Query psy16592
Match_columns 132
No_of_seqs 114 out of 305
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 16:54:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0k_B E3 ubiquitin-protein li 99.9 5.9E-24 2E-28 155.7 3.7 77 53-131 14-90 (117)
2 3dpl_R Ring-box protein 1; ubi 99.9 2.1E-22 7.3E-27 144.0 5.6 68 62-131 12-79 (106)
3 2ecl_A Ring-box protein 2; RNF 99.6 2.2E-16 7.7E-21 105.8 -0.0 53 74-131 2-54 (81)
4 1v87_A Deltex protein 2; ring- 97.6 3E-05 1E-09 53.1 2.6 44 86-131 24-67 (114)
5 2ct0_A Non-SMC element 1 homol 97.0 0.00016 5.4E-09 48.9 0.6 27 86-131 14-40 (74)
6 3ng2_A RNF4, snurf, ring finge 92.8 0.033 1.1E-06 34.4 1.1 33 86-131 9-41 (71)
7 2ecm_A Ring finger and CHY zin 92.2 0.06 2.1E-06 31.7 1.7 30 86-131 4-33 (55)
8 2kiz_A E3 ubiquitin-protein li 91.9 0.057 2E-06 33.4 1.4 29 86-131 13-41 (69)
9 2xeu_A Ring finger protein 4; 91.3 0.063 2.1E-06 32.2 1.0 33 86-131 2-34 (64)
10 2ea6_A Ring finger protein 4; 90.8 0.071 2.4E-06 32.5 0.9 33 86-131 14-46 (69)
11 2ect_A Ring finger protein 126 90.4 0.095 3.2E-06 33.1 1.3 29 86-131 14-42 (78)
12 1chc_A Equine herpes virus-1 r 89.7 0.1 3.5E-06 32.0 1.0 26 87-131 5-30 (68)
13 1x4j_A Ring finger protein 38; 89.4 0.17 6E-06 31.8 1.9 29 86-131 22-50 (75)
14 2ysj_A Tripartite motif-contai 89.2 0.12 4.1E-06 31.5 1.0 13 86-98 19-31 (63)
15 2l0b_A E3 ubiquitin-protein li 87.9 0.25 8.5E-06 32.6 2.0 29 86-131 39-67 (91)
16 2ct2_A Tripartite motif protei 87.4 0.25 8.4E-06 31.5 1.7 29 87-131 15-43 (88)
17 1g25_A CDK-activating kinase a 86.7 0.2 6.9E-06 30.7 0.9 14 86-99 2-16 (65)
18 2ysl_A Tripartite motif-contai 86.6 0.22 7.7E-06 30.8 1.1 13 87-99 20-32 (73)
19 2yur_A Retinoblastoma-binding 86.5 0.15 5.1E-06 32.4 0.2 13 87-99 15-27 (74)
20 2djb_A Polycomb group ring fin 85.1 0.18 6.3E-06 31.6 0.2 13 87-99 15-27 (72)
21 2ecn_A Ring finger protein 141 84.6 0.3 1E-05 30.1 1.0 11 87-97 15-25 (70)
22 2d8t_A Dactylidin, ring finger 84.4 0.41 1.4E-05 29.8 1.6 13 86-98 14-26 (71)
23 2y43_A E3 ubiquitin-protein li 83.2 0.26 8.9E-06 32.6 0.3 13 87-99 22-34 (99)
24 2ckl_A Polycomb group ring fin 81.9 0.4 1.4E-05 32.2 0.8 13 87-99 15-27 (108)
25 2ecj_A Tripartite motif-contai 81.8 0.49 1.7E-05 27.8 1.1 14 86-99 14-27 (58)
26 1iym_A EL5; ring-H2 finger, ub 81.1 0.56 1.9E-05 27.4 1.2 29 87-131 5-33 (55)
27 2egp_A Tripartite motif-contai 80.4 0.39 1.3E-05 30.0 0.3 13 87-99 12-24 (79)
28 4ap4_A E3 ubiquitin ligase RNF 78.3 0.71 2.4E-05 30.9 1.1 34 85-131 70-103 (133)
29 2ecw_A Tripartite motif-contai 77.1 0.88 3E-05 28.3 1.2 14 86-99 18-31 (85)
30 2csy_A Zinc finger protein 183 75.7 1 3.5E-05 28.5 1.3 13 87-99 15-27 (81)
31 2ckl_B Ubiquitin ligase protei 72.6 1.1 3.6E-05 32.3 0.8 13 87-99 54-66 (165)
32 2ecv_A Tripartite motif-contai 71.1 1 3.5E-05 28.0 0.4 14 86-99 18-31 (85)
33 1jm7_B BARD1, BRCA1-associated 71.1 0.88 3E-05 31.1 0.1 13 87-99 22-34 (117)
34 4ayc_A E3 ubiquitin-protein li 70.7 1.5 5.1E-05 30.8 1.2 11 88-98 54-64 (138)
35 3l11_A E3 ubiquitin-protein li 70.1 1.2 4.2E-05 30.0 0.7 12 87-98 15-26 (115)
36 3lrq_A E3 ubiquitin-protein li 69.3 1.2 4.2E-05 29.7 0.5 13 87-99 22-34 (100)
37 3ztg_A E3 ubiquitin-protein li 68.6 1.2 4.1E-05 28.7 0.3 13 87-99 13-25 (92)
38 1jm7_A BRCA1, breast cancer ty 68.2 1.7 5.8E-05 28.7 1.0 12 88-99 22-33 (112)
39 3k1l_B Fancl; UBC, ring, RWD, 68.2 1.6 5.4E-05 37.9 1.0 34 86-131 307-340 (381)
40 2ecy_A TNF receptor-associated 67.6 1.6 5.4E-05 26.6 0.7 13 87-99 15-27 (66)
41 1t1h_A Gspef-atpub14, armadill 65.2 2.6 8.9E-05 26.3 1.4 13 87-99 8-20 (78)
42 1use_A VAsp, vasodilator-stimu 64.2 5.9 0.0002 24.9 2.9 18 32-49 15-32 (45)
43 2ep4_A Ring finger protein 24; 62.2 4.2 0.00014 25.0 2.0 29 86-131 14-42 (74)
44 3fl2_A E3 ubiquitin-protein li 61.9 2.3 7.9E-05 29.1 0.8 13 87-99 52-64 (124)
45 2d8s_A Cellular modulator of i 61.0 3.6 0.00012 27.2 1.6 13 86-98 14-26 (80)
46 1bor_A Transcription factor PM 59.0 3 0.0001 25.0 0.8 14 86-99 5-18 (56)
47 2lq6_A Bromodomain-containing 58.7 2.1 7.3E-05 29.1 0.1 19 88-106 18-36 (87)
48 3nw0_A Non-structural maintena 55.9 3.1 0.00011 32.8 0.6 12 87-98 180-191 (238)
49 1rmd_A RAG1; V(D)J recombinati 53.4 4.4 0.00015 27.2 1.0 13 87-99 23-35 (116)
50 1zbd_B Rabphilin-3A; G protein 47.8 28 0.00095 25.3 4.7 22 86-107 54-81 (134)
51 1z6u_A NP95-like ring finger p 45.2 6.2 0.00021 28.4 0.8 13 87-99 78-90 (150)
52 3hct_A TNF receptor-associated 39.0 7.4 0.00025 26.4 0.3 13 87-99 18-30 (118)
53 1bb1_B Designed, thermostable 38.4 23 0.0008 21.0 2.4 18 33-50 10-27 (36)
54 3knv_A TNF receptor-associated 36.0 9.6 0.00033 27.2 0.5 14 87-100 31-44 (141)
55 3htk_C E3 SUMO-protein ligase 35.9 13 0.00043 30.6 1.3 17 86-102 180-196 (267)
56 2c2l_A CHIP, carboxy terminus 34.7 11 0.00037 28.1 0.6 16 87-102 208-223 (281)
57 3oei_C RELK (toxin RV3358); to 31.8 37 0.0013 23.3 3.0 63 18-82 15-83 (96)
58 2puy_A PHD finger protein 21A; 27.1 17 0.00059 22.4 0.6 13 84-96 2-14 (60)
59 4dxt_A SUN domain-containing p 25.1 40 0.0014 25.8 2.4 35 29-63 5-39 (198)
60 2f42_A STIP1 homology and U-bo 21.6 26 0.00089 26.6 0.7 16 87-102 106-121 (179)
61 2yu4_A E3 SUMO-protein ligase 20.1 37 0.0013 22.2 1.2 14 87-100 7-20 (94)
No 1
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.88 E-value=5.9e-24 Score=155.71 Aligned_cols=77 Identities=42% Similarity=0.792 Sum_probs=20.8
Q ss_pred cccccccCCCCCCCcccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 53 TYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 53 ~~~~~~~~~~~~~~~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
..+.-+++++...+.+||+||+||+|+.|+||+.+|+|+||++.|+++|+.|+.+..+. ++++|+++++.|+|.||.
T Consensus 14 ~~~gg~~~~~~~~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~--~~~~~~v~~~~C~H~FH~ 90 (117)
T 4a0k_B 14 YFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA--TSEECTVAWGVCNHAFHF 90 (117)
T ss_dssp --------------CCSEEEEEEEEEEEEEECCCC--------------------------------------------
T ss_pred hhccCCCCCCCCCcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccc--cccccccccCCcCceEcH
Confidence 34445555666677899999999999999999999999999999999999999976665 799999999999999995
No 2
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.86 E-value=2.1e-22 Score=144.03 Aligned_cols=68 Identities=47% Similarity=0.941 Sum_probs=56.9
Q ss_pred CCCCCcccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 62 SEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 62 ~~~~~~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
....+..||+||+|++|+.|+||+.+|+|+||++.|++.|+.|+.+..+. ++++|+++++.|+|.||.
T Consensus 12 ~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~--~~~~~~~~~~~C~H~FH~ 79 (106)
T 3dpl_R 12 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA--TSEECTVAWGVCNHAFHF 79 (106)
T ss_dssp -----CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC-----CCCEEEETTSCEEEH
T ss_pred ccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhcccccc--CCccceEeecccCcEECH
Confidence 34457899999999999999999999999999999999999999876555 899999999999999995
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-16 Score=105.82 Aligned_cols=53 Identities=38% Similarity=0.882 Sum_probs=49.3
Q ss_pred EEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 74 KFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 74 kWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
+|++|+.|+||+.+|+|+||++.|++.|+.|+.+. .+++++++.+.|+|.||.
T Consensus 2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~-----~~~~~~~~~~~C~H~FH~ 54 (81)
T 2ecl_A 2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQAEN-----KQEDCVVVWGECNHSFHN 54 (81)
T ss_dssp CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHT-----CTTTCCEEEETTSCEEEH
T ss_pred CcceeEEeeecCCCCCCcccChhhhccCccccccc-----CCCceEEEeCCCCCccCh
Confidence 58999999999999999999999999999999954 578999999999999994
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.59 E-value=3e-05 Score=53.10 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=33.1
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.|+||...|.+....+....... ......++...|+|.||.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~C~H~Fh~ 67 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKA--LGPMVVGRLTKCSHAFHL 67 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSS--SCSSCCEEESSSCCEECH
T ss_pred CCCcCccCChhhcCcccccccccccc--cCcccceecCCCCCcccH
Confidence 56899999999999987776643322 234466678899999994
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00016 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.|+||++.|+ +++.|+ .|+|.||.
T Consensus 14 ~i~~C~IC~~~i~---------------~g~~C~----~C~h~fH~ 40 (74)
T 2ct0_A 14 AVKICNICHSLLI---------------QGQSCE----TCGIRMHL 40 (74)
T ss_dssp SSCBCSSSCCBCS---------------SSEECS----SSCCEECH
T ss_pred CCCcCcchhhHcc---------------cCCccC----CCCchhhH
Confidence 4699999999996 134665 89999995
No 6
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=92.83 E-value=0.033 Score=34.40 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.+..|+||...|.++- .++-.++.-.|||.||.
T Consensus 9 ~~~~C~IC~~~~~~~~-------------~~~~~~~~~~CgH~fc~ 41 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIV-------------QNGRLIVSTECGHVFCS 41 (71)
T ss_dssp TCCBCTTTCCBHHHHH-------------TTTCCEEECTTSCEEEH
T ss_pred CCCCCcccChhhhccc-------------cccCCeEeCCCCChHhH
Confidence 4578999998887641 11234566789999984
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=92.24 E-value=0.06 Score=31.70 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=20.0
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
..+.|+||...|.+ + +=+++.-.|+|.||.
T Consensus 4 ~~~~C~IC~~~~~~---------------~-~~~~~~~~CgH~fc~ 33 (55)
T 2ecm_A 4 GSSGCPICLEDIHT---------------S-RVVAHVLPCGHLLHR 33 (55)
T ss_dssp CCCSCTTTCCCCCT---------------T-TSCEEECTTSCEEET
T ss_pred CCCcCcccChhhcC---------------C-CcCeEecCCCCcccH
Confidence 46788888877642 1 123455679999995
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=91.93 E-value=0.057 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=18.3
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
..+.|+||...|... + .++.-.|||.||.
T Consensus 13 ~~~~C~IC~~~~~~~---------------~--~~~~~~C~H~fc~ 41 (69)
T 2kiz_A 13 TEEKCTICLSILEEG---------------E--DVRRLPCMHLFHQ 41 (69)
T ss_dssp CCCSBTTTTBCCCSS---------------S--CEEECTTSCEEEH
T ss_pred CCCCCeeCCccccCC---------------C--cEEEeCCCCHHHH
Confidence 357899998766321 1 1233459999984
No 9
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=91.32 E-value=0.063 Score=32.24 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
++..|+||...+.++-. + +-.++...|||.||.
T Consensus 2 ~~~~C~IC~~~~~~~~~------------~-~~~~~~~~CgH~fc~ 34 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ------------N-GRLIVSTECGHVFCS 34 (64)
T ss_dssp CCCBCTTTCCBHHHHHH------------T-TCCEEEETTSCEEEH
T ss_pred CCCCCCccChhhhCccc------------c-CCCEEeCCCCCchhH
Confidence 35689999988866431 1 113456789999984
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.80 E-value=0.071 Score=32.47 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=22.6
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
....|+||...|.++-. ..-.++.-.|||.||.
T Consensus 14 ~~~~C~IC~~~~~~~~~-------------~~~~~~~~~CgH~fc~ 46 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQ-------------NGRLIVSTECGHVFCS 46 (69)
T ss_dssp CCCCCTTTCCCHHHHTT-------------TTCCEEECSSSCEEEH
T ss_pred CCCCCcccCcccccccc-------------ccCCeEeCCCCChhcH
Confidence 46789999988875421 1223456789999984
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.43 E-value=0.095 Score=33.13 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=18.6
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
..+.|+||...|.+. + .++.-.|+|.||.
T Consensus 14 ~~~~C~IC~~~~~~~---------------~--~~~~~~C~H~fc~ 42 (78)
T 2ect_A 14 SGLECPVCKEDYALG---------------E--SVRQLPCNHLFHD 42 (78)
T ss_dssp SSCCCTTTTSCCCTT---------------S--CEEECTTSCEEET
T ss_pred CCCCCeeCCccccCC---------------C--CEEEeCCCCeecH
Confidence 457899998876432 1 1222359999985
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=89.70 E-value=0.1 Score=32.02 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=17.1
Q ss_pred CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.+.|+||...+.++ ++.-.|||.||.
T Consensus 5 ~~~C~IC~~~~~~~-------------------~~~~~C~H~fc~ 30 (68)
T 1chc_A 5 AERCPICLEDPSNY-------------------SMALPCLHAFCY 30 (68)
T ss_dssp CCCCSSCCSCCCSC-------------------EEETTTTEEEST
T ss_pred CCCCeeCCccccCC-------------------cEecCCCCeeHH
Confidence 56788887765421 234468999985
No 13
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.40 E-value=0.17 Score=31.83 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=19.5
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
..+.|+||...|.+. + .++.-.|+|.||.
T Consensus 22 ~~~~C~IC~~~~~~~---------------~--~~~~l~C~H~fh~ 50 (75)
T 1x4j_A 22 EQTLCVVCMCDFESR---------------Q--LLRVLPCNHEFHA 50 (75)
T ss_dssp SCCEETTTTEECCBT---------------C--EEEEETTTEEEET
T ss_pred CCCCCeECCcccCCC---------------C--eEEEECCCCHhHH
Confidence 467899998776421 1 2344469999995
No 14
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.20 E-value=0.12 Score=31.45 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=9.5
Q ss_pred CCCceeccccccc
Q psy16592 86 DMETCAICRNHLM 98 (132)
Q Consensus 86 ~~D~CAICRn~f~ 98 (132)
.+..|.||...|.
T Consensus 19 ~~~~C~IC~~~~~ 31 (63)
T 2ysj_A 19 EEVICPICLDILQ 31 (63)
T ss_dssp CCCBCTTTCSBCS
T ss_pred cCCCCCcCCchhC
Confidence 3578999987664
No 15
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=87.89 E-value=0.25 Score=32.64 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=18.7
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.|+||...|.+ ++ .++.-.|||.||.
T Consensus 39 ~~~~C~IC~~~~~~---------------~~--~~~~l~C~H~Fh~ 67 (91)
T 2l0b_A 39 QEMCCPICCSEYVK---------------GD--VATELPCHHYFHK 67 (91)
T ss_dssp SCSEETTTTEECCT---------------TC--EEEEETTTEEEEH
T ss_pred CCCCCcccChhhcC---------------CC--cEEecCCCChHHH
Confidence 35779999876642 12 2333459999994
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.37 E-value=0.25 Score=31.45 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=18.4
Q ss_pred CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
...|.||...|.+ ++..|++. .|||.||.
T Consensus 15 ~~~C~IC~~~~~~---------------~~~~~~~~-~CgH~fC~ 43 (88)
T 2ct2_A 15 VLECPICMESFTE---------------EQLRPKLL-HCGHTICR 43 (88)
T ss_dssp CCBCTTTCCBCCT---------------TSSCEEEC-SSSCEEEH
T ss_pred CCCCccCCccccc---------------cCCCeEEC-CCCChhhH
Confidence 4679998876643 12224443 79999984
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.72 E-value=0.2 Score=30.71 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=9.1
Q ss_pred CCCceecccc-cccc
Q psy16592 86 DMETCAICRN-HLMD 99 (132)
Q Consensus 86 ~~D~CAICRn-~f~d 99 (132)
++..|.||.. .+.+
T Consensus 2 ~~~~C~IC~~~~~~~ 16 (65)
T 1g25_A 2 DDQGCPRCKTTKYRN 16 (65)
T ss_dssp CTTCCSTTTTHHHHC
T ss_pred CCCcCCcCCCCccCC
Confidence 4567888877 5533
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.56 E-value=0.22 Score=30.77 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.7
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 20 ~~~C~IC~~~~~~ 32 (73)
T 2ysl_A 20 EVICPICLDILQK 32 (73)
T ss_dssp CCBCTTTCSBCSS
T ss_pred CCEeccCCcccCC
Confidence 5789999877653
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=86.53 E-value=0.15 Score=32.36 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.3
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
+..|.||...|.+
T Consensus 15 ~~~C~IC~~~~~~ 27 (74)
T 2yur_A 15 ELLCLICKDIMTD 27 (74)
T ss_dssp GGSCSSSCCCCTT
T ss_pred CCCCcCCChHHhC
Confidence 4678888777654
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.13 E-value=0.18 Score=31.56 Aligned_cols=13 Identities=38% Similarity=0.922 Sum_probs=8.9
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 15 ~~~C~IC~~~~~~ 27 (72)
T 2djb_A 15 YILCSICKGYLID 27 (72)
T ss_dssp GGSCTTTSSCCSS
T ss_pred CCCCCCCChHHHC
Confidence 4678888766644
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.63 E-value=0.3 Score=30.11 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=7.9
Q ss_pred CCceecccccc
Q psy16592 87 METCAICRNHL 97 (132)
Q Consensus 87 ~D~CAICRn~f 97 (132)
...|.||...+
T Consensus 15 ~~~C~IC~~~~ 25 (70)
T 2ecn_A 15 EEECCICMDGR 25 (70)
T ss_dssp CCCCSSSCCSC
T ss_pred CCCCeeCCcCc
Confidence 56788887654
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.38 E-value=0.41 Score=29.82 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.8
Q ss_pred CCCceeccccccc
Q psy16592 86 DMETCAICRNHLM 98 (132)
Q Consensus 86 ~~D~CAICRn~f~ 98 (132)
....|.||...+.
T Consensus 14 ~~~~C~IC~~~~~ 26 (71)
T 2d8t_A 14 TVPECAICLQTCV 26 (71)
T ss_dssp SCCBCSSSSSBCS
T ss_pred CCCCCccCCcccC
Confidence 4578999987763
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=83.21 E-value=0.26 Score=32.59 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=9.4
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 22 ~~~C~IC~~~~~~ 34 (99)
T 2y43_A 22 LLRCGICFEYFNI 34 (99)
T ss_dssp HTBCTTTCSBCSS
T ss_pred CCCcccCChhhCC
Confidence 4678888877654
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=81.90 E-value=0.4 Score=32.22 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=8.6
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
+..|.||...|.+
T Consensus 15 ~~~C~IC~~~~~~ 27 (108)
T 2ckl_A 15 HLMCVLCGGYFID 27 (108)
T ss_dssp GTBCTTTSSBCSS
T ss_pred cCCCccCChHHhC
Confidence 4678888766643
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.80 E-value=0.49 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=10.5
Q ss_pred CCCceecccccccc
Q psy16592 86 DMETCAICRNHLMD 99 (132)
Q Consensus 86 ~~D~CAICRn~f~d 99 (132)
....|.||...+.+
T Consensus 14 ~~~~C~IC~~~~~~ 27 (58)
T 2ecj_A 14 VEASCSVCLEYLKE 27 (58)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred cCCCCccCCcccCc
Confidence 35789999887754
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.09 E-value=0.56 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=18.2
Q ss_pred CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.+.|+||...|.+ + +-++....|||.||.
T Consensus 5 ~~~C~IC~~~~~~---------------~-~~~~~~~~C~H~f~~ 33 (55)
T 1iym_A 5 GVECAVCLAELED---------------G-EEARFLPRCGHGFHA 33 (55)
T ss_dssp SCCCTTTCCCCCT---------------T-SCCEECSSSCCEECT
T ss_pred CCcCccCCccccC---------------C-CceEECCCCCCcccH
Confidence 5678888876632 1 122333369999995
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=80.35 E-value=0.39 Score=30.01 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=10.1
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
+..|.||...|.+
T Consensus 12 ~~~C~IC~~~~~~ 24 (79)
T 2egp_A 12 EVTCPICLELLTE 24 (79)
T ss_dssp CCEETTTTEECSS
T ss_pred CCCCcCCCcccCC
Confidence 5689999887754
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=78.34 E-value=0.71 Score=30.93 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=21.7
Q ss_pred cCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 85 MDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 85 i~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
-....|+||...|.+.-.. .-.++.-.|||.||.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~-------------~~~~~~~~CgH~fc~ 103 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQN-------------GRLIVSTECGHVFCS 103 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHT-------------TCCEEEETTSBEEEH
T ss_pred CCCCCCCCCCCcccccccc-------------CcceEeCCCCChhhH
Confidence 4567788888777653111 113456689999984
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.12 E-value=0.88 Score=28.31 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=10.0
Q ss_pred CCCceecccccccc
Q psy16592 86 DMETCAICRNHLMD 99 (132)
Q Consensus 86 ~~D~CAICRn~f~d 99 (132)
....|.||...|.+
T Consensus 18 ~~~~C~IC~~~~~~ 31 (85)
T 2ecw_A 18 EEVTCPICLELLKE 31 (85)
T ss_dssp TTTSCTTTCSCCSS
T ss_pred cCCCCcCCChhhCc
Confidence 35689999877643
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.66 E-value=1 Score=28.55 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.2
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 15 ~~~C~IC~~~~~~ 27 (81)
T 2csy_A 15 PFRCFICRQAFQN 27 (81)
T ss_dssp CSBCSSSCSBCCS
T ss_pred CCCCcCCCchhcC
Confidence 3579999877743
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=72.58 E-value=1.1 Score=32.27 Aligned_cols=13 Identities=31% Similarity=0.651 Sum_probs=9.1
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 54 ~~~C~IC~~~~~~ 66 (165)
T 2ckl_B 54 ELMCPICLDMLKN 66 (165)
T ss_dssp HHBCTTTSSBCSS
T ss_pred CCCCcccChHhhC
Confidence 4578888777654
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.15 E-value=1 Score=27.99 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.4
Q ss_pred CCCceecccccccc
Q psy16592 86 DMETCAICRNHLMD 99 (132)
Q Consensus 86 ~~D~CAICRn~f~d 99 (132)
....|.||...+.+
T Consensus 18 ~~~~C~IC~~~~~~ 31 (85)
T 2ecv_A 18 EEVTCPICLELLTQ 31 (85)
T ss_dssp CCCCCTTTCSCCSS
T ss_pred CCCCCCCCCcccCC
Confidence 35789999887754
No 33
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.13 E-value=0.88 Score=31.10 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=9.4
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
.-.|.||...|.+
T Consensus 22 ~~~C~IC~~~~~~ 34 (117)
T 1jm7_B 22 LLRCSRCTNILRE 34 (117)
T ss_dssp TTSCSSSCSCCSS
T ss_pred CCCCCCCChHhhC
Confidence 4678888877754
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=70.74 E-value=1.5 Score=30.84 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=7.8
Q ss_pred Cceeccccccc
Q psy16592 88 ETCAICRNHLM 98 (132)
Q Consensus 88 D~CAICRn~f~ 98 (132)
..|.||...|.
T Consensus 54 ~~C~iC~~~~~ 64 (138)
T 4ayc_A 54 LQCIICSEYFI 64 (138)
T ss_dssp SBCTTTCSBCS
T ss_pred CCCcccCcccC
Confidence 46999877664
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=70.13 E-value=1.2 Score=29.98 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=8.5
Q ss_pred CCceeccccccc
Q psy16592 87 METCAICRNHLM 98 (132)
Q Consensus 87 ~D~CAICRn~f~ 98 (132)
+..|.||...|.
T Consensus 15 ~~~C~iC~~~~~ 26 (115)
T 3l11_A 15 ECQCGICMEILV 26 (115)
T ss_dssp HHBCTTTCSBCS
T ss_pred CCCCccCCcccC
Confidence 467888887664
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=69.26 E-value=1.2 Score=29.70 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=9.3
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
+..|+||...|.+
T Consensus 22 ~~~C~IC~~~~~~ 34 (100)
T 3lrq_A 22 VFRCFICMEKLRD 34 (100)
T ss_dssp HTBCTTTCSBCSS
T ss_pred CCCCccCCccccC
Confidence 4678888877754
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=68.56 E-value=1.2 Score=28.74 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.8
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
+-.|.||...|.+
T Consensus 13 ~~~C~IC~~~~~~ 25 (92)
T 3ztg_A 13 ELLCLICKDIMTD 25 (92)
T ss_dssp TTEETTTTEECSS
T ss_pred CCCCCCCChhhcC
Confidence 4679999887765
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.17 E-value=1.7 Score=28.71 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=8.3
Q ss_pred Cceecccccccc
Q psy16592 88 ETCAICRNHLMD 99 (132)
Q Consensus 88 D~CAICRn~f~d 99 (132)
..|+||...+.+
T Consensus 22 ~~C~IC~~~~~~ 33 (112)
T 1jm7_A 22 LECPICLELIKE 33 (112)
T ss_dssp TSCSSSCCCCSS
T ss_pred CCCcccChhhcC
Confidence 468888876643
No 39
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=68.16 E-value=1.6 Score=37.86 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
....||||-..+.+. -+ .|...|.- ..|||.||.
T Consensus 307 ~~~ECaICys~~l~~---g~-------lPdk~C~n--~~C~h~FH~ 340 (381)
T 3k1l_B 307 EELRCNICFAYRLDG---GE-------VPLVSCDN--AKCVLKCHA 340 (381)
T ss_dssp SCCSCSSSCCSSCTT---CC-------CCCBCCSC--TTCCCCBCS
T ss_pred CCccCcccceeecCC---CC-------CccccccC--CccCCccch
Confidence 346799999988751 11 15566743 589999995
No 40
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.65 E-value=1.6 Score=26.60 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.3
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...+.+
T Consensus 15 ~~~C~IC~~~~~~ 27 (66)
T 2ecy_A 15 KYKCEKCHLVLCS 27 (66)
T ss_dssp CEECTTTCCEESS
T ss_pred CCCCCCCChHhcC
Confidence 4679999877643
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=65.17 E-value=2.6 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=8.4
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
.-.|.||...|.+
T Consensus 8 ~~~C~IC~~~~~~ 20 (78)
T 1t1h_A 8 YFRCPISLELMKD 20 (78)
T ss_dssp SSSCTTTSCCCSS
T ss_pred cCCCCCccccccC
Confidence 4567787766644
No 42
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=64.25 E-value=5.9 Score=24.95 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHhhhh
Q psy16592 32 QIQELINEELQKMKEDRE 49 (132)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~ 49 (132)
.|-+-+..||||||+++-
T Consensus 15 EIL~E~RkElqK~K~EII 32 (45)
T 1use_A 15 ELLEEVKKELQKVKEEII 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445679999999864
No 43
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.24 E-value=4.2 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=18.7
Q ss_pred CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592 86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI 131 (132)
Q Consensus 86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~ 131 (132)
.++.|+||...|.+. +. ++.-.|+|.||.
T Consensus 14 ~~~~C~IC~~~~~~~---------------~~--~~~~~C~H~f~~ 42 (74)
T 2ep4_A 14 LHELCAVCLEDFKPR---------------DE--LGICPCKHAFHR 42 (74)
T ss_dssp CSCBCSSSCCBCCSS---------------SC--EEEETTTEEEEH
T ss_pred CCCCCcCCCcccCCC---------------Cc--EEEcCCCCEecH
Confidence 367899998876532 11 122359999984
No 44
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=61.93 E-value=2.3 Score=29.07 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=9.5
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 52 ~~~C~IC~~~~~~ 64 (124)
T 3fl2_A 52 TFQCICCQELVFR 64 (124)
T ss_dssp HTBCTTTSSBCSS
T ss_pred CCCCCcCChHHcC
Confidence 4679998877653
No 45
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.01 E-value=3.6 Score=27.17 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=9.9
Q ss_pred CCCceeccccccc
Q psy16592 86 DMETCAICRNHLM 98 (132)
Q Consensus 86 ~~D~CAICRn~f~ 98 (132)
..+.|.||...++
T Consensus 14 ~~~~C~IC~~~~~ 26 (80)
T 2d8s_A 14 SQDICRICHCEGD 26 (80)
T ss_dssp TSCCCSSSCCCCC
T ss_pred CCCCCeEcCcccc
Confidence 3588999987664
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.99 E-value=3 Score=25.05 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=9.9
Q ss_pred CCCceecccccccc
Q psy16592 86 DMETCAICRNHLMD 99 (132)
Q Consensus 86 ~~D~CAICRn~f~d 99 (132)
+...|+||...|.+
T Consensus 5 ~~~~C~IC~~~~~~ 18 (56)
T 1bor_A 5 QFLRCQQCQAEAKC 18 (56)
T ss_dssp CCSSCSSSCSSCBC
T ss_pred cCCCceEeCCccCC
Confidence 34578888887754
No 47
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=58.72 E-value=2.1 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=15.7
Q ss_pred Cceeccccccccccccccc
Q psy16592 88 ETCAICRNHLMDECILCQA 106 (132)
Q Consensus 88 D~CAICRn~f~d~CpeCQa 106 (132)
.+|.||+..=.+.|+.|..
T Consensus 18 l~C~iC~~~~~GAciqC~~ 36 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCHK 36 (87)
T ss_dssp CCBTTTTBCCSSCEEECSC
T ss_pred CCCcCCCCCCCcEeEecCC
Confidence 5799999776789999944
No 48
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=55.91 E-value=3.1 Score=32.76 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=9.9
Q ss_pred CCceeccccccc
Q psy16592 87 METCAICRNHLM 98 (132)
Q Consensus 87 ~D~CAICRn~f~ 98 (132)
...|+||+..+.
T Consensus 180 i~~C~iC~~iv~ 191 (238)
T 3nw0_A 180 VKICNICHSLLI 191 (238)
T ss_dssp CCBCTTTCSBCS
T ss_pred CCcCcchhhHHh
Confidence 578999998876
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.44 E-value=4.4 Score=27.23 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=9.2
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 23 ~~~C~IC~~~~~~ 35 (116)
T 1rmd_A 23 SISCQICEHILAD 35 (116)
T ss_dssp HTBCTTTCSBCSS
T ss_pred CCCCCCCCcHhcC
Confidence 4578888877654
No 50
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.82 E-value=28 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=17.3
Q ss_pred CCCceeccccccc------ccccccccc
Q psy16592 86 DMETCAICRNHLM------DECILCQAR 107 (132)
Q Consensus 86 ~~D~CAICRn~f~------d~CpeCQan 107 (132)
.+..|++|...|. ..|.+|+.+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~ 81 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKN 81 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcc
Confidence 5689999999993 258888764
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=45.22 E-value=6.2 Score=28.44 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=9.6
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 78 ~~~C~IC~~~~~~ 90 (150)
T 1z6u_A 78 SFMCVCCQELVYQ 90 (150)
T ss_dssp HTBCTTTSSBCSS
T ss_pred CCEeecCChhhcC
Confidence 3579999887754
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=38.98 E-value=7.4 Score=26.39 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=8.7
Q ss_pred CCceecccccccc
Q psy16592 87 METCAICRNHLMD 99 (132)
Q Consensus 87 ~D~CAICRn~f~d 99 (132)
...|.||...|.+
T Consensus 18 ~~~C~IC~~~~~~ 30 (118)
T 3hct_A 18 KYECPICLMALRE 30 (118)
T ss_dssp GGBCTTTCSBCSS
T ss_pred CCCCCcCChhhcC
Confidence 3578888776653
No 53
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=38.38 E-value=23 Score=21.04 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHhhhhh
Q psy16592 33 IQELINEELQKMKEDREL 50 (132)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~ 50 (132)
-|..|.||+|..||.+..
T Consensus 10 eqaaieeeiqaikeeiaa 27 (36)
T 1bb1_B 10 EQAAIEEEIQAIKEEIAA 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999999998765
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=35.95 E-value=9.6 Score=27.23 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=9.2
Q ss_pred CCceeccccccccc
Q psy16592 87 METCAICRNHLMDE 100 (132)
Q Consensus 87 ~D~CAICRn~f~d~ 100 (132)
.-.|.||...|.++
T Consensus 31 ~~~C~IC~~~~~~p 44 (141)
T 3knv_A 31 KYLCSACRNVLRRP 44 (141)
T ss_dssp GGBCTTTCSBCSSE
T ss_pred CcCCCCCChhhcCc
Confidence 34788888776543
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.88 E-value=13 Score=30.59 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=12.7
Q ss_pred CCCceeccccccccccc
Q psy16592 86 DMETCAICRNHLMDECI 102 (132)
Q Consensus 86 ~~D~CAICRn~f~d~Cp 102 (132)
..-+|.||...|.+|..
T Consensus 180 ~el~CPIcl~~f~DPVt 196 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI 196 (267)
T ss_dssp CCSBCTTTSSBCSSEEE
T ss_pred eeeECcCccCcccCCee
Confidence 34578888888887764
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=34.69 E-value=11 Score=28.08 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.0
Q ss_pred CCceeccccccccccc
Q psy16592 87 METCAICRNHLMDECI 102 (132)
Q Consensus 87 ~D~CAICRn~f~d~Cp 102 (132)
.-.|.||...|.+|.+
T Consensus 208 ~~~c~i~~~~~~dPv~ 223 (281)
T 2c2l_A 208 YLCGKISFELMREPCI 223 (281)
T ss_dssp TTBCTTTCSBCSSEEE
T ss_pred ccCCcCcCCHhcCCeE
Confidence 4678999888877743
No 57
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=31.84 E-value=37 Score=23.30 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=36.6
Q ss_pred cccccchhhHH---HHH--HHHHHHHHHHHHhHhhhhhhccccccccCCCCCCCcccEEEEE-EEEEEEeE
Q psy16592 18 QTFSRSTWPIM---RKL--QIQELINEELQKMKEDRELNRTYKKVLDLRSEYPDVPRFTVRK-FNAVALWS 82 (132)
Q Consensus 18 ~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RfkIKk-WnAVA~Ws 82 (132)
-.|+.+.|--+ +|+ ++++.|++-|..+.++ |........+........-++.|.. |..|+.+.
T Consensus 15 i~ft~~A~kdl~~w~kldk~~~krI~~~I~~l~~n--P~~g~gK~e~Lkg~l~g~~s~RI~~~yRivy~i~ 83 (96)
T 3oei_C 15 VNFDPDAWEDFLFWLAADRKTARRITRLIGEIQRD--PFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAG 83 (96)
T ss_dssp EEECHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC--TTSSTTCCEECCGGGTTCEEEESSSSCEEEEEEC
T ss_pred EEECHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhC--CCcCCCchhhcCCCCCCcEEEECCCCEEEEEEEE
Confidence 45888888877 555 6778888888776643 3322222233333333455666655 66666554
No 58
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=27.15 E-value=17 Score=22.36 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=10.2
Q ss_pred ecCCCceeccccc
Q psy16592 84 DMDMETCAICRNH 96 (132)
Q Consensus 84 Di~~D~CAICRn~ 96 (132)
|+.++.|.||+..
T Consensus 2 d~~~~~C~vC~~~ 14 (60)
T 2puy_A 2 MIHEDFCSVCRKS 14 (60)
T ss_dssp CCCCSSCTTTCCC
T ss_pred CCCCCCCcCCCCC
Confidence 5678899999864
No 59
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=25.10 E-value=40 Score=25.79 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhccccccccCCCC
Q psy16592 29 RKLQIQELINEELQKMKEDRELNRTYKKVLDLRSE 63 (132)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (132)
-+-++++||+++|++..+|.--..-+|..+.++..
T Consensus 5 ~~~~v~~~v~~~l~~~~~D~~g~~DyAl~s~Ga~I 39 (198)
T 4dxt_A 5 TEEQVHHIVKQALQRYSEDRIGLADYALESGGASV 39 (198)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTCCCCTTCGGGTCEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCcCeEcccCCcEE
Confidence 35689999999999999999877777777766544
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=21.63 E-value=26 Score=26.63 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=11.3
Q ss_pred CCceeccccccccccc
Q psy16592 87 METCAICRNHLMDECI 102 (132)
Q Consensus 87 ~D~CAICRn~f~d~Cp 102 (132)
.-.|.||...|.+|.+
T Consensus 106 ~f~CPI~~elm~DPV~ 121 (179)
T 2f42_A 106 YLCGKISFELMREPCI 121 (179)
T ss_dssp GGBCTTTCSBCSSEEE
T ss_pred hhcccCccccCCCCeE
Confidence 4578888887777644
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.07 E-value=37 Score=22.17 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=8.8
Q ss_pred CCceeccccccccc
Q psy16592 87 METCAICRNHLMDE 100 (132)
Q Consensus 87 ~D~CAICRn~f~d~ 100 (132)
.-.|.||...|.++
T Consensus 7 ~~~CPI~~~~~~dP 20 (94)
T 2yu4_A 7 GFTCPITKEEMKKP 20 (94)
T ss_dssp CCBCTTTCSBCSSE
T ss_pred EeECcCcCchhcCC
Confidence 34677777666554
Done!