BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16604
         (194 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 316

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 97/163 (59%), Gaps = 17/163 (10%)

Query: 43  AVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATEVRISKRGKLQVKN 102
           AV    K TCKCHG+SGSCS+ TCW QL  FR+IG  L+ K+D A ++ + KR K++  N
Sbjct: 150 AVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKR-KMRSGN 208

Query: 103 PRFSRPTVND---------LVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLD-----S 148
              +R  + D         L+++++SP+YC++N SLG  GT+GREC ++ + L      S
Sbjct: 209 SADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRS 268

Query: 149 CHLLC--CGRGYNTAKVTRTFRCRCKFHWCCHVQCQQCTEIGI 189
           C  LC  CG      K      C CKFHWCC V+C+QC ++ I
Sbjct: 269 CKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVI 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.471 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,615,286
Number of Sequences: 62578
Number of extensions: 210537
Number of successful extensions: 642
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 3
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)