RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16604
         (194 letters)



>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
           (RecC), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 347

 Score = 31.1 bits (70), Expect = 0.062
 Identities = 15/70 (21%), Positives = 24/70 (34%)

Query: 69  QLTPFREIGEFLRDKYDSATEVRISKRGKLQVKNPRFSRPTVNDLVYIDESPNYCVRNPS 128
              P R     ++D    A  +   +R   + +     R + N     +      V NP 
Sbjct: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299

Query: 129 LGSLGTQGRE 138
           L S G  GR+
Sbjct: 300 LASWGKLGRD 309


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.471 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 777,023
Number of extensions: 35401
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 46
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)