Query psy16599
Match_columns 73
No_of_seqs 104 out of 175
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:02:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_V S26, YS25, 40S ribosoma 100.0 1E-49 3.5E-54 258.8 7.0 72 1-73 11-83 (87)
2 2xzm_Z RPS21E; ribosome, trans 100.0 6E-47 2.1E-51 249.7 7.2 69 1-71 26-95 (97)
3 3iz6_T 40S ribosomal protein S 100.0 9E-48 3.1E-52 247.5 -4.2 68 1-69 11-78 (82)
4 1s1d_A Apyrase; adpase, five-b 81.5 0.4 1.4E-05 36.8 0.7 33 2-34 227-273 (331)
5 3arc_O Photosystem II manganes 55.4 7.9 0.00027 28.6 2.7 28 19-46 191-218 (243)
6 3zqs_A E3 ubiquitin-protein li 42.2 16 0.00056 25.4 2.5 43 8-63 114-156 (186)
7 4frw_A Poliovirus receptor-rel 39.4 8.4 0.00029 22.9 0.6 24 6-29 191-214 (218)
8 2c1s_A Biotin binding protein 38.8 12 0.00041 24.7 1.3 23 19-43 15-37 (126)
9 4fmk_A Poliovirus receptor-rel 38.5 7.9 0.00027 23.1 0.4 21 6-26 197-217 (225)
10 2rd1_A Putative outer membrane 37.5 19 0.00064 21.4 1.9 30 7-37 1-31 (62)
11 1twf_J DNA-directed RNA polyme 35.3 17 0.00058 22.1 1.5 17 1-17 1-17 (70)
12 2zg1_A Sialic acid-binding IG- 34.7 10 0.00034 23.2 0.4 21 6-26 193-213 (214)
13 3bdu_A Putative lipoprotein; X 33.3 23 0.0008 20.9 1.9 30 7-37 1-31 (62)
14 2jgs_A Circular permutant of a 28.7 22 0.00076 23.9 1.3 34 5-42 94-127 (130)
15 4ayb_N DNA-directed RNA polyme 28.6 14 0.00048 22.3 0.3 17 1-17 1-17 (66)
16 2y32_A BLR5658 protein, bradav 27.7 35 0.0012 22.9 2.2 21 23-43 14-34 (138)
17 2xzm_N RPS29E; ribosome, trans 27.0 36 0.0012 19.5 1.9 24 47-70 28-53 (55)
18 1yya_A Triosephosphate isomera 25.7 65 0.0022 23.1 3.4 49 21-69 57-121 (250)
19 3j20_P 30S ribosomal protein S 24.6 43 0.0015 19.3 1.9 24 47-70 29-54 (56)
20 3knb_A Titin; IG-like, titin, 24.5 15 0.0005 21.0 -0.1 21 6-28 79-99 (100)
21 1m6j_A TIM, TPI, triosephospha 24.0 79 0.0027 22.7 3.6 48 22-69 67-129 (261)
22 2btm_A TIM, protein (triosepho 23.7 78 0.0027 22.7 3.6 49 21-69 57-121 (252)
23 3plx_B Aspartate 1-decarboxyla 22.9 44 0.0015 21.6 1.9 21 23-48 19-39 (102)
24 1f97_A Junction adhesion molec 22.9 30 0.001 20.6 1.0 25 6-30 185-209 (212)
25 2j27_A Triosephosphate isomera 22.4 83 0.0029 22.5 3.5 49 21-69 59-122 (250)
26 2vxn_A Triosephosphate isomera 21.9 95 0.0033 22.2 3.7 49 21-69 60-123 (251)
27 1uhe_A Aspartate 1-decarboxyla 21.7 43 0.0015 21.4 1.7 21 23-48 18-38 (97)
28 3cx2_A Myosin-binding protein 21.5 27 0.00093 19.6 0.6 20 6-27 88-107 (108)
29 3u5c_d S36, YS29, 40S ribosoma 21.4 42 0.0014 19.4 1.4 24 47-70 29-54 (56)
30 1vc3_B L-aspartate-alpha-decar 20.9 46 0.0016 21.2 1.7 21 23-48 19-39 (96)
31 2di7_A BK158_1; beta-sandwich, 20.8 24 0.00082 22.6 0.3 35 14-48 63-97 (124)
32 2dlt_A Myosin binding protein 20.5 45 0.0015 18.4 1.4 21 6-30 79-99 (106)
33 1aw2_A Triosephosphate isomera 20.5 93 0.0032 22.3 3.4 49 21-69 60-124 (256)
No 1
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=100.00 E-value=1e-49 Score=258.78 Aligned_cols=72 Identities=44% Similarity=0.732 Sum_probs=70.0
Q ss_pred CcccccccccCCccccCCcceeeeeeeeecCCCcee-ecCeeEEEEehhhhhcccchHHHHHHHHHcCccccCC
Q psy16599 1 MVSLTRSSASNRIIAAKDHASIQIAIADVDPATGRT-TDNLKMYAICGQIRRMGESDDCIGRLAKDDGIIAKNY 73 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~AkDHaSVQInva~vd~~~G~~-tg~~~tyai~G~iR~~GesD~~lnrL~~~~g~~~~~~ 73 (73)
+|||||||||||||+|||||||||||++||+ +|+| ||+++||||||+||+|||||+||||||+++|++++++
T Consensus 11 LYiPRKCSaTNriI~AKDHaSVQIni~~vd~-~G~~i~g~~~tyai~G~iR~~GesD~~l~rLa~~~g~l~~~~ 83 (87)
T 3u5c_V 11 LYVPRKCSATNRIIKADDHASVQINVAKVDE-EGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLLKNVW 83 (87)
T ss_dssp SCCCCCCTTTCCCCCTTCTTCEEEEEECCCS-SSCCCSSCEEEEEECHHHHHTTCHHHHHHHHHHTTTSCCSSC
T ss_pred EEccccccccCCceecCCcceEEEeeeeECC-cccEeCCCeeEEEEehhhhhCcchHHHHHHHHHHcCcccccc
Confidence 5999999999999999999999999999996 7999 9999999999999999999999999999999999885
No 2
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=100.00 E-value=6e-47 Score=249.73 Aligned_cols=69 Identities=28% Similarity=0.515 Sum_probs=66.9
Q ss_pred CcccccccccCCccccCCcceeeeeeeeecCCCceee-cCeeEEEEehhhhhcccchHHHHHHHHHcCcccc
Q psy16599 1 MVSLTRSSASNRIIAAKDHASIQIAIADVDPATGRTT-DNLKMYAICGQIRRMGESDDCIGRLAKDDGIIAK 71 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~AkDHaSVQInva~vd~~~G~~t-g~~~tyai~G~iR~~GesD~~lnrL~~~~g~~~~ 71 (73)
+|||||||||||||+|||||||||||++||| +|+|+ |+++|| |||+||+|||||+||||||+++|++++
T Consensus 26 LYiPRKCSaTNRiI~AKDHaSVQInIa~vd~-~G~~~~g~~~ty-icG~iR~~GesDdal~rL~~~~g~l~~ 95 (97)
T 2xzm_Z 26 AYLPRKCDWSNKLIFSNDQSSVQIAIAEVGE-NGQATGSKTNVV-LCGSVRSKGEAHIALENILRERGLYPI 95 (97)
T ss_dssp SSCCCBCTTTCCBCCSSCTTCEEEEEEEECS-SSCEEEEEEEEE-ECHHHHHTTCHHHHHHHHHHHTTCSSC
T ss_pred EeccccccccCCccccCCceeEEEEhhhcCc-cccccCCCceEE-EechhhcCcchHHHHHHHHHHcCCccc
Confidence 5999999999999999999999999999997 49999 999999 999999999999999999999999975
No 3
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9e-48 Score=247.46 Aligned_cols=68 Identities=38% Similarity=0.565 Sum_probs=65.1
Q ss_pred CcccccccccCCccccCCcceeeeeeeeecCCCceeecCeeEEEEehhhhhcccchHHHHHHHHHcCcc
Q psy16599 1 MVSLTRSSASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKDDGII 69 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~AkDHaSVQInva~vd~~~G~~tg~~~tyai~G~iR~~GesD~~lnrL~~~~g~~ 69 (73)
+|||||||||||||+|||||||||||++|| ++|+|||+++||||||+||+|||||+||||||++++.+
T Consensus 11 LYiPRKCSaTNriI~AKDHaSVQInv~~vd-~~G~~~g~~~tyai~G~iR~~GesD~~l~rL~~~~~~~ 78 (82)
T 3iz6_T 11 LYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAE 78 (82)
T ss_dssp CHHHHHHHHHHHHHHTTSSSSCCCCCEEEC-SSSCEEEECCCCSCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred EeccccccccCCccccCCceeEEEEEEEEc-CCccCCCCeeEEEEehhhhhCcchHHHHHHHHHHhhhh
Confidence 599999999999999999999999999999 69999999999999999999999999999999877643
No 4
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=81.55 E-value=0.4 Score=36.78 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=25.0
Q ss_pred cccccccc------------cCCccccC-Ccceeee-eeeeecCCCc
Q psy16599 2 VSLTRSSA------------SNRIIAAK-DHASIQI-AIADVDPATG 34 (73)
Q Consensus 2 ~iPRKCSa------------TnRiI~Ak-DHaSVQI-nva~vd~~~G 34 (73)
++|||||- +|-||.|. |..+|++ .|+.++|..|
T Consensus 227 FLPRr~S~e~Yde~~DE~~G~N~li~a~edF~~i~v~~i~~~~p~~G 273 (331)
T 1s1d_A 227 FLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHG 273 (331)
T ss_dssp ECCSEEESSCCCHHHHTTCBCCEEEEECTTSSCEEEEECSCCCTTEE
T ss_pred EeccccCcCcccchhhhhcCccEEEEecCCcceeEEEEcCCCCCccc
Confidence 58999995 78888866 7788875 4777787445
No 5
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=55.43 E-value=7.9 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=22.8
Q ss_pred cceeeeeeeeecCCCceeecCeeEEEEe
Q psy16599 19 HASIQIAIADVDPATGRTTDNLKMYAIC 46 (73)
Q Consensus 19 HaSVQInva~vd~~~G~~tg~~~tyai~ 46 (73)
..++.+.|++||++||.+-|-|..--.+
T Consensus 191 ~G~i~l~V~kvd~~TGEiaGvF~s~QpS 218 (243)
T 3arc_O 191 KGQISLNVAKVDGRTGEIAGTFESEQLS 218 (243)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred cceEEEEEEeeCCCCceEEEEEEeeCCC
Confidence 3568899999999999999988765444
No 6
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=42.21 E-value=16 Score=25.43 Aligned_cols=43 Identities=30% Similarity=0.377 Sum_probs=30.3
Q ss_pred cccCCccccCCcceeeeeeeeecCCCceeecCeeEEEEehhhhhcccchHHHHHHH
Q psy16599 8 SASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLA 63 (73)
Q Consensus 8 SaTnRiI~AkDHaSVQInva~vd~~~G~~tg~~~tyai~G~iR~~GesD~~lnrL~ 63 (73)
+.|-|-|+-.+|.||||.| ||..=++-. -+.+.|. |..++.|-
T Consensus 114 ~~~~RRIalg~~vsl~i~v---dP~~P~~lP---e~~FlG~-------~~~v~~lr 156 (186)
T 3zqs_A 114 SATARRIALGNNVSINIEV---DPRHPTMLP---ECFFLGA-------DHVVKPLG 156 (186)
T ss_dssp TCCEEEEEEETTEEEEEEC---CTTSTTSCC---EEEEEEC-------HHHHHHHH
T ss_pred cCcEEEEEECCCcEEEEEE---CCCCCCcCC---ceEEECC-------hHHHHHHH
Confidence 4577999999999999988 664434333 2677776 66666553
No 7
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=39.39 E-value=8.4 Score=22.91 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=18.6
Q ss_pred cccccCCccccCCcceeeeeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAIADV 29 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva~v 29 (73)
.|.|+|......--.+++++|++-
T Consensus 191 tC~a~N~~g~~~~~~t~~v~V~~~ 214 (218)
T 4frw_A 191 TCVVSHPGLLQDQRITHILHVSHH 214 (218)
T ss_dssp EEEEECTTCSSCEEEEEECCEECC
T ss_pred EEEEEeCCCCeEEEEEEEEEECcC
Confidence 599999887777677788888753
No 8
>2c1s_A Biotin binding protein A; HET: BSO; 1.75A {Gallus gallus} PDB: 2c1q_A*
Probab=38.81 E-value=12 Score=24.74 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=17.8
Q ss_pred cceeeeeeeeecCCCceeecCeeEE
Q psy16599 19 HASIQIAIADVDPATGRTTDNLKMY 43 (73)
Q Consensus 19 HaSVQInva~vd~~~G~~tg~~~ty 43 (73)
..| ||.|..|| .+|.++|++.|.
T Consensus 15 lGS-~mtI~~v~-~~G~itG~Y~Ta 37 (126)
T 2c1s_A 15 LGS-NMTISALD-VAGTFSGSYQTA 37 (126)
T ss_dssp TSC-EEEECCCC-TTSEEEEEEECS
T ss_pred CCC-EEEEEEeC-CCCEEEEEEECC
Confidence 344 68888899 699999988763
No 9
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=38.55 E-value=7.9 Score=23.15 Aligned_cols=21 Identities=0% Similarity=0.063 Sum_probs=15.9
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.++|.-....-.++|+++|
T Consensus 197 tC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 197 TCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp EEEEECTTCSSCEEEEEECCB
T ss_pred EEEEEcCCCCeEEEEEEEEEE
Confidence 589999877766667777765
No 10
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=37.53 E-value=19 Score=21.36 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=20.0
Q ss_pred ccccCCccccCCcceeeee-eeeecCCCceee
Q psy16599 7 SSASNRIIAAKDHASIQIA-IADVDPATGRTT 37 (73)
Q Consensus 7 CSaTnRiI~AkDHaSVQIn-va~vd~~~G~~t 37 (73)
|| ||-+|+-+|=..|+=. =.++|++||.|.
T Consensus 1 CS-S~yvitt~DG~~IvT~gKP~~D~dTGm~s 31 (62)
T 2rd1_A 1 CT-TNYVMTTKNGQTIVTQGKPQLDKETGMTS 31 (62)
T ss_dssp ---CEEEEEETTSCEEEEESCCEEETTTTEEE
T ss_pred CC-CceEEEeCCCcEEEcCCCcceeCCCCCEE
Confidence 76 7888888887777433 346888889753
No 11
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=35.28 E-value=17 Score=22.10 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=15.1
Q ss_pred CcccccccccCCccccC
Q psy16599 1 MVSLTRSSASNRIIAAK 17 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~Ak 17 (73)
|.||=.|..-+++|+.+
T Consensus 1 MiiPVRCFTCGkvi~~~ 17 (70)
T 1twf_J 1 MIVPVRCFSCGKVVGDK 17 (70)
T ss_dssp CCCCSBCTTTCCBCTTC
T ss_pred CCCCeecCCCCCChHHH
Confidence 78999999999999874
No 12
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=34.70 E-value=10 Score=23.18 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=13.2
Q ss_pred cccccCCccccCCcceeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAI 26 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInv 26 (73)
.|.++|..-.....++|+++|
T Consensus 193 ~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 193 TCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp EEEEECC----CCEEEEECCC
T ss_pred EEEEEeCCCCcceEEEEEEEe
Confidence 488888766666777888776
No 13
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=33.30 E-value=23 Score=20.91 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=20.2
Q ss_pred ccccCCccccCCcceeeee-eeeecCCCceee
Q psy16599 7 SSASNRIIAAKDHASIQIA-IADVDPATGRTT 37 (73)
Q Consensus 7 CSaTnRiI~AkDHaSVQIn-va~vd~~~G~~t 37 (73)
|| ||-+|+-+|=..|+=. =.++|++||.|.
T Consensus 1 CS-S~yvitt~DG~~IvT~gKP~~D~dTGmys 31 (62)
T 3bdu_A 1 MS-SNYVLHTNDGRTIVAEGKPKVDDETGMIS 31 (62)
T ss_dssp -C-CEEEEEETTSCEEEEESCCEECTTTSSEE
T ss_pred CC-CceEEEECCCcEEEcCCCcceeCCCCCEE
Confidence 76 7888888887776332 346888888753
No 14
>2jgs_A Circular permutant of avidin; biotin-binding protein, glycoprotein; HET: BTN; 1.9A {Gallus gallus}
Probab=28.71 E-value=22 Score=23.94 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=21.6
Q ss_pred ccccccCCccccCCcceeeeeeeeecCCCceeecCeeE
Q psy16599 5 TRSSASNRIIAAKDHASIQIAIADVDPATGRTTDNLKM 42 (73)
Q Consensus 5 RKCSaTnRiI~AkDHaSVQInva~vd~~~G~~tg~~~t 42 (73)
|||+.+.+-.. |-.| +|.|..|| .+|.|+|.+.|
T Consensus 94 ~~c~l~G~W~n--~lgs-~m~i~~v~-~~G~f~G~y~t 127 (130)
T 2jgs_A 94 RKCSLTGKWTN--DLGS-NMTIGAVN-SRGEFTGTYIT 127 (130)
T ss_dssp --CCSCEEEEC--TTCC-EEEECCCC-SSCEEEEEEEC
T ss_pred cccccceEEeh--hcCC-eEEEEEec-cCcEEEEEEEc
Confidence 67765444332 2233 68899999 69999997764
No 15
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=28.62 E-value=14 Score=22.26 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.9
Q ss_pred CcccccccccCCccccC
Q psy16599 1 MVSLTRSSASNRIIAAK 17 (73)
Q Consensus 1 ~~iPRKCSaTnRiI~Ak 17 (73)
|.||=+|-.-+++|+.|
T Consensus 1 MiIPVRCFTCGkvi~~k 17 (66)
T 4ayb_N 1 MMIPIRCFTCGSLIADK 17 (66)
T ss_dssp CCCCSBCTTTCCBCHHH
T ss_pred CCCCcccCCCcHhHHHH
Confidence 78999999999999765
No 16
>2y32_A BLR5658 protein, bradavidin; biotin-binding protein; 1.78A {Bradyrhizobium japonicum}
Probab=27.71 E-value=35 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.2
Q ss_pred eeeeeeecCCCceeecCeeEE
Q psy16599 23 QIAIADVDPATGRTTDNLKMY 43 (73)
Q Consensus 23 QInva~vd~~~G~~tg~~~ty 43 (73)
||.|.-||..+|.++|.+.|.
T Consensus 14 ~mtI~av~~~~G~itGtY~Ta 34 (138)
T 2y32_A 14 TLAITSFNSNTGAITGTYTNN 34 (138)
T ss_dssp EEEEEEECTTTCEEEEEEECC
T ss_pred EEEEEEccCCCCEEEEEEecc
Confidence 577888896689999988775
No 17
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=27.03 E-value=36 Score=19.49 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred hhhhhcc--cchHHHHHHHHHcCccc
Q psy16599 47 GQIRRMG--ESDDCIGRLAKDDGIIA 70 (73)
Q Consensus 47 G~iR~~G--esD~~lnrL~~~~g~~~ 70 (73)
|.||.-| -+--++-++|.+-|+.+
T Consensus 28 g~iRkfgl~lcR~cFRe~A~~~Gf~K 53 (55)
T 2xzm_N 28 GLITKYEMMTCRRCFREQAPHIGFVK 53 (55)
T ss_dssp TTCCCSSSCCCHHHHHHHHHHHTCBC
T ss_pred chHHHhCCchhhHHHHHHHHHhCcee
Confidence 5789999 99999999999999865
No 18
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=25.66 E-value=65 Score=23.06 Aligned_cols=49 Identities=33% Similarity=0.508 Sum_probs=33.9
Q ss_pred eeeeeeeeecCC-CceeecCe---------eEEEEehhh-hh--cccchHHHHHHH---HHcCcc
Q psy16599 21 SIQIAIADVDPA-TGRTTDNL---------KMYAICGQI-RR--MGESDDCIGRLA---KDDGII 69 (73)
Q Consensus 21 SVQInva~vd~~-~G~~tg~~---------~tyai~G~i-R~--~GesD~~lnrL~---~~~g~~ 69 (73)
.|++---+++++ .|.|||+. -.|.|-|-= || .||+|+-+++-+ .+.||.
T Consensus 57 ~i~vgAQn~~~~~~GA~TGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~ 121 (250)
T 1yya_A 57 QVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGIT 121 (250)
T ss_dssp SCEEEESCCCSSSSBSCTTCCCHHHHHHTTCSEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCE
T ss_pred CCeEEeccCCCCCCCCccCcCCHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCE
Confidence 466655667753 49999997 467777754 33 499999888743 566664
No 19
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.58 E-value=43 Score=19.30 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred hhhhhccc--chHHHHHHHHHcCccc
Q psy16599 47 GQIRRMGE--SDDCIGRLAKDDGIIA 70 (73)
Q Consensus 47 G~iR~~Ge--sD~~lnrL~~~~g~~~ 70 (73)
|.||.-|- +-.++-++|.+-|+.+
T Consensus 29 g~iRkfGL~~cR~cfRe~A~~iGF~K 54 (56)
T 3j20_P 29 PIIRIQGLMLCRHCFREVAPKLGFRK 54 (56)
T ss_dssp SCCCTTTCCCCHHHHHHHHHHHTCCS
T ss_pred ccccccCChHHHHHHHHHHHhcCcEe
Confidence 68999999 9999999999999875
No 20
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=24.47 E-value=15 Score=21.02 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=12.3
Q ss_pred cccccCCccccCCcceeeeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAIAD 28 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva~ 28 (73)
.|.++|.. ..+.+++++.|-.
T Consensus 79 ~C~a~N~~--G~~~~~~~l~V~~ 99 (100)
T 3knb_A 79 TLSLGNEF--GSDSATVNIHIRS 99 (100)
T ss_dssp EEEEEETT--EEEEEEEEEEEEC
T ss_pred EEEEEECC--CEEEEEEEEEEEE
Confidence 47777753 3455666666643
No 21
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=23.96 E-value=79 Score=22.70 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=33.7
Q ss_pred eeeeeeeecCCCceeecCee---------EEEEehhh-hh--cccchHHHHHH---HHHcCcc
Q psy16599 22 IQIAIADVDPATGRTTDNLK---------MYAICGQI-RR--MGESDDCIGRL---AKDDGII 69 (73)
Q Consensus 22 VQInva~vd~~~G~~tg~~~---------tyai~G~i-R~--~GesD~~lnrL---~~~~g~~ 69 (73)
|++---+++.+.|.|||+.. .|.|-|-= || .||+|+-+++- |.+.||.
T Consensus 67 i~vgAQn~~~~~GAfTGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~ 129 (261)
T 1m6j_A 67 ILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLK 129 (261)
T ss_dssp EEEEESCCBSSSBSCTTCCBHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCE
T ss_pred eEEEeccCCCCCCCccccCCHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCE
Confidence 66666667645699999974 57766654 33 49999988874 3566664
No 22
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=23.73 E-value=78 Score=22.71 Aligned_cols=49 Identities=29% Similarity=0.492 Sum_probs=33.3
Q ss_pred eeeeeeeeecCC-CceeecCe---------eEEEEehhh-hh--cccchHHHHHH---HHHcCcc
Q psy16599 21 SIQIAIADVDPA-TGRTTDNL---------KMYAICGQI-RR--MGESDDCIGRL---AKDDGII 69 (73)
Q Consensus 21 SVQInva~vd~~-~G~~tg~~---------~tyai~G~i-R~--~GesD~~lnrL---~~~~g~~ 69 (73)
.|++---+++++ .|.|||+. -.|.|-|-= || .||+|+.+++= |.+.||.
T Consensus 57 ~i~vgAQn~~~~~~GA~TGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~ 121 (252)
T 2btm_A 57 DLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121 (252)
T ss_dssp SEEEEESCCCSSSSBSCTTCCCHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCE
T ss_pred CceEEeccCCCCCCCCcCCcCCHHHHHHcCCCEEEeCchhcccccCCCHHHHHHHHHHHHHCCCE
Confidence 466666677754 49999997 457766654 33 49999998763 3556664
No 23
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=22.91 E-value=44 Score=21.56 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=14.8
Q ss_pred eeeeeeecCCCceeecCeeEEEEehh
Q psy16599 23 QIAIADVDPATGRTTDNLKMYAICGQ 48 (73)
Q Consensus 23 QInva~vd~~~G~~tg~~~tyai~G~ 48 (73)
|+.|..++ ||. .+.||+|.|.
T Consensus 19 ~V~I~Nvn--NG~---Rf~TYvI~Ge 39 (102)
T 3plx_B 19 KVQVVNVN--NGA---RFETYTIATQ 39 (102)
T ss_dssp EEEEEETT--TCC---EEEEECEEES
T ss_pred EEEEEECC--CCc---EEEEEEEEcC
Confidence 45556666 563 4789999997
No 24
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=22.85 E-value=30 Score=20.60 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=16.4
Q ss_pred cccccCCccccCCcceeeeeeeeec
Q psy16599 6 RSSASNRIIAAKDHASIQIAIADVD 30 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva~vd 30 (73)
.|.++|..=.+.--+++++.|-+++
T Consensus 185 ~C~a~n~~g~~~~s~~~~l~V~~~~ 209 (212)
T 1f97_A 185 YCQAQNGYGTAMRSEAAHMDAVELN 209 (212)
T ss_dssp EEEEECSSSCCEECCCEEEEEESSC
T ss_pred EEEEccccCCccccceEEEEEEEee
Confidence 5888888644423556777776665
No 25
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=22.36 E-value=83 Score=22.49 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=33.8
Q ss_pred eeeeeeeeecCCCceeecCee---------EEEEehhh-hh--cccchHHHHHHH---HHcCcc
Q psy16599 21 SIQIAIADVDPATGRTTDNLK---------MYAICGQI-RR--MGESDDCIGRLA---KDDGII 69 (73)
Q Consensus 21 SVQInva~vd~~~G~~tg~~~---------tyai~G~i-R~--~GesD~~lnrL~---~~~g~~ 69 (73)
.|++---+++.+.|.|||+.. .|.|-|-= || .||+|+-+++-+ .+.||.
T Consensus 59 ~i~vgAQn~~~~~GA~TGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~ 122 (250)
T 2j27_A 59 KFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFM 122 (250)
T ss_dssp TEEEEESCCBSSCBSCTTCCBHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCE
T ss_pred CceEeecccCCCCCCcccccCHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCE
Confidence 466666667755699999974 56766654 33 499999888743 556664
No 26
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=21.87 E-value=95 Score=22.20 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=34.2
Q ss_pred eeeeeeeeecCCCceeecCee---------EEEEehhh-hh--cccchHHHHHH---HHHcCcc
Q psy16599 21 SIQIAIADVDPATGRTTDNLK---------MYAICGQI-RR--MGESDDCIGRL---AKDDGII 69 (73)
Q Consensus 21 SVQInva~vd~~~G~~tg~~~---------tyai~G~i-R~--~GesD~~lnrL---~~~~g~~ 69 (73)
.|++---+++.+.|.|||+.. .|.|-|-= || .||+|+-+++- |.+.||.
T Consensus 60 ~i~vgAQn~~~~~GA~TGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~ 123 (251)
T 2vxn_A 60 KYVISAQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFM 123 (251)
T ss_dssp TEEEEESCCBSSCSSCTTCCBHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCE
T ss_pred CceEeecccCCCCCCCcCcCCHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCE
Confidence 466666667755699999974 57766654 33 49999988874 3566664
No 27
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=21.69 E-value=43 Score=21.41 Aligned_cols=21 Identities=33% Similarity=0.743 Sum_probs=14.4
Q ss_pred eeeeeeecCCCceeecCeeEEEEehh
Q psy16599 23 QIAIADVDPATGRTTDNLKMYAICGQ 48 (73)
Q Consensus 23 QInva~vd~~~G~~tg~~~tyai~G~ 48 (73)
|+.|..++ ||. .|.||+|.|.
T Consensus 18 ~V~IvNvn--NG~---RfeTYvI~Ge 38 (97)
T 1uhe_A 18 KVEIVDVN--NGE---RFSTYVILGK 38 (97)
T ss_dssp EEEEEETT--TCC---EEEEECEEEC
T ss_pred EEEEEECC--CCc---eEEEEEEeec
Confidence 45556666 563 4789999886
No 28
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=21.48 E-value=27 Score=19.62 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=13.0
Q ss_pred cccccCCccccCCcceeeeeee
Q psy16599 6 RSSASNRIIAAKDHASIQIAIA 27 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva 27 (73)
.|.++|.. ..+.++++++|.
T Consensus 88 ~C~a~N~~--G~~~~~~~L~V~ 107 (108)
T 3cx2_A 88 RCEVSTKD--KFDCSNFNLTVH 107 (108)
T ss_dssp EEEEECSS--CEEEEEEEEEEE
T ss_pred EEEEecCC--CceEEEEEEEEe
Confidence 47777764 456677777664
No 29
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=21.40 E-value=42 Score=19.35 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.3
Q ss_pred hhhhhcc--cchHHHHHHHHHcCccc
Q psy16599 47 GQIRRMG--ESDDCIGRLAKDDGIIA 70 (73)
Q Consensus 47 G~iR~~G--esD~~lnrL~~~~g~~~ 70 (73)
|.||.-| -+-.++-++|.+-|+.+
T Consensus 29 g~iRkfGl~lcR~cfRe~A~~iGF~K 54 (56)
T 3u5c_d 29 GLIRKYGLNICRQCFREKANDIGFNK 54 (56)
T ss_dssp SEECGGGCCEEHHHHHHHHHHHTCBC
T ss_pred ccccccCcchhHHHHHHHHHhcCcee
Confidence 6888989 89999999999999875
No 30
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=20.92 E-value=46 Score=21.25 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=14.4
Q ss_pred eeeeeeecCCCceeecCeeEEEEehh
Q psy16599 23 QIAIADVDPATGRTTDNLKMYAICGQ 48 (73)
Q Consensus 23 QInva~vd~~~G~~tg~~~tyai~G~ 48 (73)
|+.|..++ ||. .|.||+|.|.
T Consensus 19 ~V~IvNvn--NG~---Rf~TYvI~Ge 39 (96)
T 1vc3_B 19 QVDIYDIT--NGA---RLTTYALPGE 39 (96)
T ss_dssp EEEEEETT--TCC---EEEEECEEEC
T ss_pred EEEEEECC--CCc---eEEEEEEEcc
Confidence 45556666 563 4789999885
No 31
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.84 E-value=24 Score=22.65 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=26.1
Q ss_pred cccCCcceeeeeeeeecCCCceeecCeeEEEEehh
Q psy16599 14 IAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQ 48 (73)
Q Consensus 14 I~AkDHaSVQInva~vd~~~G~~tg~~~tyai~G~ 48 (73)
|..+|....+|-+..+|-.+|.|.-.++++.-+|.
T Consensus 63 I~~~~~~~~~i~~~v~Dn~DGsy~v~Yr~~~~~g~ 97 (124)
T 2di7_A 63 VSAPEEQFTRVGVQVLDRKDGSFIVRYRMYASYKN 97 (124)
T ss_dssp EECSSCCCCCCCCEEECCSSSCCEEECCCCSCCSC
T ss_pred EecCCCCceEeeeEEEECCCCeEEEEEECCCCCCC
Confidence 45566666778888899888999888877666554
No 32
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.50 E-value=45 Score=18.44 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=9.8
Q ss_pred cccccCCccccCCcceeeeeeeeec
Q psy16599 6 RSSASNRIIAAKDHASIQIAIADVD 30 (73)
Q Consensus 6 KCSaTnRiI~AkDHaSVQInva~vd 30 (73)
.|.++|. ...+++++.|-++.
T Consensus 79 ~C~a~n~----~~~~~~~l~V~~~~ 99 (106)
T 2dlt_A 79 TFVPDGY----ALSLSAKLNFLEIK 99 (106)
T ss_dssp EEEEETS----CCCCCBCEEEECCC
T ss_pred EEEEccC----CceEEEEEEEEEEe
Confidence 3555554 33344455444443
No 33
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=20.46 E-value=93 Score=22.32 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=32.9
Q ss_pred eeeeeeeeecCC-CceeecCee---------EEEEehhh-hh--cccchHHHHHH---HHHcCcc
Q psy16599 21 SIQIAIADVDPA-TGRTTDNLK---------MYAICGQI-RR--MGESDDCIGRL---AKDDGII 69 (73)
Q Consensus 21 SVQInva~vd~~-~G~~tg~~~---------tyai~G~i-R~--~GesD~~lnrL---~~~~g~~ 69 (73)
.|++---+++++ .|.|||+.. .|.|-|-= || .||+|+.+++= |.+.||.
T Consensus 60 ~i~vgAQn~~~~~~GA~TGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~ 124 (256)
T 1aw2_A 60 AIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLT 124 (256)
T ss_dssp CCEEEESCCCSCSSBSCTTCCCHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCE
T ss_pred CceEEeccCCCCCCCCccCccCHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCE
Confidence 366655667753 499999974 57766654 33 39999998763 3556664
Done!