RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16594
(110 letters)
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId:
9913]}
Length = 88
Score = 90.7 bits (225), Expect = 4e-26
Identities = 39/84 (46%), Positives = 58/84 (69%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D+
Sbjct: 2 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDV 61
Query: 63 GHSSDARETMKKFKVGELVPRERT 86
GHS+DARE K F +GEL P +R+
Sbjct: 62 GHSTDARELSKTFIIGELHPDDRS 85
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 89.9 bits (223), Expect = 7e-26
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG-- 63
+FT ++V ++ S D+ + VY++T Y+ HPG ++L G+++TE +
Sbjct: 3 PVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYG 62
Query: 64 --HSSDARETMKKFKVGEL 80
HSS A ++++ +G L
Sbjct: 63 EPHSSLAARLLQRYLIGTL 81
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 87.3 bits (216), Expect = 1e-24
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
+ +EV ++ + ++ VY++T +L+EHPGGEEILLEQ G DATE F DIGHS
Sbjct: 5 TYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHS 64
Query: 66 SDARETMKKFKVGELVPRERTDKP 89
DARE +K++ +G++ P + KP
Sbjct: 65 PDAREMLKQYYIGDVHPNDL--KP 86
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 82.3 bits (203), Expect = 7e-23
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 5 TKLFTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFN--D 61
T ++T++EV S + + + + V++VT ++ HPGG L+ G +
Sbjct: 2 THIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYA 61
Query: 62 IGHSSDARETMKKFKVGEL 80
+ + S RE + ++K+GEL
Sbjct: 62 VHNQSHVRELLAQYKIGEL 80
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 91
Score = 81.9 bits (202), Expect = 2e-22
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 7 LFTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFN--DIG 63
+TR+EV + S ++ V + + V++VT+++ HPGG + +L G + +
Sbjct: 4 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVH 63
Query: 64 HSSDARETMKKFKVGELVPRERTDKPK 90
E ++++KVGEL P E P
Sbjct: 64 GEPHVLELLQQYKVGELSPDEAPAAPD 90
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 97
Score = 75.4 bits (185), Expect = 7e-20
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
+ + EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F + H+
Sbjct: 9 QKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HA 67
Query: 66 SDARET--MKKFKVGELVPRERTDKPK 90
+ + + K+G L +
Sbjct: 68 PNVIDKYIAPEKKLGPLQGSMPPELVC 94
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 817
Score = 26.0 bits (56), Expect = 1.0
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 35 NYLT-EHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVP 82
NY P +E+ E NG ++++ G + K G+L+
Sbjct: 648 NYKQPHEPQSDEVAKENNGYALEDLYDANG--------VLIAKKGQLLS 688
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 26.0 bits (55), Expect = 1.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 48 LEQNGEDATEVFNDIGHSSDARETMKKF 75
LEQ E EV I S+ E+M K+
Sbjct: 223 LEQANERECEVLRKIWSSAQGIESMLKY 250
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 24.9 bits (53), Expect = 2.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 52 GEDATEVFNDIGHSSDARETMKKFKV 77
GE V ++G+S D MK+
Sbjct: 390 GEHTAAVLQELGYSDDEIAAMKQNHA 415
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 24.4 bits (53), Expect = 3.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 15 DNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEI 46
D + + I+YD G++ L + P G +
Sbjct: 35 DKFRGEEIAILYDPGMF---PALLKDPNGNVV 63
>d1h5wa_ e.27.1.1 (A:) Upper collar protein gp10 (connector protein)
{Bacteriophage phi-29 [TaxId: 10756]}
Length = 268
Score = 23.6 bits (51), Expect = 6.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 14 KDNSSKDNVVIIYDNGVYNVTNYLTEH 40
+D +D V+IY+N + T E
Sbjct: 94 RDMKEEDMGVVIYNNDMAFPTTPTLEL 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.128 0.344
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,997
Number of extensions: 15591
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 16
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (21.9 bits)