RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16601
(177 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 46.4 bits (111), Expect = 8e-08
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPK-FKCPHCNKKCHQKCNLKSHIALKH 102
GE + C C + + T+ H+ + + F CPHC+ +K +L H+ +H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 39.0 bits (92), Expect = 5e-05
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 45/114 (39%)
Query: 64 TLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGS 123
+ + R G++P ++C C+ + Q +K HI KH + +A
Sbjct: 2 SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAK--------------- 45
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
F CP+CD K +L H+ +H+
Sbjct: 46 -----------------------------FHCPHCDTVIARKSDLGVHLRKQHS 70
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 44.3 bits (105), Expect = 5e-07
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLR---YECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
G C C T ++ +LN H R F C C K+ + ++ +H + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 103 DQLLAP 108
LL
Sbjct: 63 PALLLA 68
Score = 38.2 bits (89), Expect = 1e-04
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 124 FICPKCSNRYVYKHNLKQHLK---FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
C C K +L H + F C +C KR + ++ +H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63
Score = 37.8 bits (88), Expect = 2e-04
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 19/73 (26%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNG--SFICPKCSN 131
G +C C C QK +L H R++++ F C C
Sbjct: 4 GSSG-LQCEICGFTCRQKASLNWHQ----------------RKHAETVAALRFPCEFCGK 46
Query: 132 RYVYKHNLKQHLK 144
R+ ++ H
Sbjct: 47 RFEKPDSVAAHRS 59
Score = 27.0 bits (60), Expect = 1.3
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 43 KPAGEDVFACPKCSKTYLRQYTLNAHLR 70
+ F C C K + + ++ AH
Sbjct: 32 ETVAALRFPCEFCGKRFEKPDSVAAHRS 59
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYEC--GKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
GE + C CS+ Y H + + CP C K+ +K N+ +H+ + H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 31.8 bits (73), Expect = 0.016
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 29 NLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLR 70
N + T+ K + CP C K + R+ + AH++
Sbjct: 25 NFCRHYVTSHKRNVKV-----YPCPFCFKEFTRKDNMTAHVK 61
Score = 30.6 bits (70), Expect = 0.045
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFEC--GVEPQFKCPYCDKRCKLKGNLMSHIALKH 176
+ C CS Y + N +H V+ + CP+C K K N+ +H+ + H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIH 64
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 41.7 bits (99), Expect = 4e-06
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
C +CS + + L H R C RP FKC +C+ Q NL H+ K
Sbjct: 6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-KF 60
Score = 37.9 bits (89), Expect = 1e-04
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
C +CS K L+ H + C P FKC YC K NL H+ K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-KFH 61
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 42.5 bits (101), Expect = 7e-06
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 22/135 (16%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL 105
G CP C K +L +Y L H R G++P F+CP C K +K NL H
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEH-------- 54
Query: 106 LAPLAPRSYRRNSQLNGS---FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRC 162
+ +N S F C C + + L+ H+ G P +KC C ++
Sbjct: 55 ---------EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQF 104
Query: 163 KLKGNLMSHIALKHT 177
K +L SH+ H+
Sbjct: 105 MQKKDLQSHMIKLHS 119
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 38.6 bits (91), Expect = 8e-05
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
G+ F C C + + R L H+R G++P F C C +K + K H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 81
Score = 34.0 bits (79), Expect = 0.004
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 50 FACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
+ACP C + + + +L H+R G++P F+C C + + +L +HI
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
Score = 24.7 bits (55), Expect = 7.8
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSH 171
F C C + +L H++ G +P F C C ++ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 81
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 36.7 bits (86), Expect = 5e-04
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
G AC C K + Y LN H G++P + CP C + +K + H
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYH 54
Score = 32.1 bits (74), Expect = 0.019
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPK-FKCPHCNKKCHQKCNLKSHI 98
GE ++CP C + R+ ++ H+R G K + C C K + +L HI
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.1 bits (85), Expect = 5e-04
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 112 RSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFE---CGVEPQFKCPYCDKRCKLKGNL 168
++N ++ G + C C+ + + H+ E + + C C+ K L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 169 MSHIALKHT 177
H H
Sbjct: 67 SEHNLKYHP 75
Score = 29.4 bits (65), Expect = 0.22
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 47 EDVFACPKCSKTYLRQYTLNAHLRYE---CGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
E + C C+ H+ E + C CN + L H H
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 37.2 bits (85), Expect = 7e-04
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 84 CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHL 143
+K + +K+ I + QLL + S+ F+CP C + +LKQH+
Sbjct: 37 PEQKRLIRAIVKTLI--HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94
Query: 144 KFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
++ E CP C K + + H+ KH
Sbjct: 95 RYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 35.3 bits (80), Expect = 0.003
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
F CP C + +L H+RY CP C K+ + H+ KH
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 35.5 bits (83), Expect = 0.001
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
F C C + + R L H+R G++P F C C +K + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 50
Score = 31.7 bits (73), Expect = 0.024
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIA 99
GE FAC C + + R H + + + +L++ +A
Sbjct: 28 GEKPFACDICGRKFARSDERKRHRDIQHIL--PILEDKVEELLSKNYHLENEVA 79
Score = 24.8 bits (55), Expect = 7.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 79 FKCPHCNKKCHQKCNLKSHI 98
F+C C + + +L +HI
Sbjct: 4 FQCRICMRNFSRSDHLTTHI 23
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 34.7 bits (79), Expect = 0.001
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIA 99
C +C + L H+R RP + C +CN K NL H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (70), Expect = 0.021
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIA 173
+IC +C R LK+H++ V P + C YC+ K KGNL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMK 50
Score = 23.9 bits (51), Expect = 9.2
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKH 137
K+ C C + + LK HI R + C C+ + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHI-----------------RTHTDVRPYHCTYCNFSFKTKG 43
Query: 138 NLKQHLKFECG 148
NL +H+K +
Sbjct: 44 NLTKHMKSKAH 54
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 35.7 bits (83), Expect = 0.003
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPK--------FKCPHCNKKCHQKCNLKSH 97
+ C +T+ + L H+ E P+ +CP K K L +H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 98 I 98
I
Sbjct: 82 I 82
Score = 34.2 bits (79), Expect = 0.009
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSH 97
CP+ K++ +Y L H+R G++P F CP C K + NLK H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIH 111
Score = 30.3 bits (69), Expect = 0.18
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSH 97
GE F C P C K + R L H R G++P FKC C+++ + K H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKH 141
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 0.003
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 50 FACPKCSKTYLRQYT-LNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAP 108
CP C+ + L H+ + KC HC K+ K L H +H +
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84
Score = 34.5 bits (78), Expect = 0.004
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 114 YRRNSQLNGSFICPKCSN-RYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHI 172
++R G +CP C+ LK+H++ ++ KC +C K+ K K L H
Sbjct: 15 WQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Query: 173 ALKHT 177
+H+
Sbjct: 75 MAEHS 79
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 33.9 bits (78), Expect = 0.004
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 34 KRTASSSEDKPAGEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCH 89
+S + + C P C KTY + L AH R G++P F C C ++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFA 60
Query: 90 QKCNLKSH 97
+ L H
Sbjct: 61 RSDELSRH 68
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 34.8 bits (81), Expect = 0.004
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
GE + C C + + R L H R G +P F+C C +K + +LK+H
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHT 86
Score = 32.9 bits (76), Expect = 0.018
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCHQKCNLKSH 97
G F C C + + R L H R G++P F C P C KK + L H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRH 115
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 34.9 bits (81), Expect = 0.005
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 24/122 (19%)
Query: 79 FKCPHCNKKCHQKCNLKSHIALKH----------DQLLAPLAPRSYRRNSQLNG------ 122
+ C+++ + L HI +H R ++ L
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 123 ---SFICP--KCSNRYVYKHNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHIALK 175
C C Y NLK HL+ G +P + C + C K + H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 176 HT 177
H+
Sbjct: 123 HS 124
Score = 34.1 bits (79), Expect = 0.009
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHI 98
C + + + QY L H+R G++P KC C K + NLK+H+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHL 89
Score = 32.6 bits (75), Expect = 0.029
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 46 GEDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHIALK 101
GE C C K+Y R L HLR G++P + C H C+K + H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 102 H 102
H
Sbjct: 123 H 123
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 33.4 bits (77), Expect = 0.005
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 46 GEDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
+ACP C + + R L H+R G++P F+C C + + +L +HI
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
Score = 25.0 bits (55), Expect = 5.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 124 FICP--KCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHI 172
+ CP C R+ L +H++ G +P F+C C + +L +HI
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 33.7 bits (78), Expect = 0.005
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCHQKCNLKSH 97
C KTY + L AHLR G++P + C C K + L H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRH 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 33.2 bits (77), Expect = 0.005
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
F C C++ + RQ L H R ++P + C CN+ ++ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRH 49
Score = 24.4 bits (54), Expect = 7.0
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
F+C C+ + + +LK+H + +P + C C++ + L+ H H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHS 55
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.1 bits (77), Expect = 0.005
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 112 RSYRRNSQLNGSFICPKCSN-RYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMS 170
+ GS CP C LK+H++ C E F C +C K+ + +
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKY 80
Query: 171 HIALKHT 177
H+ H
Sbjct: 81 HVMANHN 87
Score = 31.4 bits (70), Expect = 0.047
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL 105
+CP C R+ E K+ F C HC K+ +K H+ H+ L
Sbjct: 35 VSCPTCQ-AVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 24.8 bits (53), Expect = 9.5
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFK 80
+++F C C K + H+ P
Sbjct: 59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 33.8 bits (78), Expect = 0.006
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
GE + C C + R L H R G +P F+C CN+ + +L H+
Sbjct: 42 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
Score = 32.6 bits (75), Expect = 0.017
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 38 SSSEDKPAGEDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCHQKCN 93
SS + C C+K Y + L AHLR G++P +KC C+ + +
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDE 62
Query: 94 LKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLK 144
L H KH + F C C+ + +L H+K
Sbjct: 63 LTRHYR-KH---------TGAKP-------FQCGVCNRSFSRSDHLALHMK 96
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 33.3 bits (77), Expect = 0.008
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRY---ECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE +AC C KT+ ++ L+ H + F C C K ++ + H
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 27.9 bits (63), Expect = 0.62
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 29 NLITNKR--TASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNK 86
L + + + F C KC KT+ R+ T+ H G + +
Sbjct: 30 LLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENSGP 83
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 32.8 bits (76), Expect = 0.008
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE + C +C K + R L H R G++P +KC C K Q L +H
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.4 bits (75), Expect = 0.014
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
F C C K++ R TL+ HL RP + C +C K+ HQK ++K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH 48
Score = 29.7 bits (68), Expect = 0.11
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ C C K + ++ + H G++P KC C K Q NL +H
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH 76
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 32.1 bits (74), Expect = 0.016
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYE-CGKRPKFKCPH--CNKKCHQKCNLKSH 97
G C P C + + + LN H +Y+ ++ F CP C K + K +LK H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEH 59
Score = 27.5 bits (62), Expect = 0.75
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 46 GEDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNK 86
+ F+CP C K++ + L H++ R + C
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSGP 76
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.0 bits (74), Expect = 0.017
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ + C +C ++ + L +H G++P ++C C + ++ NLK+H
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH 64
Score = 24.7 bits (55), Expect = 6.8
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 65 LNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ H +P +KC C K NL SH
Sbjct: 5 HHHHSHMTHSDKP-YKCDRCQASFRYKGNLASH 36
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 32.4 bits (75), Expect = 0.018
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
C C K + R+ L H+R G +P +KC C+ +L H
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH 55
Score = 32.0 bits (74), Expect = 0.024
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
G + C C +LN HLR +RP FKC C L H
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVH 83
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 33.2 bits (77), Expect = 0.022
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE + CP+C K++ + L H R G++P +KCP C K Q+ NL++H
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 32.8 bits (76), Expect = 0.028
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE +ACP+C K++ R L H R G++P +KCP C K K +L H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 31.6 bits (73), Expect = 0.072
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE +ACP+C K++ + L AH R G++P +KCP C K ++ NL +H
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 31.3 bits (72), Expect = 0.093
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE + CP+C K++ ++ L AH R G++P + CP C K Q +L++H
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124
Score = 31.3 bits (72), Expect = 0.11
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
GE + CP+C K++ R+ L+ H R G++P +KCP C K ++ L H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.022
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 91 KCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLK 144
K L++ AL H ++ Y + + P ++Y Y H + HLK
Sbjct: 436 KVKLENEYAL-HRSIVD-----HYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLK 482
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 32.0 bits (74), Expect = 0.026
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ F C C + + + Y L H R +RP + C C+K ++ +L+ H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDH 64
Score = 32.0 bits (74), Expect = 0.032
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
E + C C K + RQ L H ++P FKC C K Q L H
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVH 92
Score = 25.1 bits (56), Expect = 8.3
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 64 TLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ K+ F C C + + NL H
Sbjct: 4 GSSGGRLPSKTKKE-FICKFCGRHFTKSYNLLIH 36
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 32.1 bits (74), Expect = 0.036
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSH 97
G V C +C K ++ L H G++P F+C C K+ NL++H
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83
Score = 31.3 bits (72), Expect = 0.065
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 46 GEDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHI 98
GE F C C K + + L H+R G RP + CP CNKK Q NLKSHI
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHI 114
Score = 30.9 bits (71), Expect = 0.087
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 41 EDKPAGEDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
E + ACP C+K + + HL G R C C K + LK H
Sbjct: 2 EPRT-----IACPHKGCTKMFRDNSAMRKHLHTH-GPRV-HVCAECGKAFVESSKLKRH 53
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 30.9 bits (71), Expect = 0.080
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
G+ ++ C +C K++ + + H+ G RP + C C KK K +L H
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGH 56
Score = 30.5 bits (70), Expect = 0.11
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
G + C C K + ++ L H++ G +P ++C C K+ + + H+
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 29.9 bits (68), Expect = 0.12
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSH 97
C K + + L H + P ++CPH C+K+ LK H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 52
Score = 25.3 bits (56), Expect = 4.9
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
+ + C C K + L H + G K C+ H+A H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 29.9 bits (67), Expect = 0.12
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
CP L + L AHL+++C KR KC C +SH
Sbjct: 19 CPNRCPMKLSRRDLPAHLQHDCPKRRL-KCEFCGCDF-SGEAYESHE 63
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.3 bits (67), Expect = 0.16
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ C +C K++ L+ H R G++P +KC C K Q+ +L H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.9 bits (66), Expect = 0.16
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 21/104 (20%)
Query: 39 SSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
S ++V+ C C+ +H R R CP+C+ + + H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEH- 61
Query: 99 ALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQH 142
+ C +C + ++ +H
Sbjct: 62 -----------------ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 29.5 bits (65), Expect = 0.24
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%)
Query: 79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHN 138
++C CN K SH L + + +CP CS R+
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRN-------------------AAVCPYCSLRFFSPEL 57
Query: 139 LKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
++H + +C + + C C + K ++ H H
Sbjct: 58 KQEH-ESKCEYK-KLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 27.6 bits (60), Expect = 1.2
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ 104
+ CP CS + H K K C C + ++ H H+Q
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEHESKCEYK--KLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 26.8 bits (58), Expect = 2.2
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 111 PRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMS 170
S + + C C+ + H + CPYC R
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQE 60
Query: 171 H 171
H
Sbjct: 61 H 61
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 30.1 bits (67), Expect = 0.19
Identities = 15/99 (15%), Positives = 21/99 (21%), Gaps = 13/99 (13%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL 105
G F C CS Y L H+ R N K +
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME--- 72
Query: 106 LAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLK 144
C C + + +L H+
Sbjct: 73 ----------GKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 29.3 bits (65), Expect = 0.27
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 14/113 (12%)
Query: 61 RQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQL 120
+ + G F+C C+ L H+ N +
Sbjct: 3 SGSSGKLYGSIFTGASK-FRCKDCSAAYDTLVELTVHMNETG---------HYRDDNHET 52
Query: 121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIA 173
+ + R K +L + E + KC YC + +L H+
Sbjct: 53 DNNNPKRWSKPR---KRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMI 101
Score = 25.5 bits (55), Expect = 5.7
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 32 TNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLR 70
KR+ E K + V C C ++ L+ H+
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.33
Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 4/110 (3%)
Query: 17 ITNKRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKR 76
+T T ++ L + + S +
Sbjct: 120 VTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTA-SSG 178
Query: 77 PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFIC 126
++C C+ +L +H+A L S + FI
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLT--SSEIQRHIT-EFIS 225
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 27.1 bits (61), Expect = 0.44
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSHI 98
G++P + C C + LKSH+
Sbjct: 8 GEKP-YPCEICGTRFRHLQTLKSHL 31
Score = 24.0 bits (53), Expect = 5.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRP 77
GE + C C + TL +HLR G P
Sbjct: 8 GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 0.45
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 104 QLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFEC 147
+L + +R ++ K +L+ +
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 28.2 bits (62), Expect = 1.3
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPK 78
+ GE K + L + ++ K
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (58), Expect = 0.87
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 39 SSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRP 77
SS AGE+ F C KC + + ++ L H R K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 28.3 bits (64), Expect = 0.88
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCHQKCNLKSH 97
GE F C C K + + L H G++ F C C+ + K N+K H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKH 93
Score = 27.6 bits (62), Expect = 1.6
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCHQKCNLKSH 97
+ C C Y + + L AHL G++P F C C K +L H
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRH 63
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 26.4 bits (59), Expect = 1.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 45 AGEDVFACPKCSKTYLRQYTLNAHLRY-ECGKRPKFKCPHCNK 86
+ + C C K + R LN H++ +RP KC
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVS 49
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.8 bits (56), Expect = 1.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 50 FACPKCSKTYLRQYTLNAHLR 70
FACP C K ++R L+ H++
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
Score = 24.7 bits (53), Expect = 3.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 123 SFICPKCSNRYVYKHNLKQHLK 144
+F CP C R++ L +H+K
Sbjct: 2 AFACPACPKRFMRSDALSKHIK 23
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.6 bits (57), Expect = 1.6
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSH 97
G++P +KC C + Q +L++H
Sbjct: 8 GEKP-YKCETCGARFVQVAHLRAH 30
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Length = 83
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 39 SSEDKPAGEDVFACPKCS 56
+D GE V CP CS
Sbjct: 35 YLDDMFEGEKVAVCPSCS 52
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECGKR 76
+ +F C C+K + +++L AHLR ++
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 1.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 107 APLAPRSYRRNSQLNGSFICPKCSNR 132
+ R+ RR LN CP+C
Sbjct: 5 ESIDKRAGRRGPNLNIVLTCPECKVY 30
Score = 25.8 bits (56), Expect = 7.9
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 8/47 (17%)
Query: 38 SSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC 84
+ P V CP+C + Y R+ G C C
Sbjct: 10 RAGRRGPNLNIVLTCPEC-----KVYPPKIVERFSEGDV---VCALC 48
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 25.6 bits (57), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 67 AHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ G++P F+C HC K K NL +H
Sbjct: 2 SSGSSGTGQKP-FECTHCGKSFRAKGNLVTH 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 2.4
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 153 FKCPYCDKRCKLKGNLMSHIALKHT 177
+KCP C +K NL H+ KHT
Sbjct: 10 YKCPQCSYASAIKANLNVHLR-KHT 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 25.0 bits (55), Expect = 3.3
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 46 GEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKC 81
GE FAC P C + R L+ H R G +P
Sbjct: 9 GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGP 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.9
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 67 AHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ G++P +KC C K + K NL H
Sbjct: 2 SSGSSGTGEKP-YKCEKCGKGYNSKFNLDMH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.9 bits (55), Expect = 4.0
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRP 77
GE F C +C + +L HLR P
Sbjct: 9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 26.6 bits (58), Expect = 4.0
Identities = 21/137 (15%), Positives = 35/137 (25%), Gaps = 20/137 (14%)
Query: 47 EDVFACPKCSKTYLRQY-TLNAHLR-----YECGKRPKFKCPHCNKKCHQKCNLKSHIAL 100
E + CP C T H + + KCP N+ + + A
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75
Query: 101 KHDQLLAPLAPRSYRRNSQLNGSF------------ICPKCSNRYVYKHNLKQHLKFECG 148
+ L P + CP+C + H + H+ +C
Sbjct: 76 REILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFH-INIHILKDCP 134
Query: 149 VEPQFKCPYCDKRCKLK 165
C C +
Sbjct: 135 RRQ-VSCDNCAASMAFE 150
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Bartonella henselae str}
Length = 87
Score = 25.8 bits (56), Expect = 4.1
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 121 NGSFICPKCSNRYVYKHNLK--QHLKFECGVEPQ 152
ICP CS Y Y +L Q C P+
Sbjct: 46 TDEKICPYCSTLYRYDPSLSYNQTNPTGCLYNPK 79
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.8 bits (54), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 43 KPAGEDVFAC--PKCSKTYLRQYTLNAHLRYECGKR 76
K + F C P C+KT+ R+Y + +H++ R
Sbjct: 12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 25.6 bits (55), Expect = 4.3
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 77 PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLN 121
++C HC+ K L SH+ H++ A R RR L+
Sbjct: 24 STYQCKHCDSKLQSTAELTSHL-NIHNEEFQKRAKRQERRKQLLS 67
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger,
ADP-ribosylating toxin, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.17.1
Length = 83
Score = 25.6 bits (56), Expect = 4.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 39 SSEDKPAGEDVFACPKCS 56
+ ED GEDV CP CS
Sbjct: 42 TKEDLENGEDVATCPSCS 59
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 24.5 bits (54), Expect = 4.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRP 77
GE + C +C K++ ++ +L H R P
Sbjct: 7 GGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKC 81
GE + C +C K + R L HL+ ++
Sbjct: 9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 26.8 bits (59), Expect = 4.7
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 38 SSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKC 92
ED + +T+ T + +CG RP F+ K ++
Sbjct: 104 GLDEDSDRAIEGATATSEYQTFFNPATFGSG-EADCGLRPLFEKKSLEDKTEREL 157
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR
{Homo sapiens}
Length = 89
Score = 25.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 39 SSEDKPAGEDVFACPKCS 56
+ ED GEDV CP CS
Sbjct: 35 TKEDLENGEDVATCPSCS 52
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 26.4 bits (59), Expect = 5.0
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 129 CSNRYVYKHNLKQHLKFECGVEPQFKCPYC 158
V N + + G E P
Sbjct: 182 NRAHCVKVFNYEGQYLRQIGGEGITNYPIG 211
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.4 bits (54), Expect = 5.2
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH 83
GE F C +C K + R+ LN H + G++P
Sbjct: 9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSS 45
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET:
GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A*
3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A
1a2v_A*
Length = 692
Score = 26.8 bits (58), Expect = 5.3
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 98 IALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV 149
+ KH A R ++L S I + Y Q +
Sbjct: 372 LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDI 423
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 26.5 bits (57), Expect = 5.8
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 9 PSTDLLNLITNKRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYT---- 64
S LL + K + D + ++ + + + A + C +R
Sbjct: 172 TSAMLLQRLKMKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRA 231
Query: 65 ----------LNAHLRYECGKRPKFKCPHCNKKC 88
+L+ K+P + CP C+KK
Sbjct: 232 VTCTHLQCFDAALYLQM-NEKKPTWICPVCDKKA 264
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.0 bits (54), Expect = 5.9
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
G+ C KC ++R+ TL+ C K C K Q+ L
Sbjct: 15 GDRSQKCSKCGIIFIRRSTLSRRKTPMCEK--------CRKDSCQEAALNKD 58
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 24.1 bits (53), Expect = 6.3
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 67 AHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
G++P ++C C K QK +L H
Sbjct: 1 GSSGSSGGEKP-YRCDQCGKAFSQKGSLIVH 30
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH 83
GE+ + C +C K + R+Y L +H R G++P
Sbjct: 9 GENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSS 45
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc-
binding protein, signaling protein; NMR {Mus musculus}
SCOP: g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 24.2 bits (52), Expect = 6.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 79 FKCPHCNKKCHQKC 92
KC HC KCH KC
Sbjct: 28 VKCKHCRLKCHNKC 41
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 25.8 bits (57), Expect = 7.1
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIAL 100
+G + L + L HLR G K +C ++ + + +
Sbjct: 5 HHHSSGRENLYFQGMWDQRLVRLALLQHLRAFYGI----KVKGVRGQCDRRRHETAATEI 60
Query: 101 KH 102
Sbjct: 61 GG 62
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.0 bits (51), Expect = 7.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 121 NGSFICPKCSNRYVYKHNLKQHL 143
NG+F C +C R+ + +LK+H
Sbjct: 8 NGAFFCNECDCRFSEEASLKRHT 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 25.7 bits (56), Expect = 7.9
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 71 YECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCS 130
+ +CP C KK K +L+ D L++ + P +
Sbjct: 83 ITALRSGNKECPTCRKKLVSKRSLRPDPNF--DALISKIYPSRDEYEAHQERVLA----- 135
Query: 131 NRYVYKHNLKQHLKFEC 147
+ KHN +Q L
Sbjct: 136 --RINKHNNQQALSHSI 150
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 8.1
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 67 AHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ ++P +KC C K +++ NL H
Sbjct: 2 SSGSSGSVEKP-YKCEDCGKGYNRRLNLDMH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.6 bits (52), Expect = 8.6
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 67 AHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ G++P ++C C K + K NL H
Sbjct: 2 SSGSSGTGEKP-YECNECQKAFNTKSNLMVH 31
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 23.9 bits (52), Expect = 8.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 79 FKCPHCNKKCHQKC 92
F+C C K H+ C
Sbjct: 28 FRCQTCGYKFHEHC 41
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.1 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCD 159
R+S SF CP CS+ + Q G F+C +C
Sbjct: 7 RDSTNRASFKCPVCSSTFT-DLEANQLFDPMTG---TFRCTFCH 46
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 25.8 bits (57), Expect = 9.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 72 ECGKRPKFKCPHCNKKCHQKC 92
+CG RP F+ K ++
Sbjct: 2 DCGLRPLFEKKSLEDKTEREL 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.426
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,412,619
Number of extensions: 126413
Number of successful extensions: 1325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1188
Number of HSP's successfully gapped: 452
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)