RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16594
(110 letters)
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 111 bits (279), Expect = 1e-33
Identities = 52/85 (61%), Positives = 65/85 (76%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
E+ K FTR EV N++KD I N VY+VT +L EHPGGEE+L+EQ G+DATE F D+
Sbjct: 4 EDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDV 63
Query: 63 GHSSDARETMKKFKVGELVPRERTD 87
GHSSDARE MK++KVGELV ER++
Sbjct: 64 GHSSDAREMMKQYKVGELVAEERSN 88
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A
1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A*
1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A*
1u9u_A* 1m20_A* ...
Length = 93
Score = 110 bits (278), Expect = 2e-33
Identities = 41/92 (44%), Positives = 61/92 (66%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D+
Sbjct: 2 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDV 61
Query: 63 GHSSDARETMKKFKVGELVPRERTDKPKTNAS 94
GHS+DARE K F +GEL P +R+ K + S
Sbjct: 62 GHSTDARELSKTFIIGELHPDDRSKITKPSES 93
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport;
HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Length = 104
Score = 109 bits (275), Expect = 5e-33
Identities = 41/98 (41%), Positives = 64/98 (65%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D+
Sbjct: 6 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDV 65
Query: 63 GHSSDARETMKKFKVGELVPRERTDKPKTNASNESSSE 100
GHS+DARE K F +GEL P +R+ K + S ++ +
Sbjct: 66 GHSTDARELSKTFIIGELHPDDRSKITKPSESIITTID 103
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 108 bits (272), Expect = 1e-32
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 1 MVEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFN 60
+ + +EV +S + ++ VY+VT +L EHPGGEE+LLEQ G DA+E F
Sbjct: 5 VETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFE 64
Query: 61 DIGHSSDARETMKKFKVGELVPRERTDK 88
D+GHSSDARE +K++ +G++ P + +
Sbjct: 65 DVGHSSDAREMLKQYYIGDIHPSDLKPE 92
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox,
heme, endoplasmic reticulu flavoprotein, iron,
metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A
{Homo sapiens}
Length = 88
Score = 105 bits (265), Expect = 2e-31
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 1 MVEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFN 60
M T +E+K ++ KD+ I VYNV+ Y+ HPGGE+ L+ G D TE+F+
Sbjct: 1 MKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFD 60
Query: 61 DIGHSSDARETMKKFKVGELVPRERTDK 88
+ + +K+ VG + + K
Sbjct: 61 QVHRWVNYESMLKECLVGRMAIKPAVLK 88
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 102 bits (257), Expect = 4e-30
Identities = 18/90 (20%), Positives = 39/90 (43%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
E+ L +++++++ + D VY++ ++ T+ IL + GED
Sbjct: 21 EKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAA 80
Query: 63 GHSSDARETMKKFKVGELVPRERTDKPKTN 92
D RE+M F VG+ + ++ +
Sbjct: 81 LQFEDTRESMHAFCVGQYLEPDQEGVTIPD 110
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 97.8 bits (244), Expect = 2e-28
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 3 EETKLFTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGE--DATEVF 59
E T ++T++EV S + + + + V++VT ++ HPGG L+ G +
Sbjct: 2 ESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWAL 61
Query: 60 NDIGHSSDARETMKKFKVGEL 80
+ + S RE + ++K+GEL
Sbjct: 62 YAVHNQSHVRELLAQYKIGEL 82
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 94.3 bits (235), Expect = 4e-27
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+FT ++V ++ S D+ + VY++T Y+ HPG ++L G+++TE +
Sbjct: 6 TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKS 65
Query: 64 ----HSSDARETMKKFKVGELVP 82
HSS A ++++ +G L
Sbjct: 66 YGEPHSSLAARLLQRYLIGTLEE 88
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 88.1 bits (219), Expect = 1e-24
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T++EV +++++++ IIYD V+++T++ EHPGG +++L + G+DAT V +
Sbjct: 4 KKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPH 62
Query: 66 SDARET----MKKFKVGEL 80
A + +K+ +G++
Sbjct: 63 VKAADVVMKKLKQTCIGKV 81
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 70.8 bits (174), Expect = 6e-16
Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ + EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL- 65
Query: 64 HSSDARETM--KKFKVGELVPRERTDKPKTNASNESSSE 100
H+ + + + K+G L + + + E
Sbjct: 66 HAPNVIDKYIAPEKKLGPLQGSMPPELVCPPYAPGETKE 104
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 49.1 bits (117), Expect = 2e-08
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 6 KLFTRKEVKD-NSSKDNVVIIYDNGVYNVTNYLTEHPGGEE--ILLEQNGEDATEVFNDI 62
+TR+EV S ++ V + + V++VT+++ HPGG + +L + +
Sbjct: 5 PEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 27.7 bits (62), Expect = 0.63
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 19 KDNVVIIYDNG------VYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
+ +VV I ++G ++N +N T G L E + + G +
Sbjct: 30 QGDVVEIQNDGEVVGYNIFNASNKATLTGNGHIKLTETLVQAFQKAIEAAGFTYKLDADF 89
Query: 73 -KKFKVGELVPRER 85
KF VG + +++
Sbjct: 90 TPKFVVGYVETKDK 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.99
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 16/87 (18%)
Query: 3 EETK-LFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND 61
+ K + +++E+ II + T L L E+ + F +
Sbjct: 40 DMPKSILSKEEIDH--------IIMSKDAVSGTLRLFW-------TLLSKQEEMVQKFVE 84
Query: 62 IGHSSDARETMKKFKVGELVPRERTDK 88
+ + M K + P T
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRM 111
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper;
2.00A {Thermoproteus tenax}
Length = 148
Score = 27.0 bits (59), Expect = 1.2
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 1 MVEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEH-PGGEE------------IL 47
+ EE + R E+ K V+I ++ G + + PGG L
Sbjct: 5 LREEERGEVRSELITKGEKKLVLIRWNTGKTSAGRLFGRYGPGGRPEFFKLLFGAVAGSL 64
Query: 48 LEQNGEDATEVFNDIGHSSDARET-------MKKFKVGELVPRERTDK 88
EQ G D +FN I S RET +KK+ E VPR ++
Sbjct: 65 REQFGPDGENIFNRIRDSEKFRETSRELFDGLKKWFFEEAVPRYNLER 112
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY,
HISF, half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 25.2 bits (56), Expect = 5.3
Identities = 3/18 (16%), Positives = 3/18 (16%)
Query: 55 ATEVFNDIGHSSDARETM 72
V DI
Sbjct: 26 PDIVTMDITMPEMNGIDA 43
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 24.9 bits (55), Expect = 5.7
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 42 GGEEILLEQNGEDATEVFNDIGHSSDARETMKKF 75
E L N E+ V S + + F
Sbjct: 241 REREKLHAVNAEEC-NVLQGRWLSDECTNAVVNF 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.128 0.344
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,551,901
Number of extensions: 82910
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 28
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.9 bits)