Query psy16604
Match_columns 194
No_of_seqs 127 out of 739
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:12:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 6.8E-73 2.3E-77 501.9 5.4 178 15-192 118-314 (316)
2 4f0a_B Protein WNT-8, XWNT-8; 65.4 0.8 2.7E-05 40.2 -1.3 25 1-25 170-194 (316)
3 2oq9_A Minicollagen-5; disulfi 29.6 18 0.00062 20.0 0.8 12 146-157 14-25 (26)
4 3tvj_I Protease inhibitor SGPI 17.8 29 0.001 21.3 0.2 17 50-66 18-36 (38)
5 2lfw_B NEPR anti sigma factor; 16.4 38 0.0013 22.9 0.5 17 73-89 25-41 (62)
6 4a1x_C CP5-46-A peptide; hydro 13.5 87 0.003 17.2 1.4 12 111-122 4-15 (26)
7 3nm9_A HMG-D, high mobility gr 12.4 44 0.0015 21.9 -0.1 24 65-88 40-66 (73)
8 3fgh_A Transcription factor A, 11.5 54 0.0018 21.0 0.2 23 66-88 36-63 (67)
9 4a3n_A Transcription factor SO 11.3 71 0.0024 20.4 0.7 22 66-87 40-66 (71)
10 1n0e_A Protein MRAZ; cell divi 11.2 78 0.0027 25.0 1.0 30 68-97 81-111 (166)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=6.8e-73 Score=501.90 Aligned_cols=178 Identities=39% Similarity=0.787 Sum_probs=161.0
Q ss_pred CchhhHHHhhc-cCCCChhhHhhccc---hhHHHHhcccceeeeccccCCcchhhhhccCCChhHHHHHHHHcccccceE
Q psy16604 15 ELPYKTDALSS-KLTRPARFNFDFWL---CLQAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATEV 90 (194)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~r~lmnlHN---GR~~v~~~~~~~CKCHGvSGSC~~kTCW~~lp~f~~Vg~~Lk~kY~~A~~V 90 (194)
+.+|+++|++. +.++|+++|||||| ||+||.++|+++||||||||||++||||++||+|++||+.||+||+.|++|
T Consensus 118 G~~fsr~F~D~~e~~~d~r~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSCt~KTCW~~lp~Fr~VG~~LK~kyd~A~~V 197 (316)
T 4f0a_B 118 GERISKLFVDGLETGQDARALMNLHNNEAGRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKL 197 (316)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHTCEEEEEECSGGGCTTSEEEEEECCCHHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHhccccccccHHHHHHhhchHHHHHHHHhcCeeeeecCCccccccceehcccCCCHHHHHHHHHHHhhhheEe
Confidence 46799999985 66789999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EeccC----Cc----ccccCCCCCCCCCCCeEEEcCCCCCcccCCCCCCCCCCCCcccCCCCCC-----CCCcccc--cC
Q psy16604 91 RISKR----GK----LQVKNPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGL-----DSCHLLC--CG 155 (194)
Q Consensus 91 ~~~~~----g~----l~~~~~~~~~~~~~dLVYle~SPdyC~~n~~~Gs~GT~GR~Cn~~s~~~-----~~C~~LC--CG 155 (194)
.+.+. ++ +.+....+++|+++||||||+|||||++|+.+||+||+||+||++|.+. |+|++|| ||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~k~p~~~dLVYle~SPdfC~~n~~~Gs~GT~GR~Cn~tS~g~s~~~~dgCdlLC~~CG 277 (316)
T 4f0a_B 198 EMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRSCKRLCTDCG 277 (316)
T ss_dssp CC-------------CHHHHHHHHTSCSSSCEECSCCCCTTSEETTTTEECSTTCEECCCCTTCCHHHHTHHHHHTGGGT
T ss_pred eecccccccccccccccccccccCCCCCCCeEEeCCCCcccccCCCCCCCCCCCcccCCCCCCCcCCCCCCHHHHHHhcC
Confidence 77653 21 1112223467889999999999999999999999999999999999999 9999999 99
Q ss_pred CCeeEEEEEEEEeeCcEEEeeeEEeccccceEEEEEe
Q psy16604 156 RGYNTAKVTRTFRCRCKFHWCCHVQCQQCTEIGIIIY 192 (194)
Q Consensus 156 RGy~t~~~~~~~~C~CkF~WCC~V~C~~C~~~~~~~~ 192 (194)
|||+|++++++|+|||||||||+|+|++|.+++++|+
T Consensus 278 RGy~t~~~~~~erC~CkF~WCC~V~C~~C~~~~~~~~ 314 (316)
T 4f0a_B 278 LRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVIKHF 314 (316)
T ss_dssp CCEEEEEEEEEEECSCBCCSSSCCBCCEEEEEEEEEE
T ss_pred CceeEEEEEEEEeeCCEEEeeeEEECCcCCeEEEEEE
Confidence 9999999999999999999999999999999999986
No 2
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=65.41 E-value=0.8 Score=40.17 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.2
Q ss_pred CcccccccccCCCCCchhhHHHhhc
Q psy16604 1 MITCWQQLTPFREIELPYKTDALSS 25 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (194)
|-|||.+|.||++|+-.-+.+|-.+
T Consensus 170 ~KTCW~~lp~Fr~VG~~LK~kyd~A 194 (316)
T 4f0a_B 170 IQTCWLQLAEFRDIGNHLKIKHDQA 194 (316)
T ss_dssp SEEEEEECCCHHHHHHHHHHHHHTC
T ss_pred ceehcccCCCHHHHHHHHHHHhhhh
Confidence 4599999999999998888877653
No 3
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=29.64 E-value=18 Score=20.02 Aligned_cols=12 Identities=50% Similarity=1.248 Sum_probs=9.5
Q ss_pred CCCCcccccCCC
Q psy16604 146 LDSCHLLCCGRG 157 (194)
Q Consensus 146 ~~~C~~LCCGRG 157 (194)
..+|..-||||.
T Consensus 14 mascapqccgr~ 25 (26)
T 2oq9_A 14 MASCAPQCCGRX 25 (26)
T ss_dssp CTTTTTTTTCC-
T ss_pred HHhccHHhhcCC
Confidence 358999999995
No 4
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=17.78 E-value=29 Score=21.26 Aligned_cols=17 Identities=41% Similarity=1.050 Sum_probs=14.0
Q ss_pred ceeeec--cccCCcchhhh
Q psy16604 50 VTCKCH--GVSGSCSMITC 66 (194)
Q Consensus 50 ~~CKCH--GvSGSC~~kTC 66 (194)
-.|+|- |.+.+|+.|.|
T Consensus 18 NtC~C~~dG~~a~CT~k~C 36 (38)
T 3tvj_I 18 NTCRCGSDGKSAVCTKLWC 36 (38)
T ss_dssp EEEEECTTSSCEEEECCEE
T ss_pred ceeECCCCCceeEeecccC
Confidence 368886 89999999877
No 5
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=16.36 E-value=38 Score=22.89 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.6
Q ss_pred hhHHHHHHHHcccccce
Q psy16604 73 FREIGEFLRDKYDSATE 89 (194)
Q Consensus 73 f~~Vg~~Lk~kY~~A~~ 89 (194)
=.+||..|+..|+.++.
T Consensus 25 ~~~Ig~~LR~~Yd~vv~ 41 (62)
T 2lfw_B 25 DRDMGAALRSAYQKTIE 41 (62)
T ss_dssp STTHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36899999999998874
No 6
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=13.48 E-value=87 Score=17.22 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=10.2
Q ss_pred CCeEEEcCCCCC
Q psy16604 111 NDLVYIDESPNY 122 (194)
Q Consensus 111 ~dLVYle~SPdy 122 (194)
..|||+-+.|.|
T Consensus 4 grlvylldgpgy 15 (26)
T 4a1x_C 4 GRLVYLLDGPGY 15 (26)
T ss_pred ceEEEEecCCCC
Confidence 369999999977
No 7
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=12.36 E-value=44 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=18.1
Q ss_pred hhhccCCC---hhHHHHHHHHcccccc
Q psy16604 65 TCWQQLTP---FREIGEFLRDKYDSAT 88 (194)
Q Consensus 65 TCW~~lp~---f~~Vg~~Lk~kY~~A~ 88 (194)
.-|+.|++ |.+.+..++++|....
T Consensus 40 ~~Wk~ls~K~~y~~~A~~~k~~y~~~~ 66 (73)
T 3nm9_A 40 ELWRAMKDKSEWEAKAAKAKDDYDRAV 66 (73)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 35999984 6678888888887653
No 8
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=11.54 E-value=54 Score=21.01 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=18.3
Q ss_pred hhccCCC-----hhHHHHHHHHcccccc
Q psy16604 66 CWQQLTP-----FREIGEFLRDKYDSAT 88 (194)
Q Consensus 66 CW~~lp~-----f~~Vg~~Lk~kY~~A~ 88 (194)
-|+.|++ |.+.+..++++|...+
T Consensus 36 ~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 36 NWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999985 7788888998887653
No 9
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=11.27 E-value=71 Score=20.39 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=17.6
Q ss_pred hhccCCC-----hhHHHHHHHHccccc
Q psy16604 66 CWQQLTP-----FREIGEFLRDKYDSA 87 (194)
Q Consensus 66 CW~~lp~-----f~~Vg~~Lk~kY~~A 87 (194)
-|+.|++ |.+.+..++++|..+
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 66 (71)
T 4a3n_A 40 SWKALTLAEKRPFVEEAERLRVQHMQD 66 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4998886 778888888888765
No 10
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB: 1n0f_A 1n0g_A
Probab=11.23 E-value=78 Score=24.98 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=23.6
Q ss_pred ccCCChhHHHHHHHHc-ccccceEEeccCCc
Q psy16604 68 QQLTPFREIGEFLRDK-YDSATEVRISKRGK 97 (194)
Q Consensus 68 ~~lp~f~~Vg~~Lk~k-Y~~A~~V~~~~~g~ 97 (194)
.+||.|..-...++.. |..|..+.+++.|+
T Consensus 81 ~~l~~~~~~~r~~~R~~~~~A~e~elD~qGR 111 (166)
T 1n0e_A 81 NSFPSTQKDTRTLKRLIFANANFVDVDTAGR 111 (166)
T ss_dssp TTSCSSSHHHHHHHHHHHTTCCEEECCTTSE
T ss_pred HcCCCCCHHHHHHHHHHhcCceEeeECCCce
Confidence 5688888777777665 56799999999897
Done!