Query psy16592
Match_columns 132
No_of_seqs 114 out of 305
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 16:54:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2930|consensus 100.0 5.5E-34 1.2E-38 212.2 4.2 69 60-131 19-87 (114)
2 COG5194 APC11 Component of SCF 100.0 2.9E-32 6.2E-37 195.4 4.9 60 68-131 1-60 (88)
3 PF12861 zf-Apc11: Anaphase-pr 99.9 1.5E-27 3.3E-32 170.4 5.2 57 68-131 1-58 (85)
4 KOG1493|consensus 99.9 4.3E-26 9.3E-31 162.5 1.8 57 68-131 1-57 (84)
5 PF12678 zf-rbx1: RING-H2 zinc 99.9 2.7E-23 5.8E-28 141.4 5.6 56 69-131 1-56 (73)
6 PF13639 zf-RING_2: Ring finge 95.5 0.0065 1.4E-07 36.8 1.0 27 88-131 1-27 (44)
7 PHA02926 zinc finger-like prot 80.1 0.68 1.5E-05 39.2 0.5 33 87-131 170-203 (242)
8 PHA02929 N1R/p28-like protein; 75.0 1.7 3.8E-05 36.1 1.5 34 86-131 173-206 (238)
9 PF10571 UPF0547: Uncharacteri 73.6 1.6 3.5E-05 25.0 0.8 24 100-130 2-25 (26)
10 KOG1734|consensus 70.6 1.6 3.4E-05 38.2 0.4 37 85-131 222-258 (328)
11 PF13832 zf-HC5HC2H_2: PHD-zin 65.8 2.5 5.5E-05 29.6 0.5 19 87-106 55-73 (110)
12 PF15227 zf-C3HC4_4: zinc fing 58.5 5.5 0.00012 24.4 1.0 10 90-99 1-10 (42)
13 cd00162 RING RING-finger (Real 52.8 6.8 0.00015 21.7 0.7 11 121-131 14-24 (45)
14 COG5243 HRD1 HRD ubiquitin lig 52.4 7.9 0.00017 35.5 1.4 39 86-131 286-324 (491)
15 PF14634 zf-RING_5: zinc-RING 51.9 9.3 0.0002 23.1 1.3 11 120-130 15-25 (44)
16 PF08776 VASP_tetra: VASP tetr 50.9 22 0.00048 22.7 2.9 18 33-50 12-29 (40)
17 PF10367 Vps39_2: Vacuolar sor 49.6 14 0.0003 25.0 2.0 28 87-132 78-105 (109)
18 PF13771 zf-HC5HC2H: PHD-like 47.7 7.6 0.00017 26.1 0.5 20 86-106 35-54 (90)
19 PF11793 FANCL_C: FANCL C-term 45.5 6.2 0.00014 26.6 -0.2 12 87-98 2-13 (70)
20 PF06677 Auto_anti-p27: Sjogre 42.5 8.1 0.00017 24.3 -0.0 17 83-99 13-29 (41)
21 KOG0309|consensus 41.4 11 0.00024 37.4 0.6 35 88-130 1019-1053(1081)
22 PF13923 zf-C3HC4_2: Zinc fing 38.7 16 0.00034 21.4 0.8 12 119-130 11-22 (39)
23 KOG4628|consensus 37.5 18 0.00039 32.0 1.3 27 88-131 230-256 (348)
24 PF08738 Gon7: Gon7 family; I 35.8 35 0.00075 25.3 2.4 22 32-53 65-87 (103)
25 KOG0802|consensus 35.7 19 0.00042 32.4 1.3 31 86-131 290-320 (543)
26 COG5540 RING-finger-containing 32.2 25 0.00055 31.4 1.4 27 88-131 324-350 (374)
27 PF02318 FYVE_2: FYVE-type zin 31.9 92 0.002 22.6 4.1 22 86-107 53-80 (118)
28 smart00184 RING Ring finger. E 31.6 22 0.00047 18.8 0.6 11 121-131 12-22 (39)
29 PF12907 zf-met2: Zinc-binding 31.5 11 0.00024 23.7 -0.7 12 89-100 3-14 (40)
30 KOG3026|consensus 28.4 48 0.001 28.6 2.4 19 30-48 9-35 (262)
31 PF13717 zinc_ribbon_4: zinc-r 26.7 28 0.00061 20.8 0.5 31 100-130 4-36 (36)
32 KOG1813|consensus 26.4 24 0.00051 31.1 0.2 13 88-100 242-254 (313)
33 PRK13718 conjugal transfer pro 26.4 67 0.0014 23.5 2.5 22 68-89 17-38 (84)
34 KOG2034|consensus 25.4 28 0.00061 34.5 0.5 27 86-130 816-842 (911)
35 COG4357 Zinc finger domain con 25.3 24 0.00052 26.7 0.0 20 88-107 63-89 (105)
36 TIGR02116 toxin_Txe_YoeB toxin 22.8 2.4E+02 0.0052 18.7 5.5 50 33-84 19-69 (80)
37 PF14835 zf-RING_6: zf-RING of 22.4 32 0.00069 23.9 0.2 12 119-130 20-31 (65)
38 PF10550 Toxin_36: Conantokin- 20.6 83 0.0018 16.3 1.5 11 38-48 2-12 (15)
39 KOG0320|consensus 20.2 39 0.00084 27.8 0.3 9 121-129 147-155 (187)
40 PF02132 RecR: RecR protein; 20.1 32 0.00069 21.0 -0.2 11 86-96 28-38 (41)
41 cd00049 MH1 MH1 is a small DNA 20.1 1.6E+02 0.0034 22.3 3.6 13 75-87 75-88 (121)
No 1
>KOG2930|consensus
Probab=100.00 E-value=5.5e-34 Score=212.16 Aligned_cols=69 Identities=45% Similarity=0.903 Sum_probs=62.7
Q ss_pred CCCCCCCcccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 60 LRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 60 ~~~~~~~~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.++...||+||||||||+|+|||.+|+|||||||+|++|++||++. ++ +.++|.|+||+|||+||.
T Consensus 19 ~~s~~~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~-~~--~~~EC~VaWG~CNHaFH~ 87 (114)
T KOG2930|consen 19 SSSNEGGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ-SA--TSEECTVAWGVCNHAFHF 87 (114)
T ss_pred cccCCCCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCC-CC--CCCceEEEeeecchHHHH
Confidence 3444455899999999999999999999999999999999999999997 56 789999999999999994
No 2
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.97 E-value=2.9e-32 Score=195.44 Aligned_cols=60 Identities=40% Similarity=0.906 Sum_probs=57.1
Q ss_pred ccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 68 PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 68 ~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
|||+||+||+||+|+||+..|+|||||||||++||+||++. + |+++||+|||.|||+||.
T Consensus 1 ~kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~--~--~~~eC~v~wG~CnHaFH~ 60 (88)
T COG5194 1 MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM--T--PGDECPVVWGVCNHAFHD 60 (88)
T ss_pred CceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC--C--CCCcceEEEEecchHHHH
Confidence 68999999999999999999999999999999999999964 4 899999999999999994
No 3
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.94 E-value=1.5e-27 Score=170.43 Aligned_cols=57 Identities=26% Similarity=0.753 Sum_probs=55.1
Q ss_pred ccEEEEEEEEEEEeEEec-CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 68 PRFTVRKFNAVALWSWDM-DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 68 ~RfkIKkWnAVA~WsWDi-~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
|+|+||+||+||.|+||+ .+|+|||||+.|+++||+|+. |||+||+|||.|+|+||+
T Consensus 1 mkv~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~-------Pgd~Cplv~g~C~H~FH~ 58 (85)
T PF12861_consen 1 MKVKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKF-------PGDDCPLVWGKCSHNFHM 58 (85)
T ss_pred CeeEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccC-------CCCCCceeeccCccHHHH
Confidence 789999999999999997 599999999999999999988 999999999999999997
No 4
>KOG1493|consensus
Probab=99.92 E-value=4.3e-26 Score=162.52 Aligned_cols=57 Identities=32% Similarity=0.844 Sum_probs=55.7
Q ss_pred ccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 68 PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 68 ~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
|+|+||+||+||.|+||..+++|||||++|+++||+|+. |||+||+|||.|.|+||.
T Consensus 1 Mkvki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~-------PgDdCPLv~G~C~h~fh~ 57 (84)
T KOG1493|consen 1 MKVKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKL-------PGDDCPLVWGYCLHAFHA 57 (84)
T ss_pred CceEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcC-------CCCCCccHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998 999999999999999995
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.88 E-value=2.7e-23 Score=141.45 Aligned_cols=56 Identities=45% Similarity=0.987 Sum_probs=52.7
Q ss_pred cEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 69 RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
||+||+|++|+.|+||+.+|+||||+++|+++|++|++ ++++|++++|.|||.||.
T Consensus 1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~-------~~~~~~i~~~~C~H~FH~ 56 (73)
T PF12678_consen 1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQA-------PQDECPIVWGPCGHIFHF 56 (73)
T ss_dssp SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHH-------CTTTS-EEEETTSEEEEH
T ss_pred CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcC-------CccccceEecccCCCEEH
Confidence 69999999999999999999999999999999999999 568899999999999995
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.47 E-value=0.0065 Score=36.81 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=17.9
Q ss_pred CceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 88 ETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 88 D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
|.|+||...|.+ . +=++.. .|||.||.
T Consensus 1 d~C~IC~~~~~~------~----------~~~~~l-~C~H~fh~ 27 (44)
T PF13639_consen 1 DECPICLEEFED------G----------EKVVKL-PCGHVFHR 27 (44)
T ss_dssp -CETTTTCBHHT------T----------SCEEEE-TTSEEEEH
T ss_pred CCCcCCChhhcC------C----------CeEEEc-cCCCeeCH
Confidence 689999888866 1 112334 49999994
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=80.07 E-value=0.68 Score=39.17 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=23.1
Q ss_pred CCceeccccccccc-ccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 87 METCAICRNHLMDE-CILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 87 ~D~CAICRn~f~d~-CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
++.||||...+.+. ++.++. .| +...|+|+|.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRr-------FG-----IL~~CnHsFCl 203 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRY-------FG-----LLDSCNHIFCI 203 (242)
T ss_pred CCCCccCcccccccccccccc-------cc-----ccCCCCchHHH
Confidence 79999999877654 444433 12 66789999964
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.96 E-value=1.7 Score=36.14 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=21.6
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.|+||-..+.+.- . .+....+...|+|.||.
T Consensus 173 ~~~eC~ICle~~~~~~----~--------~~~~~~vl~~C~H~FC~ 206 (238)
T PHA02929 173 KDKECAICMEKVYDKE----I--------KNMYFGILSNCNHVFCI 206 (238)
T ss_pred CCCCCccCCcccccCc----c--------ccccceecCCCCCcccH
Confidence 3578999988765421 0 12223456689999985
No 9
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=73.61 E-value=1.6 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.6
Q ss_pred cccccccccCCCCCCCCCCeeEEEecccccc
Q psy16592 100 ECILCQARDAQDEPPPNGCTVAWAFSLKSSS 130 (132)
Q Consensus 100 ~CpeCQan~~~~~~pgddCpVvwG~CgHsFH 130 (132)
.||+|...... ....||. |||.|-
T Consensus 2 ~CP~C~~~V~~---~~~~Cp~----CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE---SAKFCPH----CGYDFE 25 (26)
T ss_pred cCCCCcCCchh---hcCcCCC----CCCCCc
Confidence 48888775432 2456764 899883
No 10
>KOG1734|consensus
Probab=70.64 E-value=1.6 Score=38.23 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=23.6
Q ss_pred cCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 85 MDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 85 i~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.+||||-+.|+..= .. .|--=.+-.=.|||+||.
T Consensus 222 l~d~vCaVCg~~~~~s~---~e-------egvienty~LsCnHvFHE 258 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV---DE-------EGVIENTYKLSCNHVFHE 258 (328)
T ss_pred CCcchhHhhcchheeec---ch-------hhhhhhheeeecccchHH
Confidence 46789999999987643 11 111112235589999995
No 11
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=65.80 E-value=2.5 Score=29.60 Aligned_cols=19 Identities=32% Similarity=0.780 Sum_probs=16.0
Q ss_pred CCceeccccccccccccccc
Q psy16592 87 METCAICRNHLMDECILCQA 106 (132)
Q Consensus 87 ~D~CAICRn~f~d~CpeCQa 106 (132)
...|.||+.. .+.|+.|..
T Consensus 55 ~~~C~iC~~~-~G~~i~C~~ 73 (110)
T PF13832_consen 55 KLKCSICGKS-GGACIKCSH 73 (110)
T ss_pred CCcCcCCCCC-CceeEEcCC
Confidence 4689999999 788999955
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=58.52 E-value=5.5 Score=24.39 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=5.1
Q ss_pred eecccccccc
Q psy16592 90 CAICRNHLMD 99 (132)
Q Consensus 90 CAICRn~f~d 99 (132)
|.||...|.+
T Consensus 1 CpiC~~~~~~ 10 (42)
T PF15227_consen 1 CPICLDLFKD 10 (42)
T ss_dssp ETTTTSB-SS
T ss_pred CCccchhhCC
Confidence 5566655544
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=52.83 E-value=6.8 Score=21.74 Aligned_cols=11 Identities=0% Similarity=-0.463 Sum_probs=8.2
Q ss_pred EEEeccccccc
Q psy16592 121 AWAFSLKSSSI 131 (132)
Q Consensus 121 vwG~CgHsFH~ 131 (132)
....|||.||.
T Consensus 14 ~~~~C~H~~c~ 24 (45)
T cd00162 14 VLLPCGHVFCR 24 (45)
T ss_pred EecCCCChhcH
Confidence 44569999984
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=52.43 E-value=7.9 Score=35.45 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=25.1
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.|.+|+||+-.++.+=-+ +. +-|-+=.+-.=-|||.||.
T Consensus 286 ~D~~C~ICmde~~h~~~~-~~------~~~~~~~pKrLpCGHilHl 324 (491)
T COG5243 286 SDRTCTICMDEMFHPDHE-PL------PRGLDMTPKRLPCGHILHL 324 (491)
T ss_pred CCCeEEEecccccCCCCc-cC------cccccCCcccccccceeeH
Confidence 468999999997765322 11 1233444455679999995
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=51.87 E-value=9.3 Score=23.09 Aligned_cols=11 Identities=0% Similarity=-0.405 Sum_probs=8.9
Q ss_pred eEEEecccccc
Q psy16592 120 VAWAFSLKSSS 130 (132)
Q Consensus 120 VvwG~CgHsFH 130 (132)
.....|||.|-
T Consensus 15 ~~l~~CgH~~C 25 (44)
T PF14634_consen 15 PRLTSCGHIFC 25 (44)
T ss_pred eEEcccCCHHH
Confidence 67789999884
No 16
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=50.95 E-value=22 Score=22.71 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHhhhhh
Q psy16592 33 IQELINEELQKMKEDREL 50 (132)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~ 50 (132)
|-+-+..||||||+.+-.
T Consensus 12 IL~EvrkEl~K~K~EIIe 29 (40)
T PF08776_consen 12 ILEEVRKELQKVKEEIIE 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444456699999987643
No 17
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=49.55 E-value=14 Score=24.96 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=20.4
Q ss_pred CCceecccccccccccccccccCCCCCCCCCCeeEEEecccccccC
Q psy16592 87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSIY 132 (132)
Q Consensus 87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~~ 132 (132)
...|++|...|.. =+.+..-|||.||..
T Consensus 78 ~~~C~vC~k~l~~------------------~~f~~~p~~~v~H~~ 105 (109)
T PF10367_consen 78 STKCSVCGKPLGN------------------SVFVVFPCGHVVHYS 105 (109)
T ss_pred CCCccCcCCcCCC------------------ceEEEeCCCeEEecc
Confidence 5779998888743 134677889999963
No 18
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=47.67 E-value=7.6 Score=26.05 Aligned_cols=20 Identities=30% Similarity=0.773 Sum_probs=16.2
Q ss_pred CCCceeccccccccccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQA 106 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQa 106 (132)
....|.+|+.. .+.|+.|..
T Consensus 35 ~~~~C~~C~~~-~Ga~i~C~~ 54 (90)
T PF13771_consen 35 RKLKCSICKKK-GGACIGCSH 54 (90)
T ss_pred hCCCCcCCCCC-CCeEEEEeC
Confidence 35789999977 688999955
No 19
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=45.45 E-value=6.2 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=4.9
Q ss_pred CCceeccccccc
Q psy16592 87 METCAICRNHLM 98 (132)
Q Consensus 87 ~D~CAICRn~f~ 98 (132)
+..|+||...+.
T Consensus 2 ~~~C~IC~~~~~ 13 (70)
T PF11793_consen 2 ELECGICYSYRL 13 (70)
T ss_dssp --S-SSS--SS-
T ss_pred CCCCCcCCcEec
Confidence 457999988765
No 20
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=42.55 E-value=8.1 Score=24.28 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=12.7
Q ss_pred EecCCCceecccccccc
Q psy16592 83 WDMDMETCAICRNHLMD 99 (132)
Q Consensus 83 WDi~~D~CAICRn~f~d 99 (132)
|.+..+.|..|..+++.
T Consensus 13 ~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 13 WTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HhHhcCccCCCCCeeEE
Confidence 45667888888888876
No 21
>KOG0309|consensus
Probab=41.35 E-value=11 Score=37.37 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=18.4
Q ss_pred CceecccccccccccccccccCCCCCCCCCCeeEEEecccccc
Q psy16592 88 ETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSS 130 (132)
Q Consensus 88 D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH 130 (132)
..|+||...++. |.-|.... -+-..+=|.|+|.-|
T Consensus 1019 ~~~~~~~~~~~~-C~~C~l~V-------~gss~~Cg~C~Hv~H 1053 (1081)
T KOG0309|consen 1019 TQCAICKGFTFQ-CAICHLAV-------RGSSNFCGTCGHVGH 1053 (1081)
T ss_pred eeccccccceee-eeeEeeEe-------eccchhhcccccccc
Confidence 456666666655 44444421 111223388888776
No 22
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=38.68 E-value=16 Score=21.40 Aligned_cols=12 Identities=17% Similarity=-0.175 Sum_probs=9.8
Q ss_pred eeEEEecccccc
Q psy16592 119 TVAWAFSLKSSS 130 (132)
Q Consensus 119 pVvwG~CgHsFH 130 (132)
|++.-.|||.|.
T Consensus 11 ~~~~~~CGH~fC 22 (39)
T PF13923_consen 11 PVVVTPCGHSFC 22 (39)
T ss_dssp EEEECTTSEEEE
T ss_pred cCEECCCCCchh
Confidence 667789999985
No 23
>KOG4628|consensus
Probab=37.47 E-value=18 Score=32.03 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=16.9
Q ss_pred CceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 88 ETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 88 D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
|+||||--.|. .||.--+ =-|+|.||-
T Consensus 230 ~~CaIClEdY~---------------~GdklRi--LPC~H~FH~ 256 (348)
T KOG4628|consen 230 DTCAICLEDYE---------------KGDKLRI--LPCSHKFHV 256 (348)
T ss_pred ceEEEeecccc---------------cCCeeeE--ecCCCchhh
Confidence 59999854332 2444333 679999983
No 24
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=35.76 E-value=35 Score=25.35 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=17.1
Q ss_pred HHHHHHHHHH-HHhHhhhhhhcc
Q psy16592 32 QIQELINEEL-QKMKEDRELNRT 53 (132)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~~~ 53 (132)
.+|.-||++| ++|++|-.....
T Consensus 65 ~lQddIN~fLTeRMe~dK~~~~~ 87 (103)
T PF08738_consen 65 TLQDDINEFLTERMEEDKARDAQ 87 (103)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 5789999888 789988765544
No 25
>KOG0802|consensus
Probab=35.73 E-value=19 Score=32.45 Aligned_cols=31 Identities=16% Similarity=0.001 Sum_probs=20.5
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.|.||+..+... .. .. +-.=.|+|+||.
T Consensus 290 ~~~~C~IC~e~l~~~-~~-~~-------------~~rL~C~Hifh~ 320 (543)
T KOG0802|consen 290 SDELCIICLEELHSG-HN-IT-------------PKRLPCGHIFHD 320 (543)
T ss_pred cCCeeeeechhhccc-cc-cc-------------cceeecccchHH
Confidence 479999999887642 11 11 134579999984
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.18 E-value=25 Score=31.44 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=19.3
Q ss_pred CceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 88 ETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 88 D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
--||||-..|- + +|. ++---|+|.||-
T Consensus 324 veCaICms~fi------K---------~d~--~~vlPC~H~FH~ 350 (374)
T COG5540 324 VECAICMSNFI------K---------NDR--LRVLPCDHRFHV 350 (374)
T ss_pred ceEEEEhhhhc------c---------cce--EEEeccCceech
Confidence 35999998882 1 233 566789999994
No 27
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=31.93 E-value=92 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=13.2
Q ss_pred CCCceecccccc------cccccccccc
Q psy16592 86 DMETCAICRNHL------MDECILCQAR 107 (132)
Q Consensus 86 ~~D~CAICRn~f------~d~CpeCQan 107 (132)
.+-.|++|..+| ...|.+|+..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~ 80 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHR 80 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCcc
Confidence 456899998765 2457777664
No 28
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=31.63 E-value=22 Score=18.80 Aligned_cols=11 Identities=0% Similarity=-0.444 Sum_probs=8.1
Q ss_pred EEEeccccccc
Q psy16592 121 AWAFSLKSSSI 131 (132)
Q Consensus 121 vwG~CgHsFH~ 131 (132)
+.-.|+|.||.
T Consensus 12 ~~~~C~H~~c~ 22 (39)
T smart00184 12 VVLPCGHTFCR 22 (39)
T ss_pred EEecCCChHHH
Confidence 44569999973
No 29
>PF12907 zf-met2: Zinc-binding
Probab=31.45 E-value=11 Score=23.75 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=9.9
Q ss_pred ceeccccccccc
Q psy16592 89 TCAICRNHLMDE 100 (132)
Q Consensus 89 ~CAICRn~f~d~ 100 (132)
.|.|||..|+..
T Consensus 3 ~C~iC~qtF~~t 14 (40)
T PF12907_consen 3 ICKICRQTFMQT 14 (40)
T ss_pred CcHHhhHHHHhc
Confidence 699999888754
No 30
>KOG3026|consensus
Probab=28.43 E-value=48 Score=28.56 Aligned_cols=19 Identities=53% Similarity=0.711 Sum_probs=13.3
Q ss_pred HHHHHHH--------HHHHHHHhHhhh
Q psy16592 30 KLQIQEL--------INEELQKMKEDR 48 (132)
Q Consensus 30 ~~~~~~~--------~~~~~~~~~~~~ 48 (132)
|||+|.. -||||++|++|-
T Consensus 9 K~QLqqVeaaL~~dP~NeEllkLe~DL 35 (262)
T KOG3026|consen 9 KLQLQQVEAALQGDPENEELLKLEKDL 35 (262)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHH
Confidence 5666543 289999998764
No 31
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.70 E-value=28 Score=20.83 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=15.9
Q ss_pred cccccccccCCC--CCCCCCCeeEEEecccccc
Q psy16592 100 ECILCQARDAQD--EPPPNGCTVAWAFSLKSSS 130 (132)
Q Consensus 100 ~CpeCQan~~~~--~~pgddCpVvwG~CgHsFH 130 (132)
.|+.|++...-+ .-|+..=.+-=+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 588887753311 0022222233357888885
No 32
>KOG1813|consensus
Probab=26.37 E-value=24 Score=31.10 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.5
Q ss_pred Cceeccccccccc
Q psy16592 88 ETCAICRNHLMDE 100 (132)
Q Consensus 88 D~CAICRn~f~d~ 100 (132)
+.|.|||..|..+
T Consensus 242 f~c~icr~~f~~p 254 (313)
T KOG1813|consen 242 FKCFICRKYFYRP 254 (313)
T ss_pred ccccccccccccc
Confidence 4599999999754
No 33
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=26.37 E-value=67 Score=23.47 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=16.4
Q ss_pred ccEEEEEEEEEEEeEEecCCCc
Q psy16592 68 PRFTVRKFNAVALWSWDMDMET 89 (132)
Q Consensus 68 ~RfkIKkWnAVA~WsWDi~~D~ 89 (132)
..+++.=..+|-.||||..-++
T Consensus 17 LtvT~IViSPviywSWDtVK~T 38 (84)
T PRK13718 17 LTITAIVISPVIYWSWDTVKET 38 (84)
T ss_pred heeEEEEecceEEEEehhcccc
Confidence 3466777889999999975433
No 34
>KOG2034|consensus
Probab=25.38 E-value=28 Score=34.50 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=20.3
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEecccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSS 130 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH 130 (132)
..|.|+||..+|-.- |-..-.|||.||
T Consensus 816 p~d~C~~C~~~ll~~------------------pF~vf~CgH~FH 842 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK------------------PFYVFPCGHCFH 842 (911)
T ss_pred CccchHHhcchhhcC------------------cceeeeccchHH
Confidence 468999998877543 235568999999
No 35
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=25.34 E-value=24 Score=26.66 Aligned_cols=20 Identities=35% Similarity=0.893 Sum_probs=16.4
Q ss_pred Cceecccccc-------cccccccccc
Q psy16592 88 ETCAICRNHL-------MDECILCQAR 107 (132)
Q Consensus 88 D~CAICRn~f-------~d~CpeCQan 107 (132)
-.||.||+.| -+.||.||+.
T Consensus 63 iiCGvC~~~LT~~EY~~~~~Cp~C~sp 89 (105)
T COG4357 63 IICGVCRKLLTRAEYGMCGSCPYCQSP 89 (105)
T ss_pred EEhhhhhhhhhHHHHhhcCCCCCcCCC
Confidence 5799999987 3679999984
No 36
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=22.82 E-value=2.4e+02 Score=18.71 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHhhhhhhccccccccCCCCCCCcccEEEE-EEEEEEEeEEe
Q psy16592 33 IQELINEELQKMKEDRELNRTYKKVLDLRSEYPDVPRFTVR-KFNAVALWSWD 84 (132)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RfkIK-kWnAVA~WsWD 84 (132)
+++.|.+-|+.+.++ |..........+......-++.|. .|..|....++
T Consensus 19 ~~~~i~~~i~~l~~~--P~~~~~~~~~L~G~~~g~~r~rig~dyRIIY~i~~~ 69 (80)
T TIGR02116 19 LKKKINELIKDVRRD--PFKGKGKPEPLKGDLSGYWSRRITDEHRLVYRVTDD 69 (80)
T ss_pred HHHHHHHHHHHHHcC--CCCCCCCcccCCCCCCCcEEEEcCCCeEEEEEEECC
Confidence 566666666666544 322111222223333334588888 88888876554
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=22.42 E-value=32 Score=23.93 Aligned_cols=12 Identities=8% Similarity=-0.219 Sum_probs=4.3
Q ss_pred eeEEEecccccc
Q psy16592 119 TVAWAFSLKSSS 130 (132)
Q Consensus 119 pVvwG~CgHsFH 130 (132)
|+-.|.|.|.|=
T Consensus 20 pv~l~~CeH~fC 31 (65)
T PF14835_consen 20 PVCLGGCEHIFC 31 (65)
T ss_dssp -B---SSS--B-
T ss_pred CceeccCccHHH
Confidence 556799999983
No 38
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=20.60 E-value=83 Score=16.29 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=8.2
Q ss_pred HHHHHHhHhhh
Q psy16592 38 NEELQKMKEDR 48 (132)
Q Consensus 38 ~~~~~~~~~~~ 48 (132)
.||.|||.+..
T Consensus 2 eee~~km~~~l 12 (15)
T PF10550_consen 2 EEEVAKMAAEL 12 (15)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 47899997753
No 39
>KOG0320|consensus
Probab=20.19 E-value=39 Score=27.84 Aligned_cols=9 Identities=0% Similarity=-0.492 Sum_probs=6.8
Q ss_pred EEEeccccc
Q psy16592 121 AWAFSLKSS 129 (132)
Q Consensus 121 vwG~CgHsF 129 (132)
+--+|||.|
T Consensus 147 vsTkCGHvF 155 (187)
T KOG0320|consen 147 VSTKCGHVF 155 (187)
T ss_pred cccccchhH
Confidence 556888888
No 40
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=20.13 E-value=32 Score=20.96 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=5.6
Q ss_pred CCCceeccccc
Q psy16592 86 DMETCAICRNH 96 (132)
Q Consensus 86 ~~D~CAICRn~ 96 (132)
..+.|.||.++
T Consensus 28 e~~~C~IC~d~ 38 (41)
T PF02132_consen 28 EEDPCEICSDP 38 (41)
T ss_dssp SSSS-HHHH-T
T ss_pred CCCcCcCCCCC
Confidence 35677777654
No 41
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove. MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.
Probab=20.10 E-value=1.6e+02 Score=22.35 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=9.0
Q ss_pred EEEEEEeEE-ecCC
Q psy16592 75 FNAVALWSW-DMDM 87 (132)
Q Consensus 75 WnAVA~WsW-Di~~ 87 (132)
.-+--+|+| |+..
T Consensus 75 v~~crlwRWpDL~~ 88 (121)
T cd00049 75 VIYCRVWRWPDLRS 88 (121)
T ss_pred eEEEeeeeccccCc
Confidence 345668999 7764
Done!