RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16604
         (194 letters)



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
           frizzled, fatty acylation, glycosylation, signaling
           protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
           laevis}
          Length = 316

 Score =  148 bits (375), Expect = 2e-44
 Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 15/161 (9%)

Query: 42  QAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATEVRISKRG----- 96
            AV    K TCKCHG+SGSCS+ TCW QL  FR+IG  L+ K+D A ++ + KR      
Sbjct: 149 LAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKRKMRSGN 208

Query: 97  ---KLQVKNPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLD-----S 148
                      FS    ++L+++++SP+YC++N SLG  GT+GREC ++ + L      S
Sbjct: 209 SADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRS 268

Query: 149 CHLLCC--GRGYNTAKVTRTFRCRCKFHWCCHVQCQQCTEI 187
           C  LC   G      K      C CKFHWCC V+C+QC ++
Sbjct: 269 CKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQV 309


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.047
 Identities = 30/211 (14%), Positives = 48/211 (22%), Gaps = 92/211 (43%)

Query: 3   TCWQQLTPFREIELPYKT---------DALSSKLTRPAR------------FNFDFWL-- 39
             +++L   R++   Y+T            +  L+   R             N   WL  
Sbjct: 168 DYFEEL---RDL---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221

Query: 40  ----------------C-----LQAVIRASKVTCKCHGVS------GSCSMITC------ 66
                           C     +Q       VT K  G +                    
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279

Query: 67  ---------WQQLTPFREIGEFLRDKYDSATEV--RISKRGKLQVKNPRFSRP--TVNDL 113
                    W+          F       A  V   I  R       P  S P   + D 
Sbjct: 280 AVAIAETDSWE---------SFF-VSVRKAITVLFFIGVRC--YEAYPNTSLPPSILEDS 327

Query: 114 VYIDE---SPNYCVRNPSLGSLGTQGRECNR 141
           +  +E   SP   + N +   +     + N 
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.086
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 35/134 (26%)

Query: 76  IGEFLRDKYD--------------SATEVRISKRGKLQVKNPRFSRPTVNDLVYIDESPN 121
           + E LR  Y                 T + I +R +L   N  F++  V+ L    +   
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--- 139

Query: 122 YCVRNPSLGSLGTQGRECNRTSRGLDSCHLLCCGRGYNTAKVTRTFRCRCKF----HWCC 177
             +R  +L  L        R ++ +    +L  G+ +    V  +++ +CK      W  
Sbjct: 140 --LRQ-ALLEL--------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-- 186

Query: 178 HVQCQQCTEIGIII 191
            +  + C     ++
Sbjct: 187 -LNLKNCNSPETVL 199


>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding
           protein, RNA binding protein, tRNA modification,
           4-thiouridine synthase; HET: AMP; 2.5A {Bacillus
           anthracis} SCOP: c.26.2.6 d.308.1.1
          Length = 413

 Score = 28.3 bits (63), Expect = 1.5
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 24/82 (29%)

Query: 74  REIGEFLRDKYDSATEVRISKRGKLQVKNPRFSRPTVN-----DLVYIDESPNYCVRNPS 128
            EIG  + +  +            + V NP      V         YI      C     
Sbjct: 136 PEIGGHILENTEDI---------TVDVHNPDV---NVRVEIRSGYSYI-----MCDERMG 178

Query: 129 LGSL--GTQGRECNRTSRGLDS 148
            G L  G  G+     S G+DS
Sbjct: 179 AGGLPVGVGGKVMVLLSGGIDS 200


>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase,
           hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
           SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
          Length = 1122

 Score = 28.0 bits (61), Expect = 2.4
 Identities = 24/139 (17%), Positives = 38/139 (27%), Gaps = 7/139 (5%)

Query: 2   ITCWQQLTPFREIELPYKTDALSSKLTRPARFNFDFWLCLQAVIRASKVTCKC-HGVSGS 60
                Q    R        + L S  T P       ++C   +     V  +    +   
Sbjct: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFIC--GISALPPVYLQALQALGKH 233

Query: 61  CSMITCWQQLTPFRE-IGEFLRDKYDSATEVRISKRGKLQVKNPRFSRPTVNDLVYIDES 119
             +   +    P R   G+     Y +    R  +      + P F     N     +  
Sbjct: 234 IEIHLLF--TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE-NAGQLFNSD 290

Query: 120 PNYCVRNPSLGSLGTQGRE 138
               V NP L S G  GR+
Sbjct: 291 GEQDVGNPLLASWGKLGRD 309


>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
           nucleus, phosphorylation, chromatin regulator, UBL
           conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
           sapiens}
          Length = 159

 Score = 26.4 bits (58), Expect = 4.4
 Identities = 1/21 (4%), Positives = 3/21 (14%)

Query: 167 FRCRCKFHWCCHVQCQQCTEI 187
                  H        + +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSTS 21


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.138    0.471 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,932,740
Number of extensions: 160060
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 64
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.7 bits)