RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16601
(177 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.0 bits (68), Expect = 0.017
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
G++P ++C C+ + Q +K HI KH
Sbjct: 5 GEKP-YECYICHARFTQSGTMKMHILQKH 32
Score = 28.4 bits (64), Expect = 0.056
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 153 FKCPYCDKRCKLKGNLMSHIALKHT 177
++C C R G + HI KHT
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
Score = 23.0 bits (50), Expect = 5.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLR 70
GE + C C + + T+ H+
Sbjct: 5 GEKPYECYICHARFTQSGTMKMHIL 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 29.7 bits (66), Expect = 0.029
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 54 KCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+C K++ + + H+ + C C KK K +L H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGH 49
Score = 27.0 bits (59), Expect = 0.27
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 128 KCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSH 171
+C + +K +H+ + C C K+ K+K +L+ H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGH 49
Score = 24.3 bits (52), Expect = 2.6
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 18/66 (27%)
Query: 79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHN 138
+ C C K K H+ + C C ++ KH+
Sbjct: 4 YPC-QCGKSFTHKSQRDRHM-----------------SMHLGLRPYGCGVCGKKFKMKHH 45
Query: 139 LKQHLK 144
L H+K
Sbjct: 46 LVGHMK 51
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.0 bits (63), Expect = 0.075
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 79 FKCPHCNKKCHQKCNLKSHIALKH 102
+ C C K + +L HI H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 28.0 bits (63), Expect = 0.090
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 149 VEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
V + C C K +L HI HT
Sbjct: 2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 23.0 bits (50), Expect = 4.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRY-ECGKRPKFKC 81
S KP + C C K + R LN H++ +RP KC
Sbjct: 1 SVGKP-----YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKC 37
Score = 22.3 bits (48), Expect = 9.6
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKC 155
+IC C + +L H+K E KC
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.4 bits (61), Expect = 0.13
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 68 HLRYECGKRPKFKCPHCNKKCHQKCNLKSHI 98
R G +P F+CP C++ + +L H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHR 31
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.15
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSHIALKHD 103
G++P + C HC+K QK L H HD
Sbjct: 5 GEKP-YACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 23.1 bits (50), Expect = 3.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLR 70
GE +AC C KT+ ++ L+ H +
Sbjct: 5 GEKPYACSHCDKTFRQKQLLDMHFK 29
Score = 22.7 bits (49), Expect = 6.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 150 EPQFKCPYCDKRCKLKGNLMSHIALKH 176
E + C +CDK + K L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 21.9 bits (47), Expect = 9.8
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 124 FICPKCSNRYVYKHNLKQHLK 144
+ C C + K L H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.8 bits (60), Expect = 0.17
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSH 97
G++P + C C K + L H
Sbjct: 4 GEKP-YGCVECGKAFSRSSILVQH 26
Score = 24.1 bits (53), Expect = 1.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLR 70
GE + C +C K + R L H R
Sbjct: 4 GEKPYGCVECGKAFSRSSILVQHQR 28
Score = 23.3 bits (51), Expect = 3.1
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 153 FKCPYCDKRCKLKGNLMSH 171
+ C C K L+ H
Sbjct: 8 YGCVECGKAFSRSSILVQH 26
Score = 22.6 bits (49), Expect = 6.0
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 124 FICPKCSNRYVYKHNLKQHLK 144
+ C +C + L QH +
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 25.1 bits (55), Expect = 0.71
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 74 GKRPKFKCPHCNKKCHQKCNLKSH 97
GKRP F C C K N H
Sbjct: 4 GKRP-FVCRICLSAFTTKANCARH 26
Score = 22.8 bits (49), Expect = 5.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 46 GEDVFACPKCSKTYLRQYTLNAHLR 70
G+ F C C + + HL+
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLK 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 24.9 bits (55), Expect = 0.90
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 79 FKCPHCNKKCHQKCNLKSHI 98
F C C + ++ +LK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
Score = 22.6 bits (49), Expect = 5.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 153 FKCPYCDKRCKLKGNLMSHI 172
F C C + + +L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (54), Expect = 0.95
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 79 FKCPHCNKKCHQKCNLKSH 97
F CP C K+ + +L H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
Score = 22.7 bits (49), Expect = 5.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 153 FKCPYCDKRCKLKGNLMSH 171
F CP C KR +L H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
Score = 21.9 bits (47), Expect = 9.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 124 FICPKCSNRYVYKHNLKQHLK 144
F CP+C R++ +L +H+K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 25.1 bits (54), Expect = 1.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 50 FACPKCSKTYLRQYTLNAH 68
F C KC KT+ R+ T+ H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.4 bits (56), Expect = 1.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLR 70
D P G + C C++ ++ L H R
Sbjct: 8 PDLP-GGGLHRCLACARYFIDSTNLKTHFR 36
Score = 23.1 bits (50), Expect = 7.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 152 QFKCPYCDKRCKLKGNLMSHIALK 175
+C C + NL +H K
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRSK 38
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 24.7 bits (54), Expect = 1.2
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 68 HLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
+ +R +KC C K +L H
Sbjct: 3 SEWQQRERRR-YKCDECGKSFSHSSDLSKH 31
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 25.6 bits (56), Expect = 1.2
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKR 161
CPKC +R Q + + + F C C
Sbjct: 24 RECPKCHSRENV-FFQSQQRRKDTSMVLFFVCLSCSHI 60
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 1.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 79 FKCPHCNKKCHQKCNLKSHIALKHDQ 104
++C +C + NLK+HI KH +
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSK 28
Score = 24.3 bits (52), Expect = 1.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 153 FKCPYCDKRCKLKGNLMSHIALKHT 177
++C YC+ R NL +HI KH+
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.5 bits (54), Expect = 1.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 79 FKCPHCNKKCHQKCNLKSH 97
F+C C + + +L +H
Sbjct: 4 FQCRICMRNFSRSDHLTTH 22
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3,
DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 82
Score = 25.5 bits (56), Expect = 1.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 39 SSEDKPAGEDVFACPKCS 56
+D GE V CP CS
Sbjct: 34 YLDDMFEGEKVAVCPSCS 51
>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission
yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
Length = 61
Score = 25.2 bits (55), Expect = 1.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 64 TLNAHLRYECGKRPKFKCPHCNKKCHQKC 92
TL +L ++ G NKKC QK
Sbjct: 25 TLEIYLTWKNGAISHHPSTITNKKCPQKM 53
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.9 bits (51), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 79 FKCPHCNKKCHQKCNLKSHIALKHDQL 105
F C HC K+ +K H+ H+ L
Sbjct: 3 FTCHHCGKQLRSLAGMKYHVMANHNSL 29
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.9 bits (51), Expect = 2.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKR 76
CP C K +L +Y L H R G++
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 25.7 bits (56), Expect = 2.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 154 KCPYCDKRCKLKGNLMSH 171
P C K+C+ G L S+
Sbjct: 3 DAPTCPKQCRRTGTLQSN 20
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 24.6 bits (54), Expect = 2.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 39 SSEDKPAGEDVFACPKCS 56
+ ED GEDV CP CS
Sbjct: 35 TKEDLENGEDVATCPSCS 52
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.6 bits (53), Expect = 2.7
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 77 PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLN 121
++C HC+ K L SH+ H++ A R RR L+
Sbjct: 17 STYQCKHCDSKLQSTAELTSHL-NIHNEEFQKRAKRQERRKQLLS 60
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 25.7 bits (56), Expect = 3.8
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRY--ECG-------KRPKFKCPHCNKKCHQK 91
+ K + + A + +L + +N + CG F C C + +K
Sbjct: 487 DMKNNLKGLEAVWDYAAQHLDYFGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPKK 546
Query: 92 CNLKSHI 98
N
Sbjct: 547 MNTIRRT 553
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.1 bits (50), Expect = 3.9
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 52 CPKCSKTYLRQYTLNAHLRYECGKRPKFKC 81
P C K++ + L H++ R + C
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRD-YIC 34
Score = 23.1 bits (50), Expect = 4.6
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 123 SFIC--PKCSNRYVYKHNLKQHLKFECGVEPQFKCPY 157
SF C P C + +K +LK+H+K + C +
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 23.1 bits (49), Expect = 4.0
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKR 76
F C C + TL AH Y C R
Sbjct: 9 FMCLPCGIAFSSPSTLEAHQAYYCSHR 35
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 25.7 bits (56), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 RLSSIQPPSTDLLNLITNKRTASSD 26
S+I P +DL+NL ++TA D
Sbjct: 221 MTSAIPPLLSDLVNLAILQQTAGLD 245
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 78 KFKCPHCNKKCHQKCNLKSHIALKH 102
KF CPHC+ +K +L H+ +H
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQH 26
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
(Hansenula polymorpha) [TaxId: 4905]}
Length = 436
Score = 25.3 bits (55), Expect = 4.9
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 98 IALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV 149
+ KH A R ++L S I + Y Q +
Sbjct: 136 LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDI 187
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 23.6 bits (51), Expect = 5.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 116 RNSQLNGSFICPKCSNRY 133
R+S SF CP CS+ +
Sbjct: 7 RDSTNRASFKCPVCSSTF 24
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 22.3 bits (47), Expect = 6.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 50 FACPKCSKTYLRQYTLNAHLRYECGKR 76
F CPKC K Y R+ L H C R
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNCMNR 28
Score = 22.3 bits (47), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 124 FICPKCSNRYVYKHNLKQHLKFEC 147
F CPKC Y K NL +H C
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNC 25
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.3 bits (47), Expect = 6.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 153 FKCPYCDKRCKLKGNLMSHIALKH 176
+ CP+C K K N+ +H+ + H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.426
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,363
Number of extensions: 28751
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 160
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)