Query psy16604
Match_columns 194
No_of_seqs 127 out of 739
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:12:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 100.0 9.4E-76 2E-80 524.8 15.3 179 14-192 167-354 (356)
2 smart00097 WNT1 found in Wnt-1 100.0 2.5E-71 5.4E-76 491.1 15.4 179 14-192 118-303 (305)
3 PF00110 wnt: wnt family; Int 100.0 2E-68 4.2E-73 473.3 4.1 179 14-192 122-308 (310)
4 KOG3913|consensus 69.0 0.91 2E-05 41.9 -1.5 24 1-24 220-243 (356)
5 smart00097 WNT1 found in Wnt-1 64.2 1.7 3.6E-05 39.2 -0.8 24 1-24 171-194 (305)
6 PF00110 wnt: wnt family; Int 34.1 7.1 0.00015 35.1 -1.8 24 2-25 176-199 (310)
7 cd09243 BRO1_Brox_like Protein 18.8 84 0.0018 28.9 2.2 35 73-127 306-340 (353)
8 PRK07758 hypothetical protein; 13.4 1.4E+02 0.0029 22.8 1.8 17 30-46 65-82 (95)
9 PRK09019 translation initiatio 12.3 2.6E+02 0.0056 21.6 3.1 17 110-126 5-21 (108)
10 COG2001 Uncharacterized protei 11.7 1.7E+02 0.0036 23.9 1.9 30 68-97 59-89 (146)
No 1
>KOG3913|consensus
Probab=100.00 E-value=9.4e-76 Score=524.83 Aligned_cols=179 Identities=50% Similarity=1.036 Sum_probs=171.6
Q ss_pred CCchhhHHHhhc-cCCCChhhHhhccc---hhHHHHhcccceeeeccccCCcchhhhhccCCChhHHHHHHHHcccccce
Q psy16604 14 IELPYKTDALSS-KLTRPARFNFDFWL---CLQAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATE 89 (194)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~r~lmnlHN---GR~~v~~~~~~~CKCHGvSGSC~~kTCW~~lp~f~~Vg~~Lk~kY~~A~~ 89 (194)
.+++||++|+|. +..+|+|+|||||| ||+||.++|+.+||||||||||++||||++||+|++||++||+||++|++
T Consensus 167 fG~~fsr~FlD~re~~~d~r~lmnlHNNeaGR~av~~~m~~~CKCHGvSGSC~~KTCW~~lp~Fr~vG~~Lk~KYd~A~~ 246 (356)
T KOG3913|consen 167 FGIRFSRKFLDAREKRKDARALMNLHNNEAGRKAVKKNMRRECKCHGVSGSCTVKTCWKQLPDFREVGDYLKEKYDGAIK 246 (356)
T ss_pred HHHHHHHHhccccccccCHHHHHHHhhhHHHHHHHHHhhhhcccccCccccchhhhHHhhCccHHHHHHHHHHHhhhheE
Confidence 467899999986 45689999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCc-----ccccCCCCCCCCCCCeEEEcCCCCCcccCCCCCCCCCCCCcccCCCCCCCCCcccccCCCeeEEEEE
Q psy16604 90 VRISKRGK-----LQVKNPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLDSCHLLCCGRGYNTAKVT 164 (194)
Q Consensus 90 V~~~~~g~-----l~~~~~~~~~~~~~dLVYle~SPdyC~~n~~~Gs~GT~GR~Cn~~s~~~~~C~~LCCGRGy~t~~~~ 164 (194)
|..++.|+ +.+.+..+++|++.||||+|+|||||++|+..||+||+||+||.+|.+.|+|++|||||||+|..++
T Consensus 247 V~~~~~~~~~~~~~~~~~~~~~~~~~~dLVYle~SPdfC~~~~~~Gs~GT~GR~Cn~ts~g~dgC~~LCCGRGynt~~~~ 326 (356)
T KOG3913|consen 247 VTVNNRGRRSAPALRPEKPRFKPPTETDLVYLEDSPDYCERNKKTGSLGTQGRECNKTSRGSDGCDLLCCGRGYNTRRVE 326 (356)
T ss_pred EeeccCCccccccccccccccCCCCCCceEEecCCChhhccCccCCCCCCCCcccCCCCCCCCCCccccCCCCCceeEEE
Confidence 99998886 6777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCcEEEeeeEEeccccceEEEEEe
Q psy16604 165 RTFRCRCKFHWCCHVQCQQCTEIGIIIY 192 (194)
Q Consensus 165 ~~~~C~CkF~WCC~V~C~~C~~~~~~~~ 192 (194)
++|+|||||||||+|+|++|.+++++|+
T Consensus 327 ~~e~C~CkFhWCC~V~C~~C~~~~~v~t 354 (356)
T KOG3913|consen 327 VVERCHCKFHWCCYVKCKECRERVEVYT 354 (356)
T ss_pred EEEecCCEEEEeeEEECcccccEEEeee
Confidence 9999999999999999999999999986
No 2
>smart00097 WNT1 found in Wnt-1.
Probab=100.00 E-value=2.5e-71 Score=491.14 Aligned_cols=179 Identities=49% Similarity=0.992 Sum_probs=167.2
Q ss_pred CCchhhHHHhhc-cCCCChhhHhhccc---hhHHHHhcccceeeeccccCCcchhhhhccCCChhHHHHHHHHcccccce
Q psy16604 14 IELPYKTDALSS-KLTRPARFNFDFWL---CLQAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATE 89 (194)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~r~lmnlHN---GR~~v~~~~~~~CKCHGvSGSC~~kTCW~~lp~f~~Vg~~Lk~kY~~A~~ 89 (194)
.+..|+++|+|. +..+|+++|||||| ||+||.++|+++||||||||||++||||++||+|++||+.||+||++|++
T Consensus 118 ~G~~~s~~FlD~~~~~~d~r~lmnlHNn~aGR~~v~~~~~~~CkCHGvSGSC~~kTCw~~l~~Fr~Ig~~Lk~kY~~A~~ 197 (305)
T smart00097 118 FGIRFSREFVDARERGKDARALMNLHNNEAGRLAVKKTMKRECKCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKYDGASE 197 (305)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHhhhHHHHHHHHHHHHHhccccCccCCccccchHhhCCCHHHHHHHHHHHhccceE
Confidence 367889999985 45679999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCc---ccccCCCCCCCCCCCeEEEcCCCCCcccCCCCCCCCCCCCcccCCCCCCCCCcccccCCCeeEEEEEEE
Q psy16604 90 VRISKRGK---LQVKNPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLDSCHLLCCGRGYNTAKVTRT 166 (194)
Q Consensus 90 V~~~~~g~---l~~~~~~~~~~~~~dLVYle~SPdyC~~n~~~Gs~GT~GR~Cn~~s~~~~~C~~LCCGRGy~t~~~~~~ 166 (194)
|.+.+.+. +.+.++.+++|+++||||||+|||||++|+..||+||+||+||+++.++++|++|||||||+|++++++
T Consensus 198 V~~~~~~~~~~l~~~~~~~~~~~~~dLVYle~SPdyC~~n~~~G~~GT~GR~Cn~~s~~~~~C~~LCCgRGy~t~~~~~~ 277 (305)
T smart00097 198 VEVDKRGTNKAPVPKNSTFKPPTETDLVYLESSPDFCEKNPKTGSLGTQGRQCNKTSKGLDGCDLLCCGRGYNTRTVEVV 277 (305)
T ss_pred eeecccccccccccCCccCCCCCCCCeEEeCCCCcccccCCCcCCCCCCCCccCCCCCCCCChhhcCCCCCceeEEEEEE
Confidence 98877654 445555667889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCcEEEeeeEEeccccceEEEEEe
Q psy16604 167 FRCRCKFHWCCHVQCQQCTEIGIIIY 192 (194)
Q Consensus 167 ~~C~CkF~WCC~V~C~~C~~~~~~~~ 192 (194)
++|||||+|||+|+|++|.++++++|
T Consensus 278 ~~C~CkF~WCC~V~C~~C~~~~~~~~ 303 (305)
T smart00097 278 ERCNCKFHWCCYVKCKQCRETVEKHT 303 (305)
T ss_pred EecCCEEEEeeEEECccCCcEEEEEE
Confidence 99999999999999999999999887
No 3
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=100.00 E-value=2e-68 Score=473.32 Aligned_cols=179 Identities=47% Similarity=0.967 Sum_probs=128.6
Q ss_pred CCchhhHHHhhcc-CCCChhhHhhccc---hhHHHHhcccceeeeccccCCcchhhhhccCCChhHHHHHHHHcccccce
Q psy16604 14 IELPYKTDALSSK-LTRPARFNFDFWL---CLQAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATE 89 (194)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~r~lmnlHN---GR~~v~~~~~~~CKCHGvSGSC~~kTCW~~lp~f~~Vg~~Lk~kY~~A~~ 89 (194)
.+++||++|++.. ...+++++||+|| ||+||.++|+.+||||||||||++||||++||+|++||+.|++||++|++
T Consensus 122 ~G~~~sr~Fld~~~~~~~~~~~mn~HNn~aGR~~v~~~~~~~CkCHGvSGSC~~ktCw~~l~~f~~Ig~~Lk~kY~~A~~ 201 (310)
T PF00110_consen 122 FGIKFSRRFLDAREKGSDARSLMNLHNNEAGRKAVKKNMKKKCKCHGVSGSCTVKTCWRSLPPFREIGDYLKEKYDSAVK 201 (310)
T ss_dssp HHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHHHT-EEEEEE-SGGG-TTSEEEEEE---HHHHHHHHHHHHHT-EE
T ss_pred cchHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhcccccceEccccccCCCcceEEEEcCCcHHHHHHHHHHHhhcccc
Confidence 3568999999864 4789999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCccccc----CCCCCCCCCCCeEEEcCCCCCcccCCCCCCCCCCCCcccCCCCCCCCCcccccCCCeeEEEEEE
Q psy16604 90 VRISKRGKLQVK----NPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLDSCHLLCCGRGYNTAKVTR 165 (194)
Q Consensus 90 V~~~~~g~l~~~----~~~~~~~~~~dLVYle~SPdyC~~n~~~Gs~GT~GR~Cn~~s~~~~~C~~LCCGRGy~t~~~~~ 165 (194)
|.+.+.+..... ...+++|+.+||||+|+|||||++|+..||+||+||+||.++.++++|+.|||||||+|+++++
T Consensus 202 v~~~~~~~~~~~~~~~~~~~~~~~~~~LvY~~~SPdyC~~d~~~G~~GT~GR~C~~~~~~~~~C~~LCCGrGy~t~~~~~ 281 (310)
T PF00110_consen 202 VKPNNNGNRSKPSPRKNKRFKPPTSTDLVYLEKSPDYCEPDPSTGSLGTRGRECNKTSSGPDSCDNLCCGRGYRTRTEEV 281 (310)
T ss_dssp -----------------HHHHTS-SSS-EE-S----TTSEETTTTEE-STT-EE----THHTHHHHHTGT-EEEEEEEEE
T ss_pred ccccccccccccccccccccCCCCCceEEEECCCCcceeeccccccCcccccccCCCCCCCCCCceeEcCCccceEEEEE
Confidence 998877642111 2224578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCcEEEeeeEEeccccceEEEEEe
Q psy16604 166 TFRCRCKFHWCCHVQCQQCTEIGIIIY 192 (194)
Q Consensus 166 ~~~C~CkF~WCC~V~C~~C~~~~~~~~ 192 (194)
+++|||||+|||+|+|++|++++++||
T Consensus 282 ~~~CnCkF~WCC~V~C~~C~~~~~~~~ 308 (310)
T PF00110_consen 282 EEKCNCKFHWCCEVKCDTCKKTVTVYT 308 (310)
T ss_dssp EEE-S-B--SSS--B--EEEEEEEEEE
T ss_pred EeeECCEEEeeeEEECCcCcEEEEEEE
Confidence 999999999999999999999999987
No 4
>KOG3913|consensus
Probab=68.97 E-value=0.91 Score=41.90 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=18.7
Q ss_pred CcccccccccCCCCCchhhHHHhh
Q psy16604 1 MITCWQQLTPFREIELPYKTDALS 24 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (194)
|-|||+||.||++|+-.-..++-.
T Consensus 220 ~KTCW~~lp~Fr~vG~~Lk~KYd~ 243 (356)
T KOG3913|consen 220 VKTCWKQLPDFREVGDYLKEKYDG 243 (356)
T ss_pred hhhHHhhCccHHHHHHHHHHHhhh
Confidence 469999999999998666555443
No 5
>smart00097 WNT1 found in Wnt-1.
Probab=64.22 E-value=1.7 Score=39.24 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.4
Q ss_pred CcccccccccCCCCCchhhHHHhh
Q psy16604 1 MITCWQQLTPFREIELPYKTDALS 24 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (194)
+-|||++|.||++|+.....++..
T Consensus 171 ~kTCw~~l~~Fr~Ig~~Lk~kY~~ 194 (305)
T smart00097 171 VKTCWLQLPDFRKVGDYLKEKYDG 194 (305)
T ss_pred ccchHhhCCCHHHHHHHHHHHhcc
Confidence 359999999999999888877765
No 6
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=34.13 E-value=7.1 Score=35.13 Aligned_cols=24 Identities=46% Similarity=0.717 Sum_probs=16.6
Q ss_pred cccccccccCCCCCchhhHHHhhc
Q psy16604 2 ITCWQQLTPFREIELPYKTDALSS 25 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (194)
-|||.+|.||++|+..-..++.++
T Consensus 176 ktCw~~l~~f~~Ig~~Lk~kY~~A 199 (310)
T PF00110_consen 176 KTCWRSLPPFREIGDYLKEKYDSA 199 (310)
T ss_dssp EEEEEE---HHHHHHHHHHHHHT-
T ss_pred eEEEEcCCcHHHHHHHHHHHhhcc
Confidence 489999999999988777776653
No 7
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=18.80 E-value=84 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.460 Sum_probs=23.8
Q ss_pred hhHHHHHHHHcccccceEEeccCCcccccCCCCCCCCCCCeEEEcCCCCCcccCC
Q psy16604 73 FREIGEFLRDKYDSATEVRISKRGKLQVKNPRFSRPTVNDLVYIDESPNYCVRNP 127 (194)
Q Consensus 73 f~~Vg~~Lk~kY~~A~~V~~~~~g~l~~~~~~~~~~~~~dLVYle~SPdyC~~n~ 127 (194)
|+.+.+.++.++++|. .++|+||++.-|+--....
T Consensus 306 ~~~l~~~I~~~L~~ae--------------------KDNdfIYh~~VP~e~p~~e 340 (353)
T cd09243 306 FRKLGPLVKRTLEKCE--------------------RENGFIYHQKVPDEVPQLE 340 (353)
T ss_pred HHHHHHHHHHHHHHHh--------------------hhhceeccccCCCCCCccc
Confidence 5566666666666553 3679999999997654433
No 8
>PRK07758 hypothetical protein; Provisional
Probab=13.41 E-value=1.4e+02 Score=22.81 Aligned_cols=17 Identities=0% Similarity=-0.111 Sum_probs=13.3
Q ss_pred ChhhHhhccc-hhHHHHh
Q psy16604 30 PARFNFDFWL-CLQAVIR 46 (194)
Q Consensus 30 ~~r~lmnlHN-GR~~v~~ 46 (194)
....|+++|| |.+++.+
T Consensus 65 te~ELl~iknlGkKSL~E 82 (95)
T PRK07758 65 SEKEILKLHGMGPASLPK 82 (95)
T ss_pred CHHHHHHccCCCHHHHHH
Confidence 3456899999 9987665
No 9
>PRK09019 translation initiation factor Sui1; Validated
Probab=12.33 E-value=2.6e+02 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.7
Q ss_pred CCCeEEEcCCCCCcccC
Q psy16604 110 VNDLVYIDESPNYCVRN 126 (194)
Q Consensus 110 ~~dLVYle~SPdyC~~n 126 (194)
...|||..++|++|...
T Consensus 5 ~~~lvyst~~g~~~~~~ 21 (108)
T PRK09019 5 NSRLVYSTDTGRIDEEK 21 (108)
T ss_pred CCCEEEeCCCCccCccc
Confidence 45699999999998554
No 10
>COG2001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=11.65 E-value=1.7e+02 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.9
Q ss_pred ccCCChhHHHHHHHHc-ccccceEEeccCCc
Q psy16604 68 QQLTPFREIGEFLRDK-YDSATEVRISKRGK 97 (194)
Q Consensus 68 ~~lp~f~~Vg~~Lk~k-Y~~A~~V~~~~~g~ 97 (194)
..||.+...+..+... +.+|++|.++..|+
T Consensus 59 ~~l~~~~~~aR~~~r~~~~~a~e~elD~~GR 89 (146)
T COG2001 59 SALPSTDPEARAFQRLLFGGAVEVELDGAGR 89 (146)
T ss_pred HcCCCCCHHHHHHHHHHhccceEEeECCCCC
Confidence 5688888887777665 45799999999887
Done!