expect = 1e-20
Identities = 34/219 (15%), Positives = 81/219 (36%), Gaps = 6/219 (2%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
+ LA + + ++ + +++ + + HF + + + F ++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
AE ++NL Q + + A L L + D + N++ + D A
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHA--LRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
+Q AL + +++L L G +E A A + P N + N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
G++ + + +K++ L P ++ ++L++ +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219
Score = 84.9 bits (211), Expect = 1e-18
Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 6/218 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
L+ I + S + L +K++ EA + +G + Q + A+ YR L++
Sbjct: 38 LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + NLA + + V + AL N + V ++ ++ + A
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSAL--QYNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
C A+ + ++ +NL + +G I A + + A P + + N +
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
A + ++L L P H+ + +
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Score = 76.4 bits (189), Expect = 9e-16
Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 6/216 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
NL +F + +++ +++ + D ++A +G + A+ Y R L +
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+A + NLA + D+ + + RA+ L + D + N+++ A
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
C + AL + +H S NNLA ++ +G+IE A + A P H N A +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLE 335
G LQE+ K+++ + P + ++ + L++++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 66.0 bits (162), Expect = 3e-12
Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 2/183 (1%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
NL + + +V Y L + ++ ++A+ YRR +++
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + + NLA C+ AL L AD N++++ + A+
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTAL--RLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
+ AL + + +NLA + ++G ++ A + + A SP + + N
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 304 AGD 306
D
Sbjct: 386 MQD 388
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 85.4 bits (212), Expect = 2e-19
Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 4/203 (1%)
Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
+ L + N + + L+ D + +A A + V +P++A YR+ L
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99
Query: 182 MGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENAADVWYNISHVAIGISDT 239
NA + NN F +Q Y+ A L + V+ N+ V++ +
Sbjct: 100 SDSRNARVLNNYGG--FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157
Query: 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
A + +L ++ + +A L +E A Y A +
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217
Query: 300 ISNLAGDLQESYNIVKKSLDLHP 322
++ + D + + + L+P
Sbjct: 218 LAKVFEDRDTAASYGLQLKRLYP 240
Score = 65.4 bits (160), Expect = 2e-12
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 8/158 (5%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+ + L L + +A L ++ ++AD ++ V + +LA +
Sbjct: 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKA--LEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS--PYLYETHYNQAVISNL 303
AL+ DS + NN + E A L A+ + P N ++S
Sbjct: 94 YRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
++ +KSL L+ D+L K +Y
Sbjct: 154 MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191
Score = 61.5 bits (150), Expect = 4e-11
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 4/173 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
LA +F+ ++ + Y+ L D+ + G + + E A Q
Sbjct: 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135
Query: 184 LY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
LY + +F NL L ++ FE++L L N N V ++ + +
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193
Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
A Q L + S L + A++Y P E
Sbjct: 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246
Score = 56.9 bits (138), Expect = 1e-09
Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 4/179 (2%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
G+ + E A + R+ L++ +A+ LA+ + + + +AL+ +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--D 101
Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLAL--SIDSSHGLSQNNLAVLEAREGHIERAS 277
A V N A Q L A ++ NL ++ + +A
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161
Query: 278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
Y + + + A + + + ++ S + +L +
Sbjct: 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220
Score = 50.0 bits (120), Expect = 3e-07
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 9/153 (5%)
Query: 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL 250
++ + + + + + A D + + + +T A L AL
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLK---TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64
Query: 251 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES 310
ID S + LAV+ E + A + A AS N +E+
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124
Query: 311 YNIVKKSLD--LHPGHSYSW----DILRKLEQY 337
Y + ++ L+P S + + ++++
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 80.4 bits (199), Expect = 6e-18
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 5/209 (2%)
Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
+ LA + + + + LK D A + Y + A +R+ L
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 182 MGLYNAELFNNLALC-CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR 240
+ +AE+ NN C + + F++AL+ N +
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130
Query: 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV- 299
LA L +L+ + LA + G + A Y + + L
Sbjct: 131 LAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK 190
Query: 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
I+ G+ Q +Y L YS
Sbjct: 191 IAKALGNAQAAYE---YEAQLQANFPYSE 216
Score = 65.0 bits (159), Expect = 2e-12
Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
+ + LA+ Q Y E A L + W + + + A +
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDA--LKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65
Query: 247 HLALSIDSSHGLSQNNL-AVLEAREGHIERASTYLQAAAASS--PYLYETHYNQAVISNL 303
ALSI NN L R + Y A A P Y + N+ + S
Sbjct: 66 RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
G + +K+SL P ++ Q
Sbjct: 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163
Score = 45.7 bits (109), Expect = 7e-06
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278
+++ ++ + D R A + AL D + L+ A + ++A
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 279 YLQAAAASSPYLYETHYNQAVI-SNLAGDLQESYNIVKK--SLDLHPGHSYSW----DIL 331
+ A + P E + N ES K + +P +
Sbjct: 64 SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123
Query: 332 RKLEQY 337
K Q+
Sbjct: 124 AKQGQF 129
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 82.3 bits (204), Expect = 6e-18
Identities = 26/230 (11%), Positives = 70/230 (30%), Gaps = 18/230 (7%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
++LA+ + M K +++++D + ++ +L+ +
Sbjct: 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85
Query: 183 GLYNAELFNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR 240
N + + C + + + +A +L + W H S+
Sbjct: 86 YPSNPVSWFAVG-CYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHD 142
Query: 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300
A+ A + L + + + + A + A + +P + V+
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Query: 301 SNLAGDLQESYNIVKKSLDLHPGHSYSWD-------------ILRKLEQY 337
+ G+ + + +L+ + RKL++Y
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Score = 71.6 bits (176), Expect = 3e-14
Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 7/196 (3%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
+ F + ++ Y + C + IG+ + + ++A F+ + L +
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-------LNENAADVWYNISHVAIG 235
+ + + + + F + ++ F AL + + N+ HV
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
+ A+ AL + + + + + + + G+ E A Y A +
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 296 NQAVISNLAGDLQESY 311
+ E+Y
Sbjct: 309 MLGHCIEMYIGDSEAY 324
Score = 70.0 bits (172), Expect = 9e-14
Identities = 18/189 (9%), Positives = 61/189 (32%), Gaps = 7/189 (3%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
+ + + H+YN ++ +++ ++A + + + +
Sbjct: 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82
Query: 214 LSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272
+ L + W+ + + + A + L A +++ ++G + A E
Sbjct: 83 VD--LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW---- 328
++A AA + + L + + + ++L + P +
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200
Query: 329 DILRKLEQY 337
+ + ++
Sbjct: 201 VVAFQNGEW 209
Score = 69.6 bits (171), Expect = 1e-13
Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 19/214 (8%)
Query: 139 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR--LLQMGLYNAELFNNLALC 196
+Y + T A G + + + A+ Y L G + + L
Sbjct: 111 RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP--MLYIGLE 168
Query: 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256
+ + F +ALS+ V + + VA + + A + AL +
Sbjct: 169 YGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226
Query: 257 GLSQ---------NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307
G NNL + + A Y + A P T+ I +L G+
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286
Query: 308 QESYNIVKKSLDLHPGHSYSWD----ILRKLEQY 337
+ + + +L L ++S +
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320
Score = 62.3 bits (152), Expect = 4e-11
Identities = 23/178 (12%), Positives = 45/178 (25%), Gaps = 10/178 (5%)
Query: 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 224
YN E + LQ N ++ +LA +Y+ + M + + A
Sbjct: 3 YNKPSETVIPESVDGLQ---ENLDVVVSLAERHYYNCDFKMCYKLTSVVME--KDPFHAS 57
Query: 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-IERASTYLQAA 283
+ ++ H + + S+ +S + GH E A YL A
Sbjct: 58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117
Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ + ++ + L G
Sbjct: 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 82.6 bits (204), Expect = 1e-17
Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 13/226 (5%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
L A + + IL+ D ++ + + + L L+
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
A + + + + F ++ + ++ W +H + A
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
I A + L L + + G+I A+ YLQ++ A Y V++
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486
Query: 303 LAGDLQE---SYN----IVKKSLDLHPGHSYSW----DILRKLEQY 337
D+Q + +VKK+ + +W RKL+ Y
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Score = 74.9 bits (184), Expect = 5e-15
Identities = 35/259 (13%), Positives = 70/259 (27%), Gaps = 49/259 (18%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL-------- 174
+++ L+N + + YK L DA C EA + NH E L+
Sbjct: 204 YLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263
Query: 175 ------FYRRLLQMGLY-----------------------NAELFNNLALCCFYSQQYDM 205
F R L + L +++L A F ++
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323
Query: 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265
V+ + L ++ DV+ + + + ++ + +
Sbjct: 324 VLAITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381
Query: 266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKKSLDLHP 322
I A Y ++ P A + G+ + +Y + L
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT---TAARLFQ 438
Query: 323 GHSYSW----DILRKLEQY 337
G + +L
Sbjct: 439 GTHLPYLFLGMQHMQLGNI 457
Score = 74.5 bits (183), Expect = 6e-15
Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 5/179 (2%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
+ A F ++ Y + +G+ H +A + + +
Sbjct: 411 IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVWYNISHVAIGIS 237
Y+ L N L + F + F+ AL L + A W N+ H +
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530
Query: 238 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296
AI L+ L + ++ +A++ + A T+L + A SP
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589
Score = 70.6 bits (173), Expect = 1e-13
Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 13/217 (5%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM- 182
+ + +N + + +Y+ D A + + + A+ Y ++
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437
Query: 183 -GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
G + + L + + + + +L + + + VA SD +
Sbjct: 438 QGTHLP--YLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQT 493
Query: 242 AIQCLHLALSIDSSHGLSQ-------NNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
AI AL + ++ NL + + A L S H
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553
Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
A++ + + +SL + P + D+L
Sbjct: 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590
Score = 53.7 bits (129), Expect = 4e-08
Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 13/194 (6%)
Query: 143 KLILKRDATCMEAIAC--IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200
KL+++ +EA C G + + A Y+ L + E F+ L +
Sbjct: 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLT 247
Query: 201 QQYDMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254
+ ++ L L + Y + D + +++
Sbjct: 248 ADEE-----WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302
Query: 255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIV 314
A PY + + + +G+ + Y I
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362
Query: 315 KKSLDLHPGHSYSW 328
+D HP + +W
Sbjct: 363 NDLVDRHPEKAVTW 376
Score = 34.0 bits (78), Expect = 0.068
Identities = 21/163 (12%), Positives = 39/163 (23%), Gaps = 18/163 (11%)
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
L + QQY E+ L + N N A + ++ V D A
Sbjct: 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDA---FWLAQVYCCTGDYARAK 137
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIE---------------RASTYLQAAAASSP 288
L + S L + + L
Sbjct: 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197
Query: 289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
Y + + + + K++L + ++D L
Sbjct: 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240
Score = 30.2 bits (68), Expect = 0.98
Identities = 10/97 (10%), Positives = 24/97 (24%), Gaps = 3/97 (3%)
Query: 100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACI 159
+ L + ++ NL + L ++ L I
Sbjct: 500 NALLLVKKTQSNEKPWAAT---WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 196
+ + + P +A+ L + + L
Sbjct: 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 76.8 bits (188), Expect = 2e-15
Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
E A+ YR+ L++ A +NLA + + ++ A+ ++ AD +
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
N+ + + D + A+QC A+ I+ + + +NLA + G+I A + A
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324
P + + N A + D + +KK + +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178
Score = 69.1 bits (168), Expect = 4e-13
Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 2/217 (0%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
NLA I N+ +V+ Y+ L+ A + + + + AL+ Y+ +++
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
A+ ++N+ Q + C+ RA + +N AD N++ + + AI
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRA--IQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
AL + + NLA ++ + E + +V +
Sbjct: 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340
+ S+ K + H + Y
Sbjct: 192 SMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228
Score = 68.7 bits (167), Expect = 6e-13
Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+A+ NNLA + V + +AL + A N++ V + A+
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
A+ I + + +N+ ++ A A +P + H N A I +G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 306 DLQESYNIVKKSLDLHPGHSY 326
++ E+ + +L L P
Sbjct: 126 NIPEAIASYRTALKLKPDFPD 146
Score = 55.6 bits (133), Expect = 1e-08
Identities = 19/111 (17%), Positives = 47/111 (42%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
AD N++++ + A++ AL + + +NLA + ++G ++ A +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
+ A SP + + N D+Q + +++ ++P + + L
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117
Score = 30.2 bits (67), Expect = 1.1
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
S P ++ N A I G+++E+ + +K+L++ P + + +L++ +
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 74.8 bits (184), Expect = 6e-15
Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 7/222 (3%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
+ + + + + + A+ G+ HF + A + + + +
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
+ LAL + F++A+ L N +Y+ + + D + A
Sbjct: 273 HP-TPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNA 329
Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
+ A S++ + LA L ++G + + P L E A I
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQYFSY 340
GD + + L ++ K
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431
Score = 70.1 bits (172), Expect = 2e-13
Identities = 19/217 (8%), Positives = 56/217 (25%), Gaps = 9/217 (4%)
Query: 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ--PEVALLFYRRLLQMGL 184
+N + L+R + + + + L +
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
A + F + +++L + + ++ +++ +
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYIFLALTLADKENSQEFFK 297
Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
A+ ++ + + + + + A Q A + +P + A +
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357
Query: 305 GDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
G ES ++ P +IL +
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394
Score = 61.7 bits (150), Expect = 1e-10
Identities = 25/224 (11%), Positives = 55/224 (24%), Gaps = 18/224 (8%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
LA N K+++ + + G +F + A +++ +
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
N + LA + ++ F +V + + D AI
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAI 398
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEARE----------------GHIERASTYLQAAAASS 287
+ +A ++ + L + A L A
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
P + A + + E+ + + S L
Sbjct: 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
Score = 58.6 bits (142), Expect = 1e-09
Identities = 21/191 (10%), Positives = 56/191 (29%), Gaps = 18/191 (9%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ +++ L + + + ++ + + + + + + F+
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI-----------SHV 232
E+ A +D + ++ A L E + I
Sbjct: 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPLIGKATILARQS 432
Query: 233 AIGISDTRL-----AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
+ + AI+ L A +D ++ LA L+ + I+ A + +A +
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
Query: 288 PYLYETHYNQA 298
+ E
Sbjct: 493 RTMDEKLQATT 503
Score = 54.7 bits (132), Expect = 2e-08
Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 17/231 (7%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQPEVALLFYRR 178
L A E L N ++ ++ A+ + E R
Sbjct: 97 LRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156
Query: 179 LLQMGLYNAELFNNLAL--------CCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230
Q+ N L + + S YD AL +
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216
Query: 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
+ + + + + L+ + + ++ A LQ + P
Sbjct: 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT- 275
Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
++ A+ + QE + +K++DL+P + ++ + L+ Y
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326
Score = 52.0 bits (125), Expect = 1e-07
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
A N F ++ ++ + ++ A+ L+ N + NIS I D I+
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFT 82
Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
AL I H + A G+ A L + + +
Sbjct: 83 TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125
Score = 51.3 bits (123), Expect = 3e-07
Identities = 19/187 (10%), Positives = 60/187 (32%), Gaps = 14/187 (7%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
G + F A+ +Y+ +++ ++N++ C + + V+ +AL +
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE--I 88
Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA----VLEAREGHIE 274
+ + + + + A+ L + G S + +A + E
Sbjct: 89 KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNE 148
Query: 275 RASTYLQAAAASSP-----YLYETHYNQAVISN---LAGDLQESYNIVKKSLDLHPGHSY 326
S + P + ++ + + + + +Y ++ +L +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 327 SWDILRK 333
++
Sbjct: 209 EGYLVAN 215
Score = 44.7 bits (106), Expect = 3e-05
Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 51/264 (19%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
N F N ++KYY+ ++ D + I + E + F + L++
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERA---------------------LSLALNENA 222
+++ A + + ++ +
Sbjct: 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149
Query: 223 ADVWYNIS----------HVAIGISDTRLAIQCLHL-------------ALSIDSSHGLS 259
GI D+ L + ++ AL S
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209
Query: 260 QNNLA--VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317
+A +L + + L +L ++ ++++S
Sbjct: 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269
Query: 318 LDLHPGHSYSW----DILRKLEQY 337
++LHP S+ L E
Sbjct: 270 INLHP-TPNSYIFLALTLADKENS 292
Score = 43.2 bits (102), Expect = 8e-05
Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 5/132 (3%)
Query: 202 QYDMVVTCFERALSLALNENA--ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS 259
+ + L+ ++ A N + + AI+ A+ +D + +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKK 316
+N++ G +E+ + A P + +A + G+ + +++
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121
Query: 317 SLDLHPGHSYSW 328
+ D
Sbjct: 122 NGDFDGASIEPM 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 68.3 bits (167), Expect = 3e-14
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)
Query: 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR 178
++ I + + S K I M+ I + + + E A +F+R
Sbjct: 2 SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61
Query: 179 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD 238
L YN + LA +Q+ + A AL +N ++ + +
Sbjct: 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA--FALGKNDYTPVFHTGQCQLRLKA 119
Query: 239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268
A +C L + + L + L+A
Sbjct: 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
Score = 48.3 bits (115), Expect = 4e-07
Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 2/128 (1%)
Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
+ + + + + A + + + F + D ++ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC--IYDFYNVDYIMGLAAIYQI 82
Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
+ A +A ++ + + + R +A + S
Sbjct: 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142
Query: 296 NQAVISNL 303
Q+ + +
Sbjct: 143 AQSYLDAI 150
Score = 40.5 bits (95), Expect = 2e-04
Identities = 11/110 (10%), Positives = 29/110 (26%)
Query: 216 LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
A+ ++ D Y+ ++ A D + LA + + ++
Sbjct: 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88
Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
A+ A A Y ++ ++ + +
Sbjct: 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
Score = 32.5 bits (74), Expect = 0.080
Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317
L+ + + L+ A + + Y+ A G ++E+ +
Sbjct: 3 LNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL 62
Query: 318 LDLHPGHSYSW----DILRKLEQY 337
+ I + EQ+
Sbjct: 63 CIYDFYNVDYIMGLAAIYQIKEQF 86
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 70.2 bits (171), Expect = 6e-14
Identities = 41/233 (17%), Positives = 67/233 (28%), Gaps = 13/233 (5%)
Query: 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIA--CIGVNHFYND 167
+ P +Q R+ A+ + V + R +FY+
Sbjct: 57 IKPSSAPELQAVRM-FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
P+ AL + + E + D+ ++ +E+A
Sbjct: 116 NPDAALRTLHQGD-----SLECMAMTVQILLKLDRLDLARKELKKMQ--DQDEDATLTQL 168
Query: 228 NISHVAIGISDTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285
+ V++ +L A S L N A +G E A LQ A
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSL-DLHPGHSYSWDILRKLEQY 337
ET N V+S G E N L D H H + + K +
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDF 281
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 70.2 bits (172), Expect = 1e-13
Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 3/199 (1%)
Query: 130 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 189
+ + K ++ G+ F + P A ++ +++
Sbjct: 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNS 272
Query: 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249
+ +AL F++AL L + N + V+Y+ + + + A + A
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 250 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
+D + LA L RE + T A P E A I D +
Sbjct: 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390
Query: 310 SYNIVKKSLDLHPGHSYSW 328
+ +++L +
Sbjct: 391 ALKQYDLAIELENKLDGIY 409
Score = 67.1 bits (164), Expect = 2e-12
Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 7/172 (4%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
E L ++ A + + F ++A+ L N+ + +
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS---YIYM 276
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
+ + +D+ AL +DS++ + + + ++A A P
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ A ++ + + ++ P +IL +
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Score = 65.1 bits (159), Expect = 7e-12
Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 11/222 (4%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+A I N+ Y+ LK D+ G +F + A + + ++
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
N + LA + ++D T F A A +V + + +D A+
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392
Query: 244 QCLHLALSIDSSHGLSQNNLAVL---------EAREGHIERASTYLQAAAASSPYLYETH 294
+ LA+ +++ +A L + A+ L+ A+ P +
Sbjct: 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452
Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
A + D+ E+ + ++S DL + E
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494
Score = 55.9 bits (135), Expect = 8e-09
Identities = 18/171 (10%), Positives = 46/171 (26%), Gaps = 12/171 (7%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
LA + N + ++ E + + AL Y +++
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402
Query: 184 LYNAELFNNLALC---------CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 234
++ +A + + E+A L + + ++ + +
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKL 460
Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285
D AI + + + + EA + +R + A
Sbjct: 461 QQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ-QRIRSDPVLAKK 510
Score = 50.1 bits (120), Expect = 5e-07
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 6/140 (4%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
A + F +++YD + + A L L E+ + N+S + + D + ++
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWA--LELKED-PVFYSNLSACYVSVGDLKKVVEM 61
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA---ASSPYLYETHYNQAVISN 302
AL + + A G A L + + E + +
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121
Query: 303 LAGDLQESYNIVKKSLDLHP 322
L+E + + +
Sbjct: 122 AMSKLKEKFGDIDTATATPT 141
Score = 46.3 bits (110), Expect = 8e-06
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 8/157 (5%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
G F N + + A+ +Y L+ L + ++NL+ C VV +AL L
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALE--LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--L 68
Query: 219 NENAADVWYNISHVAIGISDTRLAIQC---LHLALSIDSSHGLSQNNLAVLEAREGHIER 275
+ + V + G+ A+ L L + + + + ++
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE 128
Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312
+ A A+ L + S
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165
Score = 40.5 bits (95), Expect = 6e-04
Identities = 26/244 (10%), Positives = 62/244 (25%), Gaps = 31/244 (12%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
NL+ + + ++ V+ L+ + + + + A+ L G
Sbjct: 44 NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103
Query: 184 LYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV-----------WYNI 229
+N E L + + A + +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSH-----GLSQNNLAVLEAREGHIERASTYLQAAA 284
GI L + D L + + + + +A+ +
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223
Query: 285 AS-------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRK 333
L + + + L D ++ +KK+++L P S+ I+
Sbjct: 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMAD 282
Query: 334 LEQY 337
Sbjct: 283 RNDS 286
Score = 29.7 bits (67), Expect = 1.5
Identities = 7/76 (9%), Positives = 19/76 (25%)
Query: 121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 180
+ L + N + + K D +A + + + A+ +
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Query: 181 QMGLYNAELFNNLALC 196
+ E +
Sbjct: 477 DLARTMEEKLQAITFA 492
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 66.7 bits (163), Expect = 3e-13
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 4/170 (2%)
Query: 141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200
Y+ + K + + + + N + A LFY+ LLQ N + A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD-TRLAIQCLHLALSIDSSHGLS 259
Q + +E+ L L + + + ++ + ++ + LS + +
Sbjct: 102 GQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
+ + + E+A LQ P E I + ++
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR 208
Score = 66.7 bits (163), Expect = 3e-13
Identities = 18/151 (11%), Positives = 51/151 (33%), Gaps = 3/151 (1%)
Query: 173 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232
+ ++ + + +++L LAL ++ YD ++ L N D + +
Sbjct: 40 MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL--LQKAPNNVDCLEACAEM 97
Query: 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS-TYLQAAAASSPYLY 291
+ + A++ L +++ + + L E+ +S +
Sbjct: 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157
Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322
Y + +++ N ++K + P
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFP 188
Score = 61.7 bits (150), Expect = 2e-11
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
LA ++ N + +YK +L++ ++ + Q + AL Y ++LQ+
Sbjct: 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 184 LYNAELFNNLALCCFYS-QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
N L + + +Q + + LS Y + + A
Sbjct: 119 ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKA 176
Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
L + S Q L + E + R
Sbjct: 177 RNSLQKVILRFPSTEA-QKTLDKILRIEKEVNR 208
Score = 51.7 bits (124), Expect = 6e-08
Identities = 17/143 (11%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+ + + Q V+ F + ++L N + +++Y + ++LA
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLA--- 57
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
LA+ + + ++A + + +P + A + G
Sbjct: 58 ---------------TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102
Query: 306 DLQESYNIVKKSLDLHPGHSYSW 328
+++ + +K L L + +
Sbjct: 103 QEKDALRMYEKILQLEADNLAAN 125
Score = 30.9 bits (70), Expect = 0.37
Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 22/119 (18%)
Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282
D AI A+ ++++ E + Y
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------EMY------YWTN 45
Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+S + A+ + ++Y K+ L P + ++ Q
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 68.6 bits (168), Expect = 5e-13
Identities = 23/230 (10%), Positives = 65/230 (28%), Gaps = 18/230 (7%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
+ A G + ++ + IL+ E +P A+ + ++
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV---------- 232
N E F ++ + +++ ++ L L +++ + + V
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 264
Query: 233 --AIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAAS 286
I A + + S S+ + +++ A
Sbjct: 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324
Query: 287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
P ++A + E+ + + + + + L K ++
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Score = 63.6 bits (155), Expect = 2e-11
Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 13/232 (5%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
L L K + ++ + + D A + + AL +++Q+
Sbjct: 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-------------ALNENAADVWYNI 229
+ + D F++ L + + +
Sbjct: 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
+ A G D AI L L + + A +EG +A + L+AA+
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
E Y + + GD + S + V++ L L H + +++++ +
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261
Score = 58.2 bits (141), Expect = 1e-09
Identities = 28/249 (11%), Positives = 71/249 (28%), Gaps = 37/249 (14%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
A +F + ++ +++ A G + + A ++++L+
Sbjct: 65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 184 LYNAELFN---------------NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228
E + AL F S Y + ++ L + A++
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL--EVCVWDAELREL 182
Query: 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
+ I + R AI L A + + + + ++ L + G E + + ++
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 289 YLYETHYNQAVISNL------------AGDLQESYNIVKKSLDLHPGHSYSW-------- 328
+ + L G ++ + + + P +
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302
Query: 329 DILRKLEQY 337
K E+
Sbjct: 303 HCFSKDEKP 311
Score = 58.2 bits (141), Expect = 1e-09
Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 32/249 (12%)
Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
R A+ F ++ K K EA I ++ E++L R L+
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 182 MGLYNAELFNNLALCC------------FYSQQYDMVVTCFERALSL--ALNENAADVWY 227
+ + F + +Y + +E + ++ E
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
I H AI+ L ++ + + + A E + A + A +
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359
Query: 288 PYLYETHYNQAVISNLAGDLQES-YNIV-----------------KKSLDLHPGHSYSWD 329
+ L Q+ Y + K +L HP + + +
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEE 419
Query: 330 ILRKLEQYF 338
+K E+ F
Sbjct: 420 EKKKAEKKF 428
Score = 47.0 bits (112), Expect = 5e-06
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 14/154 (9%)
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
++ ++ + Y + E+ L L +A G A+
Sbjct: 1 MH-HHHHHSSGVDLGTENLYFQSMADVEKHLELG-----------KKLLAAG--QLADAL 46
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
H A+ D + ++ A + G + A L + +
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337
G L E+ + KK L +P + + +L +
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 67.3 bits (165), Expect = 5e-13
Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 1/176 (0%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
+ F N+ A+ + +L + ++N A+C + +YD+ E
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 214 LS-LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272
S + + + + + + LAIQ A+ D++ + +G+
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123
Query: 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
A Y++ + + Y + ++ + K L+L P +
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179
Score = 61.5 bits (150), Expect = 5e-11
Identities = 16/159 (10%), Positives = 46/159 (28%), Gaps = 9/159 (5%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
N ++ A F + Y + F + + N+ ++ + ++ LA +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKD 59
Query: 246 LHL---ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
+ ++ + + ++G A QAA + +
Sbjct: 60 IETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
G+ + ++K + + ++Y
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158
Score = 60.0 bits (146), Expect = 1e-10
Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 35/221 (15%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
KI ++++ Y+ + RD T ++ IG + +A+ + + ++
Sbjct: 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR--- 240
+ ++F L +Y+++Y + F + L L N + +
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300
LA + + + G L E + A
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYK--------------------------DELIEANEYIAYY 230
Query: 301 SNLAGDLQESYNIVKKSLDLHPGHSYSWD----ILRKLEQY 337
+ D ++ K L L P + + D L +
Sbjct: 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 64.8 bits (158), Expect = 5e-13
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 6/138 (4%)
Query: 142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201
++ +E + +G N + + + A ++ L + Y+A F L C
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----G 257
Y+ + + ++ N ++ + + + D A + A ++ ++
Sbjct: 67 LYEQALQSYSYG--ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
Query: 258 LSQNNLAVLEAREGHIER 275
L+ A+LEA +R
Sbjct: 125 LAARAGAMLEAVTARKDR 142
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/126 (11%), Positives = 30/126 (23%)
Query: 216 LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
L+E+ + Y + A + +D L G E+
Sbjct: 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70
Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335
A A ++ A GDL + + + L + +
Sbjct: 71 ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130
Query: 336 QYFSYL 341
+
Sbjct: 131 AMLEAV 136
Score = 46.7 bits (111), Expect = 1e-06
Identities = 17/105 (16%), Positives = 28/105 (26%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
L + K ++ + D +G E AL Y M
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228
+ + A C D + F A +LA + A +
Sbjct: 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127
Score = 38.6 bits (90), Expect = 7e-04
Identities = 9/96 (9%), Positives = 20/96 (20%), Gaps = 4/96 (4%)
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
L + + L + + G + A QA Y G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 306 DLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+++ + + +L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 66.9 bits (164), Expect = 1e-12
Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 21/223 (9%)
Query: 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 193
+M + Y E G++ A L + + Q E + +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253
L +++ + + A L+ V ++ + A+ L L
Sbjct: 62 GLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119
Query: 254 SSH---------------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298
+ L+ + A T L AA +P + H +
Sbjct: 120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179
Query: 299 VISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
V+ NL+ + + ++++++L P + W L +
Sbjct: 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222
Score = 54.2 bits (131), Expect = 2e-08
Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 12/179 (6%)
Query: 154 EAIACIGVNHFYND----QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
A+A QP+ L L + + +Y T
Sbjct: 107 AALAS------LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
AL +N N A + ++ + ++ A L A+ + N L A
Sbjct: 161 LHAAL--EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218
Query: 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
+ A A +P YN AV + + + +++ + G +
Sbjct: 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277
Score = 49.2 bits (118), Expect = 8e-07
Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 9/194 (4%)
Query: 108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 167
S+ Q D ++ + F N L+ + + A +GV + ++
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
+ A RR +++ +A+L+N L + + + RAL +N V Y
Sbjct: 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL--DINPGYVRVMY 244
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA--AA 285
N++ +S LA + L A+ + + R + +
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS-----MWDFFRMLLNVM 299
Query: 286 SSPYLYETHYNQAV 299
+ P L E Y Q V
Sbjct: 300 NRPDLVELTYAQNV 313
Score = 32.6 bits (75), Expect = 0.13
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 271 GHIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW- 328
GH+ + +T A ++PY+Y E + + +L E+ + P +W
Sbjct: 1 GHMLQNNTDYPFEA-NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 329 ---DILRKLEQY 337
+ E+
Sbjct: 60 SLGLTQAENEKD 71
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 67.0 bits (164), Expect = 1e-12
Identities = 44/252 (17%), Positives = 80/252 (31%), Gaps = 32/252 (12%)
Query: 112 QPDGPFIQVSR-LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 170
+ + P + ++P +V ++ +++D MEA +G N+Q
Sbjct: 56 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115
Query: 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN-- 228
+A+ RR L++ N LA+ L A +
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAE 173
Query: 229 --ISHVAIGISDTRL-----------AIQCLHLALSIDSSHGLS--QNNLAVLEAREGHI 273
+G S L + A+ +D + Q L VL G
Sbjct: 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233
Query: 274 ERASTYLQAAAASSPYLYETHYNQ-AVISNLAGDLQE---SYNIVKKSLDLHPGHSYSW- 328
++A AA + P Y A ++N +E +Y ++L+L PG+ S
Sbjct: 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVAAYR---RALELQPGYIRSRY 289
Query: 329 ---DILRKLEQY 337
L +
Sbjct: 290 NLGISCINLGAH 301
Score = 55.8 bits (135), Expect = 6e-09
Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 10/179 (5%)
Query: 154 EAIACIGVNHFYND----QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
+A D P A L G + + V
Sbjct: 150 QACEI------LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 203
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
F A+ L DV + + + A+ C ALS+ + L N L A
Sbjct: 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263
Query: 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
E A + A P + YN + G +E+ ++L++
Sbjct: 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Score = 52.3 bits (126), Expect = 8e-08
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 4/137 (2%)
Query: 172 ALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
+ +++ + ++ L + S +YD V CF ALS+ N +W +
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKL 257
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
+ + A+ AL + + S+ NL + G A + A
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317
Query: 290 LYETHYNQAVISNLAGD 306
+S
Sbjct: 318 SRGPRGEGGAMSENIWS 334
Score = 46.6 bits (111), Expect = 6e-06
Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 8/166 (4%)
Query: 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-- 222
+ L +M +AE L S D+ +++
Sbjct: 10 IESDVDFWDKLQAELEEMAKRDAEAHPWL------SDYDDLTSATYDKGYQFEEENPLRD 63
Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282
+ + D A+ A+ D H + L +A A + L+
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123
Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
P AV +++ I++ L P +++
Sbjct: 124 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169
Score = 30.0 bits (68), Expect = 1.1
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 32/136 (23%)
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
FERA + E+ D W + +++ +
Sbjct: 3 FERAK--SAIESDVDFWDKL----------------------QAELEEMAKRDAEAHPWL 38
Query: 270 EGHIERASTYLQAA---AASSPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
+ + S +P + + + GDL + + + ++ P H
Sbjct: 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 98
Query: 326 YSW----DILRKLEQY 337
+W + EQ
Sbjct: 99 EAWQYLGTTQAENEQE 114
Score = 28.1 bits (63), Expect = 4.6
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 220
+ G + +++ L L Q D R LS L
Sbjct: 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 66.6 bits (163), Expect = 1e-12
Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 18/231 (7%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
++ + + + S K Y + G+ V +LF +
Sbjct: 35 ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
+AE + L + ++ + +R L L N ++ S + A
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQPNNLKALMALAVSYTNTSHQQDA 152
Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST-----------YLQAAAASSPYL- 290
+ L + + + N + ++ YL+AA + +
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212
Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ V+ +L+G+ + + +L + P W L ++
Sbjct: 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263
Score = 64.3 bits (157), Expect = 1e-11
Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 18/231 (7%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
++P+++ + + + +D EA +G+ N+ + A++ +R L++
Sbjct: 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN--ISHVAIGISDTR 240
N + LA+ + + + N + N S
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 241 L--------AIQCLHLALSIDSSHG--LSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
+ A + Q L VL G RA AA P
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
Y +E+ ++L++ PG S L Y
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Score = 54.3 bits (131), Expect = 2e-08
Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 10/218 (4%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
L N ++ + L+ ++A+ + V++ + A + ++
Sbjct: 104 FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163
Query: 184 LYNAELFNNLALCCFYSQQYDM----------VVTCFERALSLALNENAADVWYNISHVA 233
L N +++ V + A + D+ + +
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223
Query: 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 293
+ AI + AL++ N L A E A A P +
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283
Query: 294 HYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
YN + G +E+ + +L L +
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP 321
Score = 52.0 bits (125), Expect = 9e-08
Identities = 25/209 (11%), Positives = 64/209 (30%), Gaps = 16/209 (7%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL--- 179
+ LA + ++ + + K +K++ + + + + + L
Sbjct: 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
Query: 180 ---------LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230
+ + +L L + S +++ + F AL++ +W +
Sbjct: 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLG 254
Query: 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
+ A++ AL I S+ NL + G A + A +
Sbjct: 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314
Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLD 319
++G++ + I +D
Sbjct: 315 RNQQQVPH--PAISGNIWAALRIALSLMD 341
Score = 46.2 bits (110), Expect = 6e-06
Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 10/148 (6%)
Query: 200 SQQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253
+ +++ E E A W + + A + + +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI 313
+ +EG + +++AA P E + + Q +
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121
Query: 314 VKKSLDLHPGHSYSW----DILRKLEQY 337
+++ L+L P + +
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQ 149
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 65.6 bits (161), Expect = 1e-12
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 6/172 (3%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
E A + + ++ +A + N A + + + +++AL L + +AA +Y
Sbjct: 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
+V + + A AL +G L + + + A YLQ A +
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
E + + G L E+ + + PGH+ ++ E
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Score = 64.8 bits (159), Expect = 2e-12
Identities = 32/218 (14%), Positives = 77/218 (35%), Gaps = 6/218 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + + + ++ + ++ E AL FY + L++
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
A + + Y FE+AL D++Y + V + + +LA+
Sbjct: 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLAL 145
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A+ ++ + ++ + A EG ++ A + A P + YN V
Sbjct: 146 PYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ +++ ++ K++D+ P H + + +
Sbjct: 206 KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
Score = 59.1 bits (144), Expect = 2e-10
Identities = 17/157 (10%), Positives = 50/157 (31%), Gaps = 6/157 (3%)
Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
+ Y+ F +A+ N+ A + N +++ +++ A+
Sbjct: 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALA 78
Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
AL +DSS + + + + A + A + + Y +
Sbjct: 79 FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138
Query: 305 GDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ + ++++++L+ + + L
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 66.8 bits (163), Expect = 2e-12
Identities = 25/181 (13%), Positives = 39/181 (21%), Gaps = 10/181 (5%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
LL R ++ + + LA +R L AL+ +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVA 61
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
+ V A L A H L G E A+ A
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 288 PYLYETHYNQAVISNLAGD--------LQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339
P D Q + + + P S D + +
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181
Query: 340 Y 340
Sbjct: 182 R 182
Score = 62.9 bits (153), Expect = 4e-11
Identities = 13/149 (8%), Positives = 31/149 (20%), Gaps = 2/149 (1%)
Query: 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 193
+ P + + ++ A + + +R L + + E L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253
+ Q++ ++A + + H A A +
Sbjct: 64 GRVRWTQQRHAEAAVLLQQA--SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 254 SSHGLSQNNLAVLEAREGHIERASTYLQA 282
L R
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
Score = 56.0 bits (135), Expect = 6e-09
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 5/170 (2%)
Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
L LA G+ + + L EA+A +G + + A + ++
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
+ + L + Q + + RA L + + + + D R
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQLLPEEPYITAQLLNWRRRLCDWRA 143
Query: 242 A---IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
+ A++ L+ + + A T QA AAS
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVR 193
Score = 37.5 bits (87), Expect = 0.006
Identities = 16/61 (26%), Positives = 21/61 (34%)
Query: 271 GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330
R L+AA P + A GD V++ L LHPGH +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 331 L 331
L
Sbjct: 63 L 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 65.0 bits (159), Expect = 5e-12
Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 13/232 (5%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
L L K + ++ + + D A + + AL +++ +
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-------------ALNENAADVWYNI 229
+ + D F++ L + + +
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
+ A +D AI L L + + A +EG +A + L+AA+
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
E Y + + GD + S + V++ L L H + +++++ +
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238
Score = 62.3 bits (152), Expect = 5e-11
Identities = 22/235 (9%), Positives = 61/235 (25%), Gaps = 22/235 (9%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
+ A + ++ + IL+ E +P A+ + ++
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV---------- 232
N E F ++ + +++ ++ L L +++ + + V
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241
Query: 233 --AIGISDTRLAIQCLHLALSIDSSHGLSQ----NNLAVLEAREGHIERASTYLQAAAAS 286
I A + + S + +++ A
Sbjct: 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301
Query: 287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
P ++A + E+ + + + + R L+Q
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
Score = 61.5 bits (150), Expect = 8e-11
Identities = 29/249 (11%), Positives = 69/249 (27%), Gaps = 37/249 (14%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
A +F + ++ ++ A G + + A ++++L+
Sbjct: 42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 184 LYNAELFNNL---------------ALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228
E AL F Y +T ++ L + A++
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELREL 159
Query: 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
+ I + R AI L A + S + + ++ L + G E + + ++
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 289 YLYETHYNQAVISNL------------AGDLQESYNIVKKSLDLHPGHSYSW-------- 328
+ + L G ++ + + + P +
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279
Query: 329 DILRKLEQY 337
K E+
Sbjct: 280 HCFSKDEKP 288
Score = 60.0 bits (146), Expect = 3e-10
Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 21/171 (12%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+ E L + Q ++ F A + + + +Y + V + + ++ A+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAA--VDGDPDNYIAYYRRATVFLAMGKSKAALPD 59
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL-- 303
L +++ ++ L ++G ++ A + S+P E ++ +
Sbjct: 60 LTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119
Query: 304 -------------AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
D + + K L++ + + K +
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170
Score = 55.0 bits (133), Expect = 1e-08
Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 14/189 (7%)
Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
R A+ F ++ K K + EA I ++ E++L R L+
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 182 MGLYNAELFNNL------------ALCCFYSQQYDMVVTCFERALSL--ALNENAADVWY 227
+ + F + A +Y + +E + ++ E
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
I H AI+ L ++ + + + A E + A +AA +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336
Query: 288 PYLYETHYN 296
+
Sbjct: 337 ENDQQIREG 345
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 64.1 bits (157), Expect = 6e-12
Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 14/185 (7%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
G + Q + A+ Y + ++ + NN A + +Y+ ++ A+
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQG 68
Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
+ IS I + + L + L+++ A + + + E+
Sbjct: 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLRNAEKELKK 127
Query: 280 LQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKKSLDLHPGHSYSW----DILR 332
+A A +P E + D +Y + + P + + L
Sbjct: 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT---EMIKRAPEDARGYSNRAAALA 184
Query: 333 KLEQY 337
KL +
Sbjct: 185 KLMSF 189
Score = 56.8 bits (138), Expect = 2e-09
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 8/156 (5%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
A+ + ++Q+D + + +A L+++ N + + AI
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWE--LHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
L+ A+ ++ AR G+ L+ T + A I
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTADILTKLR 119
Query: 306 DLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ ++ + ++P + +
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155
Score = 55.6 bits (135), Expect = 4e-09
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 2/142 (1%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
A I L N +K + + E G +F A+ Y +++
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+A ++N A + + +A+ + N + + I + + A+
Sbjct: 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASAL 227
Query: 244 QCLHLALSIDSSHGLSQNNLAV 265
+ L A + D+ + +
Sbjct: 228 ETLDAARTKDAEVNNGSSAREI 249
Score = 52.9 bits (128), Expect = 3e-08
Identities = 22/185 (11%), Positives = 44/185 (23%), Gaps = 3/185 (1%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
++K F + N + K ++ + E L +
Sbjct: 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-TADILTKLRNAEKELKKAEAEAYVN 135
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
AE F + V + + A + N + + AI
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--KRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
+ A+ D + + A + A L AA + + +
Sbjct: 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
Query: 304 AGDLQ 308
Q
Sbjct: 254 YKASQ 258
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 61.7 bits (151), Expect = 1e-11
Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 6/157 (3%)
Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
+ + + + +Y V E+ + DV ++ + +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
L +L+ + L + + + A L A ++P + + V +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123
Query: 305 GDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
G E+ + K +L L P ++ ++
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
Score = 58.2 bits (142), Expect = 2e-10
Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 2/175 (1%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
G++H + A++ ++ ++ ++ +L + + D ER+L+
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-- 71
Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278
+ V + + + LA+ L + + + L V G + A
Sbjct: 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131
Query: 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333
+ A P + H A G +E+ KK+ +L G S ++ +
Sbjct: 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR 186
Score = 47.1 bits (113), Expect = 1e-06
Identities = 13/126 (10%), Positives = 39/126 (30%), Gaps = 4/126 (3%)
Query: 216 LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
+ ++ + + A+ L D+ +L + + G ++R
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DIL 331
+ L+ + A +P + + + ++ K + +P + L
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
Query: 332 RKLEQY 337
L ++
Sbjct: 121 DNLGRF 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 60.7 bits (147), Expect = 1e-11
Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201
++ + + +E + + N + + E A ++ L + Y++ F L C
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255
QYD+ + + ++ ++ + + + A L LA + ++
Sbjct: 70 QYDLAIHSYSYG--AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Score = 46.8 bits (111), Expect = 1e-06
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 2/135 (1%)
Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
L ++ E +LA + S Y+ F+ L+ + + +
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC--VLDHYDSRFFLGLGACRQA 67
Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
+ LAI +D + A + G + A + L A E
Sbjct: 68 MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127
Query: 296 NQAVISNLAGDLQES 310
+S++ ++
Sbjct: 128 LSTRVSSMLEAIKLK 142
Score = 44.1 bits (104), Expect = 9e-06
Identities = 12/94 (12%), Positives = 25/94 (26%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+LA + ++ + D +G Q ++A+ Y M
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 217
+ + A C + + A L
Sbjct: 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119
Score = 36.8 bits (85), Expect = 0.003
Identities = 11/87 (12%), Positives = 19/87 (21%)
Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301
+ + I S +LA + + G E A QA Y
Sbjct: 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACR 65
Query: 302 NLAGDLQESYNIVKKSLDLHPGHSYSW 328
G + + +
Sbjct: 66 QAMGQYDLAIHSYSYGAVMDIXEPRFP 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 63.9 bits (155), Expect = 2e-11
Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 28/225 (12%)
Query: 138 SVKYYKLILKRDATCMEAIACIGVN-HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 196
+++ + +L +A+ G + D A + + +++ E +N L
Sbjct: 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146
Query: 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL---------AIQCLH 247
+ TCF AL+ N N+S V + +++
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 248 LALSIDSSHGLSQNNLAV--------LEAREGHIERASTYLQAAAA---SSPYLYETHYN 296
LA+ +D G S L ++A + A + + H N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263
Query: 297 QAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+A + E+ ++ L P +L L +
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308
Score = 57.7 bits (139), Expect = 2e-09
Identities = 25/209 (11%), Positives = 54/209 (25%), Gaps = 28/209 (13%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM-VVTCFER 212
++ E L +L A+ + Y +
Sbjct: 69 SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128
Query: 213 ALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL------ 266
A+ L + W + V D A C AL+ + +S NL+++
Sbjct: 129 AVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQT 185
Query: 267 ---EAREGHIERASTYLQAAAASSPYLYETHYN--------QAVISNLAGDLQESYNIVK 315
+ H+ + + A + Y Q++ +
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245
Query: 316 KSLDLHPGHSYSWD-------ILRKLEQY 337
++ + S + D + + E Y
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESY 274
Score = 54.2 bits (130), Expect = 2e-08
Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 24/214 (11%)
Query: 124 NLAKIFEGLNNMPMS-VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
K + +K + +EA +G ++ A + L
Sbjct: 107 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166
Query: 183 GLYNAELFNNLALCC---------FYSQQYDMVVTCFERALSLALNENAADVWYNI---- 229
N NL++ +S+ V + A+ + + + WY +
Sbjct: 167 CK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAY 223
Query: 230 --SHVAIGISDTRL--AIQCLHLALSIDSSHGLSQ---NNLAVLEAREGHIERASTYLQA 282
+ G + A+ A +D + N A L E A
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316
AAA P E + + L K
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317
Score = 29.2 bits (65), Expect = 1.9
Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 8/146 (5%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
H Y + AL + + + E + + ++ + L
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKL 323
Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAR----EGH 272
+ H+ + + L + L N+ V+ +
Sbjct: 324 QSMLGSLRPA--HLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTT 381
Query: 273 IERASTYLQAAAASSPYLYETHYNQA 298
E+ + P YN
Sbjct: 382 EEKVPFTFGLVDSDGPCYAVMVYNVV 407
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 63.8 bits (155), Expect = 2e-11
Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 42/254 (16%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----------DQPEVAL 173
N A ++ + + Y + +Q E A
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158
Query: 174 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV---VTCFERALSLALNENAADVWYNI- 229
+ + + L+ N E + LA+ + + + +A+ L N + + +
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLA 216
Query: 230 ---SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286
+ + + + AL + A R+ ++A L+ A
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 287 SPYLYETHYNQAVI-------------------SNLAGDLQESYNIVKKSLDLHPGHSYS 327
P H L + + +KK+ + +
Sbjct: 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336
Query: 328 W----DILRKLEQY 337
+ +QY
Sbjct: 337 CSILASLHALADQY 350
Score = 55.3 bits (133), Expect = 1e-08
Identities = 28/230 (12%), Positives = 68/230 (29%), Gaps = 37/230 (16%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV-------------NHFYNDQPE 170
+ AK + + +++ K L+ IG + + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311
Query: 171 V------ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 224
+ A+ ++ + + + LA + QY+ F++ S L A
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371
Query: 225 VWY----NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
+ + N + D AI + I+ + L+
Sbjct: 372 LLHLRYGNFQLYQMKCEDK--AIHHFIEGVKINQKSREKEKMKDKLQK----------IA 419
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH--SYSW 328
+ + + E + A + L +Q++ ++ L+ + SW
Sbjct: 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469
Score = 54.2 bits (130), Expect = 2e-08
Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 22/231 (9%)
Query: 112 QPDGPFIQVSR-LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 170
PD +++V L L K+ E K + L++ + + + D+P+
Sbjct: 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264
Query: 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230
A+ ++ L+ NA L + C Y + V+ E +
Sbjct: 265 KAIELLKKALEYIPNNAYLHCQIGCC--YRAKVFQVMNLRENGMYGKRKL---------- 312
Query: 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
+ A+ L A + + + LA L A E A Y Q +
Sbjct: 313 -----LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367
Query: 291 YETHYNQAVISNLAGDLQESYN--IV--KKSLDLHPGHSYSWDILRKLEQY 337
N + + I + + ++ + KL++
Sbjct: 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418
Score = 43.4 bits (102), Expect = 8e-05
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 20/164 (12%)
Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSL-------ALNENAADVWYNISHVAIGIS 237
+ A + N LA Q + + C +A L + W N + V +
Sbjct: 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108
Query: 238 DTRLAIQCLH----------LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
+ I+S + L+ ERA + A
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168
Query: 288 PYLYETHYNQAVISNLAGDL---QESYNIVKKSLDLHPGHSYSW 328
P E A+ S + Q + + +++++ L+P + Y
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212
Score = 37.2 bits (86), Expect = 0.006
Identities = 17/151 (11%), Positives = 39/151 (25%), Gaps = 26/151 (17%)
Query: 139 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LFNNLAL 195
V + K + + + + H DQ E A ++++ L L
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379
Query: 196 CCFYSQ-QYDMVVTCFERALS----------------------LALNENAADVWYNISHV 232
Y D + F + L+ N ++ + ++ +
Sbjct: 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439
Query: 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263
+ A + L S + +
Sbjct: 440 QELNEKMQQADEDSERGLESGSLIPSASSWN 470
Score = 33.8 bits (77), Expect = 0.086
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 9/96 (9%)
Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA---------AASSPYLYETHY 295
N LA L+ +G E A L+ A + T
Sbjct: 39 FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG 98
Query: 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
N A + G L + V K + S + I
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 61.8 bits (150), Expect = 7e-11
Identities = 37/253 (14%), Positives = 84/253 (33%), Gaps = 29/253 (11%)
Query: 118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIA--CIGVNHFYNDQPEVALLF 175
+ + L K + + ++ + K+ ++ + G+ F + A+ +
Sbjct: 64 LMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY 123
Query: 176 YRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAAD 224
YR + + AE +A ++ +Q + + +AL + N
Sbjct: 124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183
Query: 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERAST 278
+ I+ A+ L AL + +S N+A R G + A
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243
Query: 279 YLQAAAA-----SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL-----HPGHSYSW 328
+ Q AA L + + + AG Q+++ +++ LD H + +
Sbjct: 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303
Query: 329 DILRKLEQYFSYL 341
L+ + +
Sbjct: 304 LFLQAVYKETVDE 316
Score = 57.5 bits (139), Expect = 2e-09
Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 17/178 (9%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQM----GLYN---AELFNNLALCCFYSQQYDMVVTCFE 211
+ +++ Q V++ + L + LY+ + +A + YD + E
Sbjct: 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206
Query: 212 RALSLALNENA----ADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSHGLSQNN 262
AL LA++ A NI++ D ++A++ A +
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266
Query: 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQ-AVISNLAGDLQESYNIVKKSLD 319
L+ + G ++A +++ Y + + + L
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324
Score = 43.7 bits (103), Expect = 4e-05
Identities = 19/179 (10%), Positives = 57/179 (31%), Gaps = 16/179 (8%)
Query: 121 SRLNLAKIFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC--IGVNHFYNDQPEVALL 174
S +A ++ + ++ + + L AI+ I ++ + ++A+
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243
Query: 175 FYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---NENAADVW 226
+++ ++ ++ L+ + Q E L ++ +++
Sbjct: 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303
Query: 227 YNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAREGHIERASTYLQAA 283
+ V D R L + + + A + H E+A+ + +
Sbjct: 304 LFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362
Score = 39.8 bits (93), Expect = 0.001
Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 10/149 (6%)
Query: 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILK-----RDATCMEAIACIGVNHFYNDQ 168
+ FI +S LN+A ++ + M+V++++ K + + + Q
Sbjct: 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276
Query: 169 PEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 223
+ A F L + ELF L + + L+
Sbjct: 277 TQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE 336
Query: 224 DVWYNISHVAIGISDTRLAIQCLHLALSI 252
+ + V A L
Sbjct: 337 ACARSAAAVFESSCHFEQAAAFYRKVLKA 365
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 60.1 bits (146), Expect = 3e-10
Identities = 24/230 (10%), Positives = 60/230 (26%), Gaps = 12/230 (5%)
Query: 118 IQVSRLNLAKIFE-GLNNMPMSVKYYKLILKRDATCM-----EAIACIGVNHFYNDQPEV 171
+Q+ L KI + G +V ++ L + AIA + +
Sbjct: 31 LQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQR 90
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
L + + + + ++ +A L +
Sbjct: 91 LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPEQVVAIASHDG 148
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291
+ + + L A + ++ + + ++R L A +P
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208
Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+ +Q ++ ++ L P + + LE
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV 258
Score = 58.6 bits (142), Expect = 9e-10
Identities = 20/218 (9%), Positives = 54/218 (24%), Gaps = 6/218 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA G + + L + +
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + S + + +
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNSGGKQALETVQRLL 296
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+Q ++ ++ L P + + LE
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETV 394
Score = 58.6 bits (142), Expect = 1e-09
Identities = 18/218 (8%), Positives = 51/218 (23%), Gaps = 6/218 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA + + L + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + + + +
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQRLL 364
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 365 PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+Q ++ ++ L P + LE
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESI 462
Score = 55.5 bits (134), Expect = 9e-09
Identities = 18/218 (8%), Positives = 52/218 (23%), Gaps = 6/218 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA + + L + +
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + + + +
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLL 194
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 195 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 254
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+Q ++ ++ L P + + LE
Sbjct: 255 LETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292
Score = 55.1 bits (133), Expect = 1e-08
Identities = 15/199 (7%), Positives = 46/199 (23%), Gaps = 2/199 (1%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + + L + + + AIA G + + L + +
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + + + +
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLL 398
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 399 PVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPA 458
Query: 304 AGDLQESYNIVKKSLDLHP 322
+ + +L
Sbjct: 459 LESIVAQLSRPDPALAALT 477
Score = 39.0 bits (91), Expect = 0.002
Identities = 13/148 (8%), Positives = 35/148 (23%), Gaps = 3/148 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA G + + L + +
Sbjct: 349 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + + +
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGRPALESIVAQL 466
Query: 244 QCLHLALSIDS-SHGLSQNNLAVLEARE 270
AL+ + H ++ L A +
Sbjct: 467 SRPDPALAALTNDHLVALACLGGRPALD 494
Score = 29.3 bits (66), Expect = 1.8
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
Query: 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
+A + L +D+ L + A E + A +P +
Sbjct: 21 TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDG 80
Query: 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+Q ++ ++ L P + + LE
Sbjct: 81 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETV 122
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 57.2 bits (139), Expect = 8e-10
Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 18/194 (9%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
+GV + + + AL + R L+ + E LA + + + + A
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--AR 68
Query: 219 NENAADVWYN--ISHVAIGISDTRL---------AIQCLHLALSIDSSHGLSQNNLAVLE 267
+ ++VA+ A+ L A ++ + ++
Sbjct: 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVY 128
Query: 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327
A G ++A L+ A A E A + G L E+ K+L+ P
Sbjct: 129 ALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Query: 328 W----DILRKLEQY 337
L +
Sbjct: 188 RVRYASALLLKGKA 201
Score = 55.2 bits (134), Expect = 4e-09
Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 16/166 (9%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+ L + + +YD +T FERAL N + Y ++ + + A++
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERAL--KENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 246 LHLALSIDSSHGLSQNNLAV-----------LEAREGHIERASTYLQAAAASSPYLYETH 294
++ + L+ E +G++E+A + L+ A +P H
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP---GHSYSWDILRKLEQY 337
+ ++ L G+ ++ +K++L L S ++ + +
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRL 167
Score = 48.3 bits (116), Expect = 8e-07
Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 14/211 (6%)
Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ- 181
L L L ++ ++ LK + EA+ + AL + L+
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 182 ----------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
+ L+ + ++ + A +N A +
Sbjct: 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE--RVNPRYAPLHLQRGL 126
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291
V + + A L AL+++ + ++ LA L G ++ A A +P
Sbjct: 127 VYALLGERDKAEASLKQALALEDTP-EIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185
Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322
+ A L G +E+ H
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 39.8 bits (94), Expect = 5e-04
Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
+ A + + A+ AL + + LA + + G + A
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 280 LQAAAASSPYLYETHYN-----------QAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
+ A +P + G L+++ +++K + ++P ++
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 329 ----DILRKLEQY 337
+ L +
Sbjct: 122 LQRGLVYALLGER 134
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 57.3 bits (139), Expect = 1e-09
Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 10/221 (4%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+++ L ++ + L E +G+ + A + +L++
Sbjct: 48 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA- 242
N + +Y + + + N + + + +
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY--QDDPNDPFRSLWLYLAEQKLDEKQAKE 165
Query: 243 --IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300
Q + + + L + + +ER + + +L ET++
Sbjct: 166 VLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKY 224
Query: 301 SNLAGDLQESYNIVKKSLDLHPG----HSYSWDILRKLEQY 337
GDL + + K ++ + H Y+ L L Q
Sbjct: 225 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
Score = 56.5 bits (137), Expect = 2e-09
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 9/176 (5%)
Query: 168 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 223
Q EV L ++L A+L + + F +A LA+ +
Sbjct: 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA--LAIRPDMP 77
Query: 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
+V+ + + A + L +D ++ + N + G + A L A
Sbjct: 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137
Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVK---KSLDLHPGHSYSWDILRKLEQ 336
P + + Q + + KS G + L + +
Sbjct: 138 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193
Score = 48.1 bits (115), Expect = 1e-06
Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 11/196 (5%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
L N + + + +L+ D T A G+ +Y + ++A Q
Sbjct: 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG-ISDTRL- 241
+ L L ++ + E +NI +G IS+ L
Sbjct: 142 PNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWG---WNIVEFYLGNISEQTLM 197
Query: 242 --AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
S+ + L G ++ A+ + A A++ + + H +
Sbjct: 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL 257
Query: 300 ISNLAGDLQE---SYN 312
+L G Q+ +
Sbjct: 258 ELSLLGQDQDDLAESD 273
Score = 35.0 bits (81), Expect = 0.026
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 261 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
L +E + R L + A + + Y + V+ + G + N ++L +
Sbjct: 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72
Query: 321 HPGHSYSW----DILRKLEQY 337
P + L + +
Sbjct: 73 RPDMPEVFNYLGIYLTQAGNF 93
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 57.1 bits (138), Expect = 2e-09
Identities = 28/212 (13%), Positives = 65/212 (30%), Gaps = 28/212 (13%)
Query: 158 CIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFE 211
G+ + A+ F+++ ++ AE F ++ +Y +Q +
Sbjct: 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167
Query: 212 RALSLA-----LNENAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSHGLSQ 260
+A + N + + + AI A S+ G +
Sbjct: 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL 227
Query: 261 NNLAVLEAREGHIERASTYLQAAAA------SSPYLYETHYNQAVISNLAGDLQESYNIV 314
N+ + + + E A Y + A A P L + ++ I G + +++
Sbjct: 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287
Query: 315 KKSLDL-----HPGHSYSWDILRKLEQYFSYL 341
K + + ++ L+ L
Sbjct: 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319
Score = 57.1 bits (138), Expect = 2e-09
Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 21/204 (10%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQM----GLYN---AELFNNLALCCFYSQQYDMVVTCFE 211
+ +++Y Q ++ + R+ ++ YN + + A +QY+ ++ F+
Sbjct: 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQ 208
Query: 212 RALSLA--LNENA--ADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQN 261
+A S+A + YNI S AI A+++ S +
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268
Query: 262 NLAVLEAREGHIERASTYLQAAAASSPYL----YETHYNQAVISNLAGDLQESYNIVKKS 317
+ + + G I++A Y A S Y + + L+G +E+
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328
Query: 318 LDLHPGHSYSWDILRKLEQYFSYL 341
L+ ++ D + +Y+
Sbjct: 329 LESKMLYADLEDFAIDVAKYYHER 352
Score = 55.6 bits (134), Expect = 8e-09
Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 24/221 (10%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILK-------RDATCMEAIACIGVNHFYNDQPEVALLFY 176
+++ + + S+ Y + + + ++ + N Q E A+ +
Sbjct: 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHF 207
Query: 177 RRLLQMG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVW 226
++ M N+ LC QY+ + F+RA+++ N +
Sbjct: 208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267
Query: 227 YNISHVAIGISDTRLAIQCLHLALSI-----DSSHGLSQNNLAVLEAREGHIERASTYLQ 281
+ I+ + + A + ++ D + L L E +
Sbjct: 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327
Query: 282 AAAASS--PYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
+ L + + A + + Q++ K +
Sbjct: 328 FLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
Score = 48.3 bits (115), Expect = 2e-06
Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 27/182 (14%)
Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIGISD 238
GL + ++Y + F++A S + A+ ++ +S +
Sbjct: 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ 158
Query: 239 TRLAIQCLHLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAA------AA 285
T ++ A I H + A E A ++ Q A
Sbjct: 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218
Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL------HPGHSYSW----DILRKLE 335
+ T YN + N +++ K+++ + P ++ I KL
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278
Query: 336 QY 337
+
Sbjct: 279 KI 280
Score = 37.9 bits (88), Expect = 0.004
Identities = 14/150 (9%), Positives = 42/150 (28%), Gaps = 11/150 (7%)
Query: 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC--IGVNHFYND 167
+ + N+ + ++ Y+K + + + A I H+
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278
Query: 168 QPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 222
+ + A ++ + + + F L + + F+ S L +
Sbjct: 279 KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338
Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSI 252
D +++ + + A +
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 53.6 bits (129), Expect = 3e-09
Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 2/97 (2%)
Query: 192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS 251
L FE + W ++ LAI L+ A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
+D LAV E + A L+A S P
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 47.1 bits (112), Expect = 5e-07
Identities = 11/115 (9%), Positives = 39/115 (33%), Gaps = 3/115 (2%)
Query: 112 QPDGPFIQV-SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 170
+ + P++ + + L N+ + ++ + +++ EA +G+ N++
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 225
+A++ + + + LA+ + + L +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW--LLSQPQYEQL 121
Score = 46.7 bits (111), Expect = 7e-07
Identities = 12/100 (12%), Positives = 26/100 (26%)
Query: 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285
+ +++ A + + +L + +A A L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
P H AV + + ++ L P +
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
Score = 32.8 bits (75), Expect = 0.041
Identities = 6/67 (8%), Positives = 17/67 (25%)
Query: 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLH 321
+ + ++ A+ +A P E + + + + + L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 322 PGHSYSW 328
P
Sbjct: 82 PKDIAVH 88
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 55.8 bits (135), Expect = 6e-09
Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 22/208 (10%)
Query: 113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYN 166
P G +S GL + + ++ ++ +A G
Sbjct: 2 PLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNA 61
Query: 167 DQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN--- 219
+ F++ +Q G + + +++ L FY Y+ + + L+LA +
Sbjct: 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121
Query: 220 -ENAADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGH 272
A N+ + + A C L++ S G + NL + +G
Sbjct: 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181
Query: 273 IERASTYLQAAAASSPYLYE--THYNQA 298
+ L Y +
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQEN 209
Score = 47.7 bits (114), Expect = 2e-06
Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 18/148 (12%)
Query: 154 EAIAC--IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDM 205
+ AC +G ++ + A+ ++ L++ + +NL + Q++
Sbjct: 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281
Query: 206 VVTCFERALSLA--LNENA--ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---- 257
++R L+LA L E A Y++ + + + AI+ + L+I G
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341
Query: 258 --LSQNNLAVLEAREGHIERASTYLQAA 283
+ +L + G ERA Y +
Sbjct: 342 EARACWSLGNAHSAIGGHERALKYAEQH 369
Score = 42.3 bits (100), Expect = 2e-04
Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIA--CIGVNHFYNDQPEVALLFYR 177
NL + L + ++++++ L + R+ E A +G +H + Q E A Y+
Sbjct: 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287
Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWY 227
R L + L A+ +L +++ + R L++A A +
Sbjct: 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347
Query: 228 NISHVAIGISDTRLAIQCLHLALSI 252
++ + I A++ L +
Sbjct: 348 SLGNAHSAIGGHERALKYAEQHLQL 372
Score = 36.5 bits (85), Expect = 0.009
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRD--ATCMEAIAC--IGVNHFYNDQPEVALLFYR 177
NL L + ++YK L L + +EA +C +G + + A+ ++
Sbjct: 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327
Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA 217
R L + L + A +L ++ + E+ L LA
Sbjct: 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 54.0 bits (130), Expect = 8e-09
Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
M L A N + + + + F + + + + +NI + + +
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSA-----VQDPHSRICFNIGCMYTILKNMTE 55
Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA----------------STYLQAAAA 285
A + +++ D ++ +L + + A Y
Sbjct: 56 AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115
Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP--GHSYSWDILRKLEQYFSY 340
+ E YN A + + +++ + + + HS + + + Y
Sbjct: 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
N + + ++ + + + IG + A + R +
Sbjct: 11 NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALS--------------LALNENAADVWYNI 229
+ A + + + +++YD+ + + AL L A +V YNI
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265
+ + + + A + L LA S+ S S+ + A+
Sbjct: 128 AFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 50.9 bits (123), Expect = 3e-08
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + YD + +++AL L + +A+ WYN+ + D AI+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 58
Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306
AL +D + NL ++G + A Y Q A P E YN GD
Sbjct: 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Query: 307 LQESYNIVKKSLDLHP 322
E+ +K+L+L P
Sbjct: 119 YDEAIEYYQKALELDP 134
Score = 41.2 bits (98), Expect = 6e-05
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282
A+ WYN+ + D AI+ AL +D + NL ++G + A Y Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
A P E YN GD E+ +K+L+L P + +W + K Y
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119
Score = 34.7 bits (81), Expect = 0.011
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
NL + + +++YY+ L+ D EA +G ++ + A+ +Y++ L++
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+AE + NL + YD + +++AL L+ +A+ WYN+ + D AI
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAI 123
Query: 244 QCLHLALSID 253
+ AL +D
Sbjct: 124 EYYQKALELD 133
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 53.5 bits (128), Expect = 6e-08
Identities = 16/205 (7%), Positives = 50/205 (24%), Gaps = 2/205 (0%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA + + L + +
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + + + + +
Sbjct: 257 PDQVVAIASNIGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 374
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW 328
+Q ++ ++ L P +
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAI 399
Score = 50.8 bits (121), Expect = 4e-07
Identities = 16/188 (8%), Positives = 45/188 (23%), Gaps = 6/188 (3%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
AIA + + L + + + ++ +A
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQA 523
Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
L + + + + + L A + ++ + + +
Sbjct: 524 H--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 581
Query: 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----D 329
+R L A + + +Q ++ ++ L P +
Sbjct: 582 QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641
Query: 330 ILRKLEQY 337
+ LE
Sbjct: 642 GKQALETV 649
Score = 50.4 bits (120), Expect = 5e-07
Identities = 19/218 (8%), Positives = 54/218 (24%), Gaps = 6/218 (2%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA + L + +
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L ++ A + + + +
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA--IASNGGGKQALETVQRLL 585
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 586 PVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+Q ++ ++ L P + + LE
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 683
Score = 50.4 bits (120), Expect = 6e-07
Identities = 18/218 (8%), Positives = 51/218 (23%), Gaps = 7/218 (3%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA G + L + +
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALE-TVQRLLPVLCQAHGLT 425
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ + L + + + +
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTH--GLTPAQVVAIASHDGGKQALETVQQLL 483
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 484 PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 543
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
+Q ++ ++ L P + + LE
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 581
Score = 46.9 bits (111), Expect = 6e-06
Identities = 18/188 (9%), Positives = 48/188 (25%), Gaps = 7/188 (3%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
AIA + + L + + + + ++ +A
Sbjct: 261 VAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQA 320
Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
L + + + + + L A + ++ + + +
Sbjct: 321 H--GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378
Query: 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD---- 329
+R L A +P + L +Q ++ ++ L P +
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGKQAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDG 437
Query: 330 ILRKLEQY 337
+ LE
Sbjct: 438 GKQALETV 445
Score = 46.6 bits (110), Expect = 9e-06
Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 6/188 (3%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
AIA G + + L + + + + ++ +A
Sbjct: 532 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 591
Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
L + + + + + L A + + ++ + + +
Sbjct: 592 H--GLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETV 649
Query: 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----D 329
+R L A +P + +Q ++ ++ L +
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNG 709
Query: 330 ILRKLEQY 337
+ LE
Sbjct: 710 GKQALETV 717
Score = 46.6 bits (110), Expect = 1e-05
Identities = 13/169 (7%), Positives = 42/169 (24%), Gaps = 2/169 (1%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
+ L + + + + ++ +A L +
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIA 671
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
+ + + + L A + ++ + + ++R L A +
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731
Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
P + +Q ++ ++ L P + +Q
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780
Score = 38.5 bits (89), Expect = 0.003
Identities = 42/300 (14%), Positives = 83/300 (27%), Gaps = 26/300 (8%)
Query: 63 SGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSR 122
SG+V G+ S K ++A+P + A + L T Q R
Sbjct: 12 SGLVPRGSSGSSMAARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVR 71
Query: 123 LNLAKIFEGLNNM------------------PMSVKYYKLILKRDATCMEAIACIGVNHF 164
+A+ E L ++V Y +I E I +G +
Sbjct: 72 STVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVG-KQW 130
Query: 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS---LALNEN 221
+ ALL L+ + + + V AL+ L L
Sbjct: 131 SGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPA 190
Query: 222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 281
+ + + + + L A + + ++ + + ++R L
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLC 250
Query: 282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
A P + +Q ++ ++ L P + + LE
Sbjct: 251 QAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETV 310
Score = 37.7 bits (87), Expect = 0.005
Identities = 16/213 (7%), Positives = 51/213 (23%), Gaps = 2/213 (0%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
+ + L + + + AIA + + L + +
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
+ + ++ +A L + + + + + +
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTQEQVVAIASNNGGKQALETVQRLL 721
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
L A + ++ + + ++R L A +P +
Sbjct: 722 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQA 781
Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
+Q ++ + L + +Q
Sbjct: 782 LETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814
Score = 28.5 bits (63), Expect = 4.0
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ 260
+ ++ + L ++ A + A+ L + C L+ + +
Sbjct: 918 ETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAI-- 975
Query: 261 NNLAVLEAREGHIERASTYLQAAAASSP 288
+ +A E + + S A AA +
Sbjct: 976 ASNGGKQALESIVAQLSRPDPALAALTN 1003
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 51.0 bits (122), Expect = 6e-08
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 5/124 (4%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
PE L + ++ N+E + L + Y + + +AL L A+++
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL--QLRGENAELYA 82
Query: 228 NISHV---AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 284
++ V T + AL++DS+ + LA + + +A Q
Sbjct: 83 ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142
Query: 285 ASSP 288
+
Sbjct: 143 DLNS 146
Score = 40.6 bits (95), Expect = 2e-04
Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 12/154 (7%)
Query: 133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 192
N ++ + ++ + E A +G + + + +LL YR+ LQ+ NAEL+
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83
Query: 193 LALCCFYSQQYDM---VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249
LA +Y M ++A LAL+ N ++ A ++ AI+
Sbjct: 84 LATVLYYQASQHMTAQTRAMIDKA--LALDSNEITALMLLASDAFMQANYAQAIELWQKV 141
Query: 250 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
+ ++S N ++E+ I A + +
Sbjct: 142 MDLNSPR---INRTQLVES----INMAKLLQRRS 168
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 49.5 bits (118), Expect = 5e-07
Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 17/151 (11%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLA 242
A + A+ ++Q + + + N +AA + + + A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 243 IQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAA------SSPYL 290
+Q + A + +G ++ + L + +A Q AAA
Sbjct: 96 VQYIEKASVMYVENGTPDTAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQA 154
Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLH 321
E + + E+ ++K ++
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Score = 48.4 bits (115), Expect = 1e-06
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 18/176 (10%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLIL----KRDATCMEAIACIGVNHFYNDQ-PEVALLFYRR 178
+ + L MP +V+Y + + A+A A+ Y++
Sbjct: 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQ 140
Query: 179 LLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYN 228
+ AEL + Q++D ++ S+
Sbjct: 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200
Query: 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA--VLEA-REGHIERASTYLQ 281
V + +D A +C+ + SI G +L+A E E+ +
Sbjct: 201 QVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
Score = 46.4 bits (110), Expect = 5e-06
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 17/150 (11%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLA 242
A+ F + Q+ V E+A + + + AA + + D A
Sbjct: 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-MEPLDLSKA 134
Query: 243 IQCLHLALS----IDSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASS------PYL 290
+ A + + ++ + L R+ + A+ LQ + P
Sbjct: 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194
Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDL 320
Y+ Q ++ D + V++S +
Sbjct: 195 YKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 49.6 bits (119), Expect = 6e-07
Identities = 23/197 (11%), Positives = 60/197 (30%), Gaps = 31/197 (15%)
Query: 154 EAIAC--IGVNHFYNDQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDM 205
+ A +G H+ A++ + + L + + ++NL + +++
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245
Query: 206 VVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---- 257
+++ L LA A Y++ + + D AI L+I
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305
Query: 258 --LSQNNLAVLEAREGHIERASTYLQAA-------------AASSPYLYETHYNQAVISN 302
+ +L G+ ++A + + + L + + +
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365
Query: 303 LAGDLQESYNIVKKSLD 319
+ + SL+
Sbjct: 366 TNNSIMSENTEIDSSLN 382
Score = 47.3 bits (113), Expect = 4e-06
Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 27/208 (12%)
Query: 148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQY 203
+A+C+ +A G + + F+ +Q+G + + +++ L FY Y
Sbjct: 5 MEASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 204 DMVVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG-- 257
+ L+LA A N+ + + + AI C L I
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123
Query: 258 ----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI 313
+ NL + +G P AV +E+ ++
Sbjct: 124 VGEARALYNLGNVYHAKGKSFGCPGPQD--VGEFPEEVRDALQAAVDF-----YEENLSL 176
Query: 314 VKKSLDLHPGHSYSW----DILRKLEQY 337
V D ++ + L +
Sbjct: 177 VTALGD-RAAQGRAFGNLGNTHYLLGNF 203
Score = 44.2 bits (105), Expect = 4e-05
Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 23/185 (12%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIA--CIGVNHFYNDQPEVALLFYR 177
NL L N +V ++ L++ ++ E A +G + + + E A +Y+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251
Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWY 227
+ L + L + A+ +L Q Y+ + + L++A N +
Sbjct: 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311
Query: 228 NISHVAIGISDTRLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGHI-ERASTYL 280
++ + + + A+ L I S ++ NL+ L+ G ++ +
Sbjct: 312 SLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371
Query: 281 QAAAA 285
Sbjct: 372 SENTE 376
Score = 41.1 bits (97), Expect = 3e-04
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 22/176 (12%)
Query: 167 DQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA--L 218
D + A+ FY L + L + F NL + + V E+ L +A
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Query: 219 NENA--ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEARE 270
+ A + N+ + I + + A + L + S +L
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280
Query: 271 GHIERASTYLQAAAA------SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
E+A Y A ++ G+ ++ + +K L++
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 47.6 bits (114), Expect = 2e-06
Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 27/206 (13%)
Query: 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDM 205
A+C+ +A G + + F+ +Q+G + + +++ L FY Y
Sbjct: 3 ASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61
Query: 206 VVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---- 257
+ L+LA A N+ + + + AI C L I
Sbjct: 62 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121
Query: 258 --LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVK 315
+ NL + +G P AV +E+ ++V
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEF--PEDVRNALQAAVDL-----YEENLSLVT 174
Query: 316 KSLDLHPGHSYSW----DILRKLEQY 337
D ++ + L +
Sbjct: 175 ALGD-RAAQGRAFGNLGNTHYLLGNF 199
Score = 43.0 bits (102), Expect = 9e-05
Identities = 19/141 (13%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFER 212
+G H+ A++ + + L + + ++NL + +++ +++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248
Query: 213 ALSLALN----ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNN 262
L LA A Y++ + + D AI L+I + +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308
Query: 263 LAVLEAREGHIERASTYLQAA 283
L G+ ++A + +
Sbjct: 309 LGNAYTALGNHDQAMHFAEKH 329
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 16/145 (11%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDATCMEAIAC----IGVNHFYNDQPEVALLFYR 177
NL L N +V ++ L++ ++ A +G + + + E A +Y+
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWY 227
+ L + L + A+ +L Q Y+ + + L++A +
Sbjct: 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307
Query: 228 NISHVAIGISDTRLAIQCLHLALSI 252
++ + + + A+ L I
Sbjct: 308 SLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 31.8 bits (73), Expect = 0.30
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIAC--IGVNHFYNDQPEVALLFYR 177
NL + L + +YYK L+L R +EA +C +G + E A+ ++
Sbjct: 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287
Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA 217
+ L + L + +L +D + E+ L ++
Sbjct: 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 43.9 bits (104), Expect = 6e-06
Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
+L G N L L +Q+D + A L + + W +
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA--LDFDPTYSVAWKWLGK 61
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAR 269
G D A Q L+ S G Q L V R
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/83 (15%), Positives = 23/83 (27%)
Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301
+ L L+ + + L + L A + A +L+AA P
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 302 NLAGDLQESYNIVKKSLDLHPGH 324
GD + + L
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSR 86
Score = 30.4 bits (69), Expect = 0.26
Identities = 10/62 (16%), Positives = 17/62 (27%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
Q + AL R L + + L +E L+ A + V
Sbjct: 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93
Query: 228 NI 229
+
Sbjct: 94 EL 95
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 46.2 bits (109), Expect = 7e-06
Identities = 33/283 (11%), Positives = 86/283 (30%), Gaps = 17/283 (6%)
Query: 72 ASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLA----- 126
A++GG Q + P P ++ S D F+ + +
Sbjct: 10 AAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDR 69
Query: 127 KIFEGLNNMPMSVKYYKL--ILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
+ ++ +P + + I+ D + +++ E A R +++
Sbjct: 70 AEWADIDPVPQNDGPNPVVQIIYSDKFR-DVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 185 YNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
N +++ + Q+ + + VW++ + + D +
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQEL 186
Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET-HYNQAVISN 302
+ + L+ D+ + + + + + Y+ + VISN
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246
Query: 303 L-----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340
L+ + + L P + +W+ L+ + Q
Sbjct: 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 289
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 44.6 bits (106), Expect = 1e-05
Identities = 14/156 (8%), Positives = 39/156 (25%), Gaps = 25/156 (16%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLA 242
+ L + ++D F+ A + + + V + A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 243 IQCLHLALSI-----DSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASSPYLYE--- 292
+C + + S +A + G + A + + +
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV----YAQQAD 141
Query: 293 -------THYNQAVISNLAGDLQESYNIVKKSLDLH 321
++ +L E+ ++ D+
Sbjct: 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177
Score = 43.4 bits (103), Expect = 3e-05
Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 17/164 (10%)
Query: 159 IGVNHFYNDQPEVALLFYRRLLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFER 212
+G + + D+ + A ++ L Q + + + + +D CF
Sbjct: 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Query: 213 ALSLA-----LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQN 261
L A+ Y ++ VA+ D A Q +L + +
Sbjct: 92 ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151
Query: 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
L L +E ++ A + A L ++ +++ L G
Sbjct: 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNG 195
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 42.4 bits (101), Expect = 2e-05
Identities = 10/85 (11%), Positives = 33/85 (38%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
++ + + +Q+ ++ + + ++Y+ V C+ +++ +E DVW +
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84
Query: 232 VAIGISDTRLAIQCLHLALSIDSSH 256
I + + ++ H
Sbjct: 85 ALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 37.8 bits (89), Expect = 6e-04
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL---- 241
N E + + + + Y + FE+A+ L+ + W G + L
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLM-----KGKALYNLERYE 57
Query: 242 -AIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERA 276
A+ C + +++ D + A E
Sbjct: 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 68/320 (21%), Positives = 88/320 (27%), Gaps = 126/320 (39%)
Query: 66 VRPGTLASRGGTLEQSLKTP-----------------------RTAKSARPLTSQAARTI 102
RP TL+ G+LE L P A P T+ A
Sbjct: 6 TRPLTLSH--GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP-TTPAELVG 62
Query: 103 R-LGTASMLSQPD--GPFIQVSRLNLAKIFE----GLNN-------MPMSVK-------- 140
+ LG S L +P G F QV L L FE N+ +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCL-TEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 141 ----YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 196
Y A I ++ + AL R + G NA+L A+
Sbjct: 122 LIKNYIT-------------ARIMAKRPFDKKSNSALF---RAVGEG--NAQLV---AI- 159
Query: 197 CF----YSQQYDMVVTCFE--RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL 250
F + Y FE R L Y HV +G A L
Sbjct: 160 -FGGQGNTDDY------FEELRDL------------YQTYHVLVGDLIKFSAETLSELIR 200
Query: 251 SIDS-----SHGLSQNNLAVLEAREGHIERAST-YLQAAAASSPYLYETHYNQAVISNLA 304
+ + GL N L LE YL + S P L
Sbjct: 201 TTLDAEKVFTQGL--NILEWLENPS---NTPDKDYLLSIPISCP--------------LI 241
Query: 305 GDLQ-ESYNIVKKSLDLHPG 323
G +Q Y + K L PG
Sbjct: 242 GVIQLAHYVVTAKLLGFTPG 261
Score = 44.3 bits (104), Expect = 6e-05
Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 54/224 (24%)
Query: 97 QAARTIRLGTASML--SQPDGP------FIQVSRLNLAKIFEG----LNN--------MP 136
+ + IR ++M+ + DG F +++ + + F L+
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 137 MSVKYYKLILKR-----DATCM-----E--AIACI-GVNHFYNDQPE--VALLFYR-RLL 180
M ++ + + DAT E A+A + V E V ++FYR +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-----ESLVEVVFYRGMTM 1793
Query: 181 QMGLYNAELFN-NLALCCFYSQQYDMVVTCFERALSLALNENAAD----VW---YNISHV 232
Q+ + EL N + + + + + AL + V YN+ +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGR--VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV---LEAREGHI 273
+ A+ + L+ + L LE EGH+
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 42.1 bits (100), Expect = 5e-05
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIAC--IGVNHFYNDQPEVALLFYR 177
NL L N +V ++ L++ ++ E IA +G + + + E A +Y+
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 178 RLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWY 227
+ L + L + A+ +L Q Y+ + + L++A +
Sbjct: 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 133
Query: 228 NISHVAIGISDTRLAIQCLHLALSI 252
++ + + + A+ L I
Sbjct: 134 SLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 40.6 bits (96), Expect = 2e-04
Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 18/151 (11%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVAIGISDTRLA 242
F NL + + V E+ L +A + A + N+ + I + + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 243 IQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296
+ L + S +L E+A Y A + L +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIG 127
Query: 297 QA-VISNLA------GDLQESYNIVKKSLDL 320
+ +L G+ ++ + +K L++
Sbjct: 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 33.7 bits (78), Expect = 0.041
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIAC--IGVNHFYNDQPEVALLFYR 177
NL + L + +YYK L+L R +EA +C +G + E A+ ++
Sbjct: 54 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113
Query: 178 RLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA 217
+ L + L + +L +D + E+ L ++
Sbjct: 114 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 43.5 bits (102), Expect = 7e-05
Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 18/158 (11%)
Query: 129 FEG-LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR----LLQMG 183
+E L + + + +++ K + G +F + A++ Y + L
Sbjct: 243 YEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY 302
Query: 184 LYNAE-----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232
+ + F NLA+C ++Y V C ++A L L+ Y
Sbjct: 303 GLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA--LGLDSANEKGLYRRGEA 360
Query: 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270
+ +++ A L ++ + ++ +++ + +
Sbjct: 361 QLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 40.9 bits (96), Expect = 7e-05
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 202 QYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ 260
V +E+A++ L + A+ + + + + R A L + +H +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 261 NNLAVLEAREGHIERA-STYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
A++ G E+ L+ A +S Y QA I A L E
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA-ILFYADKLDE 113
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 168 QPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 224
A+ +Y + + GL AE + L +Y + N A
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256
V+Y + +G ++ L ++ S
Sbjct: 65 VFYAMVLYNLG--RYEQGVELLLKIIAETSDD 94
Score = 34.7 bits (80), Expect = 0.009
Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 3/86 (3%)
Query: 242 AIQCLHLALSI---DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298
A+ A++ L G +A L P A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 299 VISNLAGDLQESYNIVKKSLDLHPGH 324
++ G ++ ++ K +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDD 94
Score = 29.7 bits (67), Expect = 0.50
Identities = 5/55 (9%), Positives = 18/55 (32%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 222
+ A ++ + L A+ + +Y+ V + ++ ++
Sbjct: 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 29.7 bits (67), Expect = 0.51
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 271 GHIERASTYLQAAAA---SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327
G +A Y + A A L E + G+ +++ ++ + P H
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 328 W 328
Sbjct: 64 R 64
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 42.7 bits (100), Expect = 8e-05
Identities = 25/161 (15%), Positives = 49/161 (30%), Gaps = 18/161 (11%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIG-ISDTRL 241
+ C V E A+ + + A+ + + + + D
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136
Query: 242 AIQCLHLALS----IDSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
AI C LA S ++ A L+A +G AS SS + +
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196
Query: 296 N------QAVISNLA-GDLQESYNIVKKSLDLHPGHSYSWD 329
+ + + LA D + +++ P + S +
Sbjct: 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237
Score = 42.7 bits (100), Expect = 9e-05
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 17/150 (11%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIGISDTRLA 242
A+L A ++ ++ F +A A + + ++ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 243 IQCLHLALSIDSSHGL------SQNNLA-VLEAREGHIERASTYLQAAAA------SSPY 289
+ L A+ I + G + L +LE +A + A S
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLD 319
+ A + L G E+ +I K +
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIK 186
Score = 33.1 bits (75), Expect = 0.12
Identities = 21/158 (13%), Positives = 42/158 (26%), Gaps = 26/158 (16%)
Query: 124 NLAKIFEGLNNMPMSVKYYKLILK---------RDATCMEAIACIGVNHFYNDQ--PEVA 172
K F+ N +V + ++ R A + ND A
Sbjct: 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG----EILENDLHDYAKA 137
Query: 173 LLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----N 221
+ Y + + + F A QY + + + ++ +
Sbjct: 138 IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197
Query: 222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS 259
D + + +D A + L S D + S
Sbjct: 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAE---------------LFNNLALCCFYSQQYD 204
G +F + + ALL Y++++ Y + NLA+C Q +
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213
Query: 205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264
+ +A L L+ N + ++D LA L + ++ ++ LA
Sbjct: 214 AAIESCNKA--LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
Query: 265 VLEAR 269
V + R
Sbjct: 272 VCQQR 276
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+ LA + FE + + + +Y++ + + T AI
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 246 LHLALSIDSSHGLSQ--NNLAVLEAREGHIERA 276
+ + G + + L + + +E
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96
Score = 35.3 bits (82), Expect = 0.004
Identities = 7/64 (10%), Positives = 21/64 (32%)
Query: 261 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
LA + + RA + + P T+Y+ + ++ + + +++
Sbjct: 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
Query: 321 HPGH 324
Sbjct: 71 AREE 74
Score = 31.5 bits (72), Expect = 0.085
Identities = 7/76 (9%), Positives = 19/76 (25%)
Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278
+ Y ++ + + A+ + D + + +L L R + A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 279 YLQAAAASSPYLYETH 294
+
Sbjct: 63 TYAQGIEVAREEGTQK 78
Score = 26.1 bits (58), Expect = 6.3
Identities = 5/50 (10%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
T Y A + + + ++ ++ P + ++ + +L++
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 39.1 bits (92), Expect = 3e-04
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
G + E A+ FY + +++ NA F N A Y V ERA+ ++
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--ID 76
Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
+ + + ++ A+ AL +D + ++NL + E +
Sbjct: 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Score = 31.8 bits (73), Expect = 0.11
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
AE + ++ V + +A+ LN A + N + + + A+Q
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAI--ELNPANAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
A+ ID ++ + + + + A Y + A
Sbjct: 69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 38.9 bits (92), Expect = 4e-04
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 217 ALN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
A++ N+A+ WYN+ + D AI+ AL +D ++ + NL ++G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKKSLDLHPGHSYSW 328
A Y Q A P E YN GD E Y K+L+L P ++ +
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDPNNAEAK 114
Score = 38.9 bits (92), Expect = 4e-04
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+AE + NL + YD + +++AL L+ N A+ WYN+ + D AI+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296
AL +D ++ + NL ++G + A Y Q A P E N
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 35.4 bits (83), Expect = 0.005
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
+ A+ +Y++ L++ NAE + NL + YD + +++AL L+ N A+ WY
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWY 81
Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265
N+ + D AI+ AL +D ++ ++ NL
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 39.6 bits (92), Expect = 8e-04
Identities = 19/155 (12%), Positives = 37/155 (23%), Gaps = 19/155 (12%)
Query: 133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ-------MGLY 185
+ + ++ + G + F ++ E A+ Y + LY
Sbjct: 159 DETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 186 NAE----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
N+A C ++YD + L E +
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV--LTEEEKNPKALFRRGKAKAE 276
Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270
+ A A + L L +E
Sbjct: 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 39.4 bits (91), Expect = 0.001
Identities = 14/138 (10%), Positives = 43/138 (31%), Gaps = 18/138 (13%)
Query: 133 NNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQM---- 182
+ + K +L + T + I + N + + + ++L+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 183 ---GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWYNISHVAIG 235
++ ++ N A + +Y+ + +A+ ++ N+ ++Y
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248
Query: 236 ISDTRLAIQ-CLHLALSI 252
+ I+ A
Sbjct: 249 LEYEEAEIEDAYKKASFF 266
Score = 37.4 bits (86), Expect = 0.004
Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 17/157 (10%)
Query: 181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD----VWYNISHVAIGI 236
+ + F + + ++Y + L Y ++ +
Sbjct: 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK 128
Query: 237 SDTRLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
D I L L+ + +N +A + A G++++ + L
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 291 YE-------THYNQAVISNLAGDLQESYNIVKKSLDL 320
++ YN A L +ES V K++++
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 38.2 bits (88), Expect = 0.003
Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Query: 201 QQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254
+ + + A E A S + + +++
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 255 SHGLS--QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312
+ LS AV +G + + + + + + + G +E+ +
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD 331
Query: 313 IVKKSLDLHPGHSY 326
+ +L PG +
Sbjct: 332 AYLTAFNLRPGANT 345
Score = 33.9 bits (77), Expect = 0.072
Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 5/101 (4%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
+ ++ A+ + D + L + + + + V R A
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTG--IDLEMSWLN-YVLLGKVYEMKGMNREAADA 332
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286
A ++ + + + YL AS
Sbjct: 333 YLTAFNLRPGANTLYWIENGI--FQTSVPYVVPYLDKFLAS 371
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 36.5 bits (85), Expect = 0.003
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
G + E A + Y + +++ N +NN A F +++ V E+A+ +
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74
Query: 220 ENAADVWYNISHVAIGISDTRL-----AIQCLHLALSID 253
A + G + + A+Q H +LS
Sbjct: 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113
Score = 32.3 bits (74), Expect = 0.086
Identities = 18/151 (11%), Positives = 50/151 (33%), Gaps = 33/151 (21%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
A +L + + ++ +++A+ L+ + + N + V +Q
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
A+ + E R + A +A A + + + AV
Sbjct: 65 CEKAVEVGR------------ETRADYKLIAKAMSRAGNA---FQKQNDLSLAV------ 103
Query: 306 DLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
+ ++ +SL ++++K+++
Sbjct: 104 ---QWFH---RSLSEFRDP----ELVKKVKE 124
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 35.7 bits (83), Expect = 0.005
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
+ AL Y + ++ N N A F Y+ E+A+ +
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80
Query: 230 SHVAIGISDTRL-----AIQCLHLALSID 253
++ IG S + AI + +L+
Sbjct: 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109
Score = 33.4 bits (77), Expect = 0.033
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 33/151 (21%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
A L + + +D + +++A L+ N + V D +
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKA--KELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
A+ + E RE + + A Y + + Y E Y A+
Sbjct: 61 CEKAIEVGR------------ENREDYRQIAKAYARIGNS---YFKEEKYKDAI------ 99
Query: 306 DLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
Y KSL H + D+L+K +Q
Sbjct: 100 ---HFY---NKSLAEHR----TPDVLKKCQQ 120
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 34.7 bits (81), Expect = 0.005
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
AE + NL + YD + +++AL L + N A+ WYN+ + D AI+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 247 HLALSIDSSHGLSQNNLAV 265
AL +D ++ ++ NL
Sbjct: 67 QKALELDPNNAEAKQNLGN 85
Score = 29.3 bits (67), Expect = 0.50
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 217 ALN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
A++ N+A+ WYN+ + D AI+ AL +D ++ + NL ++G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 276 ASTYLQAAAASSPYLYETHYN 296
A Y Q A P E N
Sbjct: 62 AIEYYQKALELDPNNAEAKQN 82
Score = 27.7 bits (63), Expect = 1.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
NAE + NL + YD + +++AL L+ N A+ N+
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.010
Identities = 51/284 (17%), Positives = 93/284 (32%), Gaps = 95/284 (33%)
Query: 80 QSLKTPRTAKSARPLTSQAARTIRLG----------TASMLSQ------PDGP--FIQVS 121
+ L T R + L++ I L S+L + D P + +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 122 RLNLAKIFEGLNNMPMSVKYYKLI-LKRDATCMEAIACIGVNHFYNDQ-PEVALLFYRRL 179
L+ I E + + + +K + + T +E+ N P YR
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--------SLNVLEPAE----YR-- 372
Query: 180 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDT 239
++F+ L++ F + LSL +W+++ SD
Sbjct: 373 --------KMFDRLSV--F---PPSAHIP--TILLSL--------IWFDVIK-----SDV 404
Query: 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
+ + LH S L + +E I S YL+ Y H +++
Sbjct: 405 MVVVNKLH-----KYS-------LVEKQPKESTISIPSIYLE-LKVKLENEYALH--RSI 449
Query: 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR-KLEQYF-SYL 341
+ + YNI K S D++ L+QYF S++
Sbjct: 450 V--------DHYNIPKT--------FDSDDLIPPYLDQYFYSHI 477
Score = 29.8 bits (66), Expect = 1.6
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 21/84 (25%)
Query: 117 FIQVSRLNLAKI---------FEGLNNMPMSVKYYK-LILKRDATCMEAIACIGVNHFYN 166
F++ KI + N +K+YK I D + I F
Sbjct: 502 FLE------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLP 553
Query: 167 DQPEVALLF--YRRLLQMGLYNAE 188
+ E L+ Y LL++ L +
Sbjct: 554 -KIEENLICSKYTDLLRIALMAED 576
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 34.5 bits (80), Expect = 0.013
Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
+ AL Y +++ +N L++N + Y + + L + +
Sbjct: 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRK 78
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
+ ++ A + L ++++ + L +EAR
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 35.7 bits (82), Expect = 0.014
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 3/182 (1%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
G F + A Y R + A + N ALC QQ + + RAL L+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LD 68
Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
+ + + + + AI L A S+ L+ + R +R ++
Sbjct: 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128
Query: 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339
+ L ++ + + + +L+E + D + I K ++Y +
Sbjct: 129 EERRIHQESEL-HSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMA 187
Query: 340 YL 341
+
Sbjct: 188 DM 189
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 35.2 bits (80), Expect = 0.029
Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 3/156 (1%)
Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
+ +L Y E++ + Q + ER + ++ + + +
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAV 261
Query: 236 ISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292
D + + L + N ++ +E +
Sbjct: 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHV 321
Query: 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
Y + G YNI L HP +
Sbjct: 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 34.0 bits (78), Expect = 0.039
Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 18/126 (14%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAE----------------LFNNLALCCFYSQQY 203
G F ++ A++ Y+ L ++ E NLA C ++ Y
Sbjct: 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 104
Query: 204 DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263
+ + L +++N Y + + A + L+ A S++ ++ +N+
Sbjct: 105 PKAIDHASKV--LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162
Query: 264 AVLEAR 269
+ +
Sbjct: 163 ELCVNK 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 33.5 bits (77), Expect = 0.044
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
A+ Y + L + N +N A S Q++ E A ++ + W +
Sbjct: 30 AIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA--TVVDPKYSKAWSRLGL 87
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
++D + A + + + + G LE + IE A+ + A
Sbjct: 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIEEANRGAEPPADDVD 143
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 35.0 bits (80), Expect = 0.044
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 21/115 (18%)
Query: 178 RLLQMGLYNA--------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
R +Y+A F LA + +Y V +A N+ W +
Sbjct: 1204 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 1256
Query: 230 SHVAIGISDTRLAIQC-LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
+ + RLA C LH+ + D L G+ E T L+AA
Sbjct: 1257 CFACVDGKEFRLAQMCGLHIVVHADELEELIN-----YYQDRGYFEELITMLEAA 1306
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 33.3 bits (77), Expect = 0.10
Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 29/178 (16%)
Query: 172 ALLFYRRLLQM-----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSL---ALNE 220
A +R L++ G + A+ NNLAL C +Y+ V ++RAL + L
Sbjct: 130 AEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189
Query: 221 N---AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL---------SQNNLAVLEA 268
+ A N++ + + A L+ + E
Sbjct: 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 249
Query: 269 REGHIERASTYLQAAAA------SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
+G + +++ + SP + T N + G + + + + ++
Sbjct: 250 CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 31.5 bits (72), Expect = 0.13
Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 2/111 (1%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
G +F A+ Y +++ +A ++N A + + +A + +
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA--IEKD 68
Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270
N + + I + + A++ L A + D+ + + +
Sbjct: 69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 32.6 bits (74), Expect = 0.20
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 178 RLLQMGLYNA--------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
R +Y+A F LA + +Y V +A N+ W +
Sbjct: 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 205
Query: 230 SHVAIGISDTRLAIQC-LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
+ + RLA C LH+ + D L + R G+ E T L+AA
Sbjct: 206 CFACVDGKEFRLAQMCGLHIVVHADELEELIN----YYQDR-GYFEELITMLEAA 255
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 32.2 bits (73), Expect = 0.22
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 178 RLLQMGLYNA--------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
R +Y+A F LA + +Y V +A N+ W +
Sbjct: 131 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 183
Query: 230 SHVAIGISDTRLAIQC-LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
+ + RLA C LH+ + D L + R G+ E T L+AA
Sbjct: 184 CFACVDGKEFRLAQMCGLHIVVHADELEELIN----YYQDR-GYFEELITMLEAA 233
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 30.3 bits (69), Expect = 0.35
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
A+ Y ++ +A+L++N A C ++ + + E + L + +
Sbjct: 35 AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC--IQLEPTFIKGYTRKAA 92
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263
+ D A+ AL +DSS + +
Sbjct: 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.37
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 38 TSLKT-AAVTAPALTSRPRTE 57
SLK A +APAL + E
Sbjct: 27 ASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 0.57
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 78 LEQSLK--TPRTAKSARP-LTSQAARTI 102
L+ SLK +A P L +A T+
Sbjct: 25 LQASLKLYADDSA----PALAIKA--TM 46
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 31.3 bits (72), Expect = 0.38
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 172 ALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--- 220
+YRR L++ A+ NNLA C +Y T ++ L+ A +
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205
Query: 221 ----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS---SH---GLSQNNLAVLEARE 270
+ +W + R + + + +L L R+
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265
Query: 271 GHIERASTYLQAAAA 285
G +E A T A+
Sbjct: 266 GKLEAAHTLEDCASR 280
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 31.1 bits (70), Expect = 0.44
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 240 RLAIQCL-HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS------PYLYE 292
RLA L L S ++ + L + +G + R+ +Q + Y
Sbjct: 35 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94
Query: 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324
+ Q+ I G LQ ++ +K+ L
Sbjct: 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126
Score = 27.6 bits (61), Expect = 5.7
Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL------SQNNLAV 265
A N W NI+ I + + A L S L + L
Sbjct: 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301
Query: 266 LEAREGHIERASTYLQAA 283
L + G A L A
Sbjct: 302 LYWQAGRKSDAQRVLLDA 319
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 30.0 bits (68), Expect = 0.60
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
A+ FY + +++ NA + N +L ++ Y + RA + L++ +Y +
Sbjct: 32 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA--IELDKKYIKGYYRRAA 89
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA--REGHIERA 276
+ + R A++ + + ++ ++ ERA
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller,
alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB:
2pm6_A 3mzl_B
Length = 399
Score = 30.6 bits (68), Expect = 0.79
Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 154 EAIACIGVNHFYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 211
I + + E+ + R+ + G L + D V + +
Sbjct: 231 FISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSL-----TLYLAAGSLDKVASIWL 285
Query: 212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE---- 267
++ D + +++ ++ S+ Q LE
Sbjct: 286 SEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINL 345
Query: 268 -AREGHIERASTYLQAAAASSP 288
G+ E A+ +L + + +
Sbjct: 346 TTSTGNFELATEFLNSLPSDNE 367
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 29.7 bits (67), Expect = 0.79
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 9/118 (7%)
Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
+A+ + E + R N L+ N++ C
Sbjct: 36 DALTRLDTLILREKPGEPEWVELDRK------NIPLYANMSQCYLNIGDLHEAEETSSEV 89
Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEARE 270
L E + + I A + L L L ++ + + ++ R
Sbjct: 90 --LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 29.2 bits (66), Expect = 0.79
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 216
A+ Y +L+ N ++N A+ +Y + ++ L
Sbjct: 23 AVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 30.5 bits (69), Expect = 0.87
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHL 248
N+ C + V A L ++ + Y + G+ + A+ L
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEA--LEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
Query: 249 ALSIDSSHGLSQNNLAVLEAR 269
A I Q L ++ +
Sbjct: 333 AQEIAPEDKAIQAELLKVKQK 353
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 28.8 bits (65), Expect = 1.1
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
A Y R + A + N ALC QQ + + RA L L+ + + +
Sbjct: 28 AAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA--LELDGQSVKAHFFLGQ 85
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 276
+ + AI L A S+ L + + A
Sbjct: 86 CQLEMESYDEAIANLQRAYSLAKE-----QRLNFGDDIPSALRIA 125
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 211
C + +G Y +Q A +YR Q+ N + +N LA+ + + +
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 212 RAL 214
R++
Sbjct: 211 RSI 213
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 28.0 bits (63), Expect = 2.6
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
A+ Y ++ NA L++N A C ++ + + + L+ + +
Sbjct: 32 AMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAA 89
Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263
+ + + A + AL +D S+ ++ +
Sbjct: 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 27.9 bits (61), Expect = 3.0
Identities = 16/143 (11%), Positives = 41/143 (28%), Gaps = 26/143 (18%)
Query: 160 GVNHFYNDQPEVALLFYRRLLQM------------GLYNAELFNNLALCCFYSQQYDMVV 207
+ + A RR +++ ++A LA + +D +
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 208 TCFERALSLA-----LNENAADVWYN------ISHVAIGISDTRLAIQCLHLALSIDSSH 256
++AL LN++ +W + ++ +G A+ + +
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE--AMPEFKKVVEMIEER 135
Query: 257 GLSQNNL-AVLEAREGHIERAST 278
++E I +
Sbjct: 136 KGETPGKERMMEVAIDRIAQLGA 158
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 26.9 bits (60), Expect = 3.4
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 172 ALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSL 216
AL LQ + E + + + + ++ A+ L
Sbjct: 19 ALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 28.5 bits (64), Expect = 4.1
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254
A L +E+A W + ++ + +LAI+ A ++S
Sbjct: 668 LTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLES 712
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 27.3 bits (60), Expect = 5.7
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 201 QQYDMVVTC--FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254
++D+ + + AL A N + W + A+ + LA S D
Sbjct: 10 IRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDK 65
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 27.7 bits (62), Expect = 6.6
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 16/50 (32%)
Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337
P LY +L+ D E+YN++ P ++L+ L+Q
Sbjct: 408 PLLY----------DLSKDPGENYNLLGGVAGATP------EVLQALKQL 441
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,935,893
Number of extensions: 288122
Number of successful extensions: 1309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 287
Length of query: 341
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,077,219
Effective search space: 1007073093
Effective search space used: 1007073093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)