RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16599
(73 letters)
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_T 3u5g_V
Length = 87
Score = 97.6 bits (243), Expect = 5e-29
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 6 RSSASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKD 65
+ SA+NRII A DHAS+QI +A VD YA+ G +R GESDD + RLA++
Sbjct: 16 KCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQN 75
Query: 66 DGIIAKNY 73
DG++ +
Sbjct: 76 DGLLKNVW 83
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_Z
Length = 97
Score = 91.5 bits (227), Expect = 2e-26
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 8 SASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKDDG 67
SN++I + D +S+QIAIA+V G+ T + +CG +R GE+ + + ++ G
Sbjct: 33 DWSNKLIFSNDQSSVQIAIAEVGE-NGQATGSKTNVVLCGSVRSKGEAHIALENILRERG 91
Query: 68 IIAK 71
+
Sbjct: 92 LYPI 95
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 82
Score = 89.9 bits (223), Expect = 4e-26
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 6 RSSASNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKD 65
+ SA+NRII AKDHAS+QI I VD G +A+ G IR G++D + RL +
Sbjct: 16 KCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFIRAQGDADSALDRLWQK 74
Query: 66 DGIIAK 71
K
Sbjct: 75 RKAEVK 80
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 28.1 bits (62), Expect = 0.18
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 10 SNRIIAAKDHASIQIAIADVDPATGRTTDNLKMYAICGQIRRMGESDDCIGRLAKDDGI 68
++ + ++Q + + A G T D + A G + + + L + G+
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGL 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.19
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 5 TRSSASNRIIAAKDHASIQIAIADVDPATGR-----TTDNLKMYAIC-GQIRRMGESDDC 58
T + +I A I + N ++ AI GQ G +DD
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----GNTDDY 169
Query: 59 IGRLAK 64
L
Sbjct: 170 FEELRD 175
Score = 26.6 bits (58), Expect = 0.65
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 1 MVSLTRSSASNRIIAAKDHASIQIAIADVDPATGRTT----DNL--KMYAICGQIRRMGE 54
M+++ R+ A+ ++Q + V TG N+ + Y G +R +
Sbjct: 1809 MIAINPG----RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-- 1862
Query: 55 SDDCIGRLAKDDGI 68
D + + +
Sbjct: 1863 --DTVTNVLNFIKL 1874
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond,
electron transport, endopl reticulum, FAD, flavoprotein,
glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae}
PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Length = 388
Score = 25.8 bits (56), Expect = 1.4
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 19 HASIQIAIAD--VDPATGRTTDNLKMYAICGQIRRMGESDD 57
HASI ++ ++ TG+ NL ++ + R+G D
Sbjct: 192 HASIGTHLSKEYLNTKTGKWEPNLDLF-----MARIGNFPD 227
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 25.6 bits (55), Expect = 1.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 8 SASNRIIAAKDHASIQIAIAD 28
R+ KD +++ IAD
Sbjct: 218 KHKTRLFPLKDRVYLKLTIAD 238
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A
{Pyrococcus horikoshii} SCOP: c.72.1.3
Length = 457
Score = 24.3 bits (52), Expect = 4.4
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 6 RSSASNRIIAAKDHASIQIAIAD 28
+ NR I A D + + + +
Sbjct: 194 EAPRENRFIGAADDYNPILYVRE 216
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC
AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Length = 455
Score = 24.3 bits (52), Expect = 4.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 6 RSSASNRIIAAKDHASIQIAIAD 28
+ NR I + D + + I +
Sbjct: 191 EAPRENRFIGSADDYNTTLFIRE 213
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting,
transferase; HET: ADP; 2.30A {Thermococcus litoralis}
SCOP: c.72.1.3
Length = 467
Score = 23.9 bits (51), Expect = 6.0
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 6 RSSASNRIIAAKDHASIQIAIAD 28
++ NR IA D + ++ +
Sbjct: 199 QAPRENRFIANADDYNARVYMRR 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.370
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,089,741
Number of extensions: 53488
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 22
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)