Query psy16599
Match_columns 73
No_of_seqs 104 out of 175
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 17:02:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01249 Ribosomal_S21e: Ribos 100.0 6E-49 1.3E-53 253.1 4.2 71 1-72 11-81 (81)
2 KOG3486|consensus 100.0 1.4E-43 3.1E-48 229.2 2.4 73 1-73 11-83 (83)
3 PF06079 Apyrase: Apyrase; In 86.0 0.28 6.1E-06 38.0 0.5 33 2-34 186-233 (291)
4 PTZ00486 apyrase Superfamily; 62.4 4 8.7E-05 32.5 1.1 33 2-34 249-295 (352)
5 PF09765 WD-3: WD-repeat regio 59.2 8.2 0.00018 29.4 2.3 45 8-62 214-258 (291)
6 PLN00037 photosystem II oxygen 50.4 16 0.00034 29.0 2.6 26 19-44 263-288 (313)
7 PF01716 MSP: Manganese-stabil 48.4 19 0.00041 27.6 2.7 27 20-46 196-222 (245)
8 cd05759 Ig2_KIRREL3-like Secon 47.5 11 0.00023 21.9 1.0 21 6-26 62-82 (82)
9 PF10114 PocR: Sensory domain 45.3 27 0.00059 23.0 2.8 32 37-68 94-127 (173)
10 cd04977 Ig1_NCAM-1_like First 44.4 13 0.00028 22.5 1.1 20 6-26 73-92 (92)
11 cd04978 Ig4_L1-NrCAM_like Four 43.3 11 0.00025 21.0 0.7 19 6-26 57-75 (76)
12 PRK00042 tpiA triosephosphate 41.2 43 0.00093 24.9 3.6 50 21-70 57-122 (250)
13 cd05773 Ig8_hNephrin_like Eigh 40.2 16 0.00034 23.0 1.0 21 6-28 86-106 (109)
14 PRK14567 triosephosphate isome 37.8 35 0.00076 25.7 2.7 48 22-69 57-120 (253)
15 TIGR00419 tim triosephosphate 37.4 44 0.00096 24.2 3.1 47 22-70 53-113 (205)
16 cd00311 TIM Triosephosphate is 36.4 61 0.0013 23.9 3.8 51 20-70 54-120 (242)
17 cd05854 Ig6_Contactin-2 Sixth 34.0 22 0.00048 21.2 0.9 19 6-26 63-81 (85)
18 cd04970 Ig6_Contactin_like Six 33.6 23 0.00049 20.6 0.9 20 6-27 63-82 (85)
19 PRK04016 DNA-directed RNA poly 31.9 19 0.00041 22.3 0.4 17 1-17 1-17 (62)
20 cd05723 Ig4_Neogenin Fourth im 31.8 19 0.0004 20.5 0.3 18 6-25 53-70 (71)
21 PRK14565 triosephosphate isome 31.3 74 0.0016 23.7 3.5 50 21-70 56-121 (237)
22 cd05861 Ig1_PDGFR-alphabeta Fr 29.7 27 0.00058 20.7 0.8 22 6-27 62-83 (84)
23 PLN02561 triosephosphate isome 29.6 54 0.0012 24.6 2.6 49 22-70 60-124 (253)
24 cd05763 Ig_1 Subgroup of the i 29.5 25 0.00054 19.9 0.6 19 6-26 56-74 (75)
25 PRK14890 putative Zn-ribbon RN 27.3 45 0.00098 20.5 1.5 19 2-20 5-23 (59)
26 PTZ00333 triosephosphate isome 27.3 94 0.002 23.2 3.5 50 21-70 60-125 (255)
27 TIGR02892 spore_yabP sporulati 26.2 91 0.002 19.9 2.8 40 24-63 43-84 (85)
28 cd05730 Ig3_NCAM-1_like Third 25.9 35 0.00076 20.1 0.9 19 6-26 74-92 (95)
29 cd05876 Ig3_L1-CAM Third immun 25.5 35 0.00075 19.3 0.7 19 6-26 52-70 (71)
30 PF10500 SR-25: Nuclear RNA-sp 25.5 34 0.00074 25.9 0.9 38 27-68 174-215 (225)
31 PHA02579 7 baseplate wedge sub 25.1 36 0.00079 30.6 1.1 39 19-57 271-312 (1030)
32 cd05725 Ig3_Robo Third immunog 24.9 34 0.00073 19.0 0.6 18 6-25 51-68 (69)
33 PRK02289 4-oxalocrotonate taut 24.2 58 0.0012 18.5 1.5 26 17-51 34-59 (60)
34 cd05743 Ig_Perlecan_D2_like Im 22.9 33 0.00071 19.7 0.3 20 6-25 58-77 (78)
35 PF08435 Calici_coat_C: Calici 22.8 54 0.0012 24.7 1.5 25 20-44 158-185 (230)
36 cd05858 Ig3_FGFR-2 Third immun 22.6 53 0.0012 19.3 1.2 19 6-26 71-89 (90)
37 PF01194 RNA_pol_N: RNA polyme 22.5 37 0.0008 20.8 0.5 17 1-17 1-17 (60)
38 TIGR00223 panD L-aspartate-alp 22.2 93 0.002 21.7 2.5 21 23-48 43-63 (126)
39 PLN02429 triosephosphate isome 21.8 1.3E+02 0.0029 23.5 3.5 49 22-70 119-183 (315)
40 PF10929 DUF2811: Protein of u 21.5 38 0.00082 20.7 0.4 20 44-63 33-52 (57)
41 PF07887 Calmodulin_bind: Calm 21.3 87 0.0019 24.5 2.4 44 9-54 15-63 (299)
42 PF09000 Cytotoxic: Cytotoxic; 21.3 64 0.0014 21.1 1.5 14 25-38 62-75 (85)
43 cd05746 Ig4_Peroxidasin Fourth 21.0 41 0.00089 18.8 0.5 17 6-24 52-68 (69)
44 COG2888 Predicted Zn-ribbon RN 20.9 64 0.0014 20.1 1.3 20 3-22 8-27 (61)
45 PRK05449 aspartate alpha-decar 20.7 1E+02 0.0022 21.5 2.4 21 23-48 43-63 (126)
46 PF07976 Phe_hydrox_dim: Pheno 20.5 76 0.0016 21.8 1.8 27 36-63 58-84 (169)
47 PF14858 DUF4486: Domain of un 20.1 34 0.00073 28.9 -0.1 29 35-63 147-175 (542)
No 1
>PF01249 Ribosomal_S21e: Ribosomal protein S21e ; InterPro: IPR001931 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 82 to 87 amino acids. The amino termini are all N alpha-acetylated. The N-terminal halves of the protein molecules are highly conserved in contrast to the carboxy-terminal parts [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_V 3U5C_V 3IZB_T 2XZN_Z 2XZM_Z 3IZ6_T.
Probab=100.00 E-value=6e-49 Score=253.10 Aligned_cols=71 Identities=62% Similarity=0.949 Sum_probs=66.6
Q ss_pred CcccccccccCCccccCCcceeeeeeeeecCCCceeecCeeEEEEehhhhhcccchHHHHHHHHHcCccccC
Q psy16599 1 MVSLTRSSASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKDDGIIAKN 72 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~AkDHaSVQInva~vd~~~G~~tg~~~tyai~G~iR~~GesD~~lnrL~~~~g~~~~~ 72 (73)
+|||||||||||||+|||||||||||++||| +|+|||+++||||||+||+|||||+||||||+++|++++|
T Consensus 11 lYiPRKCS~TnriI~aKDHaSvQinv~~vd~-~G~~~g~~~t~ai~G~iR~~GesD~~l~rL~~~~g~l~~~ 81 (81)
T PF01249_consen 11 LYIPRKCSATNRIISAKDHASVQINVADVDE-NGRFTGQFKTYAICGFIRRMGESDDALNRLAKKDGLLSKN 81 (81)
T ss_dssp SSHHHCHTTTHHCHHTTSTTSEEEEEEEE-S-SS-EEEEEEEEEEHHHHHHTTHHHHHHHHHHHHTCCCSS-
T ss_pred EeccccccccCCccccCCceeEEEEeeeecC-cccCcCCceEEEEechHhhCcchhHHHHHHHHHhCcccCC
Confidence 5999999999999999999999999999997 5999999999999999999999999999999999999986
No 2
>KOG3486|consensus
Probab=100.00 E-value=1.4e-43 Score=229.20 Aligned_cols=73 Identities=49% Similarity=0.786 Sum_probs=69.8
Q ss_pred CcccccccccCCccccCCcceeeeeeeeecCCCceeecCeeEEEEehhhhhcccchHHHHHHHHHcCccccCC
Q psy16599 1 MVSLTRSSASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKDDGIIAKNY 73 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~AkDHaSVQInva~vd~~~G~~tg~~~tyai~G~iR~~GesD~~lnrL~~~~g~~~~~~ 73 (73)
+|||||||+|||||.||||||||||+++||++-|.|+|+++||||||+||+|||||++++||+++||++++++
T Consensus 11 LYvPrKcS~sNriI~aKDHaSVQ~N~~~vd~~g~~~~g~~ttyAlcg~vr~~gesd~~~~rl~~~~~~~~~~~ 83 (83)
T KOG3486|consen 11 LYVPRKCSATNRIITAKDHASVQLNIGHVDAEGGLYTGQFTTYALCGFVRRMGESDSGVDRLAQKDGVEAKQW 83 (83)
T ss_pred EEecccccccceeeecccchheeecccccccccCccCCceehHHHHHHHHHcCCCcchHHHHHHhcccccccC
Confidence 5999999999999999999999999999998757799999999999999999999999999999999998875
No 3
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=86.00 E-value=0.28 Score=38.02 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=18.4
Q ss_pred ccccccc------------ccCCcccc-CCcceeeee-ee-eecCCCc
Q psy16599 2 VSLTRSS------------ASNRIIAA-KDHASIQIA-IA-DVDPATG 34 (73)
Q Consensus 2 ~iPRKCS------------aTnRiI~A-kDHaSVQIn-va-~vd~~~G 34 (73)
++||+|| .||-||.| .|..+|+.. |+ .++|..|
T Consensus 186 FLPRr~S~e~Y~e~~DE~~G~N~li~a~edF~~i~v~~ig~~~~p~~G 233 (291)
T PF06079_consen 186 FLPRRCSKEPYDETADERRGCNLLISADEDFSDIKVIRIGEQLDPTRG 233 (291)
T ss_dssp E--SEEESS---HHHHTT-B--EEEEE-TTSSSEEEEE-S----TTEE
T ss_pred EeccccccccccchhhhhcCccEEEEeccCcceeEEEEeCCccCcccc
Confidence 5899999 68999988 566777643 66 7888555
No 4
>PTZ00486 apyrase Superfamily; Provisional
Probab=62.43 E-value=4 Score=32.55 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=21.7
Q ss_pred cccccccc------------cCCccccCCc-ceeee-eeeeecCCCc
Q psy16599 2 VSLTRSSA------------SNRIIAAKDH-ASIQI-AIADVDPATG 34 (73)
Q Consensus 2 ~iPRKCSa------------TnRiI~AkDH-aSVQI-nva~vd~~~G 34 (73)
++|||||- +|-||.|.+| ..|+. .++..+|..|
T Consensus 249 FlPRr~S~e~Yde~~DE~~G~N~ii~~de~F~~i~vi~i~~~~p~~G 295 (352)
T PTZ00486 249 FLPRRVSNEPYDEEKDEYRGSNYIIICDEDFQNPRVIKDPQYDPERG 295 (352)
T ss_pred EeccccCcccccchhhhhcCCcEEEEecccccceEEEecCCCCCCcc
Confidence 58999994 7889886644 44542 3556666444
No 5
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=59.21 E-value=8.2 Score=29.43 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=32.4
Q ss_pred cccCCccccCCcceeeeeeeeecCCCceeecCeeEEEEehhhhhcccchHHHHHH
Q psy16599 8 SASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRL 62 (73)
Q Consensus 8 SaTnRiI~AkDHaSVQInva~vd~~~G~~tg~~~tyai~G~iR~~GesD~~lnrL 62 (73)
+.|-|-|+-.+|.||||.| ||...++-.+.....+.|. |..++.|
T Consensus 214 ~~~~RrI~l~~~~sl~i~v---dP~~P~~~p~~~~l~f~G~-------~~~v~~l 258 (291)
T PF09765_consen 214 SDTYRRIALGNNVSLKIEV---DPRHPRMLPECRFLGFIGP-------DHEVNPL 258 (291)
T ss_dssp T--EEEEEEETTEEEEEEE----TTSTTSTTCCEEECEESS-------HHHHHHH
T ss_pred cccEEEEEECCceEEEEEE---cCCCCccCcccccccccCC-------HHHHHHH
Confidence 3467999999999999987 6666676666667777776 6666665
No 6
>PLN00037 photosystem II oxygen-evolving enhancer protein 1; Provisional
Probab=50.41 E-value=16 Score=28.99 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=21.8
Q ss_pred cceeeeeeeeecCCCceeecCeeEEE
Q psy16599 19 HASIQIAIADVDPATGRTTDNLKMYA 44 (73)
Q Consensus 19 HaSVQInva~vd~~~G~~tg~~~tya 44 (73)
..++.+.|++||++||.+-|-|..--
T Consensus 263 ~G~i~l~V~kVd~~TGEiaGvF~s~Q 288 (313)
T PLN00037 263 TGNITLSVAKSNPETGEIAGVFESIQ 288 (313)
T ss_pred cceEEEEEEeecCCCCeEEEEEEeeC
Confidence 46788999999999999999876543
No 7
>PF01716 MSP: Manganese-stabilising protein / photosystem II polypeptide; InterPro: IPR002628 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbO, which appears to be the most important extrinsic protein for oxygen evolution. PsbO lies closest to the Mn cluster where water oxidation occurs, and has a stabilising effect on the Mn cluster. As a result, PsbO is often referred to as the Mn-stabilising protein (MSP), although none of its amino acids are likely ligands for Mn. Calcium ions were found to modify the conformation of PsbO in solution [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 3PRR_O 4FBY_f 3BZ1_O 3KZI_O 1S5L_o 2AXT_o 3BZ2_O 3PRQ_O 3ARC_O 3A0B_O ....
Probab=48.36 E-value=19 Score=27.63 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.2
Q ss_pred ceeeeeeeeecCCCceeecCeeEEEEe
Q psy16599 20 ASIQIAIADVDPATGRTTDNLKMYAIC 46 (73)
Q Consensus 20 aSVQInva~vd~~~G~~tg~~~tyai~ 46 (73)
.+|-+.|++||++||.+-|-|..--.+
T Consensus 196 G~i~l~V~kVd~~TGEiaGvF~s~QpS 222 (245)
T PF01716_consen 196 GSISLSVAKVDPETGEIAGVFESIQPS 222 (245)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEB
T ss_pred ceEEEEEEeECCCcCcEEEEEEeeCCC
Confidence 467889999999999999988765544
No 8
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=47.51 E-value=11 Score=21.92 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.1
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.++|.-+..-=++|++++|
T Consensus 62 ~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 62 TCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEcCccCCCCcEEEEEEcC
Confidence 588888777776788888875
No 9
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=45.30 E-value=27 Score=23.00 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=25.4
Q ss_pred ecCeeEEEEehhhhhcccchHH--HHHHHHHcCc
Q psy16599 37 TDNLKMYAICGQIRRMGESDDC--IGRLAKDDGI 68 (73)
Q Consensus 37 tg~~~tyai~G~iR~~GesD~~--lnrL~~~~g~ 68 (73)
.|+.--|.++|.++-....++. +.+++++.|+
T Consensus 94 ~g~~iG~i~~G~v~~~~~~~~~~~~~~~a~~~~~ 127 (173)
T PF10114_consen 94 DGEYIGYIICGQVLLEDPDDESELIRELAKKYGI 127 (173)
T ss_pred CCEEEEEEEEEEeecCCCchhHHHHHHHHHHcCC
Confidence 3455558899999999888887 8888887765
No 10
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=44.42 E-value=13 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=14.5
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
+|.|+|..-. +..+||++.|
T Consensus 73 ~C~A~N~~g~-~~~~sv~l~~ 92 (92)
T cd04977 73 KCVATDAKGT-ESEATVNLKI 92 (92)
T ss_pred EEEEEcCCCC-cceeEEEEEC
Confidence 6999997644 5677887764
No 11
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.25 E-value=11 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=12.3
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.|+|. ...+.++++++|
T Consensus 57 ~C~A~N~--~G~~~~~~~l~V 75 (76)
T cd04978 57 QCNASNV--HGYLLANAFVHV 75 (76)
T ss_pred EEEEEcc--CCeEEEeEEEEE
Confidence 5777777 344566777665
No 12
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=41.20 E-value=43 Score=24.89 Aligned_cols=50 Identities=28% Similarity=0.555 Sum_probs=35.1
Q ss_pred eeeeeeeeecCC-CceeecCe---------eEEEEehhhhhc---ccchHHHHH---HHHHcCccc
Q psy16599 21 SIQIAIADVDPA-TGRTTDNL---------KMYAICGQIRRM---GESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 21 SVQInva~vd~~-~G~~tg~~---------~tyai~G~iR~~---GesD~~lnr---L~~~~g~~~ 70 (73)
.+++---++++. .|.|||+. -.|.|-|-=-|+ ||+|+.+++ .|.+.||.+
T Consensus 57 ~i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~p 122 (250)
T PRK00042 57 NIKLGAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTP 122 (250)
T ss_pred CeEEEecccccccCCCccCccCHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEE
Confidence 455555566653 49999987 467777754443 999999998 557777653
No 13
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=40.20 E-value=16 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=16.0
Q ss_pred cccccCCccccCCcceeeeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAIAD 28 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva~ 28 (73)
.|.|+|.+ ..|.+++|+.+..
T Consensus 86 ~C~A~N~~--G~~~~~i~L~~~~ 106 (109)
T cd05773 86 TCTAHNSL--GEDSLDIQLVSTS 106 (109)
T ss_pred EEEEEeCC--ccCcEEEEEEecC
Confidence 68899987 5578888887753
No 14
>PRK14567 triosephosphate isomerase; Provisional
Probab=37.81 E-value=35 Score=25.66 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=31.5
Q ss_pred eeeeeeeecC-CCceeecCe---------eEEEEehhhhhc---ccchHHHHH---HHHHcCcc
Q psy16599 22 IQIAIADVDP-ATGRTTDNL---------KMYAICGQIRRM---GESDDCIGR---LAKDDGII 69 (73)
Q Consensus 22 VQInva~vd~-~~G~~tg~~---------~tyai~G~iR~~---GesD~~lnr---L~~~~g~~ 69 (73)
+.+---++++ ..|.|||+. -.|+|-|-=-|+ ||+|+-+++ -|.+.||.
T Consensus 57 i~vgAQnv~~~~~Ga~TGEvS~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~ 120 (253)
T PRK14567 57 VGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTIT 120 (253)
T ss_pred CEEEccccccccCCCccCcCCHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCE
Confidence 3333334443 259999986 467777755444 999999988 45667764
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=37.44 E-value=44 Score=24.19 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=30.3
Q ss_pred eeeeeeeecCC-CceeecCee---------EEEEehh-hhhcccchHHHHH---HHHHcCccc
Q psy16599 22 IQIAIADVDPA-TGRTTDNLK---------MYAICGQ-IRRMGESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 22 VQInva~vd~~-~G~~tg~~~---------tyai~G~-iR~~GesD~~lnr---L~~~~g~~~ 70 (73)
+.+---+++++ .|.|||+.. .|.|-|- =||.||+| +++ .|.+.||.+
T Consensus 53 i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERRf~Etd--i~~Kv~~a~~~gl~~ 113 (205)
T TIGR00419 53 IPVYAQHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD--IEKKIARLKELGLTS 113 (205)
T ss_pred ceEEecccccccCCCccCcCCHHHHHHcCCCEEEECcccCCCCccH--HHHHHHHHHHCCCEE
Confidence 44444455653 499999974 6776663 35589999 776 446666643
No 16
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=36.38 E-value=61 Score=23.92 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=35.1
Q ss_pred ceeeeeeeeecCCC-ceeecCe---------eEEEEehhhhhc---ccchHHHHH---HHHHcCccc
Q psy16599 20 ASIQIAIADVDPAT-GRTTDNL---------KMYAICGQIRRM---GESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 20 aSVQInva~vd~~~-G~~tg~~---------~tyai~G~iR~~---GesD~~lnr---L~~~~g~~~ 70 (73)
+.+.+---++++.. |.|||+. -.|.|-|-=-|+ ||+|+-+++ .|.+.||.+
T Consensus 54 ~~i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~p 120 (242)
T cd00311 54 SKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTP 120 (242)
T ss_pred CCeEEEecccccccCCCCcCcCCHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEE
Confidence 34555555566543 9999987 467777765555 899999998 446677653
No 17
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=33.98 E-value=22 Score=21.22 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=14.0
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
+|.|+|.+ ..+.++.++.|
T Consensus 63 tC~A~n~~--g~~~~~~~L~V 81 (85)
T cd05854 63 TCTAQTVV--DSASASATLVV 81 (85)
T ss_pred EEEEecCC--CCEEEEEEEEE
Confidence 69999966 56667777766
No 18
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=33.64 E-value=23 Score=20.63 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=14.1
Q ss_pred cccccCCccccCCcceeeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAIA 27 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva 27 (73)
+|.++|.+ ..+.++.+|.|.
T Consensus 63 ~C~a~n~~--g~~~~~~~l~V~ 82 (85)
T cd04970 63 TCTAQTVV--DSLSASADLIVR 82 (85)
T ss_pred EEEEecCC--CcEEEEEEEEEE
Confidence 69999966 345677777764
No 19
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=31.85 E-value=19 Score=22.31 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.8
Q ss_pred CcccccccccCCccccC
Q psy16599 1 MVSLTRSSASNRIIAAK 17 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~Ak 17 (73)
|.||=.|..-+++|+.+
T Consensus 1 MiiPvRCFTCGkvi~~~ 17 (62)
T PRK04016 1 MMIPVRCFTCGKVIAEK 17 (62)
T ss_pred CCCCeEecCCCCChHHH
Confidence 78999999999999863
No 20
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=31.79 E-value=19 Score=20.50 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=9.6
Q ss_pred cccccCCccccCCcceeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIA 25 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQIn 25 (73)
+|.|+|.+ ....+++|+.
T Consensus 53 ~C~A~N~~--G~~~~~~~L~ 70 (71)
T cd05723 53 QCIAENDV--GNVQASAQLI 70 (71)
T ss_pred EEEEEcCC--CEEEEEEEEE
Confidence 47777765 2234455544
No 21
>PRK14565 triosephosphate isomerase; Provisional
Probab=31.32 E-value=74 Score=23.68 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=34.1
Q ss_pred eeeeeeeeecCC-CceeecCe---------eEEEEehhhhh---cccchHHHHH---HHHHcCccc
Q psy16599 21 SIQIAIADVDPA-TGRTTDNL---------KMYAICGQIRR---MGESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 21 SVQInva~vd~~-~G~~tg~~---------~tyai~G~iR~---~GesD~~lnr---L~~~~g~~~ 70 (73)
.+++---++++. .|.|||+. -.|+|-|---| .||.|+.+++ .|.+.||.+
T Consensus 56 ~i~vgAQnv~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~p 121 (237)
T PRK14565 56 NIKLGAQNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIP 121 (237)
T ss_pred CceEEecccccccCCCccCccCHHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEE
Confidence 455555566653 49999987 46887775433 3999999976 557777653
No 22
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=29.65 E-value=27 Score=20.73 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=15.6
Q ss_pred cccccCCccccCCcceeeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAIA 27 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva 27 (73)
+|.++|..=...+.+||.|.|-
T Consensus 62 ~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 62 ECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECccCcceeEEEEEEEe
Confidence 5888877555567788887764
No 23
>PLN02561 triosephosphate isomerase
Probab=29.63 E-value=54 Score=24.59 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=32.9
Q ss_pred eeeeeeeecCC-CceeecCe---------eEEEEehhhhhc---ccchHHHHH---HHHHcCccc
Q psy16599 22 IQIAIADVDPA-TGRTTDNL---------KMYAICGQIRRM---GESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 22 VQInva~vd~~-~G~~tg~~---------~tyai~G~iR~~---GesD~~lnr---L~~~~g~~~ 70 (73)
+.+---+++++ .|.|||+. -.|+|-|---|+ ||+|+-+++ -|.+.||.+
T Consensus 60 i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~p 124 (253)
T PLN02561 60 FQVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKV 124 (253)
T ss_pred CeEEeccccCcCCCCccCcCCHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEE
Confidence 44444456653 49999986 367777754332 999999998 456677643
No 24
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=29.45 E-value=25 Score=19.90 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=10.6
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.|+|.. ..+.++++++|
T Consensus 56 ~C~A~N~~--G~~~~~~~l~V 74 (75)
T cd05763 56 SCTAQNTA--GSISANATLTV 74 (75)
T ss_pred EEEEEcCC--CEEEeeEEEEE
Confidence 47777764 23455555554
No 25
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=27.25 E-value=45 Score=20.49 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.4
Q ss_pred cccccccccCCccccCCcc
Q psy16599 2 VSLTRSSASNRIIAAKDHA 20 (73)
Q Consensus 2 ~iPRKCSaTnRiI~AkDHa 20 (73)
.-|.+|+..|+.|+..+++
T Consensus 5 ~~~~~CtSCg~~i~~~~~~ 23 (59)
T PRK14890 5 MEPPKCTSCGIEIAPREKA 23 (59)
T ss_pred ccCccccCCCCcccCCCcc
Confidence 3477999999999999986
No 26
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.25 E-value=94 Score=23.20 Aligned_cols=50 Identities=22% Similarity=0.471 Sum_probs=32.6
Q ss_pred eeeeeeeeecCC-CceeecCee---------EEEEehhhhh---cccchHHHHH---HHHHcCccc
Q psy16599 21 SIQIAIADVDPA-TGRTTDNLK---------MYAICGQIRR---MGESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 21 SVQInva~vd~~-~G~~tg~~~---------tyai~G~iR~---~GesD~~lnr---L~~~~g~~~ 70 (73)
.+.+---++++. .|.|||+.. .|+|-|-=-| .||+|+-+++ -|.+.||.+
T Consensus 60 ~i~vgAQn~~~~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~p 125 (255)
T PTZ00333 60 NFKISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKV 125 (255)
T ss_pred CeeEEccccccccCCCccCcCCHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEE
Confidence 344444455554 399999874 5666664322 2999999999 456677653
No 27
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=26.17 E-value=91 Score=19.91 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=24.0
Q ss_pred eeeeeecCCCce--eecCeeEEEEehhhhhcccchHHHHHHH
Q psy16599 24 IAIADVDPATGR--TTDNLKMYAICGQIRRMGESDDCIGRLA 63 (73)
Q Consensus 24 Inva~vd~~~G~--~tg~~~tyai~G~iR~~GesD~~lnrL~ 63 (73)
+.|..+|+++|. +.|.......+-.-..++.++.-+.||+
T Consensus 43 L~I~~l~~E~Gev~I~G~I~si~Y~~~~~~~~~~~~~~~rlf 84 (85)
T TIGR02892 43 LKMNKLDVENGQVIIKGFISELTYSEGNGSKEKGKGFFSRLF 84 (85)
T ss_pred eEeeEEeccccEEEEEEEEEEEEEcccccccccccchhHHhc
Confidence 456778877777 4777776666631122344445667665
No 28
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=25.94 E-value=35 Score=20.09 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=12.6
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.|+|..= .+.+++++.|
T Consensus 74 ~C~a~N~~G--~~~~~~~L~V 92 (95)
T cd05730 74 TCIAENKAG--EQEAEIHLKV 92 (95)
T ss_pred EEEEEcCCC--eEEEEEEEEE
Confidence 588888873 3566666654
No 29
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=25.53 E-value=35 Score=19.34 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=11.1
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.|+|.+=. +-+++++.|
T Consensus 52 ~C~a~N~~G~--~~~~~~l~V 70 (71)
T cd05876 52 VCTAENSEGS--ARHHYTVTV 70 (71)
T ss_pred EEEEEcCCCe--EEEEEEEEE
Confidence 5788887633 344555544
No 30
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=25.45 E-value=34 Score=25.93 Aligned_cols=38 Identities=37% Similarity=0.436 Sum_probs=19.8
Q ss_pred eeecCCCceeecCeeEEEEehhhhh---cccchHHHHHHH-HHcCc
Q psy16599 27 ADVDPATGRTTDNLKMYAICGQIRR---MGESDDCIGRLA-KDDGI 68 (73)
Q Consensus 27 a~vd~~~G~~tg~~~tyai~G~iR~---~GesD~~lnrL~-~~~g~ 68 (73)
-.|||+||++-- +-=.|.|=. --|-+-.||..| .-||+
T Consensus 174 rVvDpETGRtRL----IkGdGEilEEIVSkERHkeINkqAT~gDG~ 215 (225)
T PF10500_consen 174 RVVDPETGRTRL----IKGDGEILEEIVSKERHKEINKQATRGDGL 215 (225)
T ss_pred eeecCCCCceee----ecccchHHHHHhhHHHHHHHHHhhcccchH
Confidence 368999998531 111122110 113456777777 44665
No 31
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=25.12 E-value=36 Score=30.62 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=31.7
Q ss_pred cceeeeeeeeecCCCce-e-ecCeeEEE-EehhhhhcccchH
Q psy16599 19 HASIQIAIADVDPATGR-T-TDNLKMYA-ICGQIRRMGESDD 57 (73)
Q Consensus 19 HaSVQInva~vd~~~G~-~-tg~~~tya-i~G~iR~~GesD~ 57 (73)
|+|.+|.+++++-+.|. | ..-|.+|| +-|.||+..|+=.
T Consensus 271 fSsddiTFaKlg~~l~lgFdve~F~~ya~LP~~v~~~aEA~a 312 (1030)
T PHA02579 271 FSSDDITFAKLGDDLGLGFDVEIFGTYARLPGDVSRKAEAMA 312 (1030)
T ss_pred ecccceEEEeeccccCCCceeeeecchhhCCcchhhhhhhee
Confidence 68999999999976666 3 56688898 7899999888643
No 32
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=24.88 E-value=34 Score=19.02 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=10.7
Q ss_pred cccccCCccccCCcceeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIA 25 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQIn 25 (73)
.|.++|.+= .+.+++++.
T Consensus 51 ~C~a~N~~G--~~~~~~~l~ 68 (69)
T cd05725 51 TCEAENMVG--KIEASASLT 68 (69)
T ss_pred EEEEEcCCC--cEEEEEEEE
Confidence 588888653 345555554
No 33
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.23 E-value=58 Score=18.54 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=18.4
Q ss_pred CCcceeeeeeeeecCCCceeecCeeEEEEehhhhh
Q psy16599 17 KDHASIQIAIADVDPATGRTTDNLKMYAICGQIRR 51 (73)
Q Consensus 17 kDHaSVQInva~vd~~~G~~tg~~~tyai~G~iR~ 51 (73)
....||.+.|.++++ ..|++.|.++.
T Consensus 34 ~p~~~v~V~i~ev~~---------~~~~~~g~~~~ 59 (60)
T PRK02289 34 APKEAIHVFINDMPE---------GTYYPQGEMKT 59 (60)
T ss_pred cCcceEEEEEEEeCh---------hheEECCEEcC
Confidence 347899999999996 34566665543
No 34
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=22.94 E-value=33 Score=19.74 Aligned_cols=20 Identities=10% Similarity=-0.177 Sum_probs=11.3
Q ss_pred cccccCCccccCCcceeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIA 25 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQIn 25 (73)
.|.++|.+=.+.-.+++++.
T Consensus 58 ~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 58 TCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred EEEEEecCCEEEecccEEEE
Confidence 46666665555555555554
No 35
>PF08435 Calici_coat_C: Calicivirus coat protein C-terminal; InterPro: IPR013643 Bovine calicivirus is a positive-stranded ssRNA viruses that cause gastroenteritis []. The calicivirus genome contains two open reading frames, ORF1 and ORF2 [, ]. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity. The regions of the poly-protein in which these activities lie are similar to proteins produced by the picornaviruses [, ]. ORF2 encodes a structural protein []. This signature finds ORF2, the structural coat protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely those classified as small round structured viruses (SRSVs) and those classed as non-SRSVs. Rabbit hemorrhagic disease virus (RHDV) which causes a highly contagious disease of wild and domestic rabbits belongs to the family Caliciviridae []. The capsid protein self assembles to form an icosahedral capsid with a T=3 symmetry. It is about 38nm in diameter and consists of 180 capsid proteins. The capsid encapsulates the genomic RNA and VP2 proteins and attaches the virion to target cells by binding histo-blood group antigens present on gastroduodenal epithelial cells. The Shell domain (S domain) contains elements essential for the formation of the icosahedron. The Protruding domain (P domain) is divided into sub-domains P1 and P2. An hypervariable region in P2 is thought to play an important role in receptor binding and immune reactivity. This is the calicivirus coat protein (IPR004005 from INTERPRO) C-terminal region. ; PDB: 3D26_B 2ZL6_B 1IHM_B 3BY2_A 3BY1_A 2ZL7_A 2ZL5_A 3LQ6_B 3LQE_A 3SEJ_A ....
Probab=22.83 E-value=54 Score=24.66 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=17.5
Q ss_pred ceeeeeeeee---cCCCceeecCeeEEE
Q psy16599 20 ASIQIAIADV---DPATGRTTDNLKMYA 44 (73)
Q Consensus 20 aSVQInva~v---d~~~G~~tg~~~tya 44 (73)
|-+|=.+|.| ||.|||..+|.|.|-
T Consensus 158 ap~q~~~ALl~YvnpdTgr~LfE~KLy~ 185 (230)
T PF08435_consen 158 APSQGDVALLRYVNPDTGRVLFEAKLYP 185 (230)
T ss_dssp -S-SSSEEEEEEEETTTTEEEEEEEEET
T ss_pred CccccceeEEEEecCCCCCEEEEEEecC
Confidence 3445555554 999999999999873
No 36
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=22.59 E-value=53 Score=19.34 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=12.2
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.|+|.+= .++++.+++|
T Consensus 71 ~C~A~N~~G--~~~~~a~L~V 89 (90)
T cd05858 71 TCLAGNSIG--ISHHSAWLTV 89 (90)
T ss_pred EEEEEeCCC--cccceEEEEE
Confidence 588888663 4566666655
No 37
>PF01194 RNA_pol_N: RNA polymerases N / 8 kDa subunit; InterPro: IPR000268 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. Archaebacterial subunit N (gene rpoN) [] is a small protein of about 8 kDa, it is evolutionary related [] to a 8.3 kDa component shared by all three forms of eukaryotic RNA polymerases (gene RPB10 in yeast and POLR2J in mammals) as well as to African swine fever virus (ASFV) protein CP80R []. There is a conserved region which is located at the N-terminal extremity of these polymerase subunits; this region contains two cysteines that binds a zinc ion [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_N 3HKZ_N 1EF4_A 3H0G_V 2Y0S_N 2R92_J 3M4O_J 3S2D_J 1R9S_J 1Y1W_J ....
Probab=22.51 E-value=37 Score=20.84 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=10.9
Q ss_pred CcccccccccCCccccC
Q psy16599 1 MVSLTRSSASNRIIAAK 17 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~Ak 17 (73)
|.||=.|-.-+++|+.|
T Consensus 1 MiiPVRCFTCGkvi~~~ 17 (60)
T PF01194_consen 1 MIIPVRCFTCGKVIGNK 17 (60)
T ss_dssp ---SSS-STTTSBTCGH
T ss_pred CCCceecCCCCCChhHh
Confidence 67899999999998753
No 38
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=22.16 E-value=93 Score=21.70 Aligned_cols=21 Identities=33% Similarity=0.803 Sum_probs=14.5
Q ss_pred eeeeeeecCCCceeecCeeEEEEehh
Q psy16599 23 QIAIADVDPATGRTTDNLKMYAICGQ 48 (73)
Q Consensus 23 QInva~vd~~~G~~tg~~~tyai~G~ 48 (73)
|+.|..|+ ||. .+.||+|-|.
T Consensus 43 ~V~V~Nv~--NG~---Rf~TYvI~G~ 63 (126)
T TIGR00223 43 KVDIVNVN--NGK---RFSTYAIAGK 63 (126)
T ss_pred EEEEEECC--CCc---EEEEEEEEcC
Confidence 45566666 553 4789999886
No 39
>PLN02429 triosephosphate isomerase
Probab=21.82 E-value=1.3e+02 Score=23.46 Aligned_cols=49 Identities=29% Similarity=0.456 Sum_probs=33.7
Q ss_pred eeeeeeeecCC-CceeecCee---------EEEEehhh--hh-cccchHHHHH---HHHHcCccc
Q psy16599 22 IQIAIADVDPA-TGRTTDNLK---------MYAICGQI--RR-MGESDDCIGR---LAKDDGIIA 70 (73)
Q Consensus 22 VQInva~vd~~-~G~~tg~~~---------tyai~G~i--R~-~GesD~~lnr---L~~~~g~~~ 70 (73)
+++---++++. .|.|||+.. .|+|-|-= |. .||.|+-+++ .|.+.||.+
T Consensus 119 i~vgAQnv~~~~~GayTGEVSa~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~p 183 (315)
T PLN02429 119 IDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGV 183 (315)
T ss_pred CeEEecccCCCCCCCccCcCCHHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEE
Confidence 55555566653 499999974 67777743 22 3999999998 456777653
No 40
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=21.48 E-value=38 Score=20.69 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEehhhhhcccchHHHHHHH
Q psy16599 44 AICGQIRRMGESDDCIGRLA 63 (73)
Q Consensus 44 ai~G~iR~~GesD~~lnrL~ 63 (73)
||+|++=+.|..|-++.|+-
T Consensus 33 ALa~FL~QnG~~~r~~~r~Y 52 (57)
T PF10929_consen 33 ALAGFLLQNGCQDRAVTRVY 52 (57)
T ss_pred HHHHHHHHcCchhHHHHHHH
Confidence 79999999999999999875
No 41
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.
Probab=21.31 E-value=87 Score=24.49 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=30.1
Q ss_pred ccCCccccCCcceeeeeeeeecCCCceeecC-----eeEEEEehhhhhccc
Q psy16599 9 ASNRIIAAKDHASIQIAIADVDPATGRTTDN-----LKMYAICGQIRRMGE 54 (73)
Q Consensus 9 aTnRiI~AkDHaSVQInva~vd~~~G~~tg~-----~~tyai~G~iR~~Ge 54 (73)
+|+.-|.|+|-+++||-+ +|..||.-+|. ....++-|..-.-+.
T Consensus 15 fT~~~i~a~~g~~i~V~l--~d~~~~v~~g~lss~kieIvvLdGdF~~~~~ 63 (299)
T PF07887_consen 15 FTGSKIEAEDGAPIKVAL--VDANTGVTSGPLSSAKIEIVVLDGDFNDEDC 63 (299)
T ss_pred ccCCceEecCCCcEEEEE--EECCCCccCCCCCCcEEEEEEEccccCCCcc
Confidence 688889999999999877 45446654443 455677776655433
No 42
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=21.28 E-value=64 Score=21.14 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=9.5
Q ss_pred eeeeecCCCceeec
Q psy16599 25 AIADVDPATGRTTD 38 (73)
Q Consensus 25 nva~vd~~~G~~tg 38 (73)
-++++||.||.++.
T Consensus 62 HLGe~Dp~TGe~~k 75 (85)
T PF09000_consen 62 HLGEFDPKTGEQIK 75 (85)
T ss_dssp EEEEE-TTTS-EEE
T ss_pred CcccccCCcccCcC
Confidence 47899999998764
No 43
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=20.97 E-value=41 Score=18.84 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=9.1
Q ss_pred cccccCCccccCCcceeee
Q psy16599 6 RSSASNRIIAAKDHASIQI 24 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQI 24 (73)
.|.++|.+ ..+.+|+++
T Consensus 52 ~C~a~N~~--G~~~~~~~L 68 (69)
T cd05746 52 ECVARNTI--GYASVSMVL 68 (69)
T ss_pred EEEEECCC--CcEEEEEEe
Confidence 47777765 234444443
No 44
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=64 Score=20.06 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.6
Q ss_pred ccccccccCCccccCCccee
Q psy16599 3 SLTRSSASNRIIAAKDHASI 22 (73)
Q Consensus 3 iPRKCSaTnRiI~AkDHaSV 22 (73)
.|..|+..++.|+.-.++++
T Consensus 8 ~~~~CtSCg~~i~p~e~~v~ 27 (61)
T COG2888 8 DPPVCTSCGREIAPGETAVK 27 (61)
T ss_pred CCceeccCCCEeccCCceeE
Confidence 47899999999988877753
No 45
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=20.70 E-value=1e+02 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.737 Sum_probs=14.4
Q ss_pred eeeeeeecCCCceeecCeeEEEEehh
Q psy16599 23 QIAIADVDPATGRTTDNLKMYAICGQ 48 (73)
Q Consensus 23 QInva~vd~~~G~~tg~~~tyai~G~ 48 (73)
|+.|..|+ ||. .|.||+|-|.
T Consensus 43 ~V~V~Nv~--NG~---Rf~TYvI~g~ 63 (126)
T PRK05449 43 KVQIVNVN--NGA---RFETYVIAGE 63 (126)
T ss_pred EEEEEECC--CCc---EEEEEEEEcC
Confidence 45566666 553 4789999886
No 46
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=20.50 E-value=76 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.6
Q ss_pred eecCeeEEEEehhhhhcccchHHHHHHH
Q psy16599 36 TTDNLKMYAICGQIRRMGESDDCIGRLA 63 (73)
Q Consensus 36 ~tg~~~tyai~G~iR~~GesD~~lnrL~ 63 (73)
.+|++..|.++|.++.... -+.|..|+
T Consensus 58 sdGrfri~vFagd~~~~~~-~~~l~~l~ 84 (169)
T PF07976_consen 58 SDGRFRILVFAGDISLPEQ-LSRLSALA 84 (169)
T ss_dssp SSS-EEEEEEEETTTTCHC-CCHHHHHH
T ss_pred cCCCEEEEEEeCCCccchh-HHHHHHHH
Confidence 4678999999999999443 24455554
No 47
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=20.08 E-value=34 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.8
Q ss_pred eeecCeeEEEEehhhhhcccchHHHHHHH
Q psy16599 35 RTTDNLKMYAICGQIRRMGESDDCIGRLA 63 (73)
Q Consensus 35 ~~tg~~~tyai~G~iR~~GesD~~lnrL~ 63 (73)
.|+|...+|.||-.+...|.|++++.-|+
T Consensus 147 i~NGtv~IY~ICr~Lm~~G~s~~vle~L~ 175 (542)
T PF14858_consen 147 IYNGTVHIYTICRHLMTAGHSAKVLEYLL 175 (542)
T ss_pred eeCCeeeHHHHHHHHHHccchHHHHHHHH
Confidence 48999999999999999999999998775
Done!