BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16592
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pip1 PE=1 SV=2
Length = 107
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 68 PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
PRF ++K+NAVALW WD+ ++ CAICRNH+MD CI CQA D CTVAW
Sbjct: 19 PRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQAN--TDSAAAQECTVAWG 72
>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1
Length = 108
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 62 SEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVA 121
S D RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA A CTVA
Sbjct: 14 SSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVA 71
Query: 122 WA 123
W
Sbjct: 72 WG 73
>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2
Length = 108
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA Q CTVAW
Sbjct: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73
>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1
Length = 108
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA Q CTVAW
Sbjct: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73
>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1
Length = 108
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA Q CTVAW
Sbjct: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73
>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1
Length = 110
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
RF V+K++AVALW+WD+ ++ CAICRNH+MD CI CQA A + CTVAW
Sbjct: 23 RFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQA--AGLKDECTVAWG 75
>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1
Length = 104
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAF 124
+F V+++NAVALW WD+ ++ CAICRNH+MD CI CQA A + CTVAW
Sbjct: 17 KFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEE--CTVAWGI 70
>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
Length = 118
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
RF ++K++AVALW+WD+ ++ CAICRNH+MD CI CQA Q CTVAW
Sbjct: 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 83
>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1
Length = 115
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
RF ++K++AVALW+WD+ ++ CAICRNH+MD CI C A Q CTVAW
Sbjct: 28 RFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLAN--QASATSEECTVAWG 80
>sp|Q08273|RBX1_YEAST RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HRT1 PE=1 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAF 124
RF ++K+ AVA WSWD+ ++ CAICRNH+M+ CI CQ + D N C AW
Sbjct: 34 RFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTD--TDNECVAAWGV 87
>sp|Q9WTZ1|RBX2_MOUSE RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1
Length = 113
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 5/54 (9%)
Query: 70 FTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
F+++K+NAVA+WSWD++ +TCAICR +MD C+ CQA + Q++ C V W
Sbjct: 30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQED-----CVVVWG 78
>sp|Q9UBF6|RBX2_HUMAN RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1
Length = 113
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 5/54 (9%)
Query: 70 FTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
F+++K+NAVA+WSWD++ +TCAICR +MD C+ CQA + Q++ C V W
Sbjct: 30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQED-----CVVVWG 78
>sp|Q9NHX0|RBX1B_DROME RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2
Length = 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQA--RDAQDEPPPNGCTVAWA 123
RF V+K+ A A+W WD+ ++ CAICRNH+M+ CI CQA QDE CTVAW
Sbjct: 36 RFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQADPNANQDE-----CTVAWG 87
>sp|A0Q2B3|HEM1_CLONN Glutamyl-tRNA reductase OS=Clostridium novyi (strain NT) GN=hemA
PE=3 SV=1
Length = 411
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 28 MRKLQIQELINEELQKMKEDRELNRTYKKVLDLRSEYPDV 67
M +L ++ LINEEL+++ NRTY V+DL E+P +
Sbjct: 190 MGRLALKHLINEELEEI---FVANRTYNNVIDLLKEFPKI 226
>sp|Q54L48|APC11_DICDI Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum
GN=anapc11 PE=3 SV=1
Length = 87
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 75 FNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNG 117
+N V+ W WD++ E C ICR C+ C+ D PP G
Sbjct: 9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKI-PGDDCPPVWG 50
>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana
GN=APC11 PE=1 SV=2
Length = 84
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICR 94
+ + +++AVA W+WD ETC ICR
Sbjct: 2 KVKILRWHAVASWTWDAQDETCGICR 27
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1 MAKKSEPFHKKPKTPSAQTFSRSTWPIMRKLQIQELINEELQKMKEDRELNRTYKKVLD 59
M K + PFH PS Q + W +M+ + + E +N E K + + + V D
Sbjct: 307 MGKDNVPFHTV-MFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVFGNDVKD 364
>sp|O74761|PRI2_SCHPO DNA primase large subunit OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pri2 PE=1 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 8 FHKKPKTPSAQTFSRSTWPIMRKLQIQELINEELQKMKEDRELNRTYKKVLDLR 61
F+KKP TW I R + + E I + + K ELN KK+LD R
Sbjct: 32 FYKKPPVSEISIEEFETWAIDRLVVLGE-IESAMLRNKTKNELNGIIKKILDKR 84
>sp|Q8BHG3|CC50B_MOUSE Cell cycle control protein 50B OS=Mus musculus GN=Tmem30b PE=2 SV=1
Length = 353
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 95 NHLMDECILCQARDAQDEPPPNGCTVAWAFSL 126
N +C +C A+ PPP GC +W+F+L
Sbjct: 70 NPGTGDCSVCAAKGQGRAPPP-GCACSWSFTL 100
>sp|C4KZX2|RECR_EXISA Recombination protein RecR OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=recR PE=3 SV=1
Length = 199
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 86 DMETCAICRNHLMDECILCQARDAQD 111
D++ CAIC++ DE ++C +D++D
Sbjct: 65 DIDPCAICKDSHRDETVVCVVQDSRD 90
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3
SV=1
Length = 84
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
R ++ +N VA W W + E C ICR C C+ P + C + W
Sbjct: 2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-------PGDDCPLVWG 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,482,561
Number of Sequences: 539616
Number of extensions: 1832051
Number of successful extensions: 6047
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6020
Number of HSP's gapped (non-prelim): 41
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)