RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16592
(132 letters)
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 57.8 bits (139), Expect = 9e-13
Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 68 PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA A CTVAW
Sbjct: 2 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE--CTVAW 54
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 27.3 bits (59), Expect = 0.56
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 34 QELINEELQKMKEDRELNRTYKK 56
+N + K+ E L++ K
Sbjct: 229 GNAVNLAVLKLNEQGLLDKLKNK 251
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima
[TaxId: 2336]}
Length = 572
Score = 27.3 bits (59), Expect = 0.60
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 45 KEDRELNRTYKKVLDLRSEYPD 66
DR + KK++ +R E+ D
Sbjct: 547 SPDRGVLNFIKKLIKVRHEFLD 568
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 27.3 bits (60), Expect = 0.67
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 32 QIQELINEELQKMKEDRELNRTYKKVLDLRSEYP 65
++ + + L + ++ + R KVLD+ + YP
Sbjct: 380 ELAGWMCDVLDSINDEAVIERIKGKVLDICARYP 413
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 26.9 bits (58), Expect = 0.83
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 6 EPFHKKPKTPSAQTFSRSTWPIMRKL--QIQELINEELQKMKEDRELNRTYKK 56
+ K S F+ + + I + + I+ L + D E+
Sbjct: 218 DEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETL 270
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 26.6 bits (57), Expect = 0.87
Identities = 4/25 (16%), Positives = 15/25 (60%)
Query: 32 QIQELINEELQKMKEDRELNRTYKK 56
+++ ++ L ++++D ++ KK
Sbjct: 205 ELKAAFDKALTELRQDGTYDKMAKK 229
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 26.7 bits (57), Expect = 0.99
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 34 QELINEELQKMKEDRELNRTYKK 56
++ I + +++E+ +L+ +K
Sbjct: 221 RDKITIAILQLQEEGKLHMMKEK 243
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 26.2 bits (56), Expect = 1.2
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 32 QIQELINEELQKMKEDRELNRTYKKVL 58
+++E I+ + K+ +++ ++ Y + L
Sbjct: 205 ELKEFIDNLIIKLGQEQFFHKAYDETL 231
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 26.2 bits (56), Expect = 1.2
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 34 QELINEELQKMKEDRELNRTYKK 56
++ ++ + K E+ + K
Sbjct: 258 KQNVSLSILKSHENGFMEDLDKT 280
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 26.1 bits (56), Expect = 1.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 32 QIQELINEELQKMKEDRELNRTYKK 56
++++ +N L+ ++E+ N YKK
Sbjct: 192 ELRDKVNGALKTLRENGTYNEIYKK 216
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 25.9 bits (55), Expect = 1.8
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 32 QIQELINEELQKMKEDRELNRTYKK 56
+Q+ IN E+ + R + ++
Sbjct: 199 PLQKTINVEMLNLLYSRVIAEFTER 223
>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 23.2 bits (50), Expect = 5.7
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 32 QIQELINEELQKMK-EDRELNRTYKKVLDLR 61
QI+ ++L +K ++ + +K +LD R
Sbjct: 32 QIEHYSMDDLASLKIPEQFRHAIWKGILDHR 62
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 24.2 bits (51), Expect = 6.1
Identities = 2/21 (9%), Positives = 8/21 (38%)
Query: 45 KEDRELNRTYKKVLDLRSEYP 65
+ ++++ R +P
Sbjct: 448 TDQSNFYTFAQRLIAFRKAHP 468
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 23.2 bits (50), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 30 KLQIQELINEELQKMKEDRELNRTYK 55
K + E + +ELQ +EDR L R++K
Sbjct: 68 KAGLLERV-KELQAEQEDRAL-RSFK 91
>d1wgba_ b.45.1.2 (A:) Putative flavoprotein TTHA0420 {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 23.6 bits (50), Expect = 8.8
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 109 AQDEPPPNGCTVAWAFSL 126
A+D TV W
Sbjct: 22 AKDGDEVAAGTVNWVTQA 39
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 23.8 bits (50), Expect = 9.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 45 KEDRELNRTYKKVLDLRSEYP 65
K D E+ YK ++ +R E
Sbjct: 378 KIDEEIFSFYKILIKMRKELS 398
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 24.0 bits (50), Expect = 9.4
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 35 ELINEELQKMKEDRELNRTYKKVLDLRSEYP 65
+ + E +++ Y+++ LR P
Sbjct: 529 KDAVATPGE-TELKQMTAFYQELTALRKSSP 558
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 23.9 bits (50), Expect = 9.8
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 42 QKMKEDRELNRTYKKVLDLRSEYP 65
M++++EL++ K+++ LR +Y
Sbjct: 355 DPMQQNKELHQHVKQLIALRKQYR 378
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.414
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,664
Number of extensions: 22443
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 36
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)