Query psy16607
Match_columns 677
No_of_seqs 1188 out of 3076
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:15:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1129|consensus 100.0 2.3E-68 5E-73 492.0 31.3 459 11-582 4-472 (478)
2 KOG4626|consensus 100.0 1.4E-45 3.1E-50 366.9 33.8 456 7-671 44-501 (966)
3 KOG4626|consensus 100.0 1.8E-44 3.8E-49 359.2 31.9 351 295-677 122-473 (966)
4 KOG1129|consensus 100.0 4E-41 8.7E-46 311.6 27.9 461 116-674 4-477 (478)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 9.4E-37 2E-41 358.3 50.4 365 298-675 440-819 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-36 3.3E-41 356.6 50.3 606 14-676 25-651 (899)
7 PRK11447 cellulose synthase su 100.0 2.1E-35 4.4E-40 348.6 52.0 580 7-675 23-726 (1157)
8 PRK11447 cellulose synthase su 100.0 5.9E-33 1.3E-37 327.8 43.7 333 291-654 305-739 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-31 3E-36 297.5 45.5 352 292-676 130-558 (615)
10 TIGR00990 3a0801s09 mitochondr 100.0 4.2E-31 9.1E-36 293.6 48.2 263 370-662 307-578 (615)
11 PRK15174 Vi polysaccharide exp 100.0 8.5E-30 1.8E-34 282.0 45.2 336 295-663 48-389 (656)
12 PRK09782 bacteriophage N4 rece 100.0 3E-29 6.5E-34 283.0 46.5 335 302-672 355-723 (987)
13 PRK15174 Vi polysaccharide exp 100.0 2.5E-28 5.3E-33 270.4 41.8 318 328-676 46-368 (656)
14 KOG2002|consensus 100.0 7.7E-28 1.7E-32 253.5 40.9 534 14-674 131-764 (1018)
15 KOG2002|consensus 100.0 1E-27 2.3E-32 252.4 40.0 372 292-675 273-695 (1018)
16 KOG1155|consensus 100.0 2.3E-26 4.9E-31 223.7 41.0 352 288-670 163-551 (559)
17 PRK09782 bacteriophage N4 rece 100.0 9.5E-26 2.1E-30 254.8 46.9 474 122-676 50-693 (987)
18 KOG0547|consensus 100.0 1.5E-26 3.2E-31 226.2 34.0 339 294-663 120-574 (606)
19 PRK10049 pgaA outer membrane p 100.0 9.6E-26 2.1E-30 255.1 43.7 343 302-676 28-443 (765)
20 KOG1126|consensus 100.0 8.9E-27 1.9E-31 237.4 26.7 298 335-663 330-628 (638)
21 KOG1155|consensus 100.0 1.7E-25 3.7E-30 217.6 33.6 325 321-676 161-523 (559)
22 KOG0547|consensus 100.0 3.8E-26 8.1E-31 223.5 28.8 318 328-676 119-553 (606)
23 PRK10049 pgaA outer membrane p 100.0 1.8E-24 3.9E-29 244.8 44.4 343 291-664 51-465 (765)
24 KOG1126|consensus 100.0 1.7E-26 3.7E-31 235.3 24.9 295 301-627 331-626 (638)
25 PRK11788 tetratricopeptide rep 99.9 1.7E-23 3.6E-28 221.1 37.6 295 328-654 39-346 (389)
26 PRK11788 tetratricopeptide rep 99.9 6.5E-23 1.4E-27 216.6 37.0 284 356-669 34-325 (389)
27 KOG0548|consensus 99.9 4.3E-22 9.3E-27 198.5 34.5 351 296-672 9-472 (539)
28 KOG1173|consensus 99.9 4.7E-22 1E-26 198.8 32.1 286 356-670 243-533 (611)
29 PRK14574 hmsH outer membrane p 99.9 5.8E-21 1.3E-25 211.9 43.6 356 292-676 37-500 (822)
30 KOG0624|consensus 99.9 1.1E-21 2.3E-26 184.1 31.6 316 322-668 36-383 (504)
31 KOG1173|consensus 99.9 6.1E-21 1.3E-25 190.9 36.5 280 326-636 246-533 (611)
32 KOG2003|consensus 99.9 4.1E-22 8.9E-27 193.0 26.6 369 294-674 242-708 (840)
33 KOG2076|consensus 99.9 8E-21 1.7E-25 199.8 37.9 345 302-676 152-542 (895)
34 PRK14574 hmsH outer membrane p 99.9 1.4E-19 2.9E-24 201.0 48.3 338 296-663 109-521 (822)
35 KOG2003|consensus 99.9 7.5E-22 1.6E-26 191.2 25.4 339 325-676 238-676 (840)
36 KOG0495|consensus 99.9 4E-20 8.7E-25 187.1 38.0 355 299-667 526-892 (913)
37 KOG2076|consensus 99.9 2.6E-20 5.7E-25 196.0 36.4 319 328-675 143-498 (895)
38 KOG0495|consensus 99.9 8.4E-19 1.8E-23 177.6 41.4 461 21-634 416-893 (913)
39 KOG0624|consensus 99.9 5.6E-20 1.2E-24 172.6 30.1 319 287-632 41-381 (504)
40 KOG1174|consensus 99.9 1.6E-19 3.4E-24 173.7 33.7 322 319-672 191-517 (564)
41 PF13429 TPR_15: Tetratricopep 99.9 1.4E-22 3E-27 203.0 13.0 261 361-654 12-276 (280)
42 PLN03218 maturation of RBCL 1; 99.9 4.3E-18 9.4E-23 194.3 47.7 327 298-656 446-784 (1060)
43 PLN03081 pentatricopeptide (PP 99.9 2.4E-18 5.2E-23 194.5 42.1 318 301-655 236-557 (697)
44 PLN03077 Protein ECB2; Provisi 99.9 6.8E-19 1.5E-23 203.8 37.9 335 299-676 333-707 (857)
45 PLN03218 maturation of RBCL 1; 99.9 1.2E-17 2.6E-22 190.7 46.3 343 299-676 416-770 (1060)
46 KOG1174|consensus 99.9 6.6E-18 1.4E-22 162.6 37.0 309 299-639 206-518 (564)
47 TIGR00540 hemY_coli hemY prote 99.9 1.8E-18 4E-23 182.1 36.5 296 329-654 89-398 (409)
48 PLN03081 pentatricopeptide (PP 99.9 1.4E-18 3E-23 196.4 37.5 341 299-676 199-544 (697)
49 PF13429 TPR_15: Tetratricopep 99.9 4.3E-21 9.2E-26 192.2 14.9 257 385-676 4-264 (280)
50 TIGR00540 hemY_coli hemY prote 99.9 4.9E-18 1.1E-22 178.8 37.9 298 293-621 88-399 (409)
51 KOG0548|consensus 99.9 1.2E-18 2.6E-23 174.1 31.0 336 328-674 6-440 (539)
52 PRK12370 invasion protein regu 99.9 2.2E-19 4.9E-24 196.0 28.6 251 372-656 276-536 (553)
53 KOG4162|consensus 99.8 5.3E-18 1.2E-22 175.8 34.9 373 281-676 316-770 (799)
54 PRK12370 invasion protein regu 99.8 8.9E-19 1.9E-23 191.4 31.0 261 326-621 260-535 (553)
55 PLN03077 Protein ECB2; Provisi 99.8 1.3E-17 2.7E-22 193.3 41.9 317 299-655 399-720 (857)
56 KOG4162|consensus 99.8 1.3E-17 2.9E-22 172.9 37.2 344 295-661 363-789 (799)
57 PRK10747 putative protoheme IX 99.8 2E-17 4.2E-22 173.3 37.1 293 329-656 89-391 (398)
58 PRK10747 putative protoheme IX 99.8 2.7E-17 5.9E-22 172.2 37.2 293 294-622 89-391 (398)
59 KOG1125|consensus 99.8 3.7E-19 8.1E-24 179.2 21.9 247 328-584 289-553 (579)
60 KOG1125|consensus 99.8 2.5E-19 5.5E-24 180.4 20.5 259 359-646 287-562 (579)
61 PRK11189 lipoprotein NlpI; Pro 99.8 1.6E-18 3.5E-23 173.7 26.4 122 371-492 40-165 (296)
62 PRK11189 lipoprotein NlpI; Pro 99.8 7.4E-18 1.6E-22 169.0 28.4 155 333-488 35-194 (296)
63 KOG1127|consensus 99.8 1.2E-17 2.6E-22 176.8 26.4 349 302-676 471-900 (1238)
64 TIGR02521 type_IV_pilW type IV 99.8 5.4E-17 1.2E-21 158.0 27.2 203 391-656 31-233 (234)
65 KOG1156|consensus 99.8 3.6E-16 7.9E-21 159.3 33.5 367 299-676 17-455 (700)
66 TIGR02521 type_IV_pilW type IV 99.8 5.7E-17 1.2E-21 157.9 27.0 200 356-565 30-231 (234)
67 KOG0550|consensus 99.8 3.2E-17 6.8E-22 158.4 24.0 342 298-652 58-440 (486)
68 COG3063 PilF Tfp pilus assembl 99.8 7.1E-17 1.5E-21 144.9 24.1 207 392-628 36-243 (250)
69 COG3063 PilF Tfp pilus assembl 99.8 1.5E-16 3.3E-21 142.8 24.4 208 425-663 35-244 (250)
70 PLN02789 farnesyltranstransfer 99.8 2.1E-16 4.4E-21 157.8 27.8 234 400-664 46-311 (320)
71 KOG0550|consensus 99.8 3.7E-17 8E-22 157.9 19.1 255 328-584 53-332 (486)
72 COG2956 Predicted N-acetylgluc 99.8 4.9E-15 1.1E-19 139.0 32.2 273 296-581 42-324 (389)
73 PLN02789 farnesyltranstransfer 99.8 7.9E-16 1.7E-20 153.6 28.2 263 338-630 34-311 (320)
74 KOG1127|consensus 99.7 5.4E-16 1.2E-20 164.4 27.1 344 291-657 494-915 (1238)
75 COG2956 Predicted N-acetylgluc 99.7 7.4E-15 1.6E-19 137.9 31.0 293 328-654 39-346 (389)
76 KOG1840|consensus 99.7 2.1E-15 4.6E-20 156.8 29.7 241 387-654 195-478 (508)
77 cd05804 StaR_like StaR_like; a 99.7 3.5E-14 7.7E-19 147.9 35.3 306 322-656 4-337 (355)
78 KOG1156|consensus 99.7 9.9E-14 2.1E-18 141.8 35.6 342 291-656 43-469 (700)
79 KOG1840|consensus 99.7 5.2E-15 1.1E-19 153.9 26.5 237 321-565 196-478 (508)
80 KOG2376|consensus 99.7 7.2E-13 1.6E-17 134.2 39.2 406 124-672 20-504 (652)
81 cd05804 StaR_like StaR_like; a 99.7 1.9E-13 4.1E-18 142.4 33.3 307 290-622 7-337 (355)
82 KOG1915|consensus 99.7 3E-12 6.5E-17 126.1 36.9 330 301-656 119-501 (677)
83 KOG3785|consensus 99.6 2.2E-13 4.8E-18 129.2 27.0 250 290-558 58-337 (557)
84 KOG1915|consensus 99.6 8E-12 1.7E-16 123.1 38.1 349 288-669 138-549 (677)
85 PRK15359 type III secretion sy 99.6 1.5E-14 3.2E-19 128.1 15.0 128 523-674 13-140 (144)
86 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 120.1 34.9 290 296-621 91-390 (400)
87 KOG2376|consensus 99.6 2.8E-11 6E-16 122.9 38.3 456 1-584 1-503 (652)
88 TIGR03302 OM_YfiO outer membra 99.6 3E-13 6.4E-18 131.9 22.7 104 389-492 31-148 (235)
89 KOG3785|consensus 99.6 2.5E-12 5.5E-17 122.1 27.6 331 295-659 97-494 (557)
90 TIGR03302 OM_YfiO outer membra 99.6 3.9E-13 8.5E-18 131.0 21.4 188 322-534 31-234 (235)
91 PF12569 NARP1: NMDA receptor- 99.6 5.1E-11 1.1E-15 126.0 37.9 132 393-532 196-334 (517)
92 PRK15359 type III secretion sy 99.5 1.9E-13 4.1E-18 121.0 15.5 122 346-469 15-136 (144)
93 KOG1130|consensus 99.5 3.9E-13 8.5E-18 129.9 16.8 306 329-675 22-370 (639)
94 KOG1130|consensus 99.5 3.9E-13 8.4E-18 130.0 16.8 313 291-644 19-373 (639)
95 PF12569 NARP1: NMDA receptor- 99.5 4.9E-11 1.1E-15 126.1 34.0 297 328-656 8-335 (517)
96 COG3071 HemY Uncharacterized e 99.5 5.8E-10 1.3E-14 108.7 37.7 293 329-655 89-390 (400)
97 KOG1128|consensus 99.5 3.2E-12 6.9E-17 132.7 22.9 235 321-579 395-629 (777)
98 PRK14720 transcript cleavage f 99.5 3.9E-12 8.4E-17 140.0 25.1 239 356-638 30-269 (906)
99 PRK10370 formate-dependent nit 99.5 1.5E-12 3.3E-17 121.5 18.8 126 515-661 51-179 (198)
100 KOG3060|consensus 99.5 1.3E-11 2.9E-16 112.6 23.4 186 357-549 52-237 (289)
101 KOG4340|consensus 99.5 7.1E-12 1.5E-16 116.5 21.8 363 291-669 46-457 (459)
102 PRK10370 formate-dependent nit 99.5 3.4E-12 7.3E-17 119.3 19.6 123 370-492 52-177 (198)
103 KOG3060|consensus 99.5 2.4E-11 5.3E-16 110.9 23.5 202 302-505 25-235 (289)
104 PRK04841 transcriptional regul 99.5 1.5E-10 3.2E-15 136.2 37.0 334 298-660 383-765 (903)
105 PRK14720 transcript cleavage f 99.5 1E-11 2.2E-16 136.7 24.4 179 282-492 24-202 (906)
106 COG5010 TadD Flp pilus assembl 99.5 1.3E-11 2.7E-16 114.1 20.3 168 382-560 58-225 (257)
107 COG5010 TadD Flp pilus assembl 99.4 8.3E-12 1.8E-16 115.3 18.8 182 440-653 48-229 (257)
108 KOG1128|consensus 99.4 7.6E-12 1.6E-16 130.0 19.8 217 393-655 400-616 (777)
109 PRK15179 Vi polysaccharide bio 99.4 3.4E-11 7.5E-16 132.1 25.8 161 332-492 57-221 (694)
110 PRK15179 Vi polysaccharide bio 99.4 1.9E-11 4.2E-16 134.0 22.4 136 495-659 86-221 (694)
111 TIGR02552 LcrH_SycD type III s 99.4 1.2E-11 2.6E-16 109.0 15.6 119 524-663 4-122 (135)
112 PRK04841 transcriptional regul 99.4 1.4E-09 3.1E-14 127.9 37.8 348 299-675 351-746 (903)
113 KOG4340|consensus 99.4 8E-11 1.7E-15 109.6 20.6 313 299-649 20-333 (459)
114 PF04733 Coatomer_E: Coatomer 99.4 1.3E-11 2.8E-16 122.0 16.0 260 331-628 8-272 (290)
115 KOG2047|consensus 99.4 7.2E-09 1.6E-13 106.4 35.7 296 335-656 358-688 (835)
116 PF04733 Coatomer_E: Coatomer 99.4 1.4E-11 3E-16 121.7 15.6 256 299-574 11-271 (290)
117 KOG0553|consensus 99.4 1E-11 2.2E-16 116.8 13.3 110 542-672 86-195 (304)
118 KOG2047|consensus 99.3 8.8E-08 1.9E-12 98.6 41.7 327 291-648 349-716 (835)
119 TIGR02552 LcrH_SycD type III s 99.3 3.7E-11 8.1E-16 105.9 15.0 115 378-492 4-118 (135)
120 PRK15363 pathogenicity island 99.3 5.8E-11 1.3E-15 102.6 15.1 107 530-657 27-134 (157)
121 KOG0553|consensus 99.3 4.3E-11 9.4E-16 112.6 14.3 131 495-654 81-214 (304)
122 PRK15363 pathogenicity island 99.3 2E-10 4.4E-15 99.3 15.3 107 383-489 26-133 (157)
123 COG4783 Putative Zn-dependent 99.3 2.3E-09 5E-14 107.5 24.2 154 422-623 303-456 (484)
124 COG4783 Putative Zn-dependent 99.2 6.1E-09 1.3E-13 104.5 23.8 124 356-479 305-428 (484)
125 PLN03088 SGT1, suppressor of 99.2 6.6E-10 1.4E-14 114.1 15.7 112 540-672 5-116 (356)
126 PLN03088 SGT1, suppressor of 99.1 2.1E-09 4.6E-14 110.4 16.1 113 360-472 5-117 (356)
127 PF13525 YfiO: Outer membrane 99.1 2E-08 4.3E-13 94.7 19.9 157 323-479 4-198 (203)
128 PRK10866 outer membrane biogen 99.0 6E-08 1.3E-12 93.6 22.5 181 323-528 31-237 (243)
129 COG4785 NlpI Lipoprotein NlpI, 99.0 1.2E-07 2.7E-12 84.7 20.8 194 356-565 64-265 (297)
130 KOG1941|consensus 99.0 1.4E-07 3E-12 90.7 22.0 241 392-654 84-359 (518)
131 PRK10866 outer membrane biogen 99.0 1.9E-07 4.2E-12 90.1 23.6 191 424-652 31-238 (243)
132 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.4E-08 3E-13 87.1 13.9 107 537-664 2-114 (119)
133 PF13525 YfiO: Outer membrane 99.0 4.7E-08 1E-12 92.2 18.6 159 356-522 4-197 (203)
134 COG0457 NrfG FOG: TPR repeat [ 99.0 2.7E-06 5.9E-11 82.3 31.8 225 371-658 37-268 (291)
135 CHL00033 ycf3 photosystem I as 99.0 2.8E-08 6E-13 91.0 16.1 126 516-660 12-154 (168)
136 PRK02603 photosystem I assembl 99.0 1.8E-08 3.9E-13 92.5 14.8 119 534-674 32-165 (172)
137 PF13414 TPR_11: TPR repeat; P 98.9 3.1E-09 6.6E-14 81.1 7.7 67 572-657 2-69 (69)
138 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.1E-08 4.5E-13 86.0 13.9 100 359-458 4-109 (119)
139 COG4235 Cytochrome c biogenesi 98.9 2.7E-08 6E-13 94.8 15.7 127 517-661 136-262 (287)
140 KOG1070|consensus 98.9 2.9E-07 6.4E-12 102.5 25.7 235 341-584 1441-1681(1710)
141 COG0457 NrfG FOG: TPR repeat [ 98.9 5.3E-06 1.1E-10 80.3 32.5 219 337-565 36-264 (291)
142 COG4235 Cytochrome c biogenesi 98.9 5.5E-08 1.2E-12 92.8 17.2 120 373-492 138-260 (287)
143 KOG2471|consensus 98.9 2.3E-07 5E-12 92.5 21.7 113 291-403 242-381 (696)
144 KOG1941|consensus 98.9 4.2E-07 9.2E-12 87.5 22.6 297 296-619 13-358 (518)
145 COG4785 NlpI Lipoprotein NlpI, 98.9 7.8E-08 1.7E-12 86.0 16.4 198 391-622 65-267 (297)
146 PRK02603 photosystem I assembl 98.9 3.9E-08 8.4E-13 90.3 15.4 99 458-564 34-133 (172)
147 KOG3617|consensus 98.9 1.2E-06 2.5E-11 92.7 27.5 281 328-652 804-1171(1416)
148 KOG1070|consensus 98.9 2.1E-07 4.6E-12 103.6 22.9 220 407-656 1440-1664(1710)
149 cd00189 TPR Tetratricopeptide 98.9 1.8E-08 3.9E-13 82.0 11.5 99 539-658 2-100 (100)
150 KOG2471|consensus 98.9 3.2E-06 6.8E-11 84.7 28.6 122 539-677 511-672 (696)
151 KOG3081|consensus 98.9 1.2E-06 2.5E-11 81.4 23.9 260 331-627 15-277 (299)
152 PF14938 SNAP: Soluble NSF att 98.9 9E-08 2E-12 95.4 18.2 214 339-576 30-274 (282)
153 PF09976 TPR_21: Tetratricopep 98.9 1.1E-07 2.3E-12 84.6 16.5 117 369-486 23-145 (145)
154 PRK15331 chaperone protein Sic 98.9 3.6E-08 7.9E-13 85.8 12.8 112 531-664 31-142 (165)
155 CHL00033 ycf3 photosystem I as 98.9 5.6E-08 1.2E-12 89.0 14.6 97 340-436 15-117 (168)
156 PRK10153 DNA-binding transcrip 98.9 9.7E-08 2.1E-12 102.1 18.5 126 516-661 355-488 (517)
157 cd00189 TPR Tetratricopeptide 98.9 2.7E-08 5.9E-13 81.0 11.3 97 394-490 3-99 (100)
158 COG3898 Uncharacterized membra 98.9 1.6E-05 3.5E-10 77.7 31.2 292 296-621 91-392 (531)
159 PF13414 TPR_11: TPR repeat; P 98.8 1.8E-08 4E-13 76.7 8.3 65 358-422 4-69 (69)
160 PF13432 TPR_16: Tetratricopep 98.8 1.8E-08 4E-13 75.7 8.1 57 604-660 9-65 (65)
161 PF09976 TPR_21: Tetratricopep 98.8 2.2E-07 4.7E-12 82.6 16.1 119 437-564 23-145 (145)
162 KOG3081|consensus 98.8 1.7E-06 3.6E-11 80.4 21.7 255 365-661 16-277 (299)
163 KOG2053|consensus 98.8 0.0002 4.3E-09 77.5 39.7 224 301-536 21-259 (932)
164 PRK11906 transcriptional regul 98.8 4.8E-07 1E-11 91.8 19.3 160 327-486 258-434 (458)
165 PRK11906 transcriptional regul 98.8 3.2E-07 6.9E-12 93.0 17.6 118 516-654 317-435 (458)
166 PF12895 Apc3: Anaphase-promot 98.8 1.6E-08 3.5E-13 80.4 6.6 80 404-484 2-83 (84)
167 PF14938 SNAP: Soluble NSF att 98.8 4.4E-07 9.5E-12 90.5 18.0 167 466-660 42-230 (282)
168 PF12895 Apc3: Anaphase-promot 98.8 3E-08 6.4E-13 78.9 7.7 79 551-651 3-83 (84)
169 PF13432 TPR_16: Tetratricopep 98.7 4.5E-08 9.7E-13 73.5 8.0 63 362-424 2-64 (65)
170 KOG0543|consensus 98.7 1.5E-07 3.2E-12 93.0 13.5 109 328-436 212-336 (397)
171 PRK10153 DNA-binding transcrip 98.7 4.6E-07 1E-11 97.0 18.5 119 373-492 358-486 (517)
172 PRK15331 chaperone protein Sic 98.7 1.9E-07 4.1E-12 81.4 12.3 100 388-487 34-133 (165)
173 KOG3617|consensus 98.7 7.8E-06 1.7E-10 86.7 26.2 313 299-652 738-1106(1416)
174 KOG4648|consensus 98.7 6.2E-09 1.3E-13 99.0 3.1 100 328-427 101-201 (536)
175 KOG0543|consensus 98.7 7E-07 1.5E-11 88.3 17.2 98 539-657 259-357 (397)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.6E-07 1.2E-11 92.0 15.7 116 332-449 177-292 (395)
177 PRK10803 tol-pal system protei 98.7 7.9E-07 1.7E-11 86.5 16.0 88 371-458 157-250 (263)
178 PRK10803 tol-pal system protei 98.7 7.9E-07 1.7E-11 86.5 16.0 108 536-664 141-255 (263)
179 COG3898 Uncharacterized membra 98.7 0.00053 1.2E-08 67.4 34.5 290 328-654 88-391 (531)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 7.7E-07 1.7E-11 91.0 16.0 125 359-486 171-295 (395)
181 PF12688 TPR_5: Tetratrico pep 98.6 8.5E-07 1.8E-11 74.6 13.2 97 461-565 3-103 (120)
182 KOG2053|consensus 98.6 0.00016 3.4E-09 78.3 32.0 226 335-572 20-259 (932)
183 PF14559 TPR_19: Tetratricopep 98.6 1.2E-07 2.5E-12 72.0 6.4 66 604-669 3-68 (68)
184 PF12688 TPR_5: Tetratrico pep 98.6 1.5E-06 3.2E-11 73.1 13.2 91 328-418 5-102 (120)
185 KOG4648|consensus 98.6 3.4E-08 7.3E-13 94.1 3.6 188 295-492 103-300 (536)
186 COG4700 Uncharacterized protei 98.5 1E-05 2.3E-10 70.9 17.6 155 467-654 64-221 (251)
187 PF13371 TPR_9: Tetratricopept 98.5 6.4E-07 1.4E-11 69.0 8.5 67 602-668 5-71 (73)
188 COG4105 ComL DNA uptake lipopr 98.5 4.5E-05 9.8E-10 71.5 21.7 165 327-491 37-236 (254)
189 KOG2796|consensus 98.5 0.00022 4.7E-09 66.3 25.3 126 515-659 189-319 (366)
190 COG4700 Uncharacterized protei 98.5 2.1E-05 4.6E-10 69.0 17.9 146 303-451 70-219 (251)
191 PF13512 TPR_18: Tetratricopep 98.5 5E-06 1.1E-10 71.0 13.1 86 321-406 7-99 (142)
192 KOG4234|consensus 98.4 2.3E-06 5.1E-11 75.7 11.2 104 543-667 101-209 (271)
193 COG4105 ComL DNA uptake lipopr 98.4 0.0001 2.3E-09 69.1 22.6 174 356-537 33-238 (254)
194 PF14559 TPR_19: Tetratricopep 98.4 6.1E-07 1.3E-11 68.0 6.7 52 371-422 5-56 (68)
195 COG1729 Uncharacterized protei 98.4 5.7E-06 1.2E-10 78.2 14.4 100 328-427 145-251 (262)
196 KOG4234|consensus 98.4 2.7E-06 5.9E-11 75.3 11.2 105 329-433 100-210 (271)
197 KOG2796|consensus 98.4 0.0001 2.2E-09 68.4 20.8 161 341-506 166-334 (366)
198 PF13371 TPR_9: Tetratricopept 98.4 2.2E-06 4.8E-11 66.0 8.4 63 365-427 3-65 (73)
199 COG1729 Uncharacterized protei 98.3 1.6E-05 3.6E-10 75.2 14.5 103 360-462 144-252 (262)
200 KOG2300|consensus 98.3 0.0061 1.3E-07 61.9 36.1 155 471-656 287-475 (629)
201 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.8E-06 6.1E-11 86.2 9.4 69 568-655 70-141 (453)
202 PF13512 TPR_18: Tetratricopep 98.2 3.6E-05 7.9E-10 65.8 13.5 84 356-439 9-98 (142)
203 KOG1914|consensus 98.2 0.0095 2.1E-07 61.4 34.7 348 300-674 30-486 (656)
204 PF06552 TOM20_plant: Plant sp 98.2 2.2E-05 4.7E-10 69.2 12.0 100 519-666 7-120 (186)
205 KOG1586|consensus 98.2 0.00018 3.8E-09 65.8 18.0 128 515-661 85-230 (288)
206 KOG4555|consensus 98.2 4.2E-05 9E-10 63.0 12.0 99 540-659 46-148 (175)
207 KOG2610|consensus 98.1 0.0019 4.1E-08 62.3 23.9 160 363-530 109-274 (491)
208 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1E-05 2.2E-10 82.2 9.3 69 532-621 70-141 (453)
209 PF13424 TPR_12: Tetratricopep 98.1 6.9E-06 1.5E-10 64.1 6.4 69 534-621 2-75 (78)
210 PF13424 TPR_12: Tetratricopep 98.1 5.4E-06 1.2E-10 64.8 5.6 68 570-656 2-76 (78)
211 KOG4555|consensus 98.1 0.00011 2.4E-09 60.5 13.1 97 360-456 46-146 (175)
212 KOG1586|consensus 98.1 0.00073 1.6E-08 61.9 18.9 177 302-492 27-228 (288)
213 PF13428 TPR_14: Tetratricopep 98.1 1.1E-05 2.4E-10 54.7 5.6 43 626-668 1-43 (44)
214 PF06552 TOM20_plant: Plant sp 98.1 3.2E-05 6.9E-10 68.2 9.8 67 373-439 7-83 (186)
215 PF04184 ST7: ST7 protein; In 98.0 0.0013 2.8E-08 67.3 21.9 186 369-577 180-384 (539)
216 PF04184 ST7: ST7 protein; In 98.0 0.0012 2.5E-08 67.6 21.4 239 403-670 180-429 (539)
217 KOG1585|consensus 98.0 0.0014 3.1E-08 60.4 19.8 203 357-616 31-251 (308)
218 KOG2300|consensus 98.0 0.025 5.4E-07 57.6 33.1 321 329-675 12-419 (629)
219 KOG3616|consensus 98.0 0.002 4.3E-08 68.2 23.2 167 298-482 670-847 (1636)
220 KOG1258|consensus 98.0 0.032 6.8E-07 58.8 35.3 345 299-674 89-489 (577)
221 KOG0985|consensus 98.0 0.027 5.8E-07 62.3 31.9 152 328-491 988-1165(1666)
222 KOG4507|consensus 98.0 0.00051 1.1E-08 70.8 17.5 105 546-671 616-721 (886)
223 KOG1550|consensus 97.9 0.011 2.3E-07 65.0 28.5 173 304-485 227-423 (552)
224 KOG2610|consensus 97.9 0.0021 4.5E-08 62.1 19.2 168 396-573 108-283 (491)
225 PF05843 Suf: Suppressor of fo 97.9 0.00024 5.2E-09 70.6 13.9 133 360-492 4-140 (280)
226 KOG0985|consensus 97.9 0.0049 1.1E-07 67.8 24.0 56 357-417 1104-1159(1666)
227 KOG1550|consensus 97.9 0.0073 1.6E-07 66.2 26.4 50 606-658 489-541 (552)
228 PF05843 Suf: Suppressor of fo 97.9 0.00043 9.4E-09 68.7 15.5 137 497-662 3-143 (280)
229 PF07079 DUF1347: Protein of u 97.8 0.05 1.1E-06 55.2 34.4 128 293-420 10-157 (549)
230 PF10300 DUF3808: Protein of u 97.8 0.018 3.9E-07 61.6 27.4 166 468-656 197-377 (468)
231 KOG1585|consensus 97.8 0.0037 8.1E-08 57.8 18.5 192 328-528 35-252 (308)
232 PF02259 FAT: FAT domain; Int 97.7 0.02 4.3E-07 59.4 25.7 54 606-659 272-342 (352)
233 PF13431 TPR_17: Tetratricopep 97.7 3.1E-05 6.8E-10 48.8 2.8 33 614-646 1-33 (34)
234 PF13428 TPR_14: Tetratricopep 97.7 8.7E-05 1.9E-09 50.3 5.1 37 395-431 5-41 (44)
235 KOG4642|consensus 97.7 0.00011 2.4E-09 67.4 7.1 94 361-454 14-107 (284)
236 KOG3616|consensus 97.7 0.015 3.2E-07 61.9 22.9 253 363-653 621-909 (1636)
237 PF10345 Cohesin_load: Cohesin 97.6 0.17 3.7E-06 56.5 35.8 294 340-650 37-428 (608)
238 KOG1914|consensus 97.6 0.11 2.3E-06 54.0 34.2 327 300-657 64-503 (656)
239 KOG4642|consensus 97.6 0.0001 2.3E-09 67.5 6.3 116 512-648 19-139 (284)
240 PF10345 Cohesin_load: Cohesin 97.6 0.18 3.9E-06 56.3 35.3 319 305-644 37-467 (608)
241 PF13281 DUF4071: Domain of un 97.6 0.0071 1.5E-07 61.2 19.5 181 356-574 140-340 (374)
242 PF02259 FAT: FAT domain; Int 97.6 0.038 8.2E-07 57.3 26.2 305 297-624 6-341 (352)
243 PF00515 TPR_1: Tetratricopept 97.6 0.00013 2.8E-09 46.2 4.6 34 626-659 1-34 (34)
244 PF07719 TPR_2: Tetratricopept 97.6 0.00017 3.8E-09 45.6 5.1 34 626-659 1-34 (34)
245 KOG0530|consensus 97.5 0.032 7E-07 52.4 21.0 192 338-549 40-233 (318)
246 PF13431 TPR_17: Tetratricopep 97.5 8.9E-05 1.9E-09 46.8 3.0 34 525-558 1-34 (34)
247 KOG0376|consensus 97.5 0.00018 3.9E-09 73.1 6.5 100 513-633 14-113 (476)
248 KOG0530|consensus 97.5 0.041 9E-07 51.7 21.1 189 298-486 52-251 (318)
249 KOG0376|consensus 97.5 0.00021 4.5E-09 72.6 6.1 108 362-469 9-116 (476)
250 KOG0545|consensus 97.5 0.0014 3E-08 60.5 10.7 106 538-662 179-300 (329)
251 PF08631 SPO22: Meiosis protei 97.4 0.16 3.5E-06 50.4 28.0 63 427-489 86-151 (278)
252 COG3118 Thioredoxin domain-con 97.4 0.021 4.6E-07 54.9 18.5 151 328-479 138-292 (304)
253 KOG4507|consensus 97.4 0.016 3.6E-07 60.2 18.8 102 515-637 619-721 (886)
254 PF13281 DUF4071: Domain of un 97.4 0.044 9.5E-07 55.6 21.3 177 328-537 145-339 (374)
255 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00036 7.9E-09 48.7 4.6 39 15-53 5-43 (53)
256 KOG1258|consensus 97.4 0.28 6.1E-06 51.9 34.0 117 305-422 61-182 (577)
257 KOG0545|consensus 97.3 0.0048 1E-07 57.0 12.7 100 393-492 180-297 (329)
258 COG3118 Thioredoxin domain-con 97.3 0.015 3.2E-07 55.9 16.1 148 358-506 135-283 (304)
259 PF08631 SPO22: Meiosis protei 97.3 0.23 4.9E-06 49.4 26.4 27 539-565 248-274 (278)
260 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.00052 1.1E-08 48.0 4.7 40 120-159 5-44 (53)
261 KOG0890|consensus 97.3 0.35 7.5E-06 59.2 29.9 130 519-671 1645-1800(2382)
262 PF00515 TPR_1: Tetratricopept 97.2 0.00073 1.6E-08 42.7 4.4 32 460-491 2-33 (34)
263 PF07079 DUF1347: Protein of u 97.2 0.36 7.8E-06 49.3 31.1 50 602-652 472-521 (549)
264 PF10300 DUF3808: Protein of u 97.2 0.0072 1.6E-07 64.6 14.3 115 302-417 246-373 (468)
265 KOG2041|consensus 97.2 0.061 1.3E-06 57.2 20.1 182 350-563 685-878 (1189)
266 PF07719 TPR_2: Tetratricopept 97.1 0.0013 2.9E-08 41.4 4.8 32 460-491 2-33 (34)
267 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.43 9.4E-06 48.6 30.1 175 447-654 290-494 (660)
268 KOG0890|consensus 97.1 0.35 7.6E-06 59.1 27.6 301 329-656 1388-1732(2382)
269 KOG0551|consensus 97.0 0.02 4.3E-07 55.6 14.1 98 460-565 82-181 (390)
270 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.8E-08 41.5 4.3 33 627-659 2-34 (34)
271 COG0790 FOG: TPR repeat, SEL1 97.0 0.45 9.7E-06 47.8 25.5 192 439-662 55-273 (292)
272 PF03704 BTAD: Bacterial trans 97.0 0.016 3.5E-07 51.4 13.0 57 429-485 66-122 (146)
273 COG0790 FOG: TPR repeat, SEL1 97.0 0.092 2E-06 52.8 20.1 177 470-674 52-236 (292)
274 COG2909 MalT ATP-dependent tra 97.0 0.85 1.8E-05 50.7 30.4 235 390-651 414-684 (894)
275 PF03704 BTAD: Bacterial trans 97.0 0.021 4.5E-07 50.6 13.5 93 361-453 10-124 (146)
276 PRK13184 pknD serine/threonine 97.0 0.29 6.2E-06 56.2 25.0 95 299-393 485-588 (932)
277 COG2976 Uncharacterized protei 96.9 0.05 1.1E-06 49.0 14.7 119 522-660 71-193 (207)
278 COG2976 Uncharacterized protei 96.9 0.025 5.5E-07 50.8 12.5 99 358-457 90-191 (207)
279 KOG0551|consensus 96.9 0.0066 1.4E-07 58.8 9.4 101 538-659 82-186 (390)
280 PF08424 NRDE-2: NRDE-2, neces 96.8 0.12 2.6E-06 52.5 18.6 147 380-534 8-185 (321)
281 KOG1308|consensus 96.7 0.002 4.3E-08 62.6 4.6 92 364-455 121-212 (377)
282 KOG3824|consensus 96.7 0.0064 1.4E-07 58.0 7.6 66 604-669 128-193 (472)
283 PF08424 NRDE-2: NRDE-2, neces 96.6 0.065 1.4E-06 54.4 15.5 80 476-565 48-130 (321)
284 KOG1308|consensus 96.5 0.0013 2.8E-08 63.9 2.2 87 515-622 126-212 (377)
285 PF13174 TPR_6: Tetratricopept 96.5 0.0056 1.2E-07 38.1 4.4 33 627-659 1-33 (33)
286 PF13176 TPR_7: Tetratricopept 96.5 0.0067 1.4E-07 38.8 4.5 34 539-572 1-34 (36)
287 PF13176 TPR_7: Tetratricopept 96.4 0.0033 7.1E-08 40.3 2.8 29 628-656 1-29 (36)
288 COG2909 MalT ATP-dependent tra 96.3 2.4 5.2E-05 47.3 30.9 229 328-564 419-686 (894)
289 PF13181 TPR_8: Tetratricopept 96.3 0.0091 2E-07 37.5 4.6 32 460-491 2-33 (34)
290 PF04910 Tcf25: Transcriptiona 96.2 0.2 4.4E-06 51.5 15.9 94 464-565 108-221 (360)
291 PF04910 Tcf25: Transcriptiona 96.2 0.25 5.5E-06 50.8 16.6 140 352-491 34-225 (360)
292 PF09613 HrpB1_HrpK: Bacterial 96.1 0.1 2.2E-06 45.9 11.1 72 604-675 22-93 (160)
293 COG5107 RNA14 Pre-mRNA 3'-end 96.0 2 4.3E-05 44.0 21.1 241 346-624 290-534 (660)
294 PRK15180 Vi polysaccharide bio 96.0 0.071 1.5E-06 54.3 11.0 123 370-492 302-424 (831)
295 PRK10941 hypothetical protein; 95.9 0.088 1.9E-06 51.4 11.3 67 604-670 193-259 (269)
296 PF13174 TPR_6: Tetratricopept 95.9 0.014 3E-07 36.3 3.8 29 360-388 3-31 (33)
297 PF09613 HrpB1_HrpK: Bacterial 95.7 0.17 3.8E-06 44.4 11.2 81 360-440 13-93 (160)
298 KOG1538|consensus 95.5 2.1 4.5E-05 45.8 19.7 89 455-564 743-831 (1081)
299 PF04781 DUF627: Protein of un 95.5 0.1 2.3E-06 42.5 8.3 44 410-453 63-106 (111)
300 PRK13184 pknD serine/threonine 95.5 3.6 7.8E-05 47.6 23.4 97 329-426 480-587 (932)
301 PF12968 DUF3856: Domain of Un 95.4 0.39 8.4E-06 39.5 11.1 27 540-566 103-129 (144)
302 smart00028 TPR Tetratricopepti 95.4 0.029 6.4E-07 34.1 4.1 33 627-659 2-34 (34)
303 KOG3783|consensus 95.3 1.5 3.3E-05 46.0 17.9 236 306-565 250-519 (546)
304 PF12968 DUF3856: Domain of Un 95.3 0.94 2E-05 37.3 12.9 26 629-654 103-128 (144)
305 PF14561 TPR_20: Tetratricopep 95.3 0.1 2.2E-06 41.5 7.5 65 611-675 7-73 (90)
306 COG3914 Spy Predicted O-linked 95.3 0.56 1.2E-05 49.6 14.7 136 517-673 45-189 (620)
307 KOG2396|consensus 95.2 4.8 0.0001 42.0 32.5 94 305-399 87-182 (568)
308 PF14561 TPR_20: Tetratricopep 95.1 0.23 4.9E-06 39.5 9.1 44 379-422 10-53 (90)
309 KOG1464|consensus 95.1 1.8 3.9E-05 41.2 16.1 189 302-490 40-262 (440)
310 COG4649 Uncharacterized protei 95.1 0.88 1.9E-05 40.3 13.1 132 302-434 71-209 (221)
311 PRK15180 Vi polysaccharide bio 95.0 5.3 0.00012 41.3 23.7 47 611-657 761-807 (831)
312 COG4976 Predicted methyltransf 94.9 0.049 1.1E-06 50.1 5.3 59 603-661 6-64 (287)
313 KOG2041|consensus 94.9 7 0.00015 42.4 23.8 26 357-382 796-821 (1189)
314 KOG3824|consensus 94.9 0.097 2.1E-06 50.3 7.3 68 331-398 123-191 (472)
315 KOG2581|consensus 94.8 2.4 5.2E-05 42.8 16.9 121 538-677 170-304 (493)
316 KOG3783|consensus 94.8 6.6 0.00014 41.5 25.5 243 374-659 250-524 (546)
317 PRK10941 hypothetical protein; 94.8 0.35 7.6E-06 47.3 11.2 68 361-428 185-252 (269)
318 TIGR02561 HrpB1_HrpK type III 94.7 0.41 8.9E-06 41.3 10.0 72 604-675 22-93 (153)
319 KOG1464|consensus 94.6 4.4 9.6E-05 38.6 21.9 192 337-532 40-260 (440)
320 TIGR02561 HrpB1_HrpK type III 94.6 1.6 3.5E-05 37.8 13.2 81 361-441 14-94 (153)
321 PF09986 DUF2225: Uncharacteri 94.4 0.81 1.7E-05 43.2 12.3 42 627-668 166-208 (214)
322 COG1747 Uncharacterized N-term 94.3 7.9 0.00017 40.6 22.8 73 412-487 87-159 (711)
323 KOG3364|consensus 94.3 0.77 1.7E-05 38.8 10.5 73 325-397 33-111 (149)
324 KOG4014|consensus 94.2 3.9 8.5E-05 36.6 16.5 185 458-656 33-234 (248)
325 KOG3364|consensus 94.0 0.94 2E-05 38.3 10.4 74 537-630 32-109 (149)
326 PF04781 DUF627: Protein of un 94.0 0.48 1E-05 38.7 8.5 103 363-488 2-107 (111)
327 PF10602 RPN7: 26S proteasome 93.9 1.4 3.1E-05 40.2 12.8 61 358-418 37-100 (177)
328 PRK11619 lytic murein transgly 93.9 13 0.00029 41.6 31.1 248 369-654 111-374 (644)
329 KOG0128|consensus 93.9 13 0.00028 41.4 31.6 328 299-655 123-526 (881)
330 smart00028 TPR Tetratricopepti 93.6 0.11 2.4E-06 31.3 3.6 31 461-491 3-33 (34)
331 KOG1538|consensus 93.5 1.2 2.6E-05 47.5 12.6 84 391-485 747-830 (1081)
332 PF10602 RPN7: 26S proteasome 93.5 1.1 2.3E-05 41.0 11.1 100 538-656 37-143 (177)
333 COG3914 Spy Predicted O-linked 93.5 3.7 8.1E-05 43.7 16.0 126 343-468 50-185 (620)
334 COG4649 Uncharacterized protei 93.4 5.5 0.00012 35.5 16.8 121 437-565 70-195 (221)
335 KOG2422|consensus 93.3 8.7 0.00019 40.9 18.1 94 430-534 347-450 (665)
336 PF09986 DUF2225: Uncharacteri 93.2 0.84 1.8E-05 43.1 10.3 29 392-420 166-194 (214)
337 PF04190 DUF410: Protein of un 93.0 9.6 0.00021 37.3 20.5 35 454-488 135-170 (260)
338 KOG1463|consensus 93.0 11 0.00023 37.6 22.7 169 428-623 131-318 (411)
339 PF13374 TPR_10: Tetratricopep 92.9 0.24 5.3E-06 32.5 4.6 30 626-655 2-31 (42)
340 PF04053 Coatomer_WDAD: Coatom 92.4 3.9 8.4E-05 43.4 14.9 29 536-564 346-374 (443)
341 KOG0128|consensus 92.3 22 0.00048 39.7 23.9 56 526-583 301-356 (881)
342 PF04053 Coatomer_WDAD: Coatom 92.3 3.6 7.9E-05 43.6 14.6 156 301-485 273-428 (443)
343 KOG4814|consensus 92.2 1.2 2.6E-05 47.5 10.4 94 361-454 358-457 (872)
344 KOG4814|consensus 92.2 1.5 3.2E-05 46.8 11.1 96 462-565 357-456 (872)
345 COG5191 Uncharacterized conser 92.0 0.33 7.2E-06 46.9 5.7 80 568-666 102-182 (435)
346 COG4976 Predicted methyltransf 91.9 0.27 5.9E-06 45.4 4.9 56 403-458 7-62 (287)
347 KOG2581|consensus 91.5 12 0.00026 38.0 16.0 124 300-423 137-279 (493)
348 PF11207 DUF2989: Protein of u 91.3 4.4 9.6E-05 37.3 11.9 53 391-444 141-197 (203)
349 KOG1310|consensus 91.3 0.59 1.3E-05 48.6 7.0 103 356-458 373-478 (758)
350 KOG0529|consensus 91.3 19 0.00042 36.9 17.9 170 374-547 46-239 (421)
351 KOG1310|consensus 91.2 0.96 2.1E-05 47.1 8.3 51 607-657 426-476 (758)
352 KOG1839|consensus 91.1 2.6 5.6E-05 49.2 12.5 132 358-489 933-1087(1236)
353 PF13374 TPR_10: Tetratricopep 91.0 0.53 1.1E-05 30.8 4.5 29 538-566 3-31 (42)
354 COG5159 RPN6 26S proteasome re 90.8 16 0.00035 35.3 21.4 200 329-532 8-235 (421)
355 COG5191 Uncharacterized conser 90.8 0.45 9.8E-06 46.0 5.3 80 384-463 100-180 (435)
356 KOG1839|consensus 90.5 2.9 6.2E-05 48.9 12.1 159 329-487 937-1127(1236)
357 KOG2422|consensus 90.4 21 0.00045 38.2 17.1 49 515-563 354-404 (665)
358 KOG3807|consensus 90.0 21 0.00046 35.3 18.3 24 555-580 380-403 (556)
359 PF14863 Alkyl_sulf_dimr: Alky 89.8 0.41 9E-06 41.5 3.9 49 15-63 74-122 (141)
360 PF07720 TPR_3: Tetratricopept 89.6 1.3 2.7E-05 28.2 5.0 33 627-659 2-36 (36)
361 PF15015 NYD-SP12_N: Spermatog 89.4 4.5 9.7E-05 41.2 11.0 108 362-485 181-288 (569)
362 PF11207 DUF2989: Protein of u 89.2 3.9 8.4E-05 37.6 9.7 77 335-412 117-199 (203)
363 COG2912 Uncharacterized conser 89.1 4.5 9.7E-05 39.1 10.5 64 604-667 193-256 (269)
364 PF14863 Alkyl_sulf_dimr: Alky 89.0 0.66 1.4E-05 40.3 4.6 51 118-168 71-122 (141)
365 PF07721 TPR_4: Tetratricopept 88.7 0.7 1.5E-05 26.8 3.2 24 627-650 2-25 (26)
366 COG1747 Uncharacterized N-term 88.6 36 0.00077 36.0 26.3 90 329-420 71-160 (711)
367 PF12862 Apc5: Anaphase-promot 88.5 3.2 6.9E-05 33.3 8.0 59 515-573 10-77 (94)
368 COG3629 DnrI DNA-binding trans 88.4 4.8 0.0001 39.4 10.4 67 570-655 150-216 (280)
369 KOG2063|consensus 88.0 39 0.00085 38.8 18.5 170 394-565 507-712 (877)
370 PF10516 SHNi-TPR: SHNi-TPR; 87.6 1.3 2.8E-05 28.5 4.1 30 627-656 2-31 (38)
371 PF12862 Apc5: Anaphase-promot 87.6 3 6.6E-05 33.4 7.4 56 604-659 10-74 (94)
372 KOG2396|consensus 87.3 43 0.00092 35.4 32.9 82 277-360 94-177 (568)
373 PF00244 14-3-3: 14-3-3 protei 86.9 28 0.00061 33.5 14.8 46 609-654 143-197 (236)
374 COG3629 DnrI DNA-binding trans 86.5 4.1 8.8E-05 39.9 8.8 62 358-419 154-215 (280)
375 PF13041 PPR_2: PPR repeat fam 86.4 3.2 6.9E-05 28.5 6.0 40 327-366 6-47 (50)
376 KOG3807|consensus 86.4 37 0.00079 33.7 19.4 134 360-506 187-322 (556)
377 COG2912 Uncharacterized conser 86.2 5.3 0.00012 38.6 9.2 65 364-428 188-252 (269)
378 PF12739 TRAPPC-Trs85: ER-Golg 85.6 47 0.001 35.1 17.1 88 537-657 300-401 (414)
379 PF10373 EST1_DNA_bind: Est1 D 85.4 2.8 6.1E-05 41.6 7.5 62 611-672 1-62 (278)
380 PF10579 Rapsyn_N: Rapsyn N-te 84.7 6.4 0.00014 30.0 7.0 59 544-620 13-71 (80)
381 PF15015 NYD-SP12_N: Spermatog 84.2 5.2 0.00011 40.8 8.3 57 359-415 230-286 (569)
382 PF07720 TPR_3: Tetratricopept 84.2 3.5 7.6E-05 26.2 4.8 19 395-413 5-23 (36)
383 PF13041 PPR_2: PPR repeat fam 84.1 5 0.00011 27.5 6.2 39 536-574 2-40 (50)
384 PF07721 TPR_4: Tetratricopept 83.7 1.5 3.2E-05 25.4 2.7 24 538-561 2-25 (26)
385 KOG1463|consensus 83.0 54 0.0012 32.8 22.2 170 462-658 131-319 (411)
386 PF10255 Paf67: RNA polymerase 82.9 29 0.00064 36.1 13.5 59 394-453 125-192 (404)
387 COG4455 ImpE Protein of avirul 82.6 41 0.00088 31.5 12.6 59 513-573 11-69 (273)
388 PF12739 TRAPPC-Trs85: ER-Golg 82.5 58 0.0013 34.5 16.1 93 392-491 301-402 (414)
389 PF10579 Rapsyn_N: Rapsyn N-te 81.8 13 0.00029 28.3 7.8 50 367-416 16-68 (80)
390 COG4941 Predicted RNA polymera 81.7 36 0.00078 33.9 12.7 86 340-425 312-399 (415)
391 KOG4014|consensus 81.6 40 0.00088 30.5 15.8 155 328-488 38-233 (248)
392 smart00386 HAT HAT (Half-A-TPR 81.3 2.4 5.1E-05 25.6 3.3 30 25-54 1-30 (33)
393 KOG2114|consensus 81.1 29 0.00064 38.9 13.1 57 397-454 340-397 (933)
394 PF00244 14-3-3: 14-3-3 protei 80.6 36 0.00078 32.8 12.6 50 553-620 142-197 (236)
395 PF01239 PPTA: Protein prenylt 80.2 2.6 5.6E-05 25.6 3.1 26 30-55 2-27 (31)
396 PF12854 PPR_1: PPR repeat 79.7 4 8.6E-05 25.4 3.9 28 625-652 6-33 (34)
397 PF12854 PPR_1: PPR repeat 79.4 4.1 8.8E-05 25.4 3.8 29 535-563 5-33 (34)
398 PF10516 SHNi-TPR: SHNi-TPR; 78.8 4.4 9.5E-05 26.1 3.8 28 393-420 3-30 (38)
399 smart00386 HAT HAT (Half-A-TPR 78.1 6.1 0.00013 23.7 4.5 29 640-668 1-29 (33)
400 KOG0276|consensus 77.9 37 0.0008 36.6 12.2 100 368-485 648-747 (794)
401 TIGR00756 PPR pentatricopeptid 77.8 4.6 9.9E-05 24.7 3.9 32 539-570 2-33 (35)
402 smart00299 CLH Clathrin heavy 77.4 47 0.001 28.7 14.7 32 405-436 21-52 (140)
403 PF10373 EST1_DNA_bind: Est1 D 77.4 8.1 0.00018 38.2 7.5 62 410-471 1-62 (278)
404 smart00299 CLH Clathrin heavy 77.2 47 0.001 28.7 15.0 49 434-483 16-64 (140)
405 KOG2063|consensus 76.2 1.6E+02 0.0034 34.2 17.6 28 495-530 684-711 (877)
406 TIGR03504 FimV_Cterm FimV C-te 76.2 5.8 0.00013 26.5 4.0 25 630-654 3-27 (44)
407 KOG2114|consensus 75.4 1.5E+02 0.0033 33.6 18.2 28 358-385 369-396 (933)
408 TIGR03504 FimV_Cterm FimV C-te 75.3 5.6 0.00012 26.6 3.7 25 541-565 3-27 (44)
409 PF11817 Foie-gras_1: Foie gra 74.5 87 0.0019 30.4 15.1 81 441-529 154-244 (247)
410 KOG4521|consensus 74.1 1.3E+02 0.0029 35.4 15.9 135 324-476 920-1071(1480)
411 COG4941 Predicted RNA polymera 73.8 1E+02 0.0022 30.9 16.8 182 373-575 212-401 (415)
412 PF13812 PPR_3: Pentatricopept 73.3 8.9 0.00019 23.3 4.3 30 539-568 3-32 (34)
413 KOG4279|consensus 73.3 36 0.00078 37.6 10.9 65 439-506 257-331 (1226)
414 COG4455 ImpE Protein of avirul 73.1 10 0.00022 35.2 6.0 59 602-660 11-69 (273)
415 COG5159 RPN6 26S proteasome re 73.0 97 0.0021 30.3 20.5 198 361-566 7-235 (421)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 72.8 59 0.0013 27.7 11.0 82 517-619 40-126 (126)
417 COG3947 Response regulator con 72.4 1E+02 0.0022 30.3 16.6 59 428-486 282-340 (361)
418 PF04190 DUF410: Protein of un 72.0 1E+02 0.0022 30.1 20.6 70 604-673 153-241 (260)
419 KOG0529|consensus 71.8 1.3E+02 0.0028 31.2 18.2 132 519-671 45-194 (421)
420 COG3947 Response regulator con 71.7 48 0.001 32.5 10.3 51 515-565 291-341 (361)
421 KOG0546|consensus 71.6 7.1 0.00015 39.0 5.0 66 604-669 287-352 (372)
422 PF09670 Cas_Cas02710: CRISPR- 71.4 71 0.0015 33.3 12.7 51 515-565 143-197 (379)
423 PF09670 Cas_Cas02710: CRISPR- 71.1 82 0.0018 32.9 13.1 58 396-453 136-197 (379)
424 PF11817 Foie-gras_1: Foie gra 70.1 24 0.00053 34.2 8.6 59 325-383 179-244 (247)
425 KOG0276|consensus 69.8 70 0.0015 34.7 11.9 80 460-565 615-694 (794)
426 PF01535 PPR: PPR repeat; Int 68.6 8 0.00017 22.9 3.2 28 628-655 2-29 (31)
427 KOG0686|consensus 66.7 1.6E+02 0.0036 30.4 13.9 95 392-486 151-256 (466)
428 PF01535 PPR: PPR repeat; Int 65.0 11 0.00023 22.3 3.3 27 539-565 2-28 (31)
429 PF09797 NatB_MDM20: N-acetylt 65.0 54 0.0012 34.0 10.5 132 352-483 171-310 (365)
430 PRK11619 lytic murein transgly 64.4 2.5E+02 0.0054 31.7 35.7 198 437-653 253-466 (644)
431 PF04097 Nic96: Nup93/Nic96; 63.8 2.5E+02 0.0055 31.5 19.8 21 120-140 115-135 (613)
432 KOG0686|consensus 63.4 1.9E+02 0.0041 30.0 14.1 97 538-653 151-256 (466)
433 KOG4279|consensus 63.3 71 0.0015 35.5 10.7 86 472-559 256-343 (1226)
434 TIGR00756 PPR pentatricopeptid 62.2 17 0.00037 21.9 4.0 28 628-655 2-29 (35)
435 PRK12798 chemotaxis protein; R 62.0 2.1E+02 0.0045 29.9 23.7 213 356-577 111-335 (421)
436 PF10255 Paf67: RNA polymerase 61.7 17 0.00036 37.8 5.7 57 328-384 126-191 (404)
437 PF01239 PPTA: Protein prenylt 60.5 16 0.00035 22.0 3.4 28 135-162 2-29 (31)
438 cd02682 MIT_AAA_Arch MIT: doma 60.5 60 0.0013 24.7 7.0 24 542-565 11-34 (75)
439 COG3014 Uncharacterized protei 59.5 2E+02 0.0044 29.0 13.3 36 625-660 212-247 (449)
440 cd02680 MIT_calpain7_2 MIT: do 58.5 18 0.00039 27.5 4.0 18 604-621 18-35 (75)
441 PF04049 APC8: Anaphase promot 58.3 11 0.00023 33.0 3.2 42 114-160 72-113 (142)
442 PF13812 PPR_3: Pentatricopept 57.3 29 0.00062 20.9 4.3 29 627-655 2-30 (34)
443 KOG0687|consensus 57.1 90 0.002 31.1 9.3 100 356-455 103-211 (393)
444 PF04212 MIT: MIT (microtubule 57.0 25 0.00055 26.1 4.7 17 604-620 17-33 (69)
445 KOG0546|consensus 55.7 17 0.00036 36.5 4.3 67 397-463 281-347 (372)
446 cd02681 MIT_calpain7_1 MIT: do 55.4 23 0.0005 27.0 4.2 18 604-621 18-35 (76)
447 KOG1920|consensus 55.1 4.4E+02 0.0095 31.5 18.5 245 292-577 854-1106(1265)
448 PF11846 DUF3366: Domain of un 54.6 38 0.00082 31.4 6.5 48 341-388 128-175 (193)
449 smart00101 14_3_3 14-3-3 homol 54.2 2.1E+02 0.0046 27.6 20.0 47 608-654 144-199 (244)
450 COG5536 BET4 Protein prenyltra 53.8 2.3E+02 0.0049 27.8 11.8 135 519-668 90-235 (328)
451 PF11846 DUF3366: Domain of un 53.3 43 0.00092 31.0 6.6 51 608-659 127-177 (193)
452 PF14929 TAF1_subA: TAF RNA Po 52.8 3.5E+02 0.0076 29.7 15.2 134 335-472 320-468 (547)
453 PF04097 Nic96: Nup93/Nic96; 52.4 3.5E+02 0.0077 30.4 14.7 147 299-450 268-439 (613)
454 COG5187 RPN7 26S proteasome re 49.1 2.7E+02 0.0059 27.4 13.0 101 356-456 114-223 (412)
455 cd02682 MIT_AAA_Arch MIT: doma 48.6 43 0.00092 25.5 4.6 49 120-168 10-65 (75)
456 PF04348 LppC: LppC putative l 47.2 6.3 0.00014 43.1 0.0 86 298-383 33-124 (536)
457 PF13226 DUF4034: Domain of un 46.9 2.7E+02 0.0058 27.5 11.0 28 376-403 62-89 (277)
458 cd02683 MIT_1 MIT: domain cont 46.5 41 0.00089 25.7 4.4 17 604-620 18-34 (77)
459 cd02680 MIT_calpain7_2 MIT: do 45.5 38 0.00083 25.7 3.9 19 549-567 18-36 (75)
460 COG3014 Uncharacterized protei 45.1 3.4E+02 0.0075 27.4 14.3 103 376-489 40-155 (449)
461 PRK12798 chemotaxis protein; R 44.4 4E+02 0.0086 27.9 23.8 193 328-529 116-321 (421)
462 cd02679 MIT_spastin MIT: domai 44.1 39 0.00085 26.0 3.9 17 604-620 20-36 (79)
463 PF04348 LppC: LppC putative l 42.0 8.5 0.00018 42.1 0.0 112 309-420 9-127 (536)
464 cd02684 MIT_2 MIT: domain cont 41.9 52 0.0011 25.0 4.3 17 604-620 18-34 (75)
465 PF13934 ELYS: Nuclear pore co 40.9 3.3E+02 0.0071 26.0 10.6 103 307-417 64-166 (226)
466 PF02184 HAT: HAT (Half-A-TPR) 40.8 53 0.0012 20.2 3.3 23 340-362 3-25 (32)
467 cd02678 MIT_VPS4 MIT: domain c 40.7 59 0.0013 24.6 4.5 17 604-620 18-34 (75)
468 KOG1114|consensus 40.6 6.6E+02 0.014 29.4 13.9 49 304-352 1090-1138(1304)
469 PF04090 RNA_pol_I_TF: RNA pol 40.0 3.1E+02 0.0068 25.5 11.0 35 330-364 47-82 (199)
470 KOG4151|consensus 39.8 90 0.0019 35.0 7.2 102 544-664 60-165 (748)
471 smart00745 MIT Microtubule Int 38.9 65 0.0014 24.4 4.5 17 604-620 20-36 (77)
472 cd02679 MIT_spastin MIT: domai 38.6 60 0.0013 25.0 4.1 16 515-530 20-35 (79)
473 COG3107 LppC Putative lipoprot 38.3 5.5E+02 0.012 27.8 15.4 62 291-352 65-127 (604)
474 smart00101 14_3_3 14-3-3 homol 37.9 3.8E+02 0.0083 25.9 16.1 50 553-620 144-199 (244)
475 PHA02537 M terminase endonucle 37.6 3.7E+02 0.0081 25.7 10.1 22 403-424 190-211 (230)
476 PF10952 DUF2753: Protein of u 37.4 1.9E+02 0.0042 24.4 7.0 56 395-450 5-75 (140)
477 KOG0889|consensus 35.7 1.4E+03 0.029 31.6 22.6 45 626-670 2812-2856(3550)
478 PHA02537 M terminase endonucle 35.3 1.4E+02 0.0031 28.4 7.0 23 638-660 190-212 (230)
479 PF13226 DUF4034: Domain of un 34.7 4.3E+02 0.0092 26.1 10.3 67 409-475 61-149 (277)
480 PF09205 DUF1955: Domain of un 34.5 3E+02 0.0066 23.7 11.9 90 398-487 9-148 (161)
481 KOG2062|consensus 34.4 7.4E+02 0.016 28.1 21.5 303 336-670 369-691 (929)
482 smart00671 SEL1 Sel1-like repe 34.4 95 0.002 18.8 4.1 29 627-655 2-34 (36)
483 cd02677 MIT_SNX15 MIT: domain 34.0 72 0.0016 24.3 3.9 17 604-620 18-34 (75)
484 PF04212 MIT: MIT (microtubule 33.7 1E+02 0.0022 22.8 4.7 25 630-654 9-33 (69)
485 COG2015 Alkyl sulfatase and re 33.5 61 0.0013 34.0 4.5 48 122-169 458-505 (655)
486 PRK15490 Vi polysaccharide bio 33.1 2.5E+02 0.0054 30.9 9.2 78 336-415 20-98 (578)
487 cd02656 MIT MIT: domain contai 32.9 93 0.002 23.5 4.5 17 604-620 18-34 (75)
488 COG5187 RPN7 26S proteasome re 32.4 5.1E+02 0.011 25.7 12.7 31 460-490 116-146 (412)
489 KOG0687|consensus 32.1 5.5E+02 0.012 26.0 13.0 102 390-491 103-213 (393)
490 cd02681 MIT_calpain7_1 MIT: do 31.6 1E+02 0.0023 23.5 4.4 26 630-655 10-35 (76)
491 PRK09687 putative lyase; Provi 31.4 5.3E+02 0.011 25.5 26.4 41 520-565 222-262 (280)
492 TIGR02710 CRISPR-associated pr 31.1 6.2E+02 0.014 26.3 12.7 55 328-382 134-196 (380)
493 KOG4151|consensus 30.9 1.6E+02 0.0036 33.1 7.4 45 515-559 105-149 (748)
494 PF04090 RNA_pol_I_TF: RNA pol 30.0 4.6E+02 0.0099 24.4 10.9 67 356-422 40-107 (199)
495 PF08238 Sel1: Sel1 repeat; I 29.9 1.2E+02 0.0027 18.7 4.2 30 627-656 2-38 (39)
496 PF12753 Nro1: Nuclear pore co 28.7 88 0.0019 32.2 4.6 46 608-655 334-391 (404)
497 PF10952 DUF2753: Protein of u 28.6 2.9E+02 0.0063 23.4 6.7 23 394-416 53-75 (140)
498 KOG0292|consensus 28.5 6.1E+02 0.013 29.4 11.1 25 296-320 998-1022(1202)
499 PF12583 TPPII_N: Tripeptidyl 28.1 92 0.002 26.5 3.8 47 9-55 69-120 (139)
500 TIGR03362 VI_chp_7 type VI sec 27.8 6.3E+02 0.014 25.3 16.4 61 542-621 218-279 (301)
No 1
>KOG1129|consensus
Probab=100.00 E-value=2.3e-68 Score=492.03 Aligned_cols=459 Identities=43% Similarity=0.693 Sum_probs=432.4
Q ss_pred ccchHHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccccccchhhhhccchhhhccCCCCcc
Q psy16607 11 TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTS 90 (677)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (677)
-+-++|+|+++||++.|+.|++.|+.+|++-|+++++|.|||||||+++||||+|.+++|+++.|||.|.||+.+|||||
T Consensus 4 ~~~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS 83 (478)
T KOG1129|consen 4 LELDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTS 83 (478)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcch
Q psy16607 91 LKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLE 170 (677)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~ 170 (677)
+++|.
T Consensus 84 ~k~p~--------------------------------------------------------------------------- 88 (478)
T KOG1129|consen 84 IKTPF--------------------------------------------------------------------------- 88 (478)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 99532
Q ss_pred hccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCC
Q psy16607 171 AEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPL 250 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 250 (677)
.++|| +++..||.+..|||++|+.||.++++++|++++|.+++|.+.++|++
T Consensus 89 ------------------t~~~g----------~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~ 140 (478)
T KOG1129|consen 89 ------------------TPRPG----------TSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSL 140 (478)
T ss_pred ------------------CCCCC----------CchhhcchhhcCCCCccccCccccCCCCccHHhhccCcccccccccc
Confidence 01222 34556888999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhC---------cC
Q psy16607 251 TSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKAC---------EF 321 (677)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~---------p~ 321 (677)
++.+++.+|+|+++|...+.+.|+++.++|+.+++.++.+.+.++.+++++.+|.+.|...+...++.. ..
T Consensus 141 ~S~sgr~~RlgtaSmaa~~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~ 220 (478)
T KOG1129|consen 141 GSRSGRASRLGTASMAAFNDGKFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCT 220 (478)
T ss_pred ccccchhhhhhhhhhhccCCcceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccch
Confidence 999999999999999999999999999999999999999999999999999999999998777766432 26
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607 322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401 (677)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (677)
.+|||...+|+||++.|.+.+|.+.++..++..|.++++..++++|.+.+++..|+..+.+.++..|.+...+...+.++
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 402 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 481 (677)
..++++++|.++|+.+++.+|.++++...+|.-|+..++++-|+.+|++.+++...+++.+.++|.|++..++++-++..
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607 482 FERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 482 ~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 560 (677)
|++++.....+ ...++|+++|.+.. ..|++.-|.++|+-++..++++.+++++||.+-.+.|+.++|..++
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV--------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAV--------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEE--------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999876643 56899999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHH
Q psy16607 561 ERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 561 ~~al~~~~~p~~~~~~~~l~~~ 582 (677)
..+-. ..|+..+..++++.+
T Consensus 453 ~~A~s--~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 453 NAAKS--VMPDMAEVTTNLQFM 472 (478)
T ss_pred HHhhh--hCccccccccceeEE
Confidence 99998 788888877777654
No 2
>KOG4626|consensus
Probab=100.00 E-value=1.4e-45 Score=366.95 Aligned_cols=456 Identities=18% Similarity=0.195 Sum_probs=288.4
Q ss_pred CCCcccchHHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccccccchhhhhccchhhhccCC
Q psy16607 7 APTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAAR 86 (677)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (677)
+...+.|-+=.|.++++.|+|.+|.+-|+.+-..||.+.+...+-.--..+..++|. - .+ -+.++. |
T Consensus 44 t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~------s--~a---~~~~a~--r 110 (966)
T KOG4626|consen 44 THEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDK------S--SA---GSLLAI--R 110 (966)
T ss_pred CCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhh------h--hh---hhhhhh--h
Confidence 466788999999999999999999999999999999998765543322222111110 0 00 000100 1
Q ss_pred CCcccccccCccCcccccccCCCCCCCccccChHH-HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhh
Q psy16607 87 PGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMF-YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLS 165 (677)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 165 (677)
..+ ...+.+- +|..+-.+|++++|+..|..++++.|+...+|..++.+|...
T Consensus 111 ~~~-------------------------q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~-- 163 (966)
T KOG4626|consen 111 KNP-------------------------QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ-- 163 (966)
T ss_pred ccc-------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc--
Confidence 110 1113343 789999999999999999999999999999998888777655
Q ss_pred hhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCccccc
Q psy16607 166 VDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAK 245 (677)
Q Consensus 166 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 245 (677)
T Consensus 164 -------------------------------------------------------------------------------- 163 (966)
T KOG4626|consen 164 -------------------------------------------------------------------------------- 163 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHH
Q psy16607 246 SARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWW 325 (677)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (677)
|+.+.|.+.|..+++.+|.. .-
T Consensus 164 ---------------------------------------------------------~~~~~a~~~~~~alqlnP~l-~c 185 (966)
T KOG4626|consen 164 ---------------------------------------------------------GDLELAVQCFFEALQLNPDL-YC 185 (966)
T ss_pred ---------------------------------------------------------CCCcccHHHHHHHHhcCcch-hh
Confidence 22223334444445555322 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607 326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL 404 (677)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (677)
....+|..+-..|+..+|..+|.++++..| -..+|..+|.++...|+...|+..|+++++++|...++|+++|.+|...
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA 265 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH
Confidence 224455555555666666666666666555 4455666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 484 (677)
Q Consensus 405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 484 (677)
+.+++|+.+|.+++.+.|.+..++.++|.+|..+|..+-|+..|+++++..|+.+++++++|..+...|+..+|+.+|.+
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 485 al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
++.+.|+. +++.+++|.++. ++|.+++|...|.++++..|..+.++.+||.+|.++|++++|+.+|+.++
T Consensus 346 aL~l~p~h--adam~NLgni~~--------E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 346 ALRLCPNH--ADAMNNLGNIYR--------EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHhCCcc--HHHHHHHHHHHH--------HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 66666665 666666666665 66666666666666666666666666666666666666666666666666
Q ss_pred HHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH
Q psy16607 565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 644 (677)
Q Consensus 565 ~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 644 (677)
. +.|..++++.++|..|. .+|+.+.|+.+|.+++.++|..++++.+||.+|...|+..+
T Consensus 416 r--I~P~fAda~~NmGnt~k-------------------e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYK-------------------EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred h--cCchHHHHHHhcchHHH-------------------HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence 6 56666666666666665 66666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 645 ASTYLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 645 A~~~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
|+..|++++.+.|+.++++.|++.++.
T Consensus 475 AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 666666666666666666666665543
No 3
>KOG4626|consensus
Probab=100.00 E-value=1.8e-44 Score=359.19 Aligned_cols=351 Identities=18% Similarity=0.155 Sum_probs=339.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP 373 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 373 (677)
++.++..+|++++|+..|+.+++..|.. ...+.++|.++...|+.+.|..+|.++++++| ..-+...+|.++...|+.
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 3445566899999999999999999644 44448999999999999999999999999999 678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
.+|..+|.++++..|.-..+|.++|.++...|+...|+..|+++++++|...++|++||.+|...+.++.|+.+|.+++.
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC
Q psy16607 454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533 (677)
Q Consensus 454 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~ 533 (677)
..|++..++.++|.+|..+|..+-|+.+|++++++.|+- ++++.+++..+. ..|+..+|..+|.+++.+.
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALk--------d~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF--PDAYNNLANALK--------DKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHH--------hccchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999996 999999999998 8999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
|+++++.++||.++..+|.+++|..+|+++++ ..|+...++.+||.+|. ++|++++|+.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k-------------------qqgnl~~Ai~ 409 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK-------------------QQGNLDDAIM 409 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH-------------------hcccHHHHHH
Confidence 99999999999999999999999999999999 89999999999999999 9999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCCC
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP 677 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ip 677 (677)
+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+|+.++|...+++.|||.+|...|+||
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 4
>KOG1129|consensus
Probab=100.00 E-value=4e-41 Score=311.60 Aligned_cols=461 Identities=31% Similarity=0.420 Sum_probs=303.1
Q ss_pred ccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCC
Q psy16607 116 TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTS 195 (677)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (677)
.+-++++|+++|++++|+.|.+.|+.+|+..|+++++|.+|+++|+++.|+||+|.|+.|++++++|.+.|++++|||+|
T Consensus 4 ~~~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS 83 (478)
T KOG1129|consen 4 LELDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTS 83 (478)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCcccccCCCCCCCCCCc----hhhhhcCcccccccCCCcchhhhhhhhcccccccCCC
Q psy16607 196 LKTAAVTAPALTSRPRTE-SGRPVSGVVRPGTLASRGGT----LEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPD 270 (677)
Q Consensus 196 ~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (677)
+++|.+ .+|.+. ..||.+...||-+...++.. .....+..|...++++.++ ++. ..
T Consensus 84 ~k~p~t------~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~-------~~S------~s 144 (478)
T KOG1129|consen 84 IKTPFT------PRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARS-------LGS------RS 144 (478)
T ss_pred ccCCCC------CCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccc-------ccc------cc
Confidence 999853 222222 34444444443332222211 1111111111111221111 111 11
Q ss_pred ccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCc----CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 271 GPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACE----FRDWWWKVQLGKCYFSLGLIREAQQQ 346 (677)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~~la~~~~~~g~~~~A~~~ 346 (677)
+.+..+.. +. .+....|.+-. +..++| ..........-.+++...+...|...
T Consensus 145 gr~~Rlgt------------aS----maa~~dG~f~n-------lsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~ 201 (478)
T KOG1129|consen 145 GRASRLGT------------AS----MAAFNDGKFYN-------LSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSL 201 (478)
T ss_pred chhhhhhh------------hh----hhccCCcceee-------hhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHH
Confidence 11111110 00 00111221111 111111 00111111112233344444444444
Q ss_pred HHHHHccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607 347 FNSALNQF---TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT 423 (677)
Q Consensus 347 ~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 423 (677)
+...++.. |.. ..+ .-.+......+|.+|.++|-+.+|.+.++..++..|
T Consensus 202 ~~~~~~~~~a~~s~-----------~~~---------------~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 202 CQAVLEVERAKPSG-----------STG---------------CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred HHHHHHHHhccccc-----------ccc---------------chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence 33333221 000 000 000111223455555555555555555555555444
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q psy16607 424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503 (677)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 503 (677)
.++.+..++.+|.+..++..|+..+.+.++..|.+...+..++.++..++++++|.++|+.+++..|.+ .++...++.
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAcia~ 332 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACIAV 332 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeeeee
Confidence 455555666666666666666666666666666666666666666666666666666666666666665 444333333
Q ss_pred HHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHH
Q psy16607 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHV 582 (677)
Q Consensus 504 ~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~l~~~ 582 (677)
-| |..++++-|+.+|++.+++.-.+++.+.++|.|+...++++-++..|++++....+|+ ..++|+++|.+
T Consensus 333 ~y--------fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 333 GY--------FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred cc--------ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 33 3778888888888888888889999999999999999999999999999999776564 56999999999
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
.. ..|++.-|..+|+-++..++++.+++++||.+-.+.|+.++|..++..+-...|+..+.
T Consensus 405 aV-------------------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 405 AV-------------------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred EE-------------------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 98 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy16607 663 HYNQAVISNLVS 674 (677)
Q Consensus 663 ~~~la~~~~~~G 674 (677)
.+|++.+-...|
T Consensus 466 ~~Nl~~~s~~~g 477 (478)
T KOG1129|consen 466 TTNLQFMSVHYG 477 (478)
T ss_pred ccceeEEeeecC
Confidence 999887655444
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.4e-37 Score=358.34 Aligned_cols=365 Identities=15% Similarity=0.095 Sum_probs=180.8
Q ss_pred HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHH
Q psy16607 298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A 376 (677)
.+...|++++|+..+++.....|.... .+..+|.++...|++++|+..|+++++..| +..++..++.++...|++++|
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNAS-LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 344445555555555555544432222 224455555555555555555555555444 444455555555555555555
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607 377 IDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (677)
+..+++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 55555555555555555555555555555555555555555555555444455555555555555555555555555445
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
.++..|..+|.++...|++++|+..|+++++..|.+ ..++..++.++. ..|++++|+..|+++++.+|++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS--ALALLLLADAYA--------VMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCC
Confidence 555555555555555555555555555555444444 444444444444 4455555555555555444444
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc--------------CCCCcccchhhhHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC--------------SPFSFSTHTSYLFI 602 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~--------------~p~~~~~~~~~~~l 602 (677)
..++..++.++...|++++|+..++.+.. ..|.....+..+|.++...+. .|...........+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 44444444444444444444444444444 334444444444443332221 11110001111133
Q ss_pred hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
...|++++|+..++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.++.+++.++...|+
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 3555666666666666555555555566666666666666666666666666666555555555555555544
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-36 Score=356.60 Aligned_cols=606 Identities=15% Similarity=0.090 Sum_probs=337.3
Q ss_pred hHHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccc-cccccchhhhhccchhhhccCCCCcccc
Q psy16607 14 SMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDL-EAEEEGIADSVLDTNTIATAARPGTSLK 92 (677)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (677)
-+-.|..++..|+|++|+..+.+++.++|.+..+|+..++++..++.+++. ...+..+..- +...... ..-|....
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~-~~~a~~~~ 101 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVL-PLLARAYL 101 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhH-HHHHHHHH
Confidence 566899999999999999999999999999999999999999999998885 3333322211 0000000 00111222
Q ss_pred cccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhc
Q psy16607 93 TAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAE 172 (677)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~ 172 (677)
..++++.++...........+....--+.+|..++..|++++|.+.|+++++.+|.+..+|...+.++...+.+++....
T Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred HCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 23344444443332110011111112255889999999999999999999999999999999999998887766664332
Q ss_pred cccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCCcc
Q psy16607 173 EEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTS 252 (677)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 252 (677)
-+.. +.. .|.. ... ....+......|..+.|....+.+....|...
T Consensus 182 ~~~~---------~~~--~~~~------------------~~~-----~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 182 IDEV---------LTA--DPGN------------------VDA-----LLLKGDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred HHHH---------HHh--CCCC------------------hHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 1110 000 0000 000 00000000112233333322111111111111
Q ss_pred hhhhhhhhcccccccC----CCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHH
Q psy16607 253 QAARTIRLGTASMLSQ----PDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKV 328 (677)
Q Consensus 253 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (677)
.....++...+..+ ....+..+....+.. .....+.+.+++..|++++|+..++++++..|..... +.
T Consensus 228 --~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~ 299 (899)
T TIGR02917 228 --AVLLALATILIEAGEFEEAEKHADALLKKAPNS-----PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA-LL 299 (899)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HH
Confidence 00011111110000 000111111111111 1122334444555566666666666666555432222 24
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (677)
.+|.++...|++++|+..|+++++..| +..++..++.++...|++++|+..+++++...|.+...+..+|.++...|++
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 555555666666666666666655555 4455555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
++|+.+|+++++.+|++...+..++.++...|++++|+..+++++...|........++..+...|++++|+..+++.+.
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554444444444444444444444444444444
Q ss_pred hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567 (677)
Q Consensus 488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 567 (677)
..|.+ ...+..+|.++. ..|++++|+..|+++++.+|.+..++..++.++...|++++|+..|++++.
T Consensus 460 ~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-- 527 (899)
T TIGR02917 460 KQPDN--ASLHNLLGAIYL--------GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT-- 527 (899)
T ss_pred hCCCC--cHHHHHHHHHHH--------hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 44443 444444444444 444444444444444444444444444444444444444444444444444
Q ss_pred hccchHHHHHHHHHHHHHhhc--------------CCCCcccc-hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHH
Q psy16607 568 LNENAADVWYNISHVAIITEC--------------SPFSFSTH-TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL 632 (677)
Q Consensus 568 ~~p~~~~~~~~l~~~~~~~~~--------------~p~~~~~~-~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 632 (677)
..|.+..++..++.++...+. .|...... .....+...|++++|+..+++++...|.++.+|..+
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344444444444444432221 11111111 111133499999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 633 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 633 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
|.++...|++++|+..|+++++.+|+++.++..++.++...|+.
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999998875
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.1e-35 Score=348.63 Aligned_cols=580 Identities=15% Similarity=0.070 Sum_probs=405.1
Q ss_pred CCCcccchHHHHHH-HHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccc-cccchhhhhccchh----
Q psy16607 7 APTATVDSMFYAVD-HFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEA-EEEGIADSVLDTNT---- 80 (677)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 80 (677)
.-.++++-++.-.. -..++|++.|.+.+.+++.++|.|.+++...++++..++.+++... .+....-. +.+.
T Consensus 23 ~~~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~ 100 (1157)
T PRK11447 23 AAPTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS 100 (1157)
T ss_pred ccCCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH
Confidence 33456665554444 4467899999999999999999999999999999998888888633 22211111 1110
Q ss_pred ----hhccCCCC-------cccccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCC
Q psy16607 81 ----IATAARPG-------TSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYD 149 (677)
Q Consensus 81 ----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~ 149 (677)
+....-.| ..+...++++.++...........+.......+........|++++|++.++++++.+|++
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~ 180 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN 180 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC
Confidence 00000011 1122344555555444433222111111111122233334588888888888888888888
Q ss_pred chhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q psy16607 150 KAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLAS 229 (677)
Q Consensus 150 ~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (677)
..++...++++...+..++....-+.+.. .+ ..+.....
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~-------------------~~--------------~~~~~aa~-------- 219 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAK-------------------SP--------------AGRDAAAQ-------- 219 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhh-------------------CC--------------CchHHHHH--------
Confidence 88888888888776665554332111100 00 00000000
Q ss_pred CCCchhhhhcCcccccccCCCcch-hhhhhhhcccccccCCCccchh--hhhhhh-hhhhchHHHHHHHHHHHHhcccCH
Q psy16607 230 RGGTLEQSLKTPRTAKSARPLTSQ-AARTIRLGTASMLSQPDGPFIQ--VSRLNL-AKYARDKTVAKYLFEYLYHHENDV 305 (677)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~-~~~~~~~~~a~~l~~~~~~~~g~~ 305 (677)
...+.+. ..+.... ...+.++- ... +...... ...+.. ......+.....+.+.++...|++
T Consensus 220 ---~~~~~l~-------~~~~~~~~~~~l~~~l--~~~--p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~ 285 (1157)
T PRK11447 220 ---LWYGQIK-------DMPVSDASVAALQKYL--QVF--SDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG 285 (1157)
T ss_pred ---HHHHHHh-------ccCCChhhHHHHHHHH--HHC--CCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH
Confidence 0000000 0000000 00000000 000 0000000 000000 000011122223457778889999
Q ss_pred HHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CH--H------------HHHHHHHHHHHc
Q psy16607 306 ASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DI--E------------AFIRMIRVYIRL 370 (677)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~--~------------~~~~la~~~~~~ 370 (677)
++|+..|+++++..|. +...+..+|.++...|++++|+..|+++++..| +. . ....++.++...
T Consensus 286 ~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 286 GKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 9999999999999954 455568999999999999999999999999887 21 1 224558888999
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHH-----------------
Q psy16607 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV----------------- 433 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----------------- 433 (677)
|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|.+..++..++.
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998776655544
Q ss_pred -------------------------HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607 434 -------------------------NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488 (677)
Q Consensus 434 -------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 488 (677)
++...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..|++++..
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3456799999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH---------------------------------------
Q psy16607 489 ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL--------------------------------------- 529 (677)
Q Consensus 489 ~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a--------------------------------------- 529 (677)
.|++ +..++.++..+. ..+++++|+..++++
T Consensus 525 ~P~~--~~~~~a~al~l~--------~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 525 KPND--PEQVYAYGLYLS--------GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred CCCC--HHHHHHHHHHHH--------hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9988 777777766554 445555554443321
Q ss_pred -HHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 530 -LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 530 -l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
++..|.++..+..+|.++.+.|++++|+..|++++. .+|++..++..++.++. ..|++
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~-------------------~~g~~ 653 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDI-------------------AQGDL 653 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HCCCH
Confidence 235788889999999999999999999999999999 89999999999999999 99999
Q ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHhcCC
Q psy16607 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY------ETHYNQAVISNLVSV 675 (677)
Q Consensus 609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~G~ 675 (677)
++|+..++++++..|+++.++..+|.++...|++++|+.+|++++...|+++ ..+..+|.++...|+
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999877654 355566888877775
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.9e-33 Score=327.80 Aligned_cols=333 Identities=15% Similarity=0.084 Sum_probs=292.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDW-------------WWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D 356 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~ 356 (677)
+...++.++.+.|++++|+..|+++++..|.... +....+|.++...|++++|+..|+++++.+| +
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4556778888899999999999999998874431 1223568888999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHH-------------------------------------
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMAR------------------------------------- 399 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------------------- 399 (677)
..++..+|.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 8899999999999999999999999999999988776654443
Q ss_pred -----HHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q psy16607 400 -----IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474 (677)
Q Consensus 400 -----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 474 (677)
++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++..|.++..++.++.++...++
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 445679999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHH----------------------------------------HhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607 475 YDMVVTCFERA----------------------------------------LSLALNENAADVWYNISHVAILNALSTSV 514 (677)
Q Consensus 475 ~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~~~l~~~~~l~~l~~~~ 514 (677)
+++|+..++++ ++..|.+ ...+..++.++.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~--~~~~~~La~~~~-------- 614 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS--TRIDLTLADWAQ-------- 614 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC--chHHHHHHHHHH--------
Confidence 88887776643 1234555 667888898888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS 594 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~ 594 (677)
..|++++|+..|+++++.+|+++.++..++.++...|++++|+..|++++. ..|++...+..+|.++.
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~---------- 682 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWA---------- 682 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHH----------
Confidence 999999999999999999999999999999999999999999999999998 78999999999999998
Q ss_pred cchhhhHHhcCCCHHHHHHHHHHHHccCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 595 THTSYLFIQGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 595 ~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
..|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 683 ---------~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 683 ---------ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ---------hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999876543 4667789999999999999999999986
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.4e-31 Score=297.52 Aligned_cols=352 Identities=12% Similarity=0.022 Sum_probs=290.7
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc
Q psy16607 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL 370 (677)
Q Consensus 292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 370 (677)
..-.|..++..|+|++|+..|++++...|. ...+.++|.||...|++++|+..++++++.+| +..+++.+|.+|..+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 345677888899999999999999999973 44568999999999999999999999999999 899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcH------------------------------HHH--------------------------
Q psy16607 371 DQPIRAIDIGRNALDCYPNEV------------------------------TIM-------------------------- 394 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~------------------------------~~~-------------------------- 394 (677)
|++++|+..|..+...++.+. ..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999987766544332211 011
Q ss_pred -------HHHHHHH---HHcCChhHHHHHHHHHHHh---CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607 395 -------TEMARIF---EGLNNMPMSVKYYKLILKR---DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 461 (677)
Q Consensus 395 -------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 461 (677)
..++..+ ...+++++|++.|++++.. .|....++..+|.++...|++++|+..|++++..+|.....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 1111111 1235788999999999976 46678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN 541 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 541 (677)
+..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++. ..|++++|+..|+++++.+|++...+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHF--------IKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 9999999999999999999999999999998 899999999998 899999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
.+|.++...|++++|+..|++++. ..|+++.++..+|.++. ..|++++|+..|++++.+
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL-------------------DQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHhc
Confidence 999999999999999999999998 78999999999999998 777777777777777777
Q ss_pred CCCChHHH------HHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 622 DSSHGLSQ------NNLAVL-EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 622 ~p~~~~~~------~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
.|.+...+ ...+.+ +...|++++|+.+++++++++|++..++..+|.++...|++
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 76543221 222222 33357777777777777777777777777777777777764
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.2e-31 Score=293.61 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=241.4
Q ss_pred cCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCY---PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 446 (677)
.+++++|+..|++++... |....++..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 368999999999999864 77788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY 526 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~ 526 (677)
.|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++ ...+..+|.++. ..|++++|+..|
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~--------~~g~~~eA~~~~ 456 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQY--------KEGSIASSMATF 456 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC--HHHHHHHHHHHH--------HCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 889999999998 999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH------HHHHHHHHhhcCCCCcccchhhh
Q psy16607 527 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY------NISHVAIITECSPFSFSTHTSYL 600 (677)
Q Consensus 527 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~------~l~~~~~~~~~~p~~~~~~~~~~ 600 (677)
+++++..|.++.++..+|.++...|++++|+..|++++. ..|.....+. ..+..+.
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~---------------- 518 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALF---------------- 518 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHH----------------
Confidence 999999999999999999999999999999999999999 6665433222 2222221
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 601 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
...|++++|+..+++++.++|++..++..+|.++...|++++|+.+|++++++.+...+.
T Consensus 519 --~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 519 --QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred --HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 157999999999999999999999999999999999999999999999999999876653
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=8.5e-30 Score=282.01 Aligned_cols=336 Identities=11% Similarity=0.029 Sum_probs=309.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP 373 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 373 (677)
+...+++.|++.+|+.+++..+...|..... +..+|.+....|++++|+..|++++..+| +..++..+|.++...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 3344566899999999999999999655444 47999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|++..++..++ .+...|++++|+..+++++.
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988887765 47889999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHH----HHHHHHH
Q psy16607 454 MGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV----ALLFYRR 528 (677)
Q Consensus 454 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~----A~~~~~~ 528 (677)
..|. .......++.++...|++++|+..|++++...|++ ..+++.+|.++. ..|++++ |+..|++
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~--------~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYY--------QSGRSREAKLQAAEHWRH 275 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH--------HcCCchhhHHHHHHHHHH
Confidence 8763 44455667889999999999999999999999998 999999999998 8999986 8999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 529 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 529 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
++..+|+++.++..+|.++...|++++|+..+++++. .+|+++.++..+|.++. ..|++
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~-------------------~~G~~ 334 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALR-------------------QVGQY 334 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HCCCH
Confidence 9999999999999999999999999999999999999 89999999999999999 99999
Q ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663 (677)
Q Consensus 609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 663 (677)
++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++....
T Consensus 335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~ 389 (656)
T PRK15174 335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQS 389 (656)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhh
Confidence 9999999999999999988888889999999999999999999999999875433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3e-29 Score=283.00 Aligned_cols=335 Identities=13% Similarity=0.036 Sum_probs=215.7
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCC---hH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQ---PI 374 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~---~~ 374 (677)
.+.+.++...+....+..| .+...+..++......|++++|...|+++....+ .......++.+|...+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 3566666666666666553 3334446666777777777777777777766432 12233356666655543 11
Q ss_pred -------------------------HHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH
Q psy16607 375 -------------------------RAIDIGRNALDCYPN--EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA 427 (677)
Q Consensus 375 -------------------------~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 427 (677)
.+...+.+++...|. +..+++.+|.++.. +++++|+..|.+++...|++. .
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~ 511 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-Q 511 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-H
Confidence 123333444444555 66677777777765 667777777777777776543 3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q psy16607 428 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507 (677)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l 507 (677)
...++.++...|++++|+..|++++...|.. ..+..+|.++...|++++|+.+|++++...|.. ...+..++....
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~- 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRY- 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHH-
Confidence 4455566666777777777777765554443 345666777777777777777777777776665 444444444443
Q ss_pred hhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh
Q psy16607 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITE 587 (677)
Q Consensus 508 ~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~ 587 (677)
..|++++|+..|+++++.+|+ +..+.++|.++.+.|++++|+..|++++. .+|+++.++.++|.++.
T Consensus 588 -------~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~--- 654 (987)
T PRK09782 588 -------IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW--- 654 (987)
T ss_pred -------hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH---
Confidence 557777777777777777775 66777777777777777777777777777 66777777777777766
Q ss_pred cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
..|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|++.......|
T Consensus 655 ----------------~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 655 ----------------DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred ----------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 7777777777777777777777777777777777777777777777777777777766666666
Q ss_pred HHHHh
Q psy16607 668 VISNL 672 (677)
Q Consensus 668 ~~~~~ 672 (677)
.+...
T Consensus 719 ~~~~~ 723 (987)
T PRK09782 719 EQNQQ 723 (987)
T ss_pred HHHHH
Confidence 55443
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2.5e-28 Score=270.37 Aligned_cols=318 Identities=11% Similarity=-0.014 Sum_probs=297.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
...+..+...|++++|+..++.++...| +..+++.++.+....|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 4667888999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
+++|+..|++++.++|++..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887765 4888999999999999999
Q ss_pred hhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH----HHHHHHH
Q psy16607 487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM----VVTCFER 562 (677)
Q Consensus 487 ~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~ 562 (677)
...|.. .......++.++. ..|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|++
T Consensus 205 ~~~~~~-~~~~~~~l~~~l~--------~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 205 PFFALE-RQESAGLAVDTLC--------AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred hcCCCc-chhHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 887643 1334445567776 89999999999999999999999999999999999999986 8999999
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCH
Q psy16607 563 ALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 642 (677)
Q Consensus 563 al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 642 (677)
++. .+|++..++..+|.++. ..|++++|+..+++++.++|+++.++..+|.++...|++
T Consensus 276 Al~--l~P~~~~a~~~lg~~l~-------------------~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 276 ALQ--FNSDNVRIVTLYADALI-------------------RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHh--hCCCCHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 999 89999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 643 ERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 643 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
++|+..|++++..+|++...+..+|.++...|+.
T Consensus 335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 9999999999999999988888889999988863
No 14
>KOG2002|consensus
Probab=99.97 E-value=7.7e-28 Score=253.46 Aligned_cols=534 Identities=16% Similarity=0.144 Sum_probs=376.0
Q ss_pred hHHHHHHHHhhhch--hHHHHHHHHHhhhCccchhhHHHHhhhhccccccccc-cccccchhhhhccchhhhccCCCCcc
Q psy16607 14 SMFYAVDHFHKRNF--EKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDL-EAEEEGIADSVLDTNTIATAARPGTS 90 (677)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (677)
.+.+++.++..|.- +.|.+.|.-+|.++|.|.-+++-|++.+-....+-.+ -.-.+ ++-.. |+.-
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~----------al~in--p~~~ 198 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK----------ALRIN--PACK 198 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH----------HHhcC--cccC
Confidence 45566666666665 9999999999999999999999999998765555443 22221 11111 1110
Q ss_pred cccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcch
Q psy16607 91 LKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLE 170 (677)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~ 170 (677)
+. .....+.++.++++-+.|+-.+..+|++||.+-.+....+...-... |. +
T Consensus 199 --------------------aD-----~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~--d~-~ 250 (1018)
T KOG2002|consen 199 --------------------AD-----VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFN--DS-D 250 (1018)
T ss_pred --------------------CC-----ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc--ch-H
Confidence 01 11335688999999999999999999999988777766554422221 00 0
Q ss_pred hccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCC
Q psy16607 171 AEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPL 250 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 250 (677)
....|+ ++ + ..+-. .....|+
T Consensus 251 s~~~~~------------------~l------------------------l-------------~~ay~----~n~~nP~ 271 (1018)
T KOG2002|consen 251 SYKKGV------------------QL------------------------L-------------QRAYK----ENNENPV 271 (1018)
T ss_pred HHHHHH------------------HH------------------------H-------------HHHHh----hcCCCcH
Confidence 000000 00 0 00000 0000011
Q ss_pred cchhhhhhhhcccccccCCCccchhhhhhhhhh--hhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHH
Q psy16607 251 TSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK--YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKV 328 (677)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (677)
.. ..+..--.+.+.......+..--... ......-+..++|.+|+.+|+|++|..+|.++++.++.+....++
T Consensus 272 ~l-----~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 272 AL-----NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred HH-----HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 00 11111100111111111110000000 001122256678889999999999999999999999777677778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCcHHH----------
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLD----QPIRAIDIGRNALDCYPNEVTI---------- 393 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~---------- 393 (677)
.+|..+...|+++.|+.+|+++++..| +.++...+|.+|...+ ..+.|..+..++++..|.+.++
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 999999999999999999999999998 7888888998888775 5567777777777777666554
Q ss_pred ----------------------------HHHHHHHHHHcCChhHHHHHHHHHHHh-----CcC-----CHHHHHHHHHHH
Q psy16607 394 ----------------------------MTEMARIFEGLNNMPMSVKYYKLILKR-----DAT-----CMEAIACIGVNH 435 (677)
Q Consensus 394 ----------------------------~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~ 435 (677)
+.++|..++..|++++|...|.+++.. +++ +....+++|.++
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 445666666677777777777777665 111 123467777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--------
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL-------- 507 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l-------- 507 (677)
...++++.|.+.|..+++..|...+.+..+|.+....+...+|...+..++..+..+ +.+|..+|..+.-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n--p~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN--PNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC--cHHHHHHHHHHHhhhhhcccc
Confidence 777777777777877777777777777777766667777777777777777776665 6666555543321
Q ss_pred ---------------------------hhhcc-----cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q psy16607 508 ---------------------------NALST-----SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555 (677)
Q Consensus 508 ---------------------------~~l~~-----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 555 (677)
..+.+ .-..+.+++|++.|.++++.+|.|..+-+.+|.++...|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 11110 0122456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC--CCChHHHHHHH
Q psy16607 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID--SSHGLSQNNLA 633 (677)
Q Consensus 556 A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 633 (677)
|+.+|.++.+ .-.+..++|.++|.||. .+|+|..|++.|+.+++.. .++.+++..||
T Consensus 665 A~dIFsqVrE--a~~~~~dv~lNlah~~~-------------------e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 665 ARDIFSQVRE--ATSDFEDVWLNLAHCYV-------------------EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred HHHHHHHHHH--HHhhCCceeeeHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 9999999998 44568899999999999 9999999999999999854 35689999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
.++++.|++.+|...+.+++.+.|.++...+|+|.+..+++
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 15
>KOG2002|consensus
Probab=99.97 E-value=1e-27 Score=252.45 Aligned_cols=372 Identities=14% Similarity=0.114 Sum_probs=308.3
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C-HHHHHHHHHH
Q psy16607 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDW---WWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D-IEAFIRMIRV 366 (677)
Q Consensus 292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~ 366 (677)
...++.-++..|+|+.+..+...++... .... ..++.+|++|..+|+|++|..+|.++++.++ + .-.++.+|..
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 3334444666899999999999999766 2222 2358999999999999999999999999988 4 7788999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChH
Q psy16607 367 YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN----NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 442 (677)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 442 (677)
++..|++..|+.+|+++++..|++.+....+|.+|...+ ..++|..+..++++..|.+.++|..++.++....-+.
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 999999999999999999999999999999999999886 6788999999999999999999999999987765554
Q ss_pred HHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----ccc---chHHHHHHHHHHHHHhh
Q psy16607 443 VALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNE---NAADVWYNISHVAILNA 509 (677)
Q Consensus 443 ~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~~l~~~~~l~~ 509 (677)
. +..|..++.+ .+-.++.++++|..++..|++++|...|.+++... ++. ......|+++.++.
T Consensus 432 s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E--- 507 (1018)
T KOG2002|consen 432 S-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE--- 507 (1018)
T ss_pred H-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH---
Confidence 4 9999988853 34568999999999999999999999999998771 111 11335899999998
Q ss_pred hcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-
Q psy16607 510 LSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC- 588 (677)
Q Consensus 510 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~- 588 (677)
..++++.|.+.|...++.+|....++..+|......+...+|...++.++. .+..++.+|..+|.++.....
T Consensus 508 -----~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 508 -----ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred -----hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999888888999999999999999 899999999999988875544
Q ss_pred ------------CC-CCcccchh-----hh--HH--------hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC
Q psy16607 589 ------------SP-FSFSTHTS-----YL--FI--------QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 640 (677)
Q Consensus 589 ------------~p-~~~~~~~~-----~~--~l--------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 640 (677)
.+ ...+.++. +| .+ ...+.+++|++.|.+++..+|.|..+-+.+|.++...|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 01 11121111 11 11 14556789999999999999998887788888888888
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 641 HIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 641 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
++.+|+.+|.++.+--.++.++|.|+|.||..+|.
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 88888888888877777777788888888877664
No 16
>KOG1155|consensus
Probab=99.97 E-value=2.3e-26 Score=223.72 Aligned_cols=352 Identities=15% Similarity=0.161 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcC----------------------------CCHHHHHHHHHHHHHcCC
Q psy16607 288 KTVAKYLFEYLYHHENDVASAMDLAVESTKACEF----------------------------RDWWWKVQLGKCYFSLGL 339 (677)
Q Consensus 288 ~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~----------------------------~~~~~~~~la~~~~~~g~ 339 (677)
..+...+.|.++.+.|....|+..+..++...|. ..+...+.++.++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 3457778898888999999999999998887662 122222345566666667
Q ss_pred HHHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607 340 IREAQQQFNSALNQ-FT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417 (677)
Q Consensus 340 ~~~A~~~~~~al~~-~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 417 (677)
.++++.-++..... .| ....-...|.+.....++++|+..|+.+.+.+|-..+-+....++++-.++-.+-.-+.+.+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 77888877777776 45 56666778888888888888888888888888877776666777766666655555555667
Q ss_pred HHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607 418 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 497 (677)
Q Consensus 418 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 497 (677)
..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+ ..+
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRA 400 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRA 400 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHH
Confidence 777777788888899999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607 498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577 (677)
Q Consensus 498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 577 (677)
|+.+|..|. -++.+.-|+-+|+++....|+++..|..||.||.++++.++|+++|++++. ....+..++.
T Consensus 401 WYGLGQaYe--------im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~ 470 (559)
T KOG1155|consen 401 WYGLGQAYE--------IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALV 470 (559)
T ss_pred HhhhhHHHH--------HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHH
Confidence 999999998 889999999999999999999999999999999999999999999999998 5666789999
Q ss_pred HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc-------cCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS-------IDSSHGLSQNNLAVLEAREGHIERASTYLQ 650 (677)
Q Consensus 578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 650 (677)
.+|.+|. ++++..+|..+|++.++ ..|....+...|+.-+.+.+++++|..+..
T Consensus 471 ~LakLye-------------------~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 471 RLAKLYE-------------------ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999 99999999999999998 455566777889999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHH
Q psy16607 651 AAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 651 ~al~~~p~~~~~~~~la~~~ 670 (677)
+++.-++.-.++...+-.+.
T Consensus 532 ~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 532 LVLKGETECEEAKALLREIR 551 (559)
T ss_pred HHhcCCchHHHHHHHHHHHH
Confidence 99988777777665544443
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=9.5e-26 Score=254.76 Aligned_cols=474 Identities=11% Similarity=-0.004 Sum_probs=338.2
Q ss_pred HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCC
Q psy16607 122 YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAV 201 (677)
Q Consensus 122 ~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (677)
.|..+...|++++|+..|.++|+++|++..+++..++++...+..++.+..-+.. +.
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kA---------v~-------------- 106 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQ---------LK-------------- 106 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------Hh--------------
Confidence 6677777799999999999999999999999999999998888777654432110 00
Q ss_pred CCCCCCCCCCCCCCCCccccc-CCCCCCCCCCchhhhhcCcccccccCCCcchhhhhhhhccc-----cc-ccCCCccch
Q psy16607 202 TAPALTSRPRTESGRPVSGVV-RPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTA-----SM-LSQPDGPFI 274 (677)
Q Consensus 202 ~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~ 274 (677)
..|. ......+. .-+........+++.+. ..|... .....++.. .+ ..+......
T Consensus 107 ------ldP~---n~~~~~~La~i~~~~kA~~~ye~l~~-------~~P~n~--~~~~~la~~~~~~~~l~y~q~eqAl~ 168 (987)
T PRK09782 107 ------RHPG---DARLERSLAAIPVEVKSVTTVEELLA-------QQKACD--AVPTLRCRSEVGQNALRLAQLPVARA 168 (987)
T ss_pred ------cCcc---cHHHHHHHHHhccChhHHHHHHHHHH-------hCCCCh--hHHHHHHHHhhccchhhhhhHHHHHH
Confidence 0000 00000000 00000000011222222 111111 011111111 01 111111111
Q ss_pred hhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcc
Q psy16607 275 QVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFS-LGLIREAQQQFNSALNQ 353 (677)
Q Consensus 275 ~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 353 (677)
.+. .........+.+.......+|.+.|++++|+..+.++.+..|.+.... ..++.+|.. +++ ++++.+++..++
T Consensus 169 AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~-~~L~~ay~q~l~~-~~a~al~~~~lk- 244 (987)
T PRK09782 169 QLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAER-RQWFDVLLAGQLD-DRLLALQSQGIF- 244 (987)
T ss_pred HHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhhCH-HHHHHHhchhcc-
Confidence 111 222222223555666668889999999999999999999997665544 788998888 477 888888665333
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cH---------------------------------------
Q psy16607 354 FTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EV--------------------------------------- 391 (677)
Q Consensus 354 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~--------------------------------------- 391 (677)
.+..++..++..|.+.|+.++|...+++.-...+. +.
T Consensus 245 -~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 245 -TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL 323 (987)
T ss_pred -cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998885433221 11
Q ss_pred -----------------------------------------------------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607 392 -----------------------------------------------------TIMTEMARIFEGLNNMPMSVKYYKLIL 418 (677)
Q Consensus 392 -----------------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al 418 (677)
..+...+....+.|++++|...|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 324 LKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred HhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 112233344455566666666666554
Q ss_pred Hh-----------------------------------------------------------------CcC--CHHHHHHH
Q psy16607 419 KR-----------------------------------------------------------------DAT--CMEAIACI 431 (677)
Q Consensus 419 ~~-----------------------------------------------------------------~p~--~~~~~~~l 431 (677)
.. .|. +..+++.+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 41 133 66677888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc
Q psy16607 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS 511 (677)
Q Consensus 432 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~ 511 (677)
|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..|+++....|. ...+..+|.++.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~---~~a~~~la~all----- 553 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS---NEDLLAAANTAQ----- 553 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC---cHHHHHHHHHHH-----
Confidence 888876 788888888888888888654 3556677777889999999999888776555 445677888877
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607 512 TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591 (677)
Q Consensus 512 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~ 591 (677)
..|++++|+.+|+++++.+|.+...+..++..+...|++++|+..|+++++ .+|+ ...+.++|.++.
T Consensus 554 ---~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~-~~a~~~LA~~l~------- 620 (987)
T PRK09782 554 ---AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPS-ANAYVARATIYR------- 620 (987)
T ss_pred ---HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCC-HHHHHHHHHHHH-------
Confidence 889999999999999999998888887777777788999999999999998 7886 888999999988
Q ss_pred CcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus 621 ------------~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 621 ------------QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred ------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q psy16607 672 LVSVI 676 (677)
Q Consensus 672 ~~G~i 676 (677)
.+|++
T Consensus 689 ~lGd~ 693 (987)
T PRK09782 689 RLDDM 693 (987)
T ss_pred HCCCH
Confidence 99985
No 18
>KOG0547|consensus
Probab=99.96 E-value=1.5e-26 Score=226.24 Aligned_cols=339 Identities=16% Similarity=0.134 Sum_probs=294.0
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC
Q psy16607 294 LFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ 372 (677)
Q Consensus 294 l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 372 (677)
-.|.-+++.|+|++|+++|.+++..+|.. +..+.+++-||...|++++.++.+.++++++| .+.++++.+..+..+|+
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 34555777899999999999999999654 55668999999999999999999999999999 89999999999999999
Q ss_pred hHHHHHHHH------------------HHHHc--------------C---CCc---------------------------
Q psy16607 373 PIRAIDIGR------------------NALDC--------------Y---PNE--------------------------- 390 (677)
Q Consensus 373 ~~~A~~~~~------------------~al~~--------------~---p~~--------------------------- 390 (677)
+++|+.-.. +.++. . |..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 887764321 11110 0 000
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607 391 -----------------------------------------------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT 423 (677)
Q Consensus 391 -----------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 423 (677)
..++...|..+.-.|++..|.+.|+.++.++|.
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 012445566677789999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q psy16607 424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503 (677)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 503 (677)
+...+..++.+|...++.++....|.++..++|.++++|+..|++++-++++++|+.-|++++.++|++ .-.+..++.
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCC 436 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 888889998
Q ss_pred HHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc------hHHHHH
Q psy16607 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN------AADVWY 577 (677)
Q Consensus 504 ~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~------~~~~~~ 577 (677)
... +.++++++...|+.+.+..|+.++++...|.++..+++|++|++.|++++. +.|. ++..+.
T Consensus 437 a~Y--------r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 437 ALY--------RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLV 506 (606)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhh
Confidence 887 899999999999999999999999999999999999999999999999999 6776 333444
Q ss_pred HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
..+.+.. .-.+++.+|+..++++++++|....++..||.+..++|+.++|+++|++++.+..
T Consensus 507 ~Ka~l~~------------------qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 507 HKALLVL------------------QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHhhh------------------chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443332 2559999999999999999999999999999999999999999999999999876
Q ss_pred CChHHH
Q psy16607 658 YLYETH 663 (677)
Q Consensus 658 ~~~~~~ 663 (677)
...+..
T Consensus 569 t~~E~~ 574 (606)
T KOG0547|consen 569 TESEMV 574 (606)
T ss_pred hHHHHH
Confidence 655543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=9.6e-26 Score=255.12 Aligned_cols=343 Identities=13% Similarity=-0.003 Sum_probs=255.8
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
.|++++|++.+.++....| .....+..+|.++...|++++|+..|+++++..| +..++..++.++...|++++|+..+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5777777777777776553 3333346777777777777777777777777776 6777777777777777777777777
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHH---------------
Q psy16607 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL--------------- 445 (677)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--------------- 445 (677)
+++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.++...+..++|+
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 777777777777 7777777777777777777777777777777777777777766666655444
Q ss_pred -------------------------------HHHHHHHHcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 446 -------------------------------LFYRRLLQMGLYNAEL-------FNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 446 -------------------------------~~~~~al~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
+.++.+++..|.++.. .......+...|++++|+..|+++++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4444444432222211 11112234567888888888888887
Q ss_pred hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
..+.. -..+...++.++. ..|++++|+..|++++..+|.+ ......++.++...|++++|+..++++
T Consensus 266 ~~~~~-P~~a~~~la~~yl--------~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 266 EGQII-PPWAQRWVASAYL--------KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred cCCCC-CHHHHHHHHHHHH--------hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 75431 0223333577776 8888888888888888877765 355677777888888888888888888
Q ss_pred HHHhhcc-------------c--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607 564 LSLALNE-------------N--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628 (677)
Q Consensus 564 l~~~~~p-------------~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~ 628 (677)
.. ..| + ...++..++.++. ..|++++|+..+++++...|+++.+
T Consensus 337 ~~--~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~-------------------~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 337 IN--NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK-------------------YSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred hh--cCCceEeecCCCCCCCCchHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 87 444 2 2345667777777 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 629 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
+..+|.++...|++++|+..++++++++|++..+++.+|.++...|++
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999988874
No 20
>KOG1126|consensus
Probab=99.96 E-value=8.9e-27 Score=237.41 Aligned_cols=298 Identities=15% Similarity=0.155 Sum_probs=267.0
Q ss_pred HHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHH
Q psy16607 335 FSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY 413 (677)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 413 (677)
..+-+..+|+..|.+.-...+ ...++..+|..|+.+++|++|..+|+.+-++.|-..+..-....++.++.+--+--.+
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 344567889999999544444 5588889999999999999999999999999987776666666777777766665566
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc
Q psy16607 414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493 (677)
Q Consensus 414 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 493 (677)
-+..+..+|..++.|..+|.+|..+++++.|+++|+++++++|....+|..+|.=+.....++.|..+|++|+..+|.+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh- 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH- 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-
Confidence 6778888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
..+|+.+|.+|. ++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+. .+|.++
T Consensus 489 -YnAwYGlG~vy~--------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~ 557 (638)
T KOG1126|consen 489 -YNAWYGLGTVYL--------KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNP 557 (638)
T ss_pred -hHHHHhhhhhee--------ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCc
Confidence 999999999998 999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653 (677)
Q Consensus 574 ~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 653 (677)
-..+..+.++. .++++++|+..+++..++.|+...+++.+|.+|.+.|+.+.|+..|.=|.
T Consensus 558 l~~~~~~~il~-------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 558 LCKYHRASILF-------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred hhHHHHHHHHH-------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 99999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHH
Q psy16607 654 ASSPYLYETH 663 (677)
Q Consensus 654 ~~~p~~~~~~ 663 (677)
+++|.-....
T Consensus 619 ~ldpkg~~i~ 628 (638)
T KOG1126|consen 619 DLDPKGAQIQ 628 (638)
T ss_pred cCCCccchhh
Confidence 9999876643
No 21
>KOG1155|consensus
Probab=99.95 E-value=1.7e-25 Score=217.62 Aligned_cols=325 Identities=16% Similarity=0.202 Sum_probs=283.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHH-----------------------------HHc
Q psy16607 321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVY-----------------------------IRL 370 (677)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~-----------------------------~~~ 370 (677)
..|.+.++..|.++...|....|+..|..++...| ++.+|..++.+. ...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 45677778999999999999999999999999888 777776665543 223
Q ss_pred CChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 371 DQPIRAIDIGRNALDC-YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 371 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
.+.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-..+-.-...++++-.++-.+-.-+.+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 3455666666666666 677777788888888888999999999999988888777766667777776666555556667
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH
Q psy16607 450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529 (677)
Q Consensus 450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a 529 (677)
.+..++...++....+|..|...++.++|+.+|+++++++|.. ..+|..+|+-+. .+++...|++.|+++
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~--~~aWTLmGHEyv--------EmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY--LSAWTLMGHEYV--------EMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch--hHHHHHhhHHHH--------HhcccHHHHHHHHHH
Confidence 7778888888889999999999999999999999999999998 999999999999 999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHH
Q psy16607 530 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR 609 (677)
Q Consensus 530 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~ 609 (677)
++++|.+..+|+.+|+.|.-++.+.-|+-+|++|.. ..|++...|..||.||. ++++.+
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~-------------------kl~~~~ 449 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYE-------------------KLNRLE 449 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHH-------------------HhccHH
Confidence 999999999999999999999999999999999999 89999999999999999 999999
Q ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHhcCCC
Q psy16607 610 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA-------SSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 610 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~G~i 676 (677)
+|+++|++++.....+..+++.||.+|.++++.++|..+|++.++ ..|+-..+..-|+.-++++++.
T Consensus 450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 999999999999988889999999999999999999999999998 4566667777788877777664
No 22
>KOG0547|consensus
Probab=99.95 E-value=3.8e-26 Score=223.46 Aligned_cols=318 Identities=17% Similarity=0.167 Sum_probs=264.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
-..|.-+++.|+|++|+++|.+++...|+ +..|.+++-||...|+|++.++...++++++|+...+++..+.++..+|+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999999995 88899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH------------------HHHHh--------------Cc--------------------------------
Q psy16607 407 MPMSVKYYK------------------LILKR--------------DA-------------------------------- 422 (677)
Q Consensus 407 ~~~A~~~~~------------------~al~~--------------~p-------------------------------- 422 (677)
+.+|+.... +.++. .|
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 998875432 11111 00
Q ss_pred ------------------------------------CC---------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 423 ------------------------------------TC---------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 423 ------------------------------------~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
.+ ..++...|..++..|++-.|...++.++.++|.
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 11 344555566677777788888888888888887
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
....+..++.+|....+.++-...|.++..++|.+ +++|+..|.++. -++++++|+..|++++.++|++.
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n--~dvYyHRgQm~f--------lL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN--PDVYYHRGQMRF--------LLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC--CchhHhHHHHHH--------HHHHHHHHHHHHHHHhhcChhhh
Confidence 77778888888888888888888888888888887 888888888776 67788888888888888888888
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL 617 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~ 617 (677)
-.+..++.+.+++++++++...|+.++. .-|+.++++...+.++. .++++++|++.|++
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLt-------------------DqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILT-------------------DQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHh-------------------hHHhHHHHHHHHHH
Confidence 8888888888888888888888888887 67888888888888777 99999999999999
Q ss_pred HHccCCC------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 618 ALSIDSS------HGLSQNNLAVLEA-REGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 618 al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
++++.|. ++..+.+.|.+.. ..+++..|+.++++|++++|....++..||.+..+.|+|
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 9999998 6666666665443 458999999999999999999999999999999999875
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.8e-24 Score=244.84 Aligned_cols=343 Identities=10% Similarity=-0.052 Sum_probs=286.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR 369 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 369 (677)
+...++.++...|++++|+..++++++..|.+...+ ..++.++...|++++|+..++++++..| +.. +..+|.++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ-RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 345566667778999999999999999986554444 7899999999999999999999999998 777 9999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHH-----------------------------------
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY----------------------------------- 414 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~----------------------------------- 414 (677)
.|++++|+..++++++..|++..++..++.++...+..++|+..+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 999999999999999999999999998998887777766555444
Q ss_pred -----------HHHHHhCcCCHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCH
Q psy16607 415 -----------KLILKRDATCME-------AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQY 475 (677)
Q Consensus 415 -----------~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~ 475 (677)
+++++..|.++. +.......+...|++++|+..|+++++..+..+ .+...+|.+|...|++
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~ 288 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCc
Confidence 444433222211 112212234677999999999999998864432 3444469999999999
Q ss_pred HHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC---------------cHH
Q psy16607 476 DMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---------------NAE 538 (677)
Q Consensus 476 ~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~ 538 (677)
++|+..|++++...|.+ ........++.++. ..|++++|+..++++....|. ...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~--------~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLL--------ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH--------hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 99999999999887654 11345666777776 899999999999999988763 235
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
++..++.++...|++++|+..+++++. ..|++..++..++.++. ..|++++|+..++++
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~-------------------~~g~~~~A~~~l~~a 419 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ-------------------ARGWPRAAENELKKA 419 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHH
Confidence 778899999999999999999999999 89999999999999999 999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
+.++|++..+++.+|.++...|++++|...++++++..|+++.+..
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999986653
No 24
>KOG1126|consensus
Probab=99.95 E-value=1.7e-26 Score=235.30 Aligned_cols=295 Identities=15% Similarity=0.212 Sum_probs=272.3
Q ss_pred cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHH
Q psy16607 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDI 379 (677)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~ 379 (677)
..-+.++|+..|.+.-... .+..|.+..+|+.|+.+++|++|.++|+.+-+..| ..+..-....+++.+.+--+--.+
T Consensus 331 s~y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 3457789999999955555 66668889999999999999999999999999999 555555566666666665555566
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH
Q psy16607 380 GRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA 459 (677)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 459 (677)
.+..+..+|+.++.|..+|.+|..+++++.|+++|+++++++|...-++..+|.-+.....++.|..+|+.++..+|.+-
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL 539 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 539 (677)
.+|+.+|.+|.++++++.|.-.|++|++++|.+ ......+|.++. +.|+.++|+..|++|+.++|.++-.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~--------~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQH--------QLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHH--------HhhhhhHHHHHHHHHHhcCCCCchh
Confidence 999999999999999999999999999999999 888899999998 9999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
.+..|.+++..+++++|+..+++..+ .-|+...+++.+|.+|. ++|+.+.|+..|.-|.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k-------------------~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK-------------------RLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH-------------------HHccchHHHHhhHHHh
Confidence 99999999999999999999999999 88999999999999999 9999999999999999
Q ss_pred ccCCCChH
Q psy16607 620 SIDSSHGL 627 (677)
Q Consensus 620 ~~~p~~~~ 627 (677)
.++|.-..
T Consensus 619 ~ldpkg~~ 626 (638)
T KOG1126|consen 619 DLDPKGAQ 626 (638)
T ss_pred cCCCccch
Confidence 99997554
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.7e-23 Score=221.09 Aligned_cols=295 Identities=14% Similarity=0.069 Sum_probs=235.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE----VTIMTEMARIFE 402 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 402 (677)
+.+|..+...|++++|+..|+++++.+| +..++..+|.++...|++++|+..+++++...+.. ..++..+|.+|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888887 67788888888888888888888888887753322 246778888888
Q ss_pred HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHH
Q psy16607 403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDM 477 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~ 477 (677)
..|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888888888888888888888888888888888888888888776543 245678888888888888
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhccCHHHH
Q psy16607 478 VVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDMV 556 (677)
Q Consensus 478 A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A 556 (677)
|+..|+++++..|+. ..++..++.++. ..|++++|+..+++++..+|.+ ...+..++.+|...|++++|
T Consensus 199 A~~~~~~al~~~p~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 199 ARALLKKALAADPQC--VRASILLGDLAL--------AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHHHhHCcCC--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888876 778888888887 8888888998888888887765 45677888889999999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q psy16607 557 VTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 636 (677)
Q Consensus 557 ~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 636 (677)
+..++++++ ..|+... +..++.++. ..|++++|+..++++++..|++......++..+
T Consensus 269 ~~~l~~~~~--~~p~~~~-~~~la~~~~-------------------~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 269 LEFLRRALE--EYPGADL-LLALAQLLE-------------------EQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHH--hCCCchH-HHHHHHHHH-------------------HhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 999999888 6676544 377888887 899999999999999998888775554444333
Q ss_pred HH--cCCHHHHHHHHHHHHH
Q psy16607 637 AR--EGHIERASTYLQAAAA 654 (677)
Q Consensus 637 ~~--~g~~~~A~~~~~~al~ 654 (677)
.. .|+.++|+..+++.++
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 22 4578888887777664
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=6.5e-23 Score=216.62 Aligned_cols=284 Identities=15% Similarity=0.137 Sum_probs=252.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACI 431 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 431 (677)
.....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345567778889999999999999999999999999999999999999999999999999998854332 3568899
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc---hHHHHHHHHHHHHHh
Q psy16607 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN---AADVWYNISHVAILN 508 (677)
Q Consensus 432 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~~~l~ 508 (677)
|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..+++++...|.+. ....+..++.++.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-- 191 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-- 191 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999999999999999887651 1234567788877
Q ss_pred hhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHhh
Q psy16607 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIITE 587 (677)
Q Consensus 509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~ 587 (677)
..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++. .+|.+ ..++..++.+|.
T Consensus 192 ------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~--- 260 (389)
T PRK11788 192 ------ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE--QDPEYLSEVLPKLMECYQ--- 260 (389)
T ss_pred ------hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HChhhHHHHHHHHHHHHH---
Confidence 899999999999999999999999999999999999999999999999998 66765 466788899988
Q ss_pred cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
..|++++|+..++++++..|+.. .+..++.++.+.|++++|+..++++++..|++......++
T Consensus 261 ----------------~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 261 ----------------ALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred ----------------HcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 99999999999999999999765 4589999999999999999999999999999886664444
Q ss_pred HH
Q psy16607 668 VI 669 (677)
Q Consensus 668 ~~ 669 (677)
..
T Consensus 324 ~~ 325 (389)
T PRK11788 324 YH 325 (389)
T ss_pred Hh
Confidence 33
No 27
>KOG0548|consensus
Probab=99.92 E-value=4.3e-22 Score=198.52 Aligned_cols=351 Identities=14% Similarity=0.092 Sum_probs=286.4
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI 374 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 374 (677)
|...+..|+|+.|+.+|.+++.++|.+. ..+.+..-+|..+|+|++|++--.+.+++.| -+..|..+|..+.-+|+|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nh-vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNH-VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCcc-chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 3345668999999999999999998754 4447899999999999999999999999999 6789999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC------------------------hhHHHHHHHHHHHhCc--------
Q psy16607 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNN------------------------MPMSVKYYKLILKRDA-------- 422 (677)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~al~~~p-------- 422 (677)
+|+..|.+.++.+|++...+..++.++...-. .+.+.....+.+..+|
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999999999999999998888887732200 0111111111111111
Q ss_pred ---------------------------------------------C---------CHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607 423 ---------------------------------------------T---------CMEAIACIGVNHFYNDQPEVALLFY 448 (677)
Q Consensus 423 ---------------------------------------------~---------~~~~~~~la~~~~~~g~~~~A~~~~ 448 (677)
+ -......+|.......++..|++.|
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 0 0123457788888999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR 528 (677)
Q Consensus 449 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~ 528 (677)
..++.++ .+...+.+.+.+|+..|.+.+.+....++++..... ..-+..++.+.. .....+.+.++++.|+.+|.+
T Consensus 248 ~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~--rad~klIak~~~-r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 248 AKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL--RADYKLIAKALA-RLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH--HHHHHHHHHHHH-HhhhhhhhHHhHHHHHHHHHH
Confidence 9999999 888999999999999999999999999988876553 222222333322 112234488999999999999
Q ss_pred HHHcCC--------------------------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607 529 LLQMGL--------------------------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 529 al~~~p--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~ 582 (677)
++.... .-..-...-|..++..|+|..|+..|.+++. .+|+++..+.+.+.|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAAC 401 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHH
Confidence 884332 2223344568899999999999999999999 899999999999999
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
|. ++|.+..|+...+.+++++|+....|...|.++..+.+|++|.+.|+++++.+|++.++
T Consensus 402 ~~-------------------kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 402 YL-------------------KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HH-------------------HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy16607 663 HYNQAVISNL 672 (677)
Q Consensus 663 ~~~la~~~~~ 672 (677)
.-.+..|...
T Consensus 463 ~~~~~rc~~a 472 (539)
T KOG0548|consen 463 IDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 28
>KOG1173|consensus
Probab=99.92 E-value=4.7e-22 Score=198.79 Aligned_cols=286 Identities=10% Similarity=0.071 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
+.+.+...+..++..+++.+..+..+..++.+|-+...+-....++..+|+..+-...-.+.++..|+.+..|+.+|..|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 56788889999999999999999999999999999888765555999999999988888999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~ 515 (677)
...|++.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|.. ..-...+|.-+. .
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--hlP~LYlgmey~--------~ 392 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--HLPSLYLGMEYM--------R 392 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--cchHHHHHHHHH--------H
Confidence 999999999999999999999999999999999999999999999999999999987 555666777777 8
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc--cc---hHHHHHHHHHHHHHhhcCC
Q psy16607 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN--EN---AADVWYNISHVAIITECSP 590 (677)
Q Consensus 516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--p~---~~~~~~~l~~~~~~~~~~p 590 (677)
.++++-|.++|.+++.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..... +. -...+.++|.++.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R------ 466 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR------ 466 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH------
Confidence 899999999999999999999999999999999999999999999999953211 11 2245889999999
Q ss_pred CCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
+++++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++.-+--.|+.+.
T Consensus 467 -------------kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 467 -------------KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred -------------HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999976655555443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=5.8e-21 Score=211.85 Aligned_cols=356 Identities=12% Similarity=0.016 Sum_probs=256.8
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc
Q psy16607 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL 370 (677)
Q Consensus 292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 370 (677)
...-+.+.++.|++..|+..|+++++..|.....++ .++.++...|+.++|+.++++++...+ ....+..+|.++...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 344556678899999999999999999976554553 778888888999999999999994333 566667778899999
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR 450 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 450 (677)
|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+|++.+++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985554 5566666667888779999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHH------------------------------------------------HH
Q psy16607 451 LLQMGLYNAELFNNLALCCFYSQQYDMVVT------------------------------------------------CF 482 (677)
Q Consensus 451 al~~~~~~~~~~~~la~~~~~~g~~~~A~~------------------------------------------------~~ 482 (677)
+++.+|++..++..+..++...|-...|.+ -+
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 999999998887776666665554433332 22
Q ss_pred HHHHhh---hccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHH
Q psy16607 483 ERALSL---ALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMV 556 (677)
Q Consensus 483 ~~al~~---~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 556 (677)
++.+.. .|.. ....+..-.-.++ ...+++.+++..|+.+.... +--.-+....|..|...++.++|
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL--------~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGAL--------LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 233331 1211 0001111111111 14445555555554444222 22222444444444444444555
Q ss_pred HHHHHHH----------------------------------------HHHh-------------hccchHHHHHHHHHHH
Q psy16607 557 VTCFERA----------------------------------------LSLA-------------LNENAADVWYNISHVA 583 (677)
Q Consensus 557 ~~~~~~a----------------------------------------l~~~-------------~~p~~~~~~~~l~~~~ 583 (677)
+.+|+++ .+.. .+|+..++...++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 4444444 4310 1112223333344444
Q ss_pred HHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663 (677)
Q Consensus 584 ~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 663 (677)
...|++.+|.+.+++.+...|.++.++..+|.++...|++.+|...++.+..++|++..+.
T Consensus 427 -------------------~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 427 -------------------VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred -------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy16607 664 YNQAVISNLVSVI 676 (677)
Q Consensus 664 ~~la~~~~~~G~i 676 (677)
+.++.++..+|++
T Consensus 488 ~~~~~~al~l~e~ 500 (822)
T PRK14574 488 RAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHHhhhhH
Confidence 9999999988875
No 30
>KOG0624|consensus
Probab=99.92 E-value=1.1e-21 Score=184.13 Aligned_cols=316 Identities=15% Similarity=0.107 Sum_probs=270.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607 322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI 400 (677)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (677)
.+..-++.+|..++..|++.+|+..|..+++.+| +-.+++..|.+|+.+|+..-|+.-+.+++++-|+-..+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3445557899999999999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhCcCC---HHHH------------HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607 401 FEGLNNMPMSVKYYKLILKRDATC---MEAI------------ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465 (677)
Q Consensus 401 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 465 (677)
+.++|++++|...|+.++..+|++ .++. ......++..|+...|++.....+++.|=+...+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 999999999999999999998854 2222 2234455667899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH--
Q psy16607 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL-- 543 (677)
Q Consensus 466 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-- 543 (677)
+.||...|+...|+.-++.+-++..++ .+.++.++.++. ..|+.+.++...+++++++|++-.++-..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y--------~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDN--TEGHYKISQLLY--------TVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccc--hHHHHHHHHHHH--------hhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 999999999999999999999998888 899999999988 89999999999999999999987654321
Q ss_pred ----------HHHHHhccCHHHHHHHHHHHHHHhhccchHH----HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHH
Q psy16607 544 ----------ALCCFYSQQYDMVVTCFERALSLALNENAAD----VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR 609 (677)
Q Consensus 544 ----------a~~~~~~g~~~~A~~~~~~al~~~~~p~~~~----~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~ 609 (677)
+......++|.++++..++.++ .+|.... .+..+..|+. .-|++.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~-------------------~d~~~~ 324 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYR-------------------EDEQFG 324 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeeccc-------------------ccCCHH
Confidence 2334566788888888888888 6776443 3445566776 899999
Q ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 610 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 610 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
+|+..+.+++.++|++..++...+.+|.....|+.|+..|++|.+.++++..+.-.+-.
T Consensus 325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887765543
No 31
>KOG1173|consensus
Probab=99.91 E-value=6.1e-21 Score=190.90 Aligned_cols=280 Identities=14% Similarity=0.136 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607 326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL 404 (677)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (677)
.....+..++..++|.+..+.++..++.+| +...+-....++...|+..+-..+-.+.++.+|+.+..|+..|..|...
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 336778888888888888888888888888 5555544333888888888888888888888898888899999888888
Q ss_pred CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 484 (677)
Q Consensus 405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 484 (677)
|++.+|..+|.++..++|....+|...|..+...|..++|+..|..+-++.|........+|.-|.+.++++-|.++|.+
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999988889999999998889999999999998888888888888888888888999999999999
Q ss_pred HHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc----CCC---cHHHHHHHHHHHHhccCHHHHH
Q psy16607 485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM----GLY---NAELFNNLALCCFYSQQYDMVV 557 (677)
Q Consensus 485 al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~ 557 (677)
|+.+.|.+ +-++..+|.+.. ..+.+.+|..+|+.++.. .+. -...+.+||.++.+.+++++|+
T Consensus 406 A~ai~P~D--plv~~Elgvvay--------~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 406 ALAIAPSD--PLVLHELGVVAY--------TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHhcCCCc--chhhhhhhheee--------hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999888 888888888876 788889999988888832 121 2356899999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q psy16607 558 TCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 636 (677)
Q Consensus 558 ~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 636 (677)
.+|++++. ..|.++.++..+|.+|. .+|+++.|+++|.+++.+.|++..+-..|+.+.
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~-------------------llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYH-------------------LLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHH-------------------HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999 89999999999999999 999999999999999999999976665555443
No 32
>KOG2003|consensus
Probab=99.91 E-value=4.1e-22 Score=193.02 Aligned_cols=369 Identities=14% Similarity=0.111 Sum_probs=270.8
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhhCcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy16607 294 LFEYLYHHENDVASAMDLAVESTKACEFR----DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIR 369 (677)
Q Consensus 294 l~~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~ 369 (677)
-+|.++++..+|.+|+++|+-++..-|.- ..-++.++|..+.+.|+|++|+..|+..++..|+..+-+++..|++.
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFA 321 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhhee
Confidence 35777888899999999999999887622 22344678888899999999999999999999988888999999999
Q ss_pred cCChHHHHHHHHHHHHcC--------------CCcH--------------------------------------------
Q psy16607 370 LDQPIRAIDIGRNALDCY--------------PNEV-------------------------------------------- 391 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~--------------p~~~-------------------------------------------- 391 (677)
.|+-++-.+.|.+++.+. |++.
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 999988888888887542 1110
Q ss_pred ------------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-HHHHHHHHHHHHhC--CChHHHHHHHHH
Q psy16607 392 ------------------TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHFYN--DQPEVALLFYRR 450 (677)
Q Consensus 392 ------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~ 450 (677)
+.-.+.+..+.+.|+++.|++.++-.-+.+... ..+-.+|..+++.+ .++..|..+.+.
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 001245566788899999988876554444332 23344555555543 356677777777
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607 451 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL 530 (677)
Q Consensus 451 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al 530 (677)
++.++..++.+..+.|.+-+..|++++|.+.|+.++..+... ..+++++|..+. .+|+.++|+.+|-+.-
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc--~ealfniglt~e--------~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC--TEALFNIGLTAE--------ALGNLDEALDCFLKLH 551 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH--HHHHHHhcccHH--------HhcCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777776666 777777777776 7777777777777777
Q ss_pred HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCC----------CCcccchh--
Q psy16607 531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSP----------FSFSTHTS-- 598 (677)
Q Consensus 531 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p----------~~~~~~~~-- 598 (677)
.+--++.++++.++.+|..+.+..+|++++.++.. .-|+++.++..++.+|-..+... ...+.+..
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence 66667777777777777777777777777777777 66777777777777776443311 11121111
Q ss_pred hh---HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 599 YL---FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 599 ~~---~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
-| -|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-|..+.-.+|
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 12 22366667899999999999999888888888999999999999999999999999999888777776655544
No 33
>KOG2076|consensus
Probab=99.91 E-value=8e-21 Score=199.80 Aligned_cols=345 Identities=17% Similarity=0.130 Sum_probs=281.1
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
.|++++|..++.++++++|.....+ +.+|.+|..+|+.+++...+-.+-.++| +.+.|..++....++|++.+|+-+|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay-~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAY-YTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhH-HHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5999999999999999997665555 7999999999999999999999999999 8899999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q psy16607 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQM- 454 (677)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 454 (677)
.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. .......+..+...++-+.|++.++.++..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999932 223345577788888889999999999983
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcc----------------------c--chHHH-HHHHHHHHH
Q psy16607 455 -GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL--ALN----------------------E--NAADV-WYNISHVAI 506 (677)
Q Consensus 455 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~----------------------~--~~~~~-~~~l~~~~~ 506 (677)
+....+.+..++.++.....++.|.......... .++ . ....+ ...++.+..
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 3334456778899999999999999887765541 000 0 00112 333343333
Q ss_pred HhhhcccccCCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHH
Q psy16607 507 LNALSTSVYNDQPEVALLFYRRLLQMGL-YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAI 584 (677)
Q Consensus 507 l~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~ 584 (677)
+.++..+++..+..--...+ ++++.++.++.+|...|++.+|+.+|..+.. ..+ ++..+|+.+|.||.
T Consensus 391 --------~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 391 --------KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWYKLARCYM 460 (895)
T ss_pred --------cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhHHHHHHHH
Confidence 55566666655543332223 4578999999999999999999999999987 333 45679999999999
Q ss_pred HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy16607 585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL----- 659 (677)
Q Consensus 585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 659 (677)
.+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.++....-++.+
T Consensus 461 -------------------~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 461 -------------------ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred -------------------HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 99999999999999999999999999999999999999999999999977433222
Q ss_pred ----hHHHHHHHHHHHhcCCC
Q psy16607 660 ----YETHYNQAVISNLVSVI 676 (677)
Q Consensus 660 ----~~~~~~la~~~~~~G~i 676 (677)
.........+++.+|++
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhH
Confidence 23456677777777753
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.4e-19 Score=201.03 Aligned_cols=338 Identities=11% Similarity=-0.028 Sum_probs=274.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHH
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIR 375 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~ 375 (677)
+.++...|++++|+++|+++++..|.+ ...+..++..+...++.++|+..++++...+|....+..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence 456677899999999999999999766 4444678899999999999999999999999964445666777766788878
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH--------------------------------------------
Q psy16607 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSV-------------------------------------------- 411 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-------------------------------------------- 411 (677)
|+..++++++.+|++.+++..+..++...|-...|.
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999999999988877777776666544443
Q ss_pred ----HHHHHHHHh---CcCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Q psy16607 412 ----KYYKLILKR---DATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVV 479 (677)
Q Consensus 412 ----~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~ 479 (677)
..++..+.. .|.. ..+....-.++...|++.+++..|+.+.... +-...+....|..|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 333333432 2221 2233344556778899999999999887655 335668888999999999999999
Q ss_pred HHHHHHHhhhcc----cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC---------------CcHHHH
Q psy16607 480 TCFERALSLALN----ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL---------------YNAELF 540 (677)
Q Consensus 480 ~~~~~al~~~p~----~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~ 540 (677)
.+|+.++...+. +........|...++ ..+++++|..++++..+..| +-....
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l--------d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLN--------ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHH--------hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999886532 101333455666666 99999999999999997544 234677
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
..++.++...|++.+|.+.+++.+. ..|.+..++..++.++. ..|.+.+|...++.+..
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~-------------------~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYL-------------------ARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHhh
Confidence 7889999999999999999999998 88999999999999999 99999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607 621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663 (677)
Q Consensus 621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 663 (677)
++|++..+...+|.++..+|++.+|....+++++..|++....
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999998543
No 35
>KOG2003|consensus
Probab=99.90 E-value=7.5e-22 Score=191.23 Aligned_cols=339 Identities=17% Similarity=0.125 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16607 325 WWKVQLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA 398 (677)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 398 (677)
....++|.++++..+|.+|+++|+-++..-| ...++.++|..+.+.|+|+.|+..|+.+++..|+ ..+-+++.
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn-~~a~~nl~ 316 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN-FIAALNLI 316 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc-HHhhhhhh
Confidence 3345567777777777777777777777655 3456667777777777888888888777777773 44445566
Q ss_pred HHHHHcCChhHHHHHHHHHHHhC--------------cCC----------------------------------------
Q psy16607 399 RIFEGLNNMPMSVKYYKLILKRD--------------ATC---------------------------------------- 424 (677)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~al~~~--------------p~~---------------------------------------- 424 (677)
.+++..|+-++-.+.|.+.+.+. |++
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 66777777777777777766541 100
Q ss_pred ----------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH--cCCHHHHH
Q psy16607 425 ----------------------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFY--SQQYDMVV 479 (677)
Q Consensus 425 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~--~g~~~~A~ 479 (677)
.+.-.+.+.-+.+.|+++.|+++++-.-+.+... ..+-.++..+++. -.++..|.
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 0011123445667777777777766554444332 2334555555555 34677888
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy16607 480 TCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 559 (677)
Q Consensus 480 ~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 559 (677)
.+-..++.++.-+ +.+..+.|.+.. ..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+
T Consensus 477 qyad~aln~dryn--~~a~~nkgn~~f--------~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 477 QYADIALNIDRYN--AAALTNKGNIAF--------ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred HHHHHHhcccccC--HHHhhcCCceee--------ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH
Confidence 8888888888777 888999998876 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhc--------------CCCCcccchhhh-HHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 560 FERALSLALNENAADVWYNISHVAIITEC--------------SPFSFSTHTSYL-FIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 560 ~~~al~~~~~p~~~~~~~~l~~~~~~~~~--------------~p~~~~~~~~~~-~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
|-+.-. +--++..+++.++.+|..++. .|..+...+.+. .|-+.|+..+|.+++-......|-
T Consensus 547 f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 547 FLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 999877 557889999999999985544 233333323232 555667777777766666666677
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 625 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
+.++.-+||..|....-+++|+.+|+++.-+.|+........+.|+.+.||.
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 7777777777777777788888999998888898888888888888888874
No 36
>KOG0495|consensus
Probab=99.90 E-value=4e-20 Score=187.07 Aligned_cols=355 Identities=12% Similarity=0.049 Sum_probs=302.9
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI 377 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 377 (677)
+...+-++-|..+|..+++.+|.....| ...+..--..|..++-..+|++++..-| ....|+..+..+...|+...|.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slW-lra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLW-LRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHH
Confidence 4456889999999999999998877777 5777777777999999999999999998 6677888899999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
.++.++++.+|++.++|+.-..+.....+++.|..+|.++....| ...+|+.-+.+...+++.++|+.+++++++..|+
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999998777 6788899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
....|..+|+++.++++.+.|...|...++..|.. ...|..++.+-. +.|+.-.|...++++.-.+|.+.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--ipLWllLakleE--------k~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--IPLWLLLAKLEE--------KDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--chHHHHHHHHHH--------HhcchhhHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999998 999999999988 88999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC--------Ccccchhhh---HHhcCC
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF--------SFSTHTSYL---FIQGIS 606 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~--------~~~~~~~~~---~l~~~g 606 (677)
..|......-.+.|..+.|...+.+|++ ..|.....|..-....-...+... ..+.+.... .+....
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999 778877776644332210000000 011222221 334667
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
++++|.+.|.++++.+|++.++|..+-..+...|.-++-.+.|.++....|.+.+.|....
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 7888888888888888888888888888888888888888888888888888887776544
No 37
>KOG2076|consensus
Probab=99.90 E-value=2.6e-20 Score=195.96 Aligned_cols=319 Identities=14% Similarity=0.125 Sum_probs=263.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
...|..++..|++++|...+.++++.+| +..+|+.+|.+|...|+.+++....-.+-.++|.+.+.|..++....++|+
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 5667778888999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~ 481 (677)
+.+|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|... ......+..+...++-+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998322 2334557888888888999999
Q ss_pred HHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH--cCCC------------------------
Q psy16607 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ--MGLY------------------------ 535 (677)
Q Consensus 482 ~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~------------------------ 535 (677)
++.++....+....+.+..++.+++ +..+++.|......... ..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l--------~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFL--------KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHH--------HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 9999984333222445566777776 77888888877765553 0010
Q ss_pred --cHHH-HHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 536 --NAEL-FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 536 --~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
+..+ ...++.+..+.+...+++..+ .......+ ++++.+..++..+. ..|++.+|
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~n~~~~d~~dL~~d~a~al~-------------------~~~~~~~A 433 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHF--LVEDNVWVSDDVDLYLDLADALT-------------------NIGKYKEA 433 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHH--HHHhcCChhhhHHHHHHHHHHHH-------------------hcccHHHH
Confidence 1112 333333344444444554444 33311223 56788999999999 99999999
Q ss_pred HHHHHHHHccCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 612 IQCLHLALSIDSS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 612 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
+.+|..+....+. +..+|+.+|.||..+|.+++|+..|++++.+.|++.++...|+.++.++|+
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 9999999887663 467999999999999999999999999999999999999999999999997
No 38
>KOG0495|consensus
Probab=99.89 E-value=8.4e-19 Score=177.63 Aligned_cols=461 Identities=14% Similarity=0.140 Sum_probs=358.8
Q ss_pred HHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccc-cccchhhhhc-----c-chhhhccC---CCCcc
Q psy16607 21 HFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEA-EEEGIADSVL-----D-TNTIATAA---RPGTS 90 (677)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~-~~~~~~~~---~~~~~ 90 (677)
|-|.--|+.|..+.+++=++=|.+-..|..-++.=-..|.+|-++. ...++.++-. + ++++..+. +-|
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-- 493 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG-- 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC--
Confidence 4466679999999999999999999999998887777777777633 3334443311 1 12222211 111
Q ss_pred cccccCccCccccccc-------CCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhh
Q psy16607 91 LKTAANDQQPISTSVM-------STPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQ 163 (677)
Q Consensus 91 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 163 (677)
..++|+.- ..+...-...+ +--|.++..++-++-|.++|..+|+..|.+...|......=..-
T Consensus 494 --------sv~TcQAIi~avigigvEeed~~~tw--~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 494 --------SVITCQAIIRAVIGIGVEEEDRKSTW--LDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred --------ChhhHHHHHHHHHhhccccchhHhHH--hhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc
Confidence 11222211 00111111111 33688999999999999999999999999999996543211111
Q ss_pred hhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCccc
Q psy16607 164 LSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRT 243 (677)
Q Consensus 164 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 243 (677)
+..++.+.- +..|+.
T Consensus 564 gt~Esl~Al-------------------------------------------------------------lqkav~---- 578 (913)
T KOG0495|consen 564 GTRESLEAL-------------------------------------------------------------LQKAVE---- 578 (913)
T ss_pred CcHHHHHHH-------------------------------------------------------------HHHHHH----
Confidence 111111000 000000
Q ss_pred ccccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCC
Q psy16607 244 AKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRD 323 (677)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (677)
.-+ ...+...+....+...|+...|..++.++.+..|.+.
T Consensus 579 -----------------------~~p-----------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 579 -----------------------QCP-----------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred -----------------------hCC-----------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 000 0001222233335556999999999999999998766
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607 324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403 (677)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (677)
..| +......+...+++.|..+|.++....|...+|+.-+.+...+++.++|+.+++++++.+|.....|..+|.++.+
T Consensus 619 eiw-laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 619 EIW-LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHH-HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 666 5777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 404 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 483 (677)
+++.+.|.+.|...++..|..+..|..++.+-...|+.-.|..+++++.-.+|.+...|.....+-.+.|..+.|...+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 484 ~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
+|++..|++ ...|..-..+.- .-++-..++ .+++....++.++...|.++....++++|.++|.++
T Consensus 778 kALQecp~s--g~LWaEaI~le~--------~~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 778 KALQECPSS--GLLWAEAIWLEP--------RPQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHhCCcc--chhHHHHHHhcc--------CcccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 666665554443 334434444 455566788999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607 564 LSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634 (677)
Q Consensus 564 l~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 634 (677)
+. .+|++.++|..+-..+. ..|.-++-.+.+.++....|.+.+.|.....
T Consensus 844 vk--~d~d~GD~wa~fykfel-------------------~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 844 VK--KDPDNGDAWAWFYKFEL-------------------RHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred Hc--cCCccchHHHHHHHHHH-------------------HhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 99 89999999999888888 9999999999999999999999998877654
No 39
>KOG0624|consensus
Probab=99.88 E-value=5.6e-20 Score=172.65 Aligned_cols=319 Identities=12% Similarity=0.113 Sum_probs=269.7
Q ss_pred hHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHH
Q psy16607 287 DKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIR 365 (677)
Q Consensus 287 ~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~ 365 (677)
.-.+.+.++. .|++..|+..|..+++.+| +....++..|.+|+..|+-.-|+.-+.+++++.| -..+....|.
T Consensus 41 hlElGk~lla-----~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLA-----RGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHH-----hhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 3344444444 6999999999999999995 4555558999999999999999999999999999 5678899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHH---H------------HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH
Q psy16607 366 VYIRLDQPIRAIDIGRNALDCYPNEVT---I------------MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430 (677)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~---~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 430 (677)
+++++|++++|..-|+.+++.+|++.. + +......+.-.|+...|+++....+++.|-++..+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 999999999999999999999995432 2 2334445566799999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH-HHHHHHH-HHHh
Q psy16607 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV-WYNISHV-AILN 508 (677)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~l~~~-~~l~ 508 (677)
.+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+....-. |-.+-.+ -.+.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999721111 1111111 1112
Q ss_pred hhcccccCCCHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAEL----FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
........++|.++++..++.++.+|..+.+ +..+..|+...+++.+|+..+.+++. .+|+++.++...+..|+
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHh
Confidence 2233447899999999999999999985543 44567888899999999999999999 99999999999999998
Q ss_pred HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHH
Q psy16607 585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL 632 (677)
Q Consensus 585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 632 (677)
....|+.|+..|+++.+.++++..+...+
T Consensus 353 -------------------~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 353 -------------------GDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred -------------------hhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999999987665444
No 40
>KOG1174|consensus
Probab=99.88 E-value=1.6e-19 Score=173.70 Aligned_cols=322 Identities=14% Similarity=0.051 Sum_probs=286.4
Q ss_pred CcCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16607 319 CEFRDWWWKVQLGKCYFSLGLIREAQQQF--NSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT 395 (677)
Q Consensus 319 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~--~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (677)
.|..+|.|....+.+.+..++...|...+ -.-....| +...+..+|.+++..|++.+|+..|+++.-++|.+....-
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 44556666556666666666665555544 44444556 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q psy16607 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 475 (677)
Q Consensus 396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 475 (677)
..|.++...|+++.-.......+..+.....-|+--+..++...++..|+.+-+++++.+|.+..++...|.++...|+.
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence 99999999999999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHH-HHH-HhccCH
Q psy16607 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA-LCC-FYSQQY 553 (677)
Q Consensus 476 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~-~~~g~~ 553 (677)
++|+-.|+.+..+.|.. .+.|..+..+|. ..|++.+|...-+.+++.-|.++.++..+| .++ ..----
T Consensus 351 ~~A~IaFR~Aq~Lap~r--L~~Y~GL~hsYL--------A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLAPYR--LEIYRGLFHSYL--------AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHHHHHHHHhcchhh--HHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 99999999999999988 899999999998 999999999999999999999999999996 444 344456
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH
Q psy16607 554 DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633 (677)
Q Consensus 554 ~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 633 (677)
++|.+++++++. .+|....+-..++.++. ..|.+++++..+++.+...|+ ...+..||
T Consensus 421 EKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~-------------------~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lg 478 (564)
T KOG1174|consen 421 EKAKKFAEKSLK--INPIYTPAVNLIAELCQ-------------------VEGPTKDIIKLLEKHLIIFPD-VNLHNHLG 478 (564)
T ss_pred HHHHHHHHhhhc--cCCccHHHHHHHHHHHH-------------------hhCccchHHHHHHHHHhhccc-cHHHHHHH
Confidence 899999999999 99999999999999998 999999999999999998876 46889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
.++...+.+++|+++|..|+.++|++..+.-.+-.+-..
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 999999999999999999999999999988877665443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=1.4e-22 Score=203.01 Aligned_cols=261 Identities=17% Similarity=0.222 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDC--YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 438 (677)
+.+|.++...|++++|++++++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 45677788888888888888655443 377777888888888888888888888888888877777777777777 677
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHhhhcccccC
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYN 516 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~l~~l~~~~~~ 516 (677)
+++++|+.+++++.+.. .++..+.....++...++++++...++++.... +.+ +..|..+|.++. +.
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~--------~~ 159 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS--ARFWLALAEIYE--------QL 159 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---HHHHHHHHHHHH--------HC
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHH--------Hc
Confidence 88888888888777655 345666677777888888888888888866544 333 777888888887 88
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~ 596 (677)
|++++|+..|+++++.+|+++.+...++.++...|+++++...++.... ..|.++..|..+|.++.
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~------------ 225 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYL------------ 225 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHH------------
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhc------------
Confidence 8888888888888888888888888888888888888888888888777 45777778888888888
Q ss_pred hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
.+|++++|+.+|++++..+|+++.++..+|.++...|+.++|..++++++.
T Consensus 226 -------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 226 -------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred -------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888888888888888888888888888888888888888888888765
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=4.3e-18 Score=194.30 Aligned_cols=327 Identities=11% Similarity=0.091 Sum_probs=276.2
Q ss_pred HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHH
Q psy16607 298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIR 375 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~ 375 (677)
.+...|++++|..+++++.+.....+...+..+..+|.+.|++++|...|+++.+.. |+..+|..+...|.+.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 366789999999999999888766677777889999999999999999999998754 588999999999999999999
Q ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----CcCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607 376 AIDIGRNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR----DATCMEAIACIGVNHFYNDQPEVALLFYRR 450 (677)
Q Consensus 376 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 450 (677)
|+.+|+++.+.. ..+...|..+...|.+.|++++|.++|.++... .| +...+..+...|.+.|++++|.++|++
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999987643 226778899999999999999999999998763 34 567888888999999999999999999
Q ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHH
Q psy16607 451 LLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSL--ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYR 527 (677)
Q Consensus 451 al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~ 527 (677)
+.+.+ +.+...|..+...|.+.|++++|+..|+++... .|+ ...+..+...+. +.|++++|.+.+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD---~~TynsLI~a~~--------k~G~~eeA~~l~~ 673 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD---EVFFSALVDVAG--------HAGDLDKAFEILQ 673 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH--------hCCCHHHHHHHHH
Confidence 98876 457788999999999999999999999998876 344 667778888887 8999999999999
Q ss_pred HHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607 528 RLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS 606 (677)
Q Consensus 528 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g 606 (677)
++.+.. +.+...|..+...|.+.|++++|..+|+++......| +...|..+...|. +.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~-------------------k~G 733 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALC-------------------EGN 733 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-------------------HCC
Confidence 998764 4567889999999999999999999999987744445 4567888888888 999
Q ss_pred CHHHHHHHHHHHHccC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 607 DTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 607 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
++++|++.|+++.... ..+..+|..+...+.+.|++++|..++.++++..
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999887642 2245678888899999999999999999998854
No 43
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=2.4e-18 Score=194.47 Aligned_cols=318 Identities=13% Similarity=0.047 Sum_probs=260.7
Q ss_pred cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
..|+...+.+++..+.+..-..+...+..+...|.+.|++++|...|+++. .++..+|..+...|.+.|++++|+.+|
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 357777777877777776655566666788899999999999999998763 247788899999999999999999999
Q ss_pred HHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 381 RNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 381 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
+++.+.. ..+...+..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.++|+++.+ .+
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d 390 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KN 390 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC
Confidence 9887643 2256678888899999999999999999988876 44677888899999999999999999988754 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC--Cc
Q psy16607 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL--YN 536 (677)
Q Consensus 459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p--~~ 536 (677)
...|+.+...|.+.|+.++|++.|+++.+....+ ....+..+...+. ..|..++|.++|+.+.+..+ .+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~--------~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACR--------YSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHh--------cCCcHHHHHHHHHHHHHhcCCCCC
Confidence 6789999999999999999999999987654322 1556666777776 88999999999999886432 34
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
...|..+..+|.+.|++++|.+.++++- ..| +...|..+...+. ..|+++.|...++
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p-~~~~~~~Ll~a~~-------------------~~g~~~~a~~~~~ 518 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRAP---FKP-TVNMWAALLTACR-------------------IHKNLELGRLAAE 518 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHCC---CCC-CHHHHHHHHHHHH-------------------HcCCcHHHHHHHH
Confidence 5678889999999999999999987652 334 4556888888887 9999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 617 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 617 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
+++++.|++...|..++.+|.+.|++++|.+.++.+.+.
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998765
No 44
>PLN03077 Protein ECB2; Provisional
Probab=99.86 E-value=6.8e-19 Score=203.81 Aligned_cols=335 Identities=12% Similarity=0.040 Sum_probs=209.5
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A 376 (677)
|.+.|++++|.++|+++... +...+..+...|.+.|++++|+..|+++.+.. |+..++..+...+.+.|++++|
T Consensus 333 y~k~g~~~~A~~vf~~m~~~----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCC----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 44455555555555554321 11222445555555555555555555554322 3444444444455555555555
Q ss_pred HHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 377 IDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 377 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
.+++..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+.+|+++....
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 555555544321 2334444555555555555555555554322 233445555555555555555555555544322
Q ss_pred CC-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607 456 LY-----------------------------------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500 (677)
Q Consensus 456 ~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 500 (677)
+. +......+...|.+.|+.++|...|+.. .+ + ...|..
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~-d--~~s~n~ 559 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK-D--VVSWNI 559 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC-C--hhhHHH
Confidence 22 2233445556777778888888777775 23 2 677777
Q ss_pred HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HhhccchHHHHHH
Q psy16607 501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALS-LALNENAADVWYN 578 (677)
Q Consensus 501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~p~~~~~~~~ 578 (677)
+...+. ..|+.++|++.|+++.+.. ..+...+..+...+.+.|..++|..+|+.+.+ ....| +...|..
T Consensus 560 lI~~~~--------~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~ 630 (857)
T PLN03077 560 LLTGYV--------AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYAC 630 (857)
T ss_pred HHHHHH--------HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHH
Confidence 777777 7888888888888877543 22345566666777888888888888888773 22233 3456677
Q ss_pred HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 658 (677)
+..++. +.|++++|.+.++++ ...|+ ..+|..|-..+...|+.+.|....+++++++|+
T Consensus 631 lv~~l~-------------------r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 631 VVDLLG-------------------RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHH-------------------hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 777777 999999999999886 35554 678888888888899999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCC
Q psy16607 659 LYETHYNQAVISNLVSVI 676 (677)
Q Consensus 659 ~~~~~~~la~~~~~~G~i 676 (677)
+...+..++.+|...|++
T Consensus 690 ~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 690 SVGYYILLCNLYADAGKW 707 (857)
T ss_pred CcchHHHHHHHHHHCCCh
Confidence 999999999999988874
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=1.2e-17 Score=190.73 Aligned_cols=343 Identities=10% Similarity=0.023 Sum_probs=249.7
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A 376 (677)
+...|..++|+.+++.+.. .+...+..+-.++.+.|++++|...|+++.+.. |+..++..+...|.+.|++++|
T Consensus 416 ~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 4455666666666665543 234444666777777888888888888877754 4777788888888888888888
Q ss_pred HHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 377 IDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 377 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
..+|+++.+... .+...|..+...|.+.|++++|++.|.++....- .+...|..+...|.+.|++++|.++++++...
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888776542 2677777888888888888888888887765432 25667778888888888888888888887652
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH
Q psy16607 455 G---LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ 531 (677)
Q Consensus 455 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~ 531 (677)
. ..+...+..+...|.+.|++++|.+.|+++.+.+... ....|..+...+. +.|++++|+..|.++.+
T Consensus 572 ~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~--------k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCS--------QKGDWDFALSIYDDMKK 642 (1060)
T ss_pred cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHH--------hcCCHHHHHHHHHHHHH
Confidence 1 2245677777778888888888888888877765322 1567777777777 78888888888888775
Q ss_pred cC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607 532 MG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610 (677)
Q Consensus 532 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~ 610 (677)
.. ..+...|..+...|.+.|++++|.++++++.+.+.. .+...+..+...|. +.|++++
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~-------------------k~G~~ee 702 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACS-------------------NAKNWKK 702 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH-------------------hCCCHHH
Confidence 42 223567777888888888888888888888774333 34556777777777 9999999
Q ss_pred HHHHHHHHHcc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCC
Q psy16607 611 AIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--SPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 611 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~G~i 676 (677)
|++.|+++... .| +...|..+...|.+.|++++|.++|+++... .|+ ...+..+...+.+.|++
T Consensus 703 A~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 703 ALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCH
Confidence 99999988653 34 4678999999999999999999999998765 344 45666666777777753
No 46
>KOG1174|consensus
Probab=99.86 E-value=6.6e-18 Score=162.60 Aligned_cols=309 Identities=13% Similarity=0.110 Sum_probs=269.2
Q ss_pred HhcccCHHH--HHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHH
Q psy16607 299 YHHENDVAS--AMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIR 375 (677)
Q Consensus 299 ~~~~g~~~~--A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 375 (677)
++..++... +..++-+-....| +....+..+|.+++..|++.+|+..|+++...+| .....-..|.++...|++++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr-~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLR-CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCC-ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 333444444 4444555555554 4445558999999999999999999999999999 88888889999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
-..+....+........-|+.-+......+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+.
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 99999999988877888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHH-HHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS-HVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 456 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~-~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
|...+.|..+..+|...|++.+|...-..++..-|.+ +.++..+| .++. +.-.--++|...+++.+++.|
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s--A~~LtL~g~~V~~-------~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS--ARSLTLFGTLVLF-------PDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc--hhhhhhhcceeec-------cCchhHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999999988 77777776 4443 234456899999999999999
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~ 614 (677)
....+...++.++...|.+++++.++++.+. +-.+...+..+|.++. ..+.+++|..+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~-------------------A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMR-------------------AQNEPQKAMEY 493 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHH-------------------HhhhHHHHHHH
Confidence 9999999999999999999999999999996 4445678899999998 99999999999
Q ss_pred HHHHHccCCCChHHHHHHHHHHHHc
Q psy16607 615 LHLALSIDSSHGLSQNNLAVLEARE 639 (677)
Q Consensus 615 ~~~al~~~p~~~~~~~~la~~~~~~ 639 (677)
|..++.++|++..+.-.+-.+....
T Consensus 494 y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHhcCccchHHHHHHHHHHhcc
Confidence 9999999999988777665554443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=1.8e-18 Score=182.08 Aligned_cols=296 Identities=10% Similarity=-0.001 Sum_probs=182.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCC
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV-TIMTEMARIFEGLNN 406 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 406 (677)
..|...+..|+++.|.+.+.++.+..| ....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 445555666666666666666666555 334445556666666666666666666666666553 344445666666666
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHcCCHHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN----NLALCCFYSQQYDMVVTCF 482 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~ 482 (677)
+++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+++...+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 666666666666666666666666666666666666666666666665433332221 1111123333444445555
Q ss_pred HHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHhccCHHHHHH
Q psy16607 483 ERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF--NNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 483 ~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~ 558 (677)
.++....|.. .....+..++..+. ..|++++|...++++++..|++.... ..........++.+.+++
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~--------~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLI--------DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHH--------HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 5665555521 11666666666666 66777777777777777666665421 222222333466677777
Q ss_pred HHHHHHHHhhccchH--HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH--HHHccCCCChHHHHHHHH
Q psy16607 559 CFERALSLALNENAA--DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH--LALSIDSSHGLSQNNLAV 634 (677)
Q Consensus 559 ~~~~al~~~~~p~~~--~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~ 634 (677)
.++++++ ..|+++ .....+|.++. +.|++++|.++|+ .+++..|++.. +..+|.
T Consensus 321 ~~e~~lk--~~p~~~~~~ll~sLg~l~~-------------------~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ 378 (409)
T TIGR00540 321 LIEKQAK--NVDDKPKCCINRALGQLLM-------------------KHGEFIEAADAFKNVAACKEQLDAND-LAMAAD 378 (409)
T ss_pred HHHHHHH--hCCCChhHHHHHHHHHHHH-------------------HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHH
Confidence 7777777 677777 66777777777 7777777777777 46666665544 457788
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q psy16607 635 LEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 635 ~~~~~g~~~~A~~~~~~al~ 654 (677)
++.+.|+.++|.++|++++.
T Consensus 379 ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888777755
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=1.4e-18 Score=196.41 Aligned_cols=341 Identities=12% Similarity=-0.046 Sum_probs=248.5
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A 376 (677)
|.+.|++++|+.+|+++.+.....+...+..+...+...|..+.+.+++..+++.. ++..++..+...|.+.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 45556677777777766665544444444555566666666666666666665543 3666667777788888888888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 377 IDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
...|++.. +.+...|..+...|.+.|++++|+++|+++.+..- -+..++..+...+...|++++|.+++..+++..
T Consensus 279 ~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 279 RCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 88877653 34667777888888888888888888877765432 255677777777888888888888888777765
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-
Q psy16607 456 -LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG- 533 (677)
Q Consensus 456 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~- 533 (677)
+.+..++..+...|.+.|++++|...|+++.+ |+ ...|..+...|. +.|+.++|++.|+++.+..
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d---~~t~n~lI~~y~--------~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN---LISWNALIAGYG--------NHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC---eeeHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCC
Confidence 45666777788888888888888888877654 22 566777777777 7788888888888877532
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
..+...+..+..++.+.|..++|..+|+.+.+...-..+...|..+...+. +.|++++|.+
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-------------------r~G~~~eA~~ 483 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-------------------REGLLDEAYA 483 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-------------------hcCCHHHHHH
Confidence 234556777777778888888888888877652111123345666666666 9999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
.++++- ..| +..+|..+...+...|+++.|...+++++++.|++...+..++.+|...|++
T Consensus 484 ~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 484 MIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 998752 334 4678999999999999999999999999999999999999999999998874
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=4.3e-21 Score=192.22 Aligned_cols=257 Identities=15% Similarity=0.070 Sum_probs=123.6
Q ss_pred HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607 385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF 462 (677)
Q Consensus 385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 462 (677)
+..|. .....+|.++...|++++|++++++.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34454 23346799999999999999999766544 478899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC--CCcHHHH
Q psy16607 463 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG--LYNAELF 540 (677)
Q Consensus 463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 540 (677)
..++.+ ...+++++|+.+++++++..++ +..+.....++. ..++++++...+.++.... +.++..|
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~~---~~~l~~~l~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 149 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDGD---PRYLLSALQLYY--------RLGDYDEAEELLEKLEELPAAPDSARFW 149 (280)
T ss_dssp ----------------------------------------H-HH--------HTT-HHHHHHHHHHHHH-T---T-HHHH
T ss_pred cccccc-cccccccccccccccccccccc---cchhhHHHHHHH--------HHhHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 888888 7999999999999999887765 555666666776 8899999999999987655 6788999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
..+|.++.+.|++++|+.+|+++++ .+|++..++..++.++. ..|+++++...++....
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li-------------------~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLI-------------------DMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH-------------------HCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999998 99999999999999888
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
..|.++..+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999999999999999999974
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=4.9e-18 Score=178.82 Aligned_cols=298 Identities=11% Similarity=-0.040 Sum_probs=243.7
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHc
Q psy16607 293 YLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDI--EAFIRMIRVYIRL 370 (677)
Q Consensus 293 ~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~la~~~~~~ 370 (677)
..-|.+.+..|+++.|.+.+.++.+..|. ....+...|.+....|++++|..++.++.+..|+. .+....+.++...
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 34456667789999999999999988753 34444678999999999999999999999988843 4566679999999
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHH----HHHHHHHhCCChHHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA----CIGVNHFYNDQPEVALL 446 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~ 446 (677)
|++++|...++++++..|+++.++..++.++...|++++|.+.+.+..+....+...+. ....-+...+..+++.+
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999987554433322 22222234444555666
Q ss_pred HHHHHHHcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHH--HHHHHHHHHhhhcccccCCCHH
Q psy16607 447 FYRRLLQMGL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW--YNISHVAILNALSTSVYNDQPE 520 (677)
Q Consensus 447 ~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~l~~~~~l~~l~~~~~~~~~~ 520 (677)
.+.++....| +++.++..++..+...|++++|.+.++++++..|++ .... ........ ..++.+
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~--~~~~~~~l~~~~~l--------~~~~~~ 316 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD--RAISLPLCLPIPRL--------KPEDNE 316 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc--ccchhHHHHHhhhc--------CCCChH
Confidence 7888888777 589999999999999999999999999999999987 3221 11112222 568889
Q ss_pred HHHHHHHHHHHcCCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607 521 VALLFYRRLLQMGLYNA--ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS 598 (677)
Q Consensus 521 ~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 598 (677)
.+++.++++++..|+++ .....+|.++.+.|++++|.++|+++......|+... +..+|.++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~-------------- 381 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD-------------- 381 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH--------------
Confidence 99999999999999999 8899999999999999999999995333226787766 458999998
Q ss_pred hhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 599 YLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 599 ~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
+.|+.++|.++|++++..
T Consensus 382 -----~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 382 -----QAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred -----HcCCHHHHHHHHHHHHHH
Confidence 999999999999998653
No 51
>KOG0548|consensus
Probab=99.85 E-value=1.2e-18 Score=174.11 Aligned_cols=336 Identities=13% Similarity=0.107 Sum_probs=261.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
-..|...+..|+|+.|+.+|..++.++| +...+.+...+|..+|+|++|+.--.+.++++|.-+..|..+|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 4578889999999999999999999999 788889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC-----------------C-------hHHHHHHHHHHHHcCCCC----
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYND-----------------Q-------PEVALLFYRRLLQMGLYN---- 458 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~-------~~~A~~~~~~al~~~~~~---- 458 (677)
|++|+..|.+.++.+|++......++.++.... + .+.+.....+.+..+|.+
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999999999999999888888877662220 0 000111111111111100
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Q psy16607 459 ----------------------------------------------------------AELFNNLALCCFYSQQYDMVVT 480 (677)
Q Consensus 459 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~ 480 (677)
......+|.......++..|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 0124578889999999999999
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHhccCH
Q psy16607 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE-------LFNNLALCCFYSQQY 553 (677)
Q Consensus 481 ~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~ 553 (677)
.|..+++++ .+ ...+.+.+.++. ..|.+.+.+....++++....... +...+|..+.+.+++
T Consensus 246 ~y~~a~el~-~~--it~~~n~aA~~~--------e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 246 HYAKALELA-TD--ITYLNNIAAVYL--------ERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HHHHHHhHh-hh--hHHHHHHHHHHH--------hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 999999999 65 788888999988 999999999888888866554332 334466778888999
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc----CCCCccc-chhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607 554 DMVVTCFERALSLALNENAADVWYNISHVAIITEC----SPFSFST-HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628 (677)
Q Consensus 554 ~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~----~p~~~~~-~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~ 628 (677)
+.|+.+|++++.....|+...-....-......+. .|..... ......+++.|+|..|+..|.+++..+|+++..
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 99999999999754444333222222111111111 1111111 122236679999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 629 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
|.++|.||.++|.+..|+...+++++++|+...+|..-|.+++.+-
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=2.2e-19 Score=196.05 Aligned_cols=251 Identities=11% Similarity=0.064 Sum_probs=184.0
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChH
Q psy16607 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL---------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 442 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 442 (677)
.+++|+..|+++++.+|++..++..+|.++... +++++|+..++++++++|++..++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456777777777777777777777777766533 33678888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHH
Q psy16607 443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVA 522 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A 522 (677)
+|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+ ...+..++.++. ..|++++|
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~--------~~g~~eeA 425 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--AAAGITKLWITY--------YHTGIDDA 425 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHH--------hccCHHHH
Confidence 88888888888888888888888888888888888888888888888876 555555554454 66788888
Q ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607 523 LLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601 (677)
Q Consensus 523 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~ 601 (677)
+..+++++... |+++..+..+|.++...|++++|...+.+... ..|....++..++..|.
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~----------------- 486 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYC----------------- 486 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHh-----------------
Confidence 88888887664 67777788888888888888888888888766 66777777777777766
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
..| ++|...+++.++.......-......++.-.|+.+.+... +++.+.+
T Consensus 487 --~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 --QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 3666666665554322222223377777778887777777 6665543
No 53
>KOG4162|consensus
Probab=99.85 E-value=5.3e-18 Score=175.82 Aligned_cols=373 Identities=17% Similarity=0.117 Sum_probs=219.9
Q ss_pred hhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--C-CH
Q psy16607 281 LAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--T-DI 357 (677)
Q Consensus 281 ~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~ 357 (677)
...+...+.+... +.+.....|+++.+.+.|++++...-.....| +.++.++...|.-..|+.+.+..+... | ++
T Consensus 316 ~~~~qnd~ai~d~-Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w-~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDH-LTFALSRCGQFEVLAEQFEQALPFSFGEHERW-YQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HhhhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH-HHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 3344434444433 34445567888888888888876653333344 678888888888778888888877766 4 44
Q ss_pred HHHHHHHHH-HHHcCChHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHh
Q psy16607 358 EAFIRMIRV-YIRLDQPIRAIDIGRNALDCYP-----NEVTIMTEMARIFEGLN-----------NMPMSVKYYKLILKR 420 (677)
Q Consensus 358 ~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 420 (677)
..+...+.+ +.+.+..++++.+..+++.... -.+..+..+|.+|..+- ...++++.++++++.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 444444443 3456777777777777776321 12345566666654321 245677777777777
Q ss_pred CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc---h--
Q psy16607 421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN---A-- 494 (677)
Q Consensus 421 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~-- 494 (677)
+|+|+.+.++++.-|...++.+.|+.+.+++++. ..+++..|..++.++...+++.+|+...+.++...+++. +
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 7777777777777777777777777777777777 455677777777777777777777777777776665530 0
Q ss_pred ----------HHHHHHHHHHHHHhh----------------h--cccccCCCHHHHHHHHHHHHHc--------------
Q psy16607 495 ----------ADVWYNISHVAILNA----------------L--STSVYNDQPEVALLFYRRLLQM-------------- 532 (677)
Q Consensus 495 ----------~~~~~~l~~~~~l~~----------------l--~~~~~~~~~~~A~~~~~~al~~-------------- 532 (677)
..+.-.+...+.++. + +-....++..+|++.++++...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 001111111111111 0 0011222334444444333210
Q ss_pred -------CCCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhh
Q psy16607 533 -------GLYN-----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL 600 (677)
Q Consensus 533 -------~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~ 600 (677)
.|+. ...|...+..+...+..++|..++.++-. ..|..+..|+..|.++.
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~---------------- 695 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLE---------------- 695 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHH----------------
Confidence 0111 24555556666666666666666666655 55666666666666665
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST--YLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 601 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
..|+.++|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.+.|++
T Consensus 696 ---~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 696 ---VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred ---HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 66666666666666666666666666666666666665555555 66666666666666666666666666553
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=8.9e-19 Score=191.38 Aligned_cols=261 Identities=12% Similarity=0.027 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCcHH
Q psy16607 326 WKVQLGKCYFSL---GLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL---------DQPIRAIDIGRNALDCYPNEVT 392 (677)
Q Consensus 326 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 392 (677)
.++..|..+... +.+++|+..|+++++.+| +..++..+|.++... +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 345666655443 457899999999999999 888999999887643 3489999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 472 (677)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877778788889
Q ss_pred CCHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q psy16607 473 QQYDMVVTCFERALSLA-LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 551 (677)
Q Consensus 473 g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 551 (677)
|++++|+..+++++... |++ +..+..+|.++. ..|++++|...+.+.....|.+...+..++..+...|
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~--~~~~~~la~~l~--------~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDN--PILLSMQVMFLS--------LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred cCHHHHHHHHHHHHHhccccC--HHHHHHHHHHHH--------hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 99999999999999875 665 888999999998 8999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 552 QYDMVVTCFERALSLA-LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 552 ~~~~A~~~~~~al~~~-~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
++|...+++.++.. ..+.+. .....++. -.|+-+.+... +++.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~-------------------~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNP---GLLPLVLV-------------------AHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCc---hHHHHHHH-------------------HHhhhHHHHHH-HHhhcc
Confidence 47888787766521 112222 22455554 67777777666 666554
No 55
>PLN03077 Protein ECB2; Provisional
Probab=99.85 E-value=1.3e-17 Score=193.27 Aligned_cols=317 Identities=9% Similarity=-0.000 Sum_probs=271.3
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID 378 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 378 (677)
+...|++++|.+++..+.+.....+...+..+...|.+.|++++|.+.|+++.+ ++..+|..+...|.+.|++++|+.
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 556799999999999999887666777778899999999999999999998753 467788899999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
.|+++....+.+...+..+...+.+.|+.+.+.+.+..+++..-. +......+...|.+.|+.++|...|+.. +.
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~ 552 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK 552 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC
Confidence 999998765567777888888899999999999999998886543 4556678889999999999999999886 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC--
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSL--ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-- 533 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-- 533 (677)
+...|+.+...|...|+.++|+..|+++.+. .|+ ...+..+...+. +.|+.++|.++|+.+.+..
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd---~~T~~~ll~a~~--------~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD---EVTFISLLCACS--------RSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---cccHHHHHHHHh--------hcChHHHHHHHHHHHHHHhCC
Confidence 7889999999999999999999999999875 354 445555555666 8899999999999998443
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
..+...|..+..++.+.|++++|.+.++++- ..|+ ..+|..+-..+. ..|+.+.+..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd-~~~~~aLl~ac~-------------------~~~~~e~~e~ 678 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD-PAVWGALLNACR-------------------IHRHVELGEL 678 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC-HHHHHHHHHHHH-------------------HcCChHHHHH
Confidence 2345789999999999999999999999863 4455 566776666666 8999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
..++++++.|++...+..++.+|...|++++|.+..+.+.+.
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999988763
No 56
>KOG4162|consensus
Probab=99.85 E-value=1.3e-17 Score=172.91 Aligned_cols=344 Identities=15% Similarity=0.082 Sum_probs=288.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhC--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHH
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKAC--EFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRV 366 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~ 366 (677)
.+..+...|.-..|+.+.+...... |......+..-..|....|.+++++.+..+++.... .+..+..+|.+
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~ 442 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA 442 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 3444555688899999999999877 444444434444566778999999999999998332 56788888888
Q ss_pred HHHcC-----------ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-cCCHHHHHHHHHH
Q psy16607 367 YIRLD-----------QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVN 434 (677)
Q Consensus 367 ~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 434 (677)
|..+- ...++++.++++++.+|.|+.+.+.++.-|...++.+.|++..+++++++ .+++.+|..++.+
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv 522 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV 522 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 86542 25689999999999999999999999999999999999999999999995 4579999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH-------------
Q psy16607 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI------------- 501 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l------------- 501 (677)
+...+++.+|+.+.+.++...++|-........+-...++.++|+..+...+..-... ..+-..+
T Consensus 523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~--~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE--YGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh--hhHhhhhhhhhhhhhhcccc
Confidence 9999999999999999999999998888888888888999999999999988775432 1111000
Q ss_pred -----------------HHHHH-Hhhh------------------------------cccccCCCHHHHHHHHHHHHHcC
Q psy16607 502 -----------------SHVAI-LNAL------------------------------STSVYNDQPEVALLFYRRLLQMG 533 (677)
Q Consensus 502 -----------------~~~~~-l~~l------------------------------~~~~~~~~~~~A~~~~~~al~~~ 533 (677)
+.+.. ...+ ..+...++.++|..++.++-.++
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 00000 0000 01334567788999999999999
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
|..+..|+..|.++...|+.++|.+.|..++. .+|+++.+...+|.++. +.|+..-|..
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll-------------------e~G~~~la~~ 739 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL-------------------ELGSPRLAEK 739 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH-------------------HhCCcchHHH
Confidence 99999999999999999999999999999999 99999999999999999 9998888887
Q ss_pred --HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 614 --CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 614 --~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
.+..+++++|.++++|+.+|.++.+.|+.++|.++|..++++.+.+|-
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999999988874
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=2e-17 Score=173.31 Aligned_cols=293 Identities=10% Similarity=0.013 Sum_probs=161.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCC
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRM-IRVYIRLDQPIRAIDIGRNALDCYPNEVT-IMTEMARIFEGLNN 406 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~ 406 (677)
..|......|++++|.+...+..+..+++..++.+ +.+....|+++.|..++.++.+.+|++.. .....+.++...|+
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC
Confidence 34444445566666665555544433333333333 33335666666666666666665555432 22233556666666
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH--------HHHHHHHHcCCHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN--------NLALCCFYSQQYDMV 478 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~la~~~~~~g~~~~A 478 (677)
+++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+.++.... .+........+-+..
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 666666666666666666666666666666666666666666665555444332211 111111111222222
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607 479 VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 479 ~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
.+.++......|++ +.++..++..+. ..|+.++|...++++++. +.++......+.+ ..++++++++
T Consensus 249 ~~~w~~lp~~~~~~--~~~~~~~A~~l~--------~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~ 315 (398)
T PRK10747 249 KRWWKNQSRKTRHQ--VALQVAMAEHLI--------ECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEK 315 (398)
T ss_pred HHHHHhCCHHHhCC--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHH
Confidence 33333332333334 556666666665 666666666666666663 3344333333332 3366666777
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607 559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638 (677)
Q Consensus 559 ~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 638 (677)
.+++.++ ..|+++..+..+|.++. ..|++++|.++|+++++..|++ ..+..++.++.+
T Consensus 316 ~~e~~lk--~~P~~~~l~l~lgrl~~-------------------~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~ 373 (398)
T PRK10747 316 VLRQQIK--QHGDTPLLWSTLGQLLM-------------------KHGEWQEASLAFRAALKQRPDA-YDYAWLADALDR 373 (398)
T ss_pred HHHHHHh--hCCCCHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence 7777666 66777777777777666 7777777777777777776664 334567777777
Q ss_pred cCCHHHHHHHHHHHHHhC
Q psy16607 639 EGHIERASTYLQAAAASS 656 (677)
Q Consensus 639 ~g~~~~A~~~~~~al~~~ 656 (677)
.|+.++|..+|++++.+.
T Consensus 374 ~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 374 LHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred cCCHHHHHHHHHHHHhhh
Confidence 777777777777776543
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2.7e-17 Score=172.22 Aligned_cols=293 Identities=11% Similarity=0.029 Sum_probs=236.9
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHcC
Q psy16607 294 LFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDI--EAFIRMIRVYIRLD 371 (677)
Q Consensus 294 l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~la~~~~~~g 371 (677)
.-|.+.+..|++++|.+...+..+.. +.....+...+......|+++.|..+|.++.+..|+. ......+.++...|
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 44556666899999998888876654 2233333445667699999999999999999988843 33445699999999
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH--------HHHHHHHHhCCChHH
Q psy16607 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI--------ACIGVNHFYNDQPEV 443 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~~g~~~~ 443 (677)
++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+.+.... ..+........+.+.
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999999999999999999999988776543322 222222223334445
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHH
Q psy16607 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVAL 523 (677)
Q Consensus 444 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~ 523 (677)
..+.++..-...|+++.++..++..+...|+.++|...++++++..++ .......+.+ ..++.++++
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~---~~l~~l~~~l----------~~~~~~~al 314 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD---ERLVLLIPRL----------KTNNPEQLE 314 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHhhc----------cCCChHHHH
Confidence 555555555566789999999999999999999999999999996554 4333333332 459999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
+.+++.++..|+++..+..+|.++...+++++|..+|+++++ ..|++.. +..++.++.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~-~~~La~~~~------------------- 372 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYD-YAWLADALD------------------- 372 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH-HHHHHHHHH-------------------
Confidence 999999999999999999999999999999999999999999 7788655 557899988
Q ss_pred cCCCHHHHHHHHHHHHccC
Q psy16607 604 GISDTRLAIQCLHLALSID 622 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~ 622 (677)
+.|+.++|.++|++++.+.
T Consensus 373 ~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HcCCHHHHHHHHHHHHhhh
Confidence 9999999999999998754
No 59
>KOG1125|consensus
Probab=99.83 E-value=3.7e-19 Score=179.16 Aligned_cols=247 Identities=17% Similarity=0.244 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
+..|..+++.|...+|.-.|+.+++.+| +.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 5789999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHH-------HHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIAC-------IGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDM 477 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~ 477 (677)
-.+|++++.+-+...|........ ...-......+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888743211100 00001111123345566777777777 789999999999999999999
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q psy16607 478 VVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 557 (677)
Q Consensus 478 A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 557 (677)
|+.||+.||...|++ ...|..+|..+. ...+.++|+..|++++++.|....++++||.++..+|.|++|+
T Consensus 449 aiDcf~~AL~v~Pnd--~~lWNRLGAtLA--------N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND--YLLWNRLGATLA--------NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHHHhcCCch--HHHHHHhhHHhc--------CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999999999 999999999998 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---cc-----hHHHHHHHHHHHH
Q psy16607 558 TCFERALSLALN---EN-----AADVWYNISHVAI 584 (677)
Q Consensus 558 ~~~~~al~~~~~---p~-----~~~~~~~l~~~~~ 584 (677)
++|-.++.+... +. +..+|..|-.++.
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 999999985322 11 1246666666555
No 60
>KOG1125|consensus
Probab=99.83 E-value=2.5e-19 Score=180.36 Aligned_cols=259 Identities=14% Similarity=0.097 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 438 (677)
--+..|..+++.|++.+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNN-------LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS 511 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~ 511 (677)
|.-.+|+.++.+-+...|........ ...-+.....+..-.+.|-.+....|....+++...||.+|.
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~----- 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN----- 441 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-----
Confidence 99999999999999877543211110 000011112233445666677777773223999999999998
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607 512 TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591 (677)
Q Consensus 512 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~ 591 (677)
-.|++++|+.+|+.++...|++...|+.||-.+....+.++|+..|.+|++ +.|....+++++|.+++
T Consensus 442 ---ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~m------- 509 (579)
T KOG1125|consen 442 ---LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCM------- 509 (579)
T ss_pred ---cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhh-------
Confidence 899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC----------hHHHHHHHHHHHHcCCHHHHH
Q psy16607 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH----------GLSQNNLAVLEAREGHIERAS 646 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~ 646 (677)
.+|.|++|+++|-.++.+.+.. ..+|..|=.++...++.+-+.
T Consensus 510 ------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 510 ------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9999999999999999986641 246766666677777766443
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=1.6e-18 Score=173.71 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHcCC---C-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYP---N-EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 446 (677)
++.+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445556666666664322 1 244566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
.|+++++++|++..++.++|.++...|++++|+..|+++++.+|++
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666666666666666666666666666666654
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=7.4e-18 Score=168.95 Aligned_cols=155 Identities=12% Similarity=-0.032 Sum_probs=119.6
Q ss_pred HHHHcCCHHHHHHHHHHHHccC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607 333 CYFSLGLIREAQQQFNSALNQF---T--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407 (677)
Q Consensus 333 ~~~~~g~~~~A~~~~~~al~~~---p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (677)
.....+..+.++..+.+++... | ....++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 3344466788888888888633 3 4567888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..|.++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888888888887632111 1223445677777777766554
Q ss_pred h
Q psy16607 488 L 488 (677)
Q Consensus 488 ~ 488 (677)
.
T Consensus 194 ~ 194 (296)
T PRK11189 194 K 194 (296)
T ss_pred h
Confidence 3
No 63
>KOG1127|consensus
Probab=99.80 E-value=1.2e-17 Score=176.75 Aligned_cols=349 Identities=15% Similarity=0.122 Sum_probs=278.1
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
+.+...|+..|-++++.++.-.+.+ ..+|..|....+...|.++|+++.++++ +..+....+..|.+..+++.|....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf-~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAF-AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3568889999999999995444444 7899999988899999999999999998 8999999999999999999999997
Q ss_pred HHHHHcCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 381 RNALDCYPNE--VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 381 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
-.+-+..|.. ...|..+|..|...+++..|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 7766666643 34577799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH-------H
Q psy16607 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL-------Q 531 (677)
Q Consensus 459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al-------~ 531 (677)
....+..+.+....|+|.+|+..+...+...... ......++.+++ +....+...|-..+|...+++.+ .
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e--~~~q~gLaE~~i-r~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE--RTGQNGLAESVI-RDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887665443 333333333332 11111112222222222222221 1
Q ss_pred cC----------------------C-----------------------------------------CcHHHHHHHHHHHH
Q psy16607 532 MG----------------------L-----------------------------------------YNAELFNNLALCCF 548 (677)
Q Consensus 532 ~~----------------------p-----------------------------------------~~~~~~~~la~~~~ 548 (677)
.. | .++..|+++|..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 11 0 01334666666665
Q ss_pred h--------ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 549 Y--------SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 549 ~--------~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
+ +.+...|+.+++++++ ...++...|..||.+ . ..|++.-|..+|-+.+.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-s-------------------g~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-S-------------------GIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-h-------------------ccchhhhhhhhhhhhhh
Confidence 4 1233467788888887 677777778888776 3 78999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
..|...-.|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+|
T Consensus 845 sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 845 SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988864
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=5.4e-17 Score=158.02 Aligned_cols=203 Identities=16% Similarity=0.136 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 470 (677)
...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.+++++...|.+...+..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 44555666666666666666666666666666555555666666666666666666666666655555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607 471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550 (677)
Q Consensus 471 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 550 (677)
..|++++|+..+++++...+. +.....+..+|.++...
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLY------------------------------------------PQPARSLENAGLCALKA 148 (234)
T ss_pred HcccHHHHHHHHHHHHhcccc------------------------------------------ccchHHHHHHHHHHHHc
Confidence 555555555555555543211 22334455555666666
Q ss_pred cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHH
Q psy16607 551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQN 630 (677)
Q Consensus 551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~ 630 (677)
|++++|...+++++. ..|++...+..++.++. ..|++++|+..+++++...|.++..+.
T Consensus 149 g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 149 GDFDKAEKYLTRALQ--IDPQRPESLLELAELYY-------------------LRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred CCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 666666666666665 55555566666666665 666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 631 NLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 631 ~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
.++.++...|+.++|..+.+.+....
T Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 208 LGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66666666677777666666655543
No 65
>KOG1156|consensus
Probab=99.79 E-value=3.6e-16 Score=159.29 Aligned_cols=367 Identities=12% Similarity=0.022 Sum_probs=255.5
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI 377 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 377 (677)
.+..++|.+.++..+.+++..| .....+...|..+...|+-++|....+.++..++ +...|..+|.++....+|++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 5667888899999998888775 3444447888888888999999999998888887 7788888899998889999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-- 455 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 455 (677)
++|+.++.+.|+|..+|.-++.+..++++++-....-.+.+++.|..-..|...+..+...|++..|....+...+..
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999888888888888888888888888888888999998888888777654
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH
Q psy16607 456 -LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529 (677)
Q Consensus 456 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a 529 (677)
|.....-......|..+-..+... ++++++..-.. .........+.++. +.+++++|...|...
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~~e~~i~Dkla~~e~ka~l~~--------kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLDNEKQIVDKLAFEETKADLLM--------KLGQLEEAVKVYRRL 245 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHhhhhHHHHHHHHhhhHHHHHH--------HHhhHHhHHHHHHHH
Confidence 333333333333333333232222 44444433222 11122233445555 889999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHh-----------------------------------------
Q psy16607 530 LQMGLYNAELFNNLALCCFYSQQYDMVV-TCFERALSLA----------------------------------------- 567 (677)
Q Consensus 530 l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~----------------------------------------- 567 (677)
+..+|++...+..+-.++.+-.+.-+++ ..|...-+..
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 9999999998888888876333334444 3333222100
Q ss_pred -----hccchHHHHHHHHHHHHHh-hc--------CCCCcccchhhhH-------HhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607 568 -----LNENAADVWYNISHVAIIT-EC--------SPFSFSTHTSYLF-------IQGISDTRLAIQCLHLALSIDSSHG 626 (677)
Q Consensus 568 -----~~p~~~~~~~~l~~~~~~~-~~--------~p~~~~~~~~~~~-------l~~~g~~~~A~~~~~~al~~~p~~~ 626 (677)
.+|......-.++.-|... .. .....++....|. +...|+++.|..+++.++...|.-.
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 0000000111111111100 00 0011244555663 3389999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
+.+...|.++...|++++|...++.+.+++-.|.-.-..-|.-..++.+|
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999866654443445544444443
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=5.7e-17 Score=157.86 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=181.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
....+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.|+++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc
Q psy16607 436 FYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~ 513 (677)
...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|.+ ...+..++.++.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~------- 180 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELYY------- 180 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHH-------
Confidence 99999999999999999854 4566788889999999999999999999999998887 778888888887
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 181 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 181 -LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888887776654
No 67
>KOG0550|consensus
Probab=99.79 E-value=3.2e-17 Score=158.38 Aligned_cols=342 Identities=15% Similarity=0.123 Sum_probs=263.5
Q ss_pred HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHH
Q psy16607 298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A 376 (677)
.++...+|.+|+..+..+++.+|.+...| ...+-+++..|+|++|....++.+++.+ ........+.++..+++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy-~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYY-SNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhh-chhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 35667899999999999999998775555 7999999999999999999999999888 677888888888888888777
Q ss_pred HHHHHHHH------------HcC------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607 377 IDIGRNAL------------DCY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 377 ~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 438 (677)
.+.++..- .+. |....+....+.++...|++++|...--..+++++.+.++++..|.+++..
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 76654211 011 333445667889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHH
Q psy16607 439 DQPEVALLFYRRLLQMGLYNA------------ELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHV 504 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~ 504 (677)
++.+.|+.+|++++.++|++. ..+...|.-.++.|++.+|.++|..+|.++|++ ..+..+.+++.+
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 999999999999999999865 356777899999999999999999999999998 456667888888
Q ss_pred HHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
.. ..|+..+|+.....++++++....++...|.|+..+++|++|++.|+++++...++.....+......+.
T Consensus 297 ~~--------rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 297 NI--------RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hc--------ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 87 9999999999999999999999999999999999999999999999999995544444444444333332
Q ss_pred HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh-------H-HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG-------L-SQNNLAVLEAREGHIERASTYLQAA 652 (677)
Q Consensus 585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~-------~-~~~~la~~~~~~g~~~~A~~~~~~a 652 (677)
.-++.+. ...+.+-....+.+--..+-+.+|...|+-. + -+...|..|...+++.++.+...-.
T Consensus 369 kSkRkd~----ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 369 KSKRKDW----YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HhhhhhH----HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 0000000 0000000111111222223344555555421 2 2456788888888888888776443
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=7.1e-17 Score=144.88 Aligned_cols=207 Identities=16% Similarity=0.080 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 471 (677)
.+...+|.-|...|++..|.+.++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607 472 SQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 550 (677)
+|++++|...|++++.. |.. ..+..+.++|.|.. +.|+.+.|...|+++++.+|+.+.....++..++..
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal--------~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCAL--------KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHh--------hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 88888888888888764 322 34778888888887 888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607 551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628 (677)
Q Consensus 551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~ 628 (677)
|+|..|..++++... .-+-..+.+.....+-. ..|+-+.+-++=.+.....|...+.
T Consensus 187 ~~y~~Ar~~~~~~~~--~~~~~A~sL~L~iriak-------------------~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 187 GDYAPARLYLERYQQ--RGGAQAESLLLGIRIAK-------------------RLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ccchHHHHHHHHHHh--cccccHHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHHhCCCcHHH
Confidence 888888888888776 33333443333333333 7888888877777777777776554
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.5e-16 Score=142.80 Aligned_cols=208 Identities=19% Similarity=0.139 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
..+...||.-|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++ .+++++.|..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--GDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--cchhhhhhHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHhhhcccccCCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607 505 AILNALSTSVYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 505 ~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~ 582 (677)
+. .+|++++|...|++++. ..+..+..|.++|.|..+.|+++.|..+|+++++ .+|+.+.....++..
T Consensus 113 LC--------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~ 182 (250)
T COG3063 113 LC--------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARL 182 (250)
T ss_pred HH--------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHH
Confidence 88 89999999999999985 3466778999999999999999999999999999 899999999999998
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
++ ..|+|-.|..++++...-.+-..+.+.....+-...|+-+.|-++=.+.....|...+.
T Consensus 183 ~~-------------------~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 183 HY-------------------KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HH-------------------hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88 99999999999999888877788888888888899999999999988888899988764
Q ss_pred H
Q psy16607 663 H 663 (677)
Q Consensus 663 ~ 663 (677)
.
T Consensus 244 q 244 (250)
T COG3063 244 Q 244 (250)
T ss_pred H
Confidence 3
No 70
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=2.1e-16 Score=157.77 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=179.0
Q ss_pred HHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH--H
Q psy16607 400 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY--D 476 (677)
Q Consensus 400 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~--~ 476 (677)
++...+++++|+..+.+++.++|.+..+|...+.++...| ++++++..++++++.+|.+..+|+.++.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3444566777777777777777777777777777777776 467777777777777777777777777777777663 5
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---cCH
Q psy16607 477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS---QQY 553 (677)
Q Consensus 477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~ 553 (677)
+++.+++++++.+|.+ ..+|...+.++. ..|+++++++++.++++.+|.+..+|+.++.++... |.+
T Consensus 126 ~el~~~~kal~~dpkN--y~AW~~R~w~l~--------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 126 KELEFTRKILSLDAKN--YHAWSHRQWVLR--------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHHHHHHHHHHhCccc--HHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 6777777888888777 777888887777 777788888888888888888888888887777665 223
Q ss_pred ----HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccCCCC
Q psy16607 554 ----DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSH 625 (677)
Q Consensus 554 ----~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~ 625 (677)
++++.+..+++. .+|++..+|..++.++. . .++..+|+..+.+++..+|.+
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFK-------------------DDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHh-------------------cCCcccccchhHHHHHHHhhcccCCc
Confidence 578888889998 89999999999999886 5 456778999999999999999
Q ss_pred hHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 626 GLSQNNLAVLEAREG------------------HIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 626 ~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
+.++..|+.+|.... ..++|..+++..-+.+|=-...|.
T Consensus 255 ~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 255 VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 999999999998642 346788888888666775544443
No 71
>KOG0550|consensus
Probab=99.76 E-value=3.7e-17 Score=157.91 Aligned_cols=255 Identities=14% Similarity=0.142 Sum_probs=172.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
...|..+++..+|.+|+..|..+++..| +...|...+.++...+++++|....++.+++.|.........+.++...++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 5678888888899999999999999888 788888899999999999999999999999998888888888999998888
Q ss_pred hhHHHHHHHHHH-----H-------h------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607 407 MPMSVKYYKLIL-----K-------R------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468 (677)
Q Consensus 407 ~~~A~~~~~~al-----~-------~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 468 (677)
..+|.+.++..- . + .|....+-..-+.++...|++++|...--..+++++.+.++++..|.+
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence 888887776321 0 0 022233445557777778888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc--ccccCCCHHHHHHHHHHHHHcCCCc----HHHHHH
Q psy16607 469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS--TSVYNDQPEVALLFYRRLLQMGLYN----AELFNN 542 (677)
Q Consensus 469 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~--~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 542 (677)
+...++.+.|+..|++++.++|+.......+.....+..+... ..++.|++.+|.++|..+|.++|++ +.+|.+
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 8888888888888888888887762222222222222111111 1344455555555555555555543 234445
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 543 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 543 la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
++.+..++|+..+|+...+.++. +++....++...|.|+.
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL 332 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence 55555555555555555555555 45555555555555555
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=4.9e-15 Score=139.04 Aligned_cols=273 Identities=15% Similarity=0.094 Sum_probs=236.1
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHc
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRL 370 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~ 370 (677)
|.-++..++.++|++.|..+++.+ +........+|..+...|..+.|+..-+..+.... ...++..+|.-|+..
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence 444555789999999999999988 56666778999999999999999999998887654 456889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVAL 445 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~ 445 (677)
|-++.|...|....+....-..++..+..+|....+|++|++.-++..++.+.. ...++.++..+....+.+.|+
T Consensus 121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999988766677899999999999999999999999999998865 456788899999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF 525 (677)
Q Consensus 446 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~ 525 (677)
..+.++++.+|....+-..+|.++...|+|++|++.++.+++.+|+. .+.+...+..+|. ..|+.++.+..
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~--------~lg~~~~~~~f 271 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYA--------QLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH--------HhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 6778888999998 99999999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581 (677)
Q Consensus 526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~ 581 (677)
+.++.+..+.. .+-..++..-....-.+.|..++.+-+. ..|.....+..+..
T Consensus 272 L~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 272 LRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 99999887654 4455566666667777888888888887 67876655554443
No 73
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=7.9e-16 Score=153.58 Aligned_cols=263 Identities=12% Similarity=0.057 Sum_probs=208.5
Q ss_pred CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHH
Q psy16607 338 GLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKL 416 (677)
Q Consensus 338 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 416 (677)
++|.+|..+|+.++ ...+++++|+..+.++++++|.+..+|..++.++..+| ++++++..+.+
T Consensus 34 ~~~~~a~~~~ra~l----------------~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 34 PEFREAMDYFRAVY----------------ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 55667777777654 34578889999999999999999999999999999998 67999999999
Q ss_pred HHHhCcCCHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccch
Q psy16607 417 ILKRDATCMEAIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 494 (677)
Q Consensus 417 al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 494 (677)
++..+|++..+|...+.++...|+. ++++.+++++++.+|.+..+|..++.++...|+++++++++.++++.+|.+
T Consensus 98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-- 175 (320)
T PLN02789 98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-- 175 (320)
T ss_pred HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--
Confidence 9999999999999999998888874 778999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhcccccC---CC----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYN---DQ----PEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERA 563 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~---~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 563 (677)
..+|+.++.+.. .. |. .++++.+..+++..+|++..+|+.++.++.. .++..+|+..+.++
T Consensus 176 ~sAW~~R~~vl~--------~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVIT--------RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHH--------hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 999999998875 33 22 3578889999999999999999999999988 45677899999998
Q ss_pred HHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhh-HHhcCCCHHHHHHHHHHHHccCCCChHHHH
Q psy16607 564 LSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL-FIQGISDTRLAIQCLHLALSIDSSHGLSQN 630 (677)
Q Consensus 564 l~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~-~l~~~g~~~~A~~~~~~al~~~p~~~~~~~ 630 (677)
+. .+|..+.++..++.+|.... .+. .+...... .-......++|...++..-+.+|--...|.
T Consensus 248 ~~--~~~~s~~al~~l~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 248 LS--KDSNHVFALSDLLDLLCEGL-QPT-AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hc--ccCCcHHHHHHHHHHHHhhh-ccc-hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 88 78999999999999986100 000 00000000 000111346788888877666664444444
No 74
>KOG1127|consensus
Probab=99.75 E-value=5.4e-16 Score=164.37 Aligned_cols=344 Identities=13% Similarity=0.050 Sum_probs=277.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CHHHHHHHHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT---DIEAFIRMIRVY 367 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~ 367 (677)
+...+|.+|...-+...|..+|+++.+.++.....+ -..+..|....++++|....-.+-+..| ....|..+|..|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaa-aa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAA-AASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhH-HHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 555678888777899999999999999996544444 6889999999999999999777777776 456777899999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 447 (677)
...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.-..+..+.+...+|.|.+|+..
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----------------------------c-
Q psy16607 448 YRRLLQMGLYNA-------ELFNNLALCCFYSQQYDMVVTCFERALSLA-----------------------------L- 490 (677)
Q Consensus 448 ~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------------------p- 490 (677)
+...+....... +.+...+..+.-.|-+.+|..+++++++.. |
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~ 732 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS 732 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc
Confidence 988876543332 333333333333444444444444432210 0
Q ss_pred ---------------------ccc-----------------hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607 491 ---------------------NEN-----------------AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532 (677)
Q Consensus 491 ---------------------~~~-----------------~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~ 532 (677)
+++ .+..|+++|..+.-.-...---+.+...|+.++.+++++
T Consensus 733 ~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L 812 (1238)
T KOG1127|consen 733 IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL 812 (1238)
T ss_pred chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 000 023466666655410000000122345899999999999
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607 533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612 (677)
Q Consensus 533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~ 612 (677)
..++...|+.||.+ ...|.+.-|..+|-+.+. ..|.....|.++|.++. +..+++.|.
T Consensus 813 ~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l-------------------~n~d~E~A~ 870 (1238)
T KOG1127|consen 813 CANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVL-------------------ENQDFEHAE 870 (1238)
T ss_pred hhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEE-------------------ecccHHHhh
Confidence 99999999999999 677999999999999998 89999999999999998 999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 613 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
..|.++..++|.+...|...+.+....|+.-++...|....++..
T Consensus 871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 999999999999999999999999999999999999998655543
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=7.4e-15 Score=137.87 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=223.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-----VTIMTEMARIF 401 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 401 (677)
+..|.-+.-..+.++|+..|..+++.+| ..++...+|.++.+.|..+.|+.+.+..++. |+- .-++..+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 4567777778889999999999999888 7889999999999999999999988776654 432 34678889999
Q ss_pred HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHH
Q psy16607 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFYSQQYD 476 (677)
Q Consensus 402 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~ 476 (677)
+..|-++.|...|.........-..++-.|..+|....++++|++..++..++.+.. +..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999988877666667888889999999999999999999988887765 345677888888888888
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhccCHHH
Q psy16607 477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDM 555 (677)
Q Consensus 477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~ 555 (677)
.|...+.++++.+|++ ..+-..+|.+.. ..|+++.|++.++.+++.+|.. +++...|..||.+.|+.++
T Consensus 198 ~A~~~l~kAlqa~~~c--vRAsi~lG~v~~--------~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 198 RARELLKKALQADKKC--VRASIILGRVEL--------AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHHHHHHHHHhhCccc--eehhhhhhHHHH--------hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8999999999988888 788888888888 8888999999998888888875 4677778888888898888
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q psy16607 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 635 (677)
Q Consensus 556 A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 635 (677)
.+..+.++.+ ..++. .+-..++.... ...-.+.|..++.+-+...|.....+ .+-..
T Consensus 268 ~~~fL~~~~~--~~~g~-~~~l~l~~lie-------------------~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~ 324 (389)
T COG2956 268 GLNFLRRAME--TNTGA-DAELMLADLIE-------------------LQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDY 324 (389)
T ss_pred HHHHHHHHHH--ccCCc-cHHHHHHHHHH-------------------HhhChHHHHHHHHHHHhhCCcHHHHH-HHHHh
Confidence 8888888887 33322 22233333333 55566778888888888777643333 33222
Q ss_pred HH---HcCCHHHHHHHHHHHHH
Q psy16607 636 EA---REGHIERASTYLQAAAA 654 (677)
Q Consensus 636 ~~---~~g~~~~A~~~~~~al~ 654 (677)
.. ..|...+.+..++.++.
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hhccccccchhhhHHHHHHHHH
Confidence 22 23445566666665543
No 76
>KOG1840|consensus
Probab=99.74 E-value=2.1e-15 Score=156.78 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=198.5
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---- 454 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 454 (677)
.|.-..+...++..|...|+|++|+..++++++. .|.-......+|.+|...+++.+|+.+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666677888999999999999999999999988 4444455556999999999999999999999985
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc-----c-chHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607 455 ----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-----E-NAADVWYNISHVAILNALSTSVYNDQPEVALL 524 (677)
Q Consensus 455 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~ 524 (677)
+|....++.+++.+|...|++++|..++++++++... . .....+.+++.++. .++++++|+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--------~~~~~Eea~~ 346 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--------SMNEYEEAKK 346 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--------HhcchhHHHH
Confidence 2334578999999999999999999999999887533 1 23455667777776 8899999999
Q ss_pred HHHHHHHcC--------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHhhcCC
Q psy16607 525 FYRRLLQMG--------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL------NENAADVWYNISHVAIITECSP 590 (677)
Q Consensus 525 ~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~p~~~~~~~~l~~~~~~~~~~p 590 (677)
++++++++. +.-+..+.++|.+|..+|+|++|.++|++++.... .+.....+..+|..|.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~------ 420 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE------ 420 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH------
Confidence 999998542 23467889999999999999999999999998642 2233466778888888
Q ss_pred CCcccchhhhHHhcCCCHHHHHHHHHHHHcc----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSI----DS---SHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
+.+++.+|...|.++..+ .| +....+.+|+.+|..+|++++|+++.++++.
T Consensus 421 -------------~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 421 -------------ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -------------HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999988765 23 3456789999999999999999999999985
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=3.5e-14 Score=147.92 Aligned_cols=306 Identities=13% Similarity=-0.012 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607 322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEM 397 (677)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (677)
+....+..+|..+...|+.+++...+.++.+..+ ..+.....+.++...|++++|...++++++.+|.+..++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 3444556677777777777777777777666554 24455666777777777777777777777777777666554
Q ss_pred HHHHHHcCCh----hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607 398 ARIFEGLNNM----PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473 (677)
Q Consensus 398 a~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 473 (677)
+..+...|++ ..+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 4444444333 333333333223455555666677777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC--cHHHHH---HHHHH
Q psy16607 474 QYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFN---NLALC 546 (677)
Q Consensus 474 ~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~ 546 (677)
++++|+.++++++...|.+ .....+..++.++. ..|++++|+..|++++...|. ...... .+...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~--------~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL--------ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH--------HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 7777777777777766532 11234556677766 777777777777777655441 111111 11122
Q ss_pred HHhccCHHHHHHHHHHHHHHh--hccc--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 547 CFYSQQYDMVVTCFERALSLA--LNEN--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 547 ~~~~g~~~~A~~~~~~al~~~--~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
+...|....+..+ +.+.... ..+. ........+.++. ..|+.++|...++......
T Consensus 235 ~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~-------------------~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 235 LELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALA-------------------GAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHh-------------------cCCCHHHHHHHHHHHHHHH
Confidence 2223322222222 1111100 1011 1111223444444 8888888888887765533
Q ss_pred CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 623 SS---------HGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 623 p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
.. ........+.++...|++++|+..+..++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 295 SSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 23456678889999999999999999999865
No 78
>KOG1156|consensus
Probab=99.71 E-value=9.9e-14 Score=141.80 Aligned_cols=342 Identities=14% Similarity=0.060 Sum_probs=265.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR 369 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 369 (677)
...+.|..+...|+-++|......++..++.+..-| ..+|.++....+|++|+++|+.++...| +..++.-++.+..+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw-Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW-HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccchhH-HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 345667777888999999999999999997777777 6999999999999999999999999999 89999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC---cCC-----HHHHHHHHHHHHhCCCh
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD---ATC-----MEAIACIGVNHFYNDQP 441 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~ 441 (677)
+++++-....-.+.++..|.....|...+..+...|++..|....+...+.. |+. .+.......++...|.+
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999999999999999999999999999999999999999888776654 322 34455566777888888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--------H----hh
Q psy16607 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI--------L----NA 509 (677)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~--------l----~~ 509 (677)
++|++.+..--...-+........+.++.+++++++|+..|...+..+|++ ...+..+-.++. + ..
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn--~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN--LDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh--HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888887766544444445566677899999999999999999999999987 433333322221 0 00
Q ss_pred hcc-------------cccCC-CHHHHH-----------------------------HHHHHHH-------Hc-------
Q psy16607 510 LST-------------SVYND-QPEVAL-----------------------------LFYRRLL-------QM------- 532 (677)
Q Consensus 510 l~~-------------~~~~~-~~~~A~-----------------------------~~~~~al-------~~------- 532 (677)
+.+ .+-.| ++.+.+ ...++.+ ..
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 000 00000 011110 0112211 00
Q ss_pred -----CCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607 533 -----GLYNA--ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605 (677)
Q Consensus 533 -----~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~ 605 (677)
.|... ..++.++.-+...|+++.|..+++.|+. ..|...+.+...+.++. ..
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~k-------------------H~ 418 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFK-------------------HA 418 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHH-------------------hc
Confidence 02222 2345678888999999999999999999 88999999999999998 99
Q ss_pred CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
|++++|...++++.+++-.+...-..-|....+.++.++|.+...+.-+..
T Consensus 419 G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred CChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999999999999987766555578888899999999999887765544
No 79
>KOG1840|consensus
Probab=99.70 E-value=5.2e-15 Score=153.94 Aligned_cols=237 Identities=14% Similarity=0.111 Sum_probs=193.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcC----
Q psy16607 321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ--------FTDIEAF-IRMIRVYIRLDQPIRAIDIGRNALDCY---- 387 (677)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~---- 387 (677)
+........++..|..+|+|+.|+..|+.++.. .+..... ..+|.+|..++++.+|+.+|++++.+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444445567999999999999999999999987 3444444 459999999999999999999998753
Q ss_pred ----CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 388 ----PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA--------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 388 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
|.-..++.++|.+|...|++++|..++++++++.. .-...+..++.++..++++++|..++++++++.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33456788999999999999999999999988732 235567788999999999999999999998753
Q ss_pred -----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc------chHHHHHHHHHHHHHhhhcccccCCCHHH
Q psy16607 456 -----L---YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE------NAADVWYNISHVAILNALSTSVYNDQPEV 521 (677)
Q Consensus 456 -----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~ 521 (677)
+ .-+..+.++|.+|..+|++++|.+.|++++.+.... .+...+.+++..+. +.+++.+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~--------~~k~~~~ 427 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE--------ELKKYEE 427 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH--------Hhcccch
Confidence 2 335678999999999999999999999999876322 23566778888887 8899999
Q ss_pred HHHHHHHHHHc-------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 522 ALLFYRRLLQM-------GLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 522 A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
|...|.+++.+ .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99998888743 344556889999999999999999999999986
No 80
>KOG2376|consensus
Probab=99.69 E-value=7.2e-13 Score=134.18 Aligned_cols=406 Identities=13% Similarity=0.030 Sum_probs=253.6
Q ss_pred HHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCC
Q psy16607 124 VDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTA 203 (677)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (677)
.-+-+.++|++|+..|.++|..+|++..+..-|.-+|.+...+++.--. +..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~-------------ikk--------------- 71 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL-------------IKK--------------- 71 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH-------------HHh---------------
Confidence 4456779999999999999999999999999999999888766664210 000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhh
Q psy16607 204 PALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK 283 (677)
Q Consensus 204 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (677)
..+. . ....|. .
T Consensus 72 ---------~~~~-----------------------------------~----------------~~~~~~-f------- 83 (652)
T KOG2376|consen 72 ---------NGAL-----------------------------------L----------------VINSFF-F------- 83 (652)
T ss_pred ---------cchh-----------------------------------h----------------hcchhh-H-------
Confidence 0000 0 000000 0
Q ss_pred hhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHH
Q psy16607 284 YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIR 362 (677)
Q Consensus 284 ~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 362 (677)
--+||.++.+..++|+..++- .+ ..+...+...|.+++++|+|++|...|+..++.+. +.+....
T Consensus 84 ----------EKAYc~Yrlnk~Dealk~~~~---~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 84 ----------EKAYCEYRLNKLDEALKTLKG---LD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred ----------HHHHHHHHcccHHHHHHHHhc---cc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 135678889999999999992 22 22344457889999999999999999999988664 3222222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-------CC--------HH
Q psy16607 363 MIRVYIRLDQPIRAIDIGRNALDCYPN-EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-------TC--------ME 426 (677)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~--------~~ 426 (677)
........ -..+ . ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++++.. .+ ..
T Consensus 150 ~nl~a~~a--~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 150 ANLLAVAA--ALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHH--hhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 11111110 0011 1 2333334443 567888889999999999999999988854321 11 23
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH--------------------------------------------
Q psy16607 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF-------------------------------------------- 462 (677)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------------------- 462 (677)
....++.++..+|+.++|..+|...++.+|.+....
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788888889999999998888888766543211
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-
Q psy16607 463 -----NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN- 536 (677)
Q Consensus 463 -----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~- 536 (677)
.+.+.+.+..+.-+.+.+...+.-...|...+.......-.+ ....+.+|.+.+....+.+|.+
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~----------~~~~~~ka~e~L~~~~~~~p~~s 375 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKV----------REKKHKKAIELLLQFADGHPEKS 375 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH----------HHHHHhhhHHHHHHHhccCCchh
Confidence 111222222222222222222211122221111111111111 2236788888998888888887
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
..+...++.+....|+++.|+..+...+..- .-...+.+-..+-..+. +.++-+-|
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~-------------------~~~~~~~a 436 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYY-------------------KIKDNDSA 436 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHH-------------------hccCCccH
Confidence 6678889999999999999999998433210 00111222222223333 55555445
Q ss_pred HHHHHHHHc-------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 612 IQCLHLALS-------IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 612 ~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
...+.+++. ..+.....+...+....+.|+.++|...+++.++.+|++.+++..+...|..
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 555555443 3333445667778888888999999999999999999999999888877754
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=1.9e-13 Score=142.41 Aligned_cols=307 Identities=10% Similarity=-0.045 Sum_probs=218.6
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHH
Q psy16607 290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFR--DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRV 366 (677)
Q Consensus 290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~ 366 (677)
++...++.++...|+++.+...+.++.+..+.+ ........+.++...|++++|...+++++...| +..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 355566677777899999999999988777633 233446778899999999999999999999999 5555553 444
Q ss_pred HHHcC----ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChH
Q psy16607 367 YIRLD----QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 442 (677)
Q Consensus 367 ~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 442 (677)
+...| ....+...+......+|.....+..+|.++...|++++|+..++++++..|++..++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 44444 44445555444445667777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH-HHHHHHhhhcccccCC
Q psy16607 443 VALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI-SHVAILNALSTSVYND 517 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l-~~~~~l~~l~~~~~~~ 517 (677)
+|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|........... ...+. .. ..|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-----~~g 239 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR-LE-----LAG 239 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH-HH-----hcC
Confidence 99999999999876443 346689999999999999999999998766622112111122 11111 00 223
Q ss_pred CHHHHHHH--H-HHHHHcCC--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHH
Q psy16607 518 QPEVALLF--Y-RRLLQMGL--YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-------NAADVWYNISHVAII 585 (677)
Q Consensus 518 ~~~~A~~~--~-~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-------~~~~~~~~l~~~~~~ 585 (677)
....+..+ . .......+ .........+.++...|+.++|...++......... .........+.++.
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~- 318 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF- 318 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH-
Confidence 22222222 1 11111112 122333467888899999999999999887643221 11233444555555
Q ss_pred hhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 586 ~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
..|++++|+..+..++...
T Consensus 319 ------------------~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 ------------------AEGNYATALELLGPVRDDL 337 (355)
T ss_pred ------------------HcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 82
>KOG1915|consensus
Probab=99.65 E-value=3e-12 Score=126.10 Aligned_cols=330 Identities=15% Similarity=0.114 Sum_probs=204.8
Q ss_pred cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
+......|..++++++..-|.-+..| +.....-..+|+...|.+.|++-+.-.|+..+|......-.+.+..+.|..+|
T Consensus 119 knk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455556666666666555555555 34444445556666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHHHHHHHHHhCCChHHHHHHH---------
Q psy16607 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFY--------- 448 (677)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~--------- 448 (677)
++-+-.+| +...|...+..-.+.|+..-|..+|+++++.-.++. ..+...|..-..+..++.|..+|
T Consensus 198 erfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 198 ERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 66666665 556677777777788888888888888876644321 11222222222233333333333
Q ss_pred -----------------------------------HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc
Q psy16607 449 -----------------------------------RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493 (677)
Q Consensus 449 -----------------------------------~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 493 (677)
+..++.+|.+-++|+..-.+-...|+.+.-.+.|++|+...|.-.
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 334445566667888888888888999999999999998777541
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q psy16607 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN 569 (677)
Q Consensus 494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 569 (677)
.-..|.....+++-..+...+...+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+. ..
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~c 434 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KC 434 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cC
Confidence 1222322222221111112246789999999999999988854 56777777777788888888888887777 45
Q ss_pred cchH--HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy16607 570 ENAA--DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 647 (677)
Q Consensus 570 p~~~--~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 647 (677)
|.+. ..+..+-. ++++++.....|++-++..|.+..+|...|.+-..+|+.+.|..
T Consensus 435 PK~KlFk~YIelEl----------------------qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 435 PKDKLFKGYIELEL----------------------QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred CchhHHHHHHHHHH----------------------HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 5443 22222222 55666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhC
Q psy16607 648 YLQAAAASS 656 (677)
Q Consensus 648 ~~~~al~~~ 656 (677)
+|+-|++..
T Consensus 493 ifelAi~qp 501 (677)
T KOG1915|consen 493 IFELAISQP 501 (677)
T ss_pred HHHHHhcCc
Confidence 666665543
No 83
>KOG3785|consensus
Probab=99.64 E-value=2.2e-13 Score=129.18 Aligned_cols=250 Identities=12% Similarity=0.039 Sum_probs=167.4
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy16607 290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIR 369 (677)
Q Consensus 290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~ 369 (677)
-...++++++++.|+|++|+..|.-+...+..+...+ .++|.|++..|.|.+|...-.++-+ ++-....+-.+..+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~-vnLAcc~FyLg~Y~eA~~~~~ka~k---~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG-VNLACCKFYLGQYIEAKSIAEKAPK---TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc-hhHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHH
Confidence 3566778888888888888888888877664444444 6888888888888888776666532 22222223333344
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
.++-++-...- ..++- ..+-...++.+++..-.|++|++.|++++..+|+....-..++.+|.++.-++-+.+++.
T Consensus 134 lndEk~~~~fh-~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 134 LNDEKRILTFH-SSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred hCcHHHHHHHH-HHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 55544333332 22221 224456677888888889999999999999999888788889999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------HHhhhccc--chHHHHH
Q psy16607 450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER----------------------------ALSLALNE--NAADVWY 499 (677)
Q Consensus 450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------------------al~~~p~~--~~~~~~~ 499 (677)
--+...|+++.+.+..+...++.=.-..|....+. +++.-|.- ..+++..
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 99999999998888887777664222222211111 12222211 1345566
Q ss_pred HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607 500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 500 ~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
++...|. .+++..+|+...+ +++|..|.-+...|.+....|+--...+
T Consensus 290 NL~iYyL--------~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 290 NLIIYYL--------NQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred hheeeec--------ccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 6666665 8888888887765 4688888888888888888776543333
No 84
>KOG1915|consensus
Probab=99.64 E-value=8e-12 Score=123.12 Aligned_cols=349 Identities=14% Similarity=0.143 Sum_probs=260.9
Q ss_pred HHHHHHHHHHHHhcc--cCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy16607 288 KTVAKYLFEYLYHHE--NDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIR 365 (677)
Q Consensus 288 ~~~a~~l~~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~ 365 (677)
|.+-..+..++|+.. |+..-|.++|++-+...|....| ......-.+.+..+.|...|++.+-..|++..|...+.
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW--~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar 215 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAW--LSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR 215 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH
Confidence 333444555555443 88888888888888887643333 45556666677788888888888877788888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCChhHHHHH-----------------------------
Q psy16607 366 VYIRLDQPIRAIDIGRNALDCYPNEVT---IMTEMARIFEGLNNMPMSVKY----------------------------- 413 (677)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~----------------------------- 413 (677)
.-.+.|+..-|...|.++++...++.. .+...|..-..+..++.|.-.
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 888888877777777777765544322 122222222233333333333
Q ss_pred ---------------HHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH---------HHHHHHHH-
Q psy16607 414 ---------------YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---------LFNNLALC- 468 (677)
Q Consensus 414 ---------------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~la~~- 468 (677)
|++.++.+|.+.++|+..-.+....|+.+.-.+.|++++...|...+ +|.+.+..
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 44445556778889999999999999999999999999998876432 23333322
Q ss_pred HHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607 469 CFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 546 (677)
Q Consensus 469 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 546 (677)
-....+.+.+.+.|+.++++-|.. .++..|...+...+ .+.+...|.+.+-.++...|.+ ..+.....+
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI--------Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIel 446 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI--------RQLNLTGARKILGNAIGKCPKD-KLFKGYIEL 446 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH--------HHcccHHHHHHHHHHhccCCch-hHHHHHHHH
Confidence 235688999999999999999987 67888999898888 8999999999999999999975 455566677
Q ss_pred HHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-
Q psy16607 547 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH- 625 (677)
Q Consensus 547 ~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~- 625 (677)
-.++++++....+|++-++ ..|.+..+|...|.+-. .+|+.+.|...|+-|+....-+
T Consensus 447 ElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~-------------------~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELET-------------------SLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHH-------------------HhhhHHHHHHHHHHHhcCccccc
Confidence 7889999999999999999 89999999999999988 9999999999999999865443
Q ss_pred hH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 626 GL-SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 626 ~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
++ .|-.....-...|.++.|..+|++.++..+... .|...|..
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f 549 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF 549 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence 32 344455566778999999999999999987765 66665543
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=1.5e-14 Score=128.05 Aligned_cols=128 Identities=15% Similarity=0.025 Sum_probs=120.8
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHH
Q psy16607 523 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFI 602 (677)
Q Consensus 523 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l 602 (677)
...++++++.+|++ +..+|.++...|++++|+.+|++++. .+|.+..+|..+|.++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~------------------ 69 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWM------------------ 69 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHH------------------
Confidence 46788999999875 66789999999999999999999999 89999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
..|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++++.|+++..+.+++.+....+
T Consensus 70 -~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 70 -MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred -HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876654
No 86
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.3e-11 Score=120.07 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=229.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCCh
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQP 373 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~ 373 (677)
|..-+..|+|.+|.+...+.-+.. +.....+..-+.+-...|+++.|-.++.++-+.. ++.......+.+....|++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 334455799999999999988777 3444444566788888999999999999999984 4778889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH---HHHHHH--HHHhCCCh---HHHH
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA---IACIGV--NHFYNDQP---EVAL 445 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~--~~~~~g~~---~~A~ 445 (677)
+.|.....++++..|.++.++.....+|.+.|++.+......+.-+..--+.+- +-+.+. ++.+..+- +.-.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999999999999999999999999999998877654432211 111111 11222222 2222
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF 525 (677)
Q Consensus 446 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~ 525 (677)
.+++..-..-..++.+...++.-+..+|++++|.+..+.+++..-++ .....++. +..++++.=++.
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~----------l~~~d~~~l~k~ 316 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR----------LRPGDPEPLIKA 316 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh----------cCCCCchHHHHH
Confidence 24444333444568888899999999999999999999999987764 32222222 267999999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605 (677)
Q Consensus 526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~ 605 (677)
.++.++..|+++..+..||..+.+.+.|.+|..+|+.+++ . ......+..+|.++. +.
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~-~~s~~~~~~la~~~~-------------------~~ 374 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--L-RPSASDYAELADALD-------------------QL 374 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--c-CCChhhHHHHHHHHH-------------------Hc
Confidence 9999999999999999999999999999999999999997 3 345667888999998 99
Q ss_pred CCHHHHHHHHHHHHcc
Q psy16607 606 SDTRLAIQCLHLALSI 621 (677)
Q Consensus 606 g~~~~A~~~~~~al~~ 621 (677)
|+..+|.+.+++++.+
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998853
No 87
>KOG2376|consensus
Probab=99.60 E-value=2.8e-11 Score=122.86 Aligned_cols=456 Identities=11% Similarity=0.043 Sum_probs=270.4
Q ss_pred CCCCCCCCCcccchHHHH-HHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccccccchhhhhccch
Q psy16607 1 MSTPGSAPTATVDSMFYA-VDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTN 79 (677)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (677)
||.-++--.+.+..+|.- ..+.+.++|++|...|++||.+.|++..+.+-|.-|+++...+++.- .+ |.-+
T Consensus 1 ms~~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL-------k~-ikk~ 72 (652)
T KOG2376|consen 1 MSKEKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL-------KL-IKKN 72 (652)
T ss_pred CCCcccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH-------HH-HHhc
Confidence 444333333333444443 45678899999999999999999999999999999999866665532 01 1111
Q ss_pred hhhccCCCCcccccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhh
Q psy16607 80 TIATAARPGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRS 159 (677)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 159 (677)
++....+ .=.|-.|.++|+.|+.|+|+..++ -.++.+.....++++.
T Consensus 73 -------~~~~~~~-----------------------~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 73 -------GALLVIN-----------------------SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQV 119 (652)
T ss_pred -------chhhhcc-----------------------hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHH
Confidence 1211110 011568999999999999999998 6677778888999999
Q ss_pred hhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhc
Q psy16607 160 LTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239 (677)
Q Consensus 160 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 239 (677)
+-+.+.+|++-.-...+..--.++ .+.-++
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd--------------------------------------------------~d~~~r 149 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDD--------------------------------------------------QDEERR 149 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCch--------------------------------------------------HHHHHH
Confidence 999988887522111110000000 000000
Q ss_pred CcccccccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhC
Q psy16607 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKAC 319 (677)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~ 319 (677)
..+...+..+ ...........+. .....+.... -++...|+|.+|+++++++++.+
T Consensus 150 ---------------~nl~a~~a~l-----~~~~~q~v~~v~e--~syel~yN~A--c~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 150 ---------------ANLLAVAAAL-----QVQLLQSVPEVPE--DSYELLYNTA--CILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred ---------------HHHHHHHHhh-----hHHHHHhccCCCc--chHHHHHHHH--HHHHhcccHHHHHHHHHHHHHHH
Confidence 0000000000 0001111111221 1222222222 22445799999999999995432
Q ss_pred c-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcC---Ch-H-HHHHH
Q psy16607 320 E-------FR-------DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLD---QP-I-RAIDI 379 (677)
Q Consensus 320 p-------~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g---~~-~-~A~~~ 379 (677)
. .+ ...+...++.++..+|+-++|...|...++.++ +........+-+.... ++ + .++..
T Consensus 206 ~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~ 285 (652)
T KOG2376|consen 206 REKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKS 285 (652)
T ss_pred HHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHH
Confidence 1 11 123456788999999999999999999999887 4333222222222111 11 1 22223
Q ss_pred HHHHHHcCCC----------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 380 GRNALDCYPN----------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 380 ~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
++......++ -..++.+.+.+.+..+.-+.+.+...+.-...|..............+...+.++.+++.
T Consensus 286 k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 286 KKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3322222221 123455666666666766666665554444444432222223333333337889999999
Q ss_pred HHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH--------HHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607 450 RLLQMGLYN-AELFNNLALCCFYSQQYDMVVTCFER--------ALSLALNENAADVWYNISHVAILNALSTSVYNDQPE 520 (677)
Q Consensus 450 ~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~ 520 (677)
...+.+|.+ ..+...++.+....|+++.|+..+.. ..+.... +.+...+-..+. ..++.+
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~--------~~~~~~ 434 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---PGTVGAIVALYY--------KIKDND 434 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHH--------hccCCc
Confidence 999999987 67888899999999999999999993 3333222 222222222333 455555
Q ss_pred HHHHHHHHHH-------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 521 VALLFYRRLL-------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 521 ~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
.|...+..++ .-.+.....+...+..-.+.|+-++|...+++.++ .+|++.++...+...|.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYA 503 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHH
Confidence 5555555555 33333344566677777888999999999999999 89999999999888874
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=3e-13 Score=131.89 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH---HH
Q psy16607 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LF 462 (677)
Q Consensus 389 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~ 462 (677)
..+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455556666666666666666666666666655543 35556666666666666666666666666555443 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhhhccc
Q psy16607 463 NNLALCCFYS--------QQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 463 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~ 492 (677)
+.+|.++... |++++|+..|++++...|++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 5555555543 45555555555555555554
No 89
>KOG3785|consensus
Probab=99.58 E-value=2.5e-12 Score=122.09 Aligned_cols=331 Identities=12% Similarity=-0.013 Sum_probs=230.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhCc-----------CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKACE-----------FR--------------DWWWKVQLGKCYFSLGLIREAQQQFNS 349 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~p-----------~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (677)
++-+++-.|.|.+|..+..++.+..- .+ ...-...+|.+++..-.|++|+..|.+
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44556667999999998888643210 00 011113467777788889999999999
Q ss_pred HHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHH------------
Q psy16607 350 ALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKL------------ 416 (677)
Q Consensus 350 al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------------ 416 (677)
++..+| ....-..++.||+++.-++-+.+.+.--+...|+.+.+...++..+++.=+-..|....+.
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 999888 4556678899999999999999999999999999888877777666554222122211111
Q ss_pred ----------------HHHhCcC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q psy16607 417 ----------------ILKRDAT----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 476 (677)
Q Consensus 417 ----------------al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 476 (677)
+++.-|. -+++..+++..|..+++.++|+.+.+ .++|..|.-+...|.++...|+--
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhc
Confidence 1222222 36778888888999999999988776 468888888888999988888765
Q ss_pred HHHHHHHHHHh---hhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607 477 MVVTCFERALS---LALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 549 (677)
Q Consensus 477 ~A~~~~~~al~---~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 549 (677)
...+.++-+-+ +-... ....-...++.++. -..++++.+.++...-....++....++++.++..
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF--------L~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF--------LSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA 405 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 55444443322 11111 00112233333333 45678888888877777777788888999999999
Q ss_pred ccCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-hH
Q psy16607 550 SQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-GL 627 (677)
Q Consensus 550 ~g~~~~A~~~~~~al~~~~~-p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-~~ 627 (677)
.|.|.+|.+.|-+.-. .+ .+.......++.||. ..++.+-|...+-+.- .|.. -.
T Consensus 406 tgny~eaEelf~~is~--~~ikn~~~Y~s~LArCyi-------------------~nkkP~lAW~~~lk~~--t~~e~fs 462 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISG--PEIKNKILYKSMLARCYI-------------------RNKKPQLAWDMMLKTN--TPSERFS 462 (557)
T ss_pred hcChHHHHHHHhhhcC--hhhhhhHHHHHHHHHHHH-------------------hcCCchHHHHHHHhcC--CchhHHH
Confidence 9999999999988755 33 234455667899999 9999999988775531 2222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 628 SQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 628 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
.+..++..+++.+.+--|.+.|...-.++|.-
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 45567888889999999999998888888754
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=3.9e-13 Score=131.04 Aligned_cols=188 Identities=11% Similarity=-0.026 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HH
Q psy16607 322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D---IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IM 394 (677)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 394 (677)
.....++.+|..++..|++++|+..|++++...| + ..+++.+|.++...|++++|+..++++++.+|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455568899999999999999999999999887 3 367899999999999999999999999999987765 68
Q ss_pred HHHHHHHHHc--------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607 395 TEMARIFEGL--------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 466 (677)
Q Consensus 395 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 466 (677)
+.+|.++... |++++|++.|++++..+|++..++..+..+.... .. .......+|
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHHHHH
Confidence 8889988876 7888999999999999998765543332221110 00 012235678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 467 LCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
.++...|++.+|+..|++++...|+. ....+++.+|.++. ..|++++|..+++.+....|
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~--------~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL--------KLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCC
Confidence 88889999999999999999887764 34688889999988 88999999888877766554
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=5.1e-11 Score=125.98 Aligned_cols=132 Identities=9% Similarity=0.075 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 472 (677)
+++.++..|...|++++|+++.++++...|..++.+...|.++...|++.+|.+.++.+..+++.+-.+....+..+.+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhhccc-----chHHHHH--HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607 473 QQYDMVVTCFERALSLALNE-----NAADVWY--NISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532 (677)
Q Consensus 473 g~~~~A~~~~~~al~~~p~~-----~~~~~~~--~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~ 532 (677)
|+.++|...+......+.+. ...-.|+ ..|.++. +.|++..|+..|..+.+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~--------r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL--------RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHH
Confidence 88888888877765544211 1122343 3355555 888999998888877754
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=1.9e-13 Score=120.97 Aligned_cols=122 Identities=14% Similarity=0.030 Sum_probs=60.2
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH
Q psy16607 346 QFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM 425 (677)
Q Consensus 346 ~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 425 (677)
.|+++++.+|+. +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|.++
T Consensus 15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 344444444421 333444445555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
.+++.+|.++...|++++|+..|++++...|+++..+..++.+.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55555555555555555555555555555555555444444443
No 93
>KOG1130|consensus
Probab=99.52 E-value=3.9e-13 Score=129.91 Aligned_cols=306 Identities=14% Similarity=0.118 Sum_probs=187.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCcHHHHHHH
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY------PNEVTIMTEM 397 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 397 (677)
.-|.-+++.|++...+.+|+.+++... -..+|..+|.+|..+++|.+|+++...-+.+. -......-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 445666777777777777777777654 23456667777777777777766543322111 1122334455
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCcC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607 398 ARIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471 (677)
Q Consensus 398 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 471 (677)
|.++.-+|.|++|+.+..+-+.+... ...+++++|.+|...|+.-.-..- -+......++
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev---------- 167 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEV---------- 167 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHH----------
Confidence 66666666666666655554433221 234555555555555432110000 0000000000
Q ss_pred cCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC------cHHHHH
Q psy16607 472 SQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY------NAELFN 541 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~ 541 (677)
...++.|+++|..-+++.... ....++-++|..| +-.|+++.|+..-+.-+.+... .-.++.
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTy--------YlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s 239 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY--------YLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS 239 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCcee--------eeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 011334555555554443221 0122334444444 4899999999988776654332 235788
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607 542 NLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL 617 (677)
Q Consensus 542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~ 617 (677)
++|.++.-.|+++.|+++|++.+.++..- ..+..-+.+|..|. -..++++|+.++.+
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-------------------ll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-------------------LLKEVQKAITYHQR 300 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-------------------HHHHHHHHHHHHHH
Confidence 99999999999999999999988765432 33466788999888 88999999999999
Q ss_pred HHccCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHhcCC
Q psy16607 618 ALSIDS------SHGLSQNNLAVLEAREGHIERASTYLQAAAASS-----PY-LYETHYNQAVISNLVSV 675 (677)
Q Consensus 618 al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~G~ 675 (677)
-+.+.. ....+++.||..+-..|..++|+.+.++.+++. |. ...+..|+......+|.
T Consensus 301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 877643 235688999999999999999999988887753 22 23466777776666653
No 94
>KOG1130|consensus
Probab=99.52 E-value=3.9e-13 Score=129.96 Aligned_cols=313 Identities=15% Similarity=0.131 Sum_probs=200.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFR---DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAF 360 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~ 360 (677)
-..+-|.-+++.|+++..+.+|+.+++..... ...+|..+|.+|+..++|++|+++-..=+.+.. ....-
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 34455666788999999999999999887422 224567899999999999999987655443221 45667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPN------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
-++|.++...|.|++|+.+..+-+.+... ...+++++|.+|...|+.-.-..--+ ......++
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee----~g~f~~ev------- 167 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE----KGAFNAEV------- 167 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh----cccccHHH-------
Confidence 78999999999999999999887765422 35689999999998876211000000 00000000
Q ss_pred HHhCCChHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHH
Q psy16607 435 HFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHV 504 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~ 504 (677)
...++.|.++|..-+++... ...++-++|..|+.+|+|+.|+...+.-+.+.... ....++.++|.+
T Consensus 168 ---~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 168 ---TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 01122333333333332111 12345566666666666666666655554443321 123456667777
Q ss_pred HHHhhhcccccCCCHHHHHHHHHHHHH----cCC--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHH
Q psy16607 505 AILNALSTSVYNDQPEVALLFYRRLLQ----MGL--YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAAD 574 (677)
Q Consensus 505 ~~l~~l~~~~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~ 574 (677)
++ -.|+++.|+++|+..+. +.. ..+...+.||..|.-.+++.+||.++.+-+.++..- ....
T Consensus 245 hi--------flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 245 HI--------FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hh--------hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 76 67777777777776652 222 234567889999999999999999998877654322 3346
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC----CC--ChHHHHHHHHHHHHcCCHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID----SS--HGLSQNNLAVLEAREGHIER 644 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~la~~~~~~g~~~~ 644 (677)
+.+.+|..+. .+|..++|+.+.++.+++. .. ...+..++.......|..+.
T Consensus 317 acwSLgna~~-------------------alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 317 ACWSLGNAFN-------------------ALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHH-------------------hhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 6778888887 8999999998888777642 11 22455666666666665443
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=4.9e-11 Score=126.14 Aligned_cols=297 Identities=12% Similarity=0.062 Sum_probs=214.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN- 405 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 405 (677)
.....++...|++++|+..+++....-. ....+...|.++.++|++++|...|+.+++.+|++...+..+..+.....
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 5667788888999999999888666554 56777888999999999999999999999999999888888887773332
Q ss_pred ----ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607 406 ----NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEV-ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 480 (677)
Q Consensus 406 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 480 (677)
+.+.-...|++.....|..... ..+...+.....+.. +..++...+.. .-|.++.++-.+|....+..-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHH
Confidence 4566678888877777754322 222222222223333 23334444433 355666666666654443333333
Q ss_pred HHHHHHhh---------------hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16607 481 CFERALSL---------------ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545 (677)
Q Consensus 481 ~~~~al~~---------------~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 545 (677)
++...... .|......+++.++..+. ..|++++|+++.++++...|..++.+...|.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd--------~~g~~~~Al~~Id~aI~htPt~~ely~~Kar 236 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD--------YLGDYEKALEYIDKAIEHTPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 33332211 111112345677888887 8999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC--
Q psy16607 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS-- 623 (677)
Q Consensus 546 ~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p-- 623 (677)
++...|++.+|...++.+.. +++.+..+-...+..+. +.|+.++|.+.+..-...+-
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~L-------------------Ra~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLL-------------------RAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHH-------------------HCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999999999 88888888888888777 99999999998887655442
Q ss_pred CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 624 SH-------GLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 624 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
.. .......|.+|.+.|++..|+..|..+.+..
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11 1223456899999999999999998887753
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=5.8e-10 Score=108.72 Aligned_cols=293 Identities=13% Similarity=0.032 Sum_probs=218.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCC
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN-EVTIMTEMARIFEGLNN 406 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 406 (677)
.-|..-+..|+|.+|++...+.-+..+ ..-.+..-+...-+.|+++.|-.++.++-+..++ ...+...++.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 445556677999999999999877766 4456666778888899999999999999888443 45677888999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH---HHHHHH--HHHHcCCHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLAL--CCFYSQQYDMVVTC 481 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~--~~~~~g~~~~A~~~ 481 (677)
+..|.....++++..|.++.++.....+|...|++.....++.+..+..--+.+- +-+.+. ++.+.++-+.+..
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g- 247 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG- 247 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH-
Confidence 9999999999999999999999999999999999999999998887754333221 111111 1112222222222
Q ss_pred HHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy16607 482 FERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 559 (677)
Q Consensus 482 ~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 559 (677)
+....+.-|.. ..+.....++.-+. .+|+.++|.+...++++..-+.. .... .-..+-++...=++.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li--------~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~ 316 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLI--------RLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKA 316 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHH--------HcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHH
Confidence 22222222221 11555556666666 88999999999999997765443 1111 223456788888888
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc
Q psy16607 560 FERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 639 (677)
Q Consensus 560 ~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 639 (677)
.++.+. ..|+++..+..+|..+. +.+.|.+|..+|+.+++..|+ ...+..+|.++.+.
T Consensus 317 ~e~~l~--~h~~~p~L~~tLG~L~~-------------------k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~ 374 (400)
T COG3071 317 AEKWLK--QHPEDPLLLSTLGRLAL-------------------KNKLWGKASEALEAALKLRPS-ASDYAELADALDQL 374 (400)
T ss_pred HHHHHH--hCCCChhHHHHHHHHHH-------------------HhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHc
Confidence 889888 78999999999999998 999999999999999988875 56788899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy16607 640 GHIERASTYLQAAAAS 655 (677)
Q Consensus 640 g~~~~A~~~~~~al~~ 655 (677)
|+..+|.+.+++++.+
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998854
No 97
>KOG1128|consensus
Probab=99.50 E-value=3.2e-12 Score=132.73 Aligned_cols=235 Identities=17% Similarity=0.234 Sum_probs=207.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607 321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI 400 (677)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (677)
+..|.....++..+...|-..+|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 455666678999999999999999999985 6788899999999999999999999998 56688888888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607 401 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 480 (677)
Q Consensus 401 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 480 (677)
.....-|++|.++.+.. +..+...+|......++++++.++++..++++|-....|+.+|.+..+.+++..|.+
T Consensus 467 ~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 87777677777766653 455778888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 481 ~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 560 (677)
+|.+++...|++ ..+|++++..|+ ..++..+|...++++++-+-.+...|-+.-.+..+.|.+++|++.|
T Consensus 541 aF~rcvtL~Pd~--~eaWnNls~ayi--------~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 541 AFHRCVTLEPDN--AEAWNNLSTAYI--------RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHhhcCCCc--hhhhhhhhHHHH--------HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999999 999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHH
Q psy16607 561 ERALSLALNENAADVWYNI 579 (677)
Q Consensus 561 ~~al~~~~~p~~~~~~~~l 579 (677)
.+.+.+..+..+..+...+
T Consensus 611 ~rll~~~~~~~d~~vl~~i 629 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLII 629 (777)
T ss_pred HHHHHhhhhcccchhhHHH
Confidence 9999855444444444333
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=3.9e-12 Score=140.04 Aligned_cols=239 Identities=11% Similarity=0.051 Sum_probs=174.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
+..++..++..+...+++++|+..++..++.+|+...+++.+|.++.+.+++.++.-+ .++...+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------------ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------------ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc------------
Confidence 7889999999999999999999999999999999999999999999999987776665 44444333
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~ 515 (677)
..++ .+++++...+...+++..+++.+|.||-++|++++|...|+++++.+|++ +.++.++|..+. .
T Consensus 96 --~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~a--------e 162 (906)
T PRK14720 96 --NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYE--------E 162 (906)
T ss_pred --ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHH--------H
Confidence 3334 44555555555566677788888888888888888888888888888887 888888888877 5
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595 (677)
Q Consensus 516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~ 595 (677)
. +.++|+.++.+++.. +...++|.++.+++.+.+. .+|++.+.+..+-...............
T Consensus 163 ~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred h-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHH
Confidence 5 788888888877654 5566677777777777777 6676665543332221100000011111
Q ss_pred chhhh-HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607 596 HTSYL-FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638 (677)
Q Consensus 596 ~~~~~-~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 638 (677)
....| -|...++|++++..++.+++.+|.+..+...++.+|..
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 11222 44488899999999999999999999999999998874
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=1.5e-12 Score=121.53 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=112.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH-HHhhcCCCCc
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA-IITECSPFSF 593 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~-~~~~~~p~~~ 593 (677)
..++.++++..++++++.+|++...|..+|.++...|++++|+..|++++. .+|++..++..+|.++ .
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~--------- 119 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYY--------- 119 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH---------
Confidence 356778889999999999999999999999999999999999999999999 8899999999999864 5
Q ss_pred ccchhhhHHhcCCC--HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 594 STHTSYLFIQGISD--TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 594 ~~~~~~~~l~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
..|+ +++|...++++++.+|+++.+++.+|.++.+.|++++|+.+|++++++.|.+.+
T Consensus 120 ----------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 120 ----------QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred ----------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 6677 599999999999999999999999999999999999999999999999887653
No 100
>KOG3060|consensus
Probab=99.49 E-value=1.3e-11 Score=112.57 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
+..+-....+....|+.+.|..++++.....|....+....|..+...|++++|+++|+..++-+|.+...+-....+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 34445555666667777778888877777778777777777777788888888888888888888877777777777777
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~ 516 (677)
.+|+.-+|++.+...++.++.+.++|..++.+|...|+|++|.-|+++++-+.|.+ +-.+..++.++.... ..
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~g-----g~ 204 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQG-----GA 204 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHh-----hH
Confidence 77777788888888888888888888888888888888888888888888777776 666666666654100 23
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 549 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 549 (677)
.+++-|.++|.++++++|.+...++.+-.+...
T Consensus 205 eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 205 ENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 456777788888888888777777666555443
No 101
>KOG4340|consensus
Probab=99.49 E-value=7.1e-12 Score=116.46 Aligned_cols=363 Identities=12% Similarity=0.044 Sum_probs=253.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR 369 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 369 (677)
+..++|+||+...+|..|..+|++.-...|. .....+..+..+++.+.+.+|+.....+..... ..+.+...+.+.+.
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999998888853 334446778888999999999988887765533 55566666777777
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
.+++..+....++.-. .++.+...+.|.+.++.|++++|++-|+.+++...-++-.-++++.++++.+++..|+++..
T Consensus 125 e~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888877766555321 25678889999999999999999999999999999899999999999999999999999887
Q ss_pred HHHHc----CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607 450 RLLQM----GLY----------------N---------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500 (677)
Q Consensus 450 ~al~~----~~~----------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 500 (677)
+.++. .|. + .++++..+.++++.|+++.|.+.+..+--....+..+..+.+
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 77653 332 1 145677788999999999998877655333222233566777
Q ss_pred HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607 501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 580 (677)
Q Consensus 501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~ 580 (677)
++..- ..+++.+..+-++-.+.++|--.+.+-++-.+|++..-|+-|...+-+--.+... --....+.+-
T Consensus 283 ~Al~n---------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk-~L~~Yly~LL 352 (459)
T KOG4340|consen 283 QALMN---------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYK-FLTPYLYDLL 352 (459)
T ss_pred HHHhc---------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHH-HhhHHHHHHH
Confidence 77665 4678888888889999999988899999999999998888887665321110000 0001122222
Q ss_pred HHHHHhhcCCCC--------cccchh--------hhHHhcCC---CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607 581 HVAIITECSPFS--------FSTHTS--------YLFIQGIS---DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 641 (677)
Q Consensus 581 ~~~~~~~~~p~~--------~~~~~~--------~~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 641 (677)
..+......|.. ...... ...-...+ ....|++.|++++++ ...+....+++++...+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLED 429 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccc
Confidence 221111001100 000000 00000111 134456666666664 34577888999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 642 IERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 642 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
|..+.+.|+...+...++.....|.|.+
T Consensus 430 y~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 430 YPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred cHHHHHHHHHHHhhhcccceeeeccccc
Confidence 9999999999999888876655555543
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=3.4e-12 Score=119.26 Aligned_cols=123 Identities=12% Similarity=0.155 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH-HhCCC--hHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH-FYNDQ--PEVALL 446 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 446 (677)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566677888888888888888888888888888888888888888888888888888888888764 56666 488888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
.++++++.+|+++.++..+|..+...|++++|+.+++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8888888888888888888888888888888888888888887765
No 103
>KOG3060|consensus
Probab=99.47 E-value=2.4e-11 Score=110.87 Aligned_cols=202 Identities=16% Similarity=0.113 Sum_probs=177.7
Q ss_pred ccCHHHHHHHHHHHHhhCc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHH
Q psy16607 302 ENDVASAMDLAVESTKACE-----FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIR 375 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 375 (677)
..+.++-++++...+...+ ++.|..+-.+..+.+..|+.+-|..++++.....| +..+....|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4677778888777765432 34455556677888889999999999999888888 78888889999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
|+++|+..++.+|.+...+...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q psy16607 456 LYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVA 505 (677)
Q Consensus 456 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 505 (677)
|.++..+..+|.+++-.| ++.-|.++|.++++++|.+ ..+++.+..+.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~--~ral~GI~lc~ 235 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN--LRALFGIYLCG 235 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh--HHHHHHHHHHH
Confidence 999999999999998876 4667899999999999976 77777665554
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=1.5e-10 Score=136.21 Aligned_cols=334 Identities=11% Similarity=-0.002 Sum_probs=241.4
Q ss_pred HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----------CHHHHHHHHHHH
Q psy16607 298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----------DIEAFIRMIRVY 367 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~la~~~ 367 (677)
.....|++..+..++..+-..............+.++...|++++|...+.++....+ .......++.++
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666665542111122233335678888899999999999998865321 234455678888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNEV-----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHF 436 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 436 (677)
...|++++|...+++++...+... .+...+|.++...|++++|...+++++...... ..++..++.++.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 999999999999999988654322 345778889999999999999999998764321 345677899999
Q ss_pred hCCChHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc---chHHHHHHHHHHH
Q psy16607 437 YNDQPEVALLFYRRLLQMGLY--------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVA 505 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~l~~~~ 505 (677)
..|++++|...+++++..... ....+..+|.++...|++++|...+.+++...... .....+..++.++
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999999998875221 22345678899999999999999999998764321 1244556677777
Q ss_pred HHhhhcccccCCCHHHHHHHHHHHHHcCCCc---HHHHH----HHHHHHHhccCHHHHHHHHHHHHHHhhccchH----H
Q psy16607 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYN---AELFN----NLALCCFYSQQYDMVVTCFERALSLALNENAA----D 574 (677)
Q Consensus 506 ~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~----~ 574 (677)
. ..|++++|...+.++....... ..... .....+...|+.+.|..++..... ..+... .
T Consensus 623 ~--------~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~~ 692 (903)
T PRK04841 623 L--------ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK--PEFANNHFLQG 692 (903)
T ss_pred H--------HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC--CCCccchhHHH
Confidence 7 8999999999999987653221 11111 122445567899999998877654 221111 2
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC------CChHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIERASTY 648 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~ 648 (677)
.+..++.++. ..|++++|...+++++.... ....++..+|.++...|+.++|...
T Consensus 693 ~~~~~a~~~~-------------------~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 693 QWRNIARAQI-------------------LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2456777777 99999999999999987532 2245788899999999999999999
Q ss_pred HHHHHHhCCCCh
Q psy16607 649 LQAAAASSPYLY 660 (677)
Q Consensus 649 ~~~al~~~p~~~ 660 (677)
+.+++++.....
T Consensus 754 L~~Al~la~~~g 765 (903)
T PRK04841 754 LLEALKLANRTG 765 (903)
T ss_pred HHHHHHHhCccc
Confidence 999999875543
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.46 E-value=1e-11 Score=136.74 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=119.3
Q ss_pred hhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHH
Q psy16607 282 AKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFI 361 (677)
Q Consensus 282 ~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 361 (677)
.++.....-+..-+...+...+++++|+++++..+...|.... +++.+|..++..+++.++... .++...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-~yy~~G~l~~q~~~~~~~~lv--~~l~~~------- 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-ALYISGILSLSRRPLNDSNLL--NLIDSF------- 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-hHHHHHHHHHhhcchhhhhhh--hhhhhc-------
Confidence 3333333333333344455567777777777766666643333 335666666666665555444 333222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh
Q psy16607 362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP 441 (677)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 441 (677)
....++ .+++++...+...+.+..+++.+|.+|.++|+.++|...|+++++.+|+++.++.++|..|... +.
T Consensus 94 ------~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 94 ------SQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ------ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 222233 3444444444445666678888888888888888888888888888888888888888888888 88
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++|++++.+++.. +...++|.++..++.+.+..+|++
T Consensus 166 ~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 166 EKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 8888888888776 566678888888888888888776
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=1.3e-11 Score=114.10 Aligned_cols=168 Identities=17% Similarity=0.116 Sum_probs=80.7
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607 382 NALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 461 (677)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 461 (677)
+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..++++....|++.++
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 333444444444 4444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN 541 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 541 (677)
|..+|.+|.+.|+++.|...|.+++++.|.+ +.+..++|..+. -.|+++.|..++..+....+.+..+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~--------L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLL--------LRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHH--------HcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 4444444444444444444444444444444 444444444444 444444444444444444444445555
Q ss_pred HHHHHHHhccCHHHHHHHH
Q psy16607 542 NLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 542 ~la~~~~~~g~~~~A~~~~ 560 (677)
+++.+....|++++|....
T Consensus 207 NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 207 NLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHhhcCChHHHHhhc
Confidence 5555555555555554443
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=8.3e-12 Score=115.25 Aligned_cols=182 Identities=15% Similarity=0.103 Sum_probs=160.3
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607 440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQP 519 (677)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~ 519 (677)
+...+...+-+....+|.+..+ .+++..+...|+-+.+..+..++....|.+ ......+|.... ..|++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--~~ll~~~gk~~~--------~~g~~ 116 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--RELLAAQGKNQI--------RNGNF 116 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--HHHHHHHHHHHH--------Hhcch
Confidence 3444666666777788999888 899999999999999999999988888887 777777888777 88999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhh
Q psy16607 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSY 599 (677)
Q Consensus 520 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 599 (677)
.+|+..++++....|++.+.|+.+|.+|.+.|++++|...|.++++ +.|+.+.+..|+|..+.
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~--------------- 179 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLL--------------- 179 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHH---------------
Confidence 9999999999999999999999999999999999999999999999 88999999999999998
Q ss_pred hHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 600 LFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653 (677)
Q Consensus 600 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 653 (677)
-.|+++.|..++..+....+.+..+..+++.+....|++++|...-.+-+
T Consensus 180 ----L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 180 ----LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred ----HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999998888889999999999999999999988776543
No 108
>KOG1128|consensus
Probab=99.44 E-value=7.6e-12 Score=129.98 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 472 (677)
.-..++.++...|-...|+..|++. ..|.....+|...|+..+|..+..+-++ .|.++..|..+|.+....
T Consensus 400 ~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence 3344555555555555555555442 2333344455555555555555544444 334444444444444333
Q ss_pred CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q psy16607 473 QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552 (677)
Q Consensus 473 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 552 (677)
.-|++|.++.+..- ..+...+|.... ..++++++.+.++..++++|-....|+.+|.+..+.++
T Consensus 471 s~yEkawElsn~~s--------arA~r~~~~~~~--------~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 471 SLYEKAWELSNYIS--------ARAQRSLALLIL--------SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HHHHHHHHHhhhhh--------HHHHHhhccccc--------cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 33333333222110 222223333222 34555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHH
Q psy16607 553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL 632 (677)
Q Consensus 553 ~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 632 (677)
+..|.++|.+++. .+|++..+|++++..|. +.|+..+|...++++++.+-.+..+|-|.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi-------------------~~~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYI-------------------RLKKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHH-------------------HHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 5555555555555 45555555555555555 55555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 633 AVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 633 a~~~~~~g~~~~A~~~~~~al~~ 655 (677)
-.+....|.+++|+..|.+.+.+
T Consensus 594 mlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHh
Confidence 55555555555555555555443
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=3.4e-11 Score=132.07 Aligned_cols=161 Identities=9% Similarity=0.008 Sum_probs=114.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH---ccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607 332 KCYFSLGLIREAQQQFNSAL---NQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407 (677)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~al---~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (677)
.+....+....+...+-+++ ...| +.+++..+|.+..+.|.+++|..+++.+++..|++..++..++.++.+.+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH
Confidence 34444444433333333333 2344 5777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
++|+..+++++..+|++..+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhccc
Q psy16607 488 LALNE 492 (677)
Q Consensus 488 ~~p~~ 492 (677)
...+-
T Consensus 217 ~~~~~ 221 (694)
T PRK15179 217 AIGDG 221 (694)
T ss_pred hhCcc
Confidence 65543
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=1.9e-11 Score=134.00 Aligned_cols=136 Identities=15% Similarity=-0.025 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
.+++..++.+.. ..|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++. .+|++..
T Consensus 86 ~~~~~~La~i~~--------~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~ 155 (694)
T PRK15179 86 ELFQVLVARALE--------AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAR 155 (694)
T ss_pred HHHHHHHHHHHH--------HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHH
Confidence 555555555555 555555555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
.++.+|.++. +.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++
T Consensus 156 ~~~~~a~~l~-------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 156 EILLEAKSWD-------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHH-------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555 555555555555555555555555555555555555555555555555555
Q ss_pred hCCCC
Q psy16607 655 SSPYL 659 (677)
Q Consensus 655 ~~p~~ 659 (677)
....-
T Consensus 217 ~~~~~ 221 (694)
T PRK15179 217 AIGDG 221 (694)
T ss_pred hhCcc
Confidence 54433
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=1.2e-11 Score=109.01 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=113.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
+.+++++..+|++....+.+|.++...|++++|+..+++++. .+|.+..+|..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~------------------- 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQ------------------- 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------
Confidence 467889999999999999999999999999999999999999 88999999999999999
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 663 (677)
..|++++|+..+++++..+|.++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999999999999999999999999998744
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=1.4e-09 Score=127.94 Aligned_cols=348 Identities=13% Similarity=-0.006 Sum_probs=246.9
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHcCChHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ--FTDIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A 376 (677)
+...|++.+|+..+..+-... .........+..+...|++..+...+..+-.. ..++......+.++...|++++|
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 556789998887666553221 11122344667777889988877776654111 11444556778888899999999
Q ss_pred HHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChH
Q psy16607 377 IDIGRNALDCYPN---------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPE 442 (677)
Q Consensus 377 ~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 442 (677)
...+..+....+. .......++.++...|++++|...+++++...+.. ..+...+|.++...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999988764321 12345567888899999999999999999864432 235567888999999999
Q ss_pred HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc------hHHHHHHHHHHHHHhhh
Q psy16607 443 VALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN------AADVWYNISHVAILNAL 510 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~l~~~~~l~~l 510 (677)
+|...+++++...... ...+..+|.++...|++++|...+++++....... ....+..++.++.
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---- 584 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW---- 584 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH----
Confidence 9999999998753321 24567789999999999999999999988643210 1223445666666
Q ss_pred cccccCCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHH----HH
Q psy16607 511 STSVYNDQPEVALLFYRRLLQMGL-----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYN----IS 580 (677)
Q Consensus 511 ~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~----l~ 580 (677)
..|++++|...+.+++.... .....+..++.++...|++++|...+.++..+...... ...... ..
T Consensus 585 ----~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 585 ----EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred ----HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 78999999999999886432 23456677899999999999999999999874322211 111111 11
Q ss_pred HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL----SQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
..+. ..|+.+.|...+.......+.... .+..++.++...|++++|...+++++...
T Consensus 661 ~~~~-------------------~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 661 IYWQ-------------------MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HHHH-------------------HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2223 689999999998776653322221 25678999999999999999999999863
Q ss_pred C------CChHHHHHHHHHHHhcCC
Q psy16607 657 P------YLYETHYNQAVISNLVSV 675 (677)
Q Consensus 657 p------~~~~~~~~la~~~~~~G~ 675 (677)
. ....++..+|.++...|+
T Consensus 722 ~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 722 RSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHhCchHHHHHHHHHHHHHHHHcCC
Confidence 2 223567788999988886
No 113
>KOG4340|consensus
Probab=99.38 E-value=8e-11 Score=109.58 Aligned_cols=313 Identities=15% Similarity=0.098 Sum_probs=222.4
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI 377 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 377 (677)
+.+..+|..|++++..-.+..|.+.... ..+|.||+...+|..|..+|++.-...| .....+..+..+++.+.+.+|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgL-SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGL-SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 3778899999999999998886555544 7899999999999999999999999988 5566677888999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
.....+.....-....+...+.+.+..+++..+....++.- ..+......+.|.+.++.|+++.|++-|+.+++....
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 98877654422233455566777778888888877665532 1246778889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
.+.+-++++.++++.|++..|+++....++..-.+ .++ .++|..-. .......|+. +..-.. .-.
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieRG~r~-HPE--lgIGm~te---giDvrsvgNt---~~lh~S------al~ 241 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQ-HPE--LGIGMTTE---GIDVRSVGNT---LVLHQS------ALV 241 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc-CCc--cCccceec---cCchhcccch---HHHHHH------HHH
Confidence 99999999999999999999999888877665332 111 12222211 0000001111 001111 113
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL 617 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~ 617 (677)
++++..+.++++.++++.|.+.+..+--.....-++..+.+++..- ..+++.+..+-+.-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n--------------------~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN--------------------MDARPTEGFEKLQF 301 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc--------------------ccCCccccHHHHHH
Confidence 4566778888999999988877755433212223455666666553 45667777777777
Q ss_pred HHccCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607 618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYL 649 (677)
Q Consensus 618 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 649 (677)
.+.++|--.+.+-++-.+|++..-++-|...+
T Consensus 302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 78888866677888888888877777665544
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=1.3e-11 Score=121.95 Aligned_cols=260 Identities=15% Similarity=0.122 Sum_probs=173.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607 331 GKCYFSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (677)
.+.++..|+|..++..++ .....+ .......+.+++..+|+++..+.-... ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 345666777777776665 222333 455667777777778877765544432 12223444555555554444555
Q ss_pred HHHHHHHHHHHhCc--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 409 MSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 409 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
.++..++..+.... .+.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56655554433221 23344555667777888888888877653 567777788888889999999999998888
Q ss_pred hhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607 487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566 (677)
Q Consensus 487 ~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 566 (677)
+.+.+. . ..+++..+.-... -.+++.+|...|++..+..+.++..++.++.++..+|+|++|...+++++.
T Consensus 159 ~~~eD~--~--l~qLa~awv~l~~----g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~- 229 (290)
T PF04733_consen 159 QIDEDS--I--LTQLAEAWVNLAT----GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE- 229 (290)
T ss_dssp CCSCCH--H--HHHHHHHHHHHHH----TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC-
T ss_pred hcCCcH--H--HHHHHHHHHHHHh----CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 776654 2 3333333320000 124689999999998888888899999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH-HHHHHHHHHHHccCCCChHH
Q psy16607 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT-RLAIQCLHLALSIDSSHGLS 628 (677)
Q Consensus 567 ~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~-~~A~~~~~~al~~~p~~~~~ 628 (677)
.+|++++++.++..+.. ..|+. +.+.+++.+....+|+++.+
T Consensus 230 -~~~~~~d~LaNliv~~~-------------------~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 230 -KDPNDPDTLANLIVCSL-------------------HLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp -C-CCHHHHHHHHHHHHH-------------------HTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred -hccCCHHHHHHHHHHHH-------------------HhCCChhHHHHHHHHHHHhCCCChHH
Confidence 88999999999999888 88888 66777888888888887643
No 115
>KOG2047|consensus
Probab=99.37 E-value=7.2e-09 Score=106.39 Aligned_cols=296 Identities=14% Similarity=0.079 Sum_probs=201.8
Q ss_pred HHcCCHHHHHHHHHHHHc-cCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHH
Q psy16607 335 FSLGLIREAQQQFNSALN-QFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP----NEVTIMTEMARIFEG 403 (677)
Q Consensus 335 ~~~g~~~~A~~~~~~al~-~~p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~ 403 (677)
+..|+..+-+..|.++++ .+| -...|..+|..|...|+.+.|...|+++.+..= +-..+|...|..-.+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 334666777777777776 344 246778888888888888888888888877642 225678888888888
Q ss_pred cCChhHHHHHHHHHHHhCc------------------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607 404 LNNMPMSVKYYKLILKRDA------------------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465 (677)
Q Consensus 404 ~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 465 (677)
..+++.|+.+.+++...-. .+...|..++......|-++.....|++++.+.--.|....+.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888888888765421 1245677778888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH--HHHHHH
Q psy16607 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA--ELFNNL 543 (677)
Q Consensus 466 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l 543 (677)
|..+....-++++.+.|++.+.+.+-+...+.|...-.... . .+.....+.|...|+++++..|... ..+...
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi-~----rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI-K----RYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH-H----HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 98888888899999999998888766545666655443332 0 1134568889999999998877432 245556
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhhccchH-HHHHHH-HHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 544 ALCCFYSQQYDMVVTCFERALSLALNENAA-DVWYNI-SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 544 a~~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~l-~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
+..-..-|--..|+..|+++... ..+... +.|... ..+.. .. -...-...|++|++.
T Consensus 593 A~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae-------------------~y-Gv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 593 AKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE-------------------IY-GVPRTREIYEKAIES 651 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH-------------------Hh-CCcccHHHHHHHHHh
Confidence 67777778888899999887652 222222 222111 11100 01 112334566777766
Q ss_pred CCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 622 DSSHG--LSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 622 ~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
-|+.. +.....+.+-.+.|..+.|..+|.-+-++.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 66542 344556777777888888888887777754
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.36 E-value=1.4e-11 Score=121.70 Aligned_cols=256 Identities=11% Similarity=0.027 Sum_probs=188.8
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID 378 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 378 (677)
++-.|+|..++..++ .....+.........+.+++..+|+++..+...... ..|...+...++..+...++-+.++.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHH
Confidence 345699999997777 334444444455578899999999988776555432 24566666777776665556667776
Q ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607 379 IGRNALDCY--PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 379 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (677)
.++..+... +.+..+....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 666554332 234556677778888899999999888764 5678888888999999999999999999988887
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 457 YNAELFNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 457 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
+..-....-+++....| ++.+|..+|+...+..+.. +..+..++.+.+ .+|++++|.+.+.+++..+|
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l--------~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHL--------QLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHH--------HCT-HHHHHHHHHHHCCC-C
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHhcc
Confidence 76666666666666666 5899999999988877666 888888999988 99999999999999999999
Q ss_pred CcHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhhccchHH
Q psy16607 535 YNAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~p~~~~ 574 (677)
++++++.+++.+....|+. +.+.+++.+... .+|+++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~~ 271 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHPL 271 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCChH
Confidence 9999999999999999988 556677777666 6777663
No 117
>KOG0553|consensus
Probab=99.36 E-value=1e-11 Score=116.80 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
.-|.-+.+.++|.+|+..|.+||. ++|.++..|.+.+.+|. ++|.++.|++.++.++.+
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~-------------------~Lg~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYS-------------------KLGEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHH-------------------HhcchHHHHHHHHHHHhc
Confidence 334444555555555555555555 45555555555555555 555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 622 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 622 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
+|.+..+|..||.+|..+|++++|++.|+++++++|++...+-+|..+...
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555444433
No 118
>KOG2047|consensus
Probab=99.34 E-value=8.8e-08 Score=98.64 Aligned_cols=327 Identities=13% Similarity=0.074 Sum_probs=233.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhh-Cc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C----CHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKA-CE----FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF-T----DIEAF 360 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~-~p----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~~~ 360 (677)
...+...+-+..|+..+-+..|.++++. +| .+....+...|..|...|+.+.|...|+++.+.+ + -..+|
T Consensus 349 V~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 349 VEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred HHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 3334445555679999999999999864 33 2222333789999999999999999999999865 3 35788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC------------------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPN------------------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA 422 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 422 (677)
..-|..-.+..+++.|+.+.+++...-.. ...+|...+......|-++.....|++++.+.-
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 89999999999999999999988754211 134677888888899999999999999999988
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607 423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCF---YSQQYDMVVTCFERALSLALNENAADV 497 (677)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~ 497 (677)
-.+....+.|..+....-++++.+.|++.+.+. |.-.++|+..-..+. ..-+.+.|..+|++|++..|....-..
T Consensus 509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 889999999999999999999999999999986 445566665444333 345789999999999998885421223
Q ss_pred HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHhhccch-
Q psy16607 498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENA- 572 (677)
Q Consensus 498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~p~~- 572 (677)
+...+..-. +-|-...|+..|+++-..-+... .+.+=.+|.+. =-...-...|++|++ .-|+.
T Consensus 589 yLlYA~lEE--------e~GLar~amsiyerat~~v~~a~--~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~ 656 (835)
T KOG2047|consen 589 YLLYAKLEE--------EHGLARHAMSIYERATSAVKEAQ--RLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSK 656 (835)
T ss_pred HHHHHHHHH--------HhhHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHH
Confidence 333333333 55888899999999775443221 11111222211 112344567888888 34433
Q ss_pred -HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC-CC-ChHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 573 -ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID-SS-HGLSQNNLAVLEAREGHIERASTY 648 (677)
Q Consensus 573 -~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~ 648 (677)
...-...+..-. +.|..+.|...|.-+-++. |. +.+.|..--..-.+.|+-+.-.+.
T Consensus 657 ~r~mclrFAdlEt-------------------klGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 657 AREMCLRFADLET-------------------KLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHHHhh-------------------hhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 344555566666 8999999999998887764 43 456777777777788884433333
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=3.7e-11 Score=105.89 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
..+++++..+|++......+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777788777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++..++.+|.++...|++++|+..|+++++.+|++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 88888888888888888888888888888887776
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=5.8e-11 Score=102.64 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=101.4
Q ss_pred HHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 530 LQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 530 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
..+. ++.-+..+.+|..+...|++++|...|+.... .+|.+...|++||.++. .+|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q-------------------~~g~~ 85 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQ-------------------AQKHW 85 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH-------------------HHhhH
Confidence 3556 67778899999999999999999999999999 89999999999999999 99999
Q ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
++|+..|.+++.++|+++..++++|.++...|+.+.|++.|+.++...-
T Consensus 86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999873
No 121
>KOG0553|consensus
Probab=99.30 E-value=4.3e-11 Score=112.63 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
++-+-.-|.-++ +.++|.+|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++. ++|.+..
T Consensus 81 AE~LK~eGN~~m--------~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~ysk 150 (304)
T KOG0553|consen 81 AESLKNEGNKLM--------KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSK 150 (304)
T ss_pred HHHHHHHHHHHH--------HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHH
Confidence 344455566666 899999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHH---HHHHHHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE---RASTYLQA 651 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~ 651 (677)
+|..||.+|. .+|++++|++.|+++++++|++...+.+|..+-.+.+... .+...++.
T Consensus 151 ay~RLG~A~~-------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~ 211 (304)
T KOG0553|consen 151 AYGRLGLAYL-------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDM 211 (304)
T ss_pred HHHHHHHHHH-------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhh
Confidence 9999999999 9999999999999999999999999999988888777655 44444444
Q ss_pred HHH
Q psy16607 652 AAA 654 (677)
Q Consensus 652 al~ 654 (677)
+..
T Consensus 212 ~~~ 214 (304)
T KOG0553|consen 212 AGL 214 (304)
T ss_pred hhh
Confidence 433
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=2e-10 Score=99.28 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=88.1
Q ss_pred HHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607 383 ALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 461 (677)
Q Consensus 383 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 461 (677)
+..+. ++..+..+.+|..+...|++++|...|+-+...+|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34455 66777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 489 (677)
+.+.|.+++..|+.+.|.+.|+.++...
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888776
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=2.3e-09 Score=107.49 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607 422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501 (677)
Q Consensus 422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 501 (677)
|....+++..+..++..|++++|+..++..++..|+++..+...+.++...++.++|.+.+++++...|.. ...+.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999997 8888999
Q ss_pred HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581 (677)
Q Consensus 502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~ 581 (677)
|..+. +.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+...
T Consensus 381 a~all--------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~---------------- 436 (484)
T COG4783 381 AQALL--------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA---------------- 436 (484)
T ss_pred HHHHH--------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH----------------
Confidence 99998 899999999999999999999999999999999999988888877766665
Q ss_pred HHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 582 ~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
..|++++|+..+..+.+...
T Consensus 437 ----------------------~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 437 ----------------------LAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred ----------------------hCCCHHHHHHHHHHHHHhcc
Confidence 88999999999988887653
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=6.1e-09 Score=104.51 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
...+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++.++|.....+.++|..|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 44555555555555666666666666655556666655556666666666666666666666666665555555666666
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 479 (677)
.+.|++.+|+..++..+..+|+++..|..++..|..+|+..++.
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 66666666666666666666666666666666665555554443
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.16 E-value=6.6e-10 Score=114.12 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
+...|..++..|+|++|+.+|++++. .+|++..+++++|.++. .+|++++|+..+++++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~-------------------~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANI-------------------KLGNFTEAVADANKAI 63 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHH
Confidence 34456666777777777777777777 67777777777777777 7777777777777777
Q ss_pred ccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 620 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 620 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.|...
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777766444
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.09 E-value=2.1e-09 Score=110.38 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 439 (677)
+...|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34456666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607 440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 472 (677)
++++|+..|++++.++|+++.+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777666666664444
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=2e-08 Score=94.74 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHH
Q psy16607 323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV---TIMT 395 (677)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 395 (677)
+...++..|..++..|+|.+|+..|++++...| ...+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 444557888888888888888888888888776 457788888888888888888888888888887653 4677
Q ss_pred HHHHHHHHcC-----------ChhHHHHHHHHHHHhCcCCH-----------------HHHHHHHHHHHhCCChHHHHHH
Q psy16607 396 EMARIFEGLN-----------NMPMSVKYYKLILKRDATCM-----------------EAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 396 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~ 447 (677)
.+|.++.... ...+|+..|+..+...|++. .--+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 7777765442 34578888888888888752 1224568889999999999999
Q ss_pred HHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHH
Q psy16607 448 YRRLLQMGLYNA---ELFNNLALCCFYSQQYDMVV 479 (677)
Q Consensus 448 ~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~ 479 (677)
++.+++..|+.. +++..++..|..+|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999988875 56788888888888887543
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=6e-08 Score=93.63 Aligned_cols=181 Identities=11% Similarity=-0.042 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHH
Q psy16607 323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D---IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMT 395 (677)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 395 (677)
+....+..|..++..|++++|+..|++++...| . ..+.+.+|.++++.+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444446788888888888888888888888877 2 3455788888888888888888888888888765 34677
Q ss_pred HHHHHHHHcCC------------------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 396 EMARIFEGLNN------------------MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 396 ~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
.+|.++...+. ..+|+..|++.++..|++.-+ .+|...+..+-. .
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---R 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---H
Confidence 77777654431 245667777777777765211 111111100000 0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR 528 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~ 528 (677)
-..--..+|..|.+.|.|..|+.-++.+++..|+. ...++++.++..+. ..|..++|......
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~--------~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR--------QLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH--------HcCChHHHHHHHHH
Confidence 01122356777778888888888888888777766 44567777777776 77777777665544
No 129
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=1.2e-07 Score=84.70 Aligned_cols=194 Identities=15% Similarity=0.045 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
....++..|..|-..|-+.-|.--|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34566777888888898999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF-ERALSLALNENAADVWYNISHVAILNALSTSV 514 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~ 514 (677)
+..|+++-|.+-+.+..+.+|++|.--..+-..- ..-++.+|...+ +++-..+.+ .--|+..+..
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e---~WG~~iV~~y---------- 209 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE---QWGWNIVEFY---------- 209 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh---hhhHHHHHHH----------
Confidence 9999999999999999998988875322222222 223455555444 445444333 2222222211
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYN-------AELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.|+..+ ...++++.....++ .+.++.+|..+...|+.++|...|+-++.
T Consensus 210 -LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 210 -LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 122211 11222332222222 46789999999999999999999999987
No 130
>KOG1941|consensus
Probab=98.98 E-value=1.4e-07 Score=90.70 Aligned_cols=241 Identities=15% Similarity=0.058 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AE 460 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~ 460 (677)
+++.+++..+.+..++.+++.+-+..+.+.... ......++.++..++.++++++.|+.+++....+ -.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 345555666666666666665555554442222 2344556666666677777777777776653322 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--------chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNE--------NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~ 532 (677)
++..+|.+|....++++|.-+..++.++.... ...-+++.++..+. ..|..-.|.++.+++.++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR--------~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR--------LLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH--------HhcccccHHHHHHHHHHH
Confidence 56677777777788888877777776654332 11334566666666 789999999999888754
Q ss_pred C------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHH
Q psy16607 533 G------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFI 602 (677)
Q Consensus 533 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l 602 (677)
. +-.......+|.+|...|+.+.|..-|+.+......-+ ...+....+.++. ..-+
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~--------------~~r~ 301 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE--------------TLRL 301 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--------------HHHH
Confidence 3 23456777899999999999999999999987432222 2234444454443 0001
Q ss_pred hcCCCHHHHHHHHHHHHccCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 603 QGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 603 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
...+.-=.|++.-++++++...- ...+..++.+|..+|.-++=...+.++-+
T Consensus 302 ~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 302 QNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 11222245777777777764322 24677899999999888877777766544
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.98 E-value=1.9e-07 Score=90.13 Aligned_cols=191 Identities=8% Similarity=-0.056 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHH
Q psy16607 424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWY 499 (677)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 499 (677)
.+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++..|++ ....+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44555566666666666666666666666666655433 3566666666666666666666666666665 4455666
Q ss_pred HHHHHHHHhh---hccc-------ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q psy16607 500 NISHVAILNA---LSTS-------VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569 (677)
Q Consensus 500 ~l~~~~~l~~---l~~~-------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 569 (677)
.+|.++.... +..+ .......+|+..|++.++..|++.-+ .+|...+..+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~----- 171 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK----- 171 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH-----
Confidence 6666542000 0000 01122357888999999999986432 22222111111
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHH
Q psy16607 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERAS 646 (677)
Q Consensus 570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 646 (677)
..-..--..+|..|. +.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.
T Consensus 172 ~~la~~e~~ia~~Y~-------------------~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 172 DRLAKYELSVAEYYT-------------------KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHHHHHHHHHHHHH-------------------HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 111222335677777 9999999999999999988875 578899999999999999998
Q ss_pred HHHHHH
Q psy16607 647 TYLQAA 652 (677)
Q Consensus 647 ~~~~~a 652 (677)
......
T Consensus 233 ~~~~~l 238 (243)
T PRK10866 233 KVAKII 238 (243)
T ss_pred HHHHHH
Confidence 876543
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.4e-08 Score=87.10 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA---ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
+..++.+|..+...|++++|+..|++++. ..|++ ..+++.+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYY-------------------AQGKYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHH-------------------hhccHHHHHH
Confidence 45788999999999999999999999998 66655 578999999999 9999999999
Q ss_pred HHHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 614 CLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 614 ~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
.|++++...|++ +.++..+|.++...|++++|...++++++..|++..+..
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999998875 678999999999999999999999999999999876544
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.97 E-value=4.7e-08 Score=92.17 Aligned_cols=159 Identities=13% Similarity=0.105 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIA 429 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 429 (677)
....++..|..++..|++.+|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.++..|++ ..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999998864 6789999999999999999999999999999986 56788
Q ss_pred HHHHHHHhCC-----------ChHHHHHHHHHHHHcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy16607 430 CIGVNHFYND-----------QPEVALLFYRRLLQMGLYNAEL-----------------FNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 430 ~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~-----------------~~~la~~~~~~g~~~~A~~~ 481 (677)
.+|.+++... ...+|+..|+..+...|++..+ -+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888765542 3458999999999999987522 24578899999999999999
Q ss_pred HHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHH
Q psy16607 482 FERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVA 522 (677)
Q Consensus 482 ~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A 522 (677)
++.+++..|+. ....++..++..+. +.|..+.|
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~--------~l~~~~~a 197 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYY--------KLGLKQAA 197 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHH--------HTT-HHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHH--------HhCChHHH
Confidence 99999999987 34567788888887 77877644
No 134
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=2.7e-06 Score=82.28 Aligned_cols=225 Identities=21% Similarity=0.218 Sum_probs=112.2
Q ss_pred CChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHH--hCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYPN--EVTIMTEMARIFEGLNNMPMSVKYYKLILK--RDATCMEAIACIGVNHFYNDQPEVALL 446 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 446 (677)
+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555555443 244455555555555555555555555554 344445555555555555555555555
Q ss_pred HHHHHHHcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607 447 FYRRLLQMGLYNAELFNNLAL-CCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAILNALSTSVYNDQPEVALL 524 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~ 524 (677)
.+..++...+.........+. ++...|+++.|...+.+++...|. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------- 164 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN-------------------------------- 164 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc--------------------------------
Confidence 555555544444333333333 455555555555555555443331 1
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 525 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 525 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
.....+...+..+...+++++|+..+.+++. ..+. ....+..++..+.
T Consensus 165 ----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------- 213 (291)
T COG0457 165 ----------ELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYL------------------- 213 (291)
T ss_pred ----------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHH-------------------
Confidence 2233333333334445555555555555555 3444 3445555555554
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 658 (677)
..+++++|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5555555555555555555554444455555555444555555555555555554
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=2.8e-08 Score=91.00 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCC
Q psy16607 516 NDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 516 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
.+.+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+..++ ..+.+|.++|.++.
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-------- 83 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-------- 83 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH--------
Confidence 344555555665554444444 5678999999999999999999999999832222 24568999999999
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCC
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA-------REGHIE-------RASTYLQAAAASSPY 658 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~ 658 (677)
..|++++|+..+++++.+.|.....+.++|.++. ..|+++ +|+.+|++++..+|.
T Consensus 84 -----------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 84 -----------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred -----------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999988 777766 666777778888886
Q ss_pred Ch
Q psy16607 659 LY 660 (677)
Q Consensus 659 ~~ 660 (677)
+.
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 64
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.96 E-value=1.8e-08 Score=92.54 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=99.3
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~ 612 (677)
+.....++.+|..+...|++++|+.+|++++....++. ...++..+|.++. ..|++++|+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~ 92 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-------------------SNGEHDKAL 92 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-------------------HcCCHHHHH
Confidence 35567889999999999999999999999998432322 3578999999998 999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 613 QCLHLALSIDSSHGLSQNNLAVLEAREGH--------------IERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
..+++++...|.+...+..+|.++...|+ +++|++++++++..+|++ +...+..+...|
T Consensus 93 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 93 EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 99999999999999999999999999887 688999999999999987 334444444444
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.95 E-value=3.1e-09 Score=81.09 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy16607 572 AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQ 650 (677)
Q Consensus 572 ~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 650 (677)
++..|..+|.++. ..|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++
T Consensus 2 ~a~~~~~~g~~~~-------------------~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYF-------------------QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHH-------------------HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 5678999999998 9999999999999999999999999999999999999 7999999999
Q ss_pred HHHHhCC
Q psy16607 651 AAAASSP 657 (677)
Q Consensus 651 ~al~~~p 657 (677)
++++++|
T Consensus 63 ~al~l~P 69 (69)
T PF13414_consen 63 KALKLDP 69 (69)
T ss_dssp HHHHHST
T ss_pred HHHHcCc
Confidence 9999998
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.95 E-value=2.1e-08 Score=86.02 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHH
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIG 432 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 432 (677)
+++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 33444444444444444444444444444332 2334444444444444444444444444444332 33344444
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 433 VNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
.++...|++++|+.++++++...|++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 44444444444444444444444443
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.7e-08 Score=94.80 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~ 596 (677)
...+.-+.-++.-+..+|++.+-|..||.+|...|++..|...|.++++ +.|++++.+..++.++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~------------ 201 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALY------------ 201 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHH------------
Confidence 4467777888888999999999999999999999999999999999999 89999999999999876
Q ss_pred hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
.-.......++...+++++..+|.+..+.+.||..++..|++.+|...++..++..|.+..
T Consensus 202 ----~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 202 ----YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred ----HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 0112334678999999999999999999999999999999999999999999999887653
No 140
>KOG1070|consensus
Probab=98.94 E-value=2.9e-07 Score=102.52 Aligned_cols=235 Identities=12% Similarity=0.070 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCc----HHHHHHHHHHHHHcCChhHHHHHH
Q psy16607 341 REAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC-YPNE----VTIMTEMARIFEGLNNMPMSVKYY 414 (677)
Q Consensus 341 ~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 414 (677)
.+..+-|++.+...| ..-.|........+.++.++|.+..++++.. ++.. ..+|..+-++...-|.-+...+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 334556666666677 5566777777777777888888888877753 3322 234555555555556666777778
Q ss_pred HHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccch
Q psy16607 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 494 (677)
Q Consensus 415 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 494 (677)
++|.+... ....+..|..+|...+++++|.++++.+++...+...+|..++..+++.++-++|...+.+|+..-|..+.
T Consensus 1521 eRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 87776543 35667778888888888888888888888887777888888888888888888888888888888877544
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
.......+.+-. +.|+.+.+...|+..+.-+|...+.|.-+...-.+.|+.+.+..+|++++.+...+....
T Consensus 1600 v~~IskfAqLEF--------k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1600 VEFISKFAQLEF--------KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred HHHHHHHHHHHh--------hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 666656665554 888888888888888888888888888888888888888888888888888666666665
Q ss_pred HHHHHHHHHH
Q psy16607 575 VWYNISHVAI 584 (677)
Q Consensus 575 ~~~~l~~~~~ 584 (677)
.++..-.-|.
T Consensus 1672 fffKkwLeyE 1681 (1710)
T KOG1070|consen 1672 FFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 141
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.94 E-value=5.3e-06 Score=80.25 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=169.3
Q ss_pred cCCHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16607 337 LGLIREAQQQFNSALNQFTD---IEAFIRMIRVYIRLDQPIRAIDIGRNALD--CYPNEVTIMTEMARIFEGLNNMPMSV 411 (677)
Q Consensus 337 ~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 411 (677)
.+.+..+...+...+...+. .......+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 47788888888888887774 68889999999999999999999999987 67888899999999999999999999
Q ss_pred HHHHHHHHhCcCCHHHHHHHHH-HHHhCCChHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 412 KYYKLILKRDATCMEAIACIGV-NHFYNDQPEVALLFYRRLLQMGL---YNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 412 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877555666666 89999999999999999988776 3455566666666777777777777777777
Q ss_pred hhcc-cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 488 LALN-ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 488 ~~p~-~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..+. . ...+..++..+. ..++++.|+..+..++...|.....+..++..+...+.++++...+.+++.
T Consensus 196 ~~~~~~--~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDD--AEALLNLGLLYL--------KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccc--hHHHHHhhHHHH--------HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7766 4 556666666665 556666666666666666666555555555555544556666666666555
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.5e-08 Score=92.79 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC---ChHHHHHHHH
Q psy16607 373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND---QPEVALLFYR 449 (677)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 449 (677)
.+..+.-++.-+..+|++.+.|..+|.+|...|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3445555666677777777777777777777777777777777777777777777777777666543 3456777777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+++..+|.+..+...+|..++..|+|.+|+..++..++..|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 7777777777777777777777888888887777777777665
No 143
>KOG2471|consensus
Probab=98.92 E-value=2.3e-07 Score=92.53 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhh-CcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKA-CEF-------RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ--------- 353 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~-~p~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 353 (677)
+..+-...++..|++.+|.+++...--. .+. .....++++|.++++.|.|.-+..+|.++++.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 3344445566678888888877654322 111 01122267888888888888888888888851
Q ss_pred CC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607 354 FT----------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403 (677)
Q Consensus 354 ~p----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (677)
.| ..+++++.|..|...|++-.|.++|.++++.+-.++..|..++.++..
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11 356778888888888888888888888888888888888888887754
No 144
>KOG1941|consensus
Probab=98.92 E-value=4.2e-07 Score=87.48 Aligned_cols=297 Identities=13% Similarity=0.085 Sum_probs=210.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----C---CHHHHHHHHHH
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEF--RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF----T---DIEAFIRMIRV 366 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~la~~ 366 (677)
|.-+++..++++|+..+.+.+..-.. .....+-.+..++..+|.|++++..--..+... . ..+++.++++.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678999999999888865421 111222335567788888888876654444422 2 45788899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHH
Q psy16607 367 YIRLDQPIRAIDIGRNALDCYPNE-----VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNH 435 (677)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 435 (677)
+.+..++.+++.+-+..+...... ..+...++.++.-++.++++++.|+++++....+ ..++..+|.++
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 999999999999888777654322 3467778999999999999999999999875433 45678899999
Q ss_pred HhCCChHHHHHHHHHHHHcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHH
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLY----N------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNI 501 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l 501 (677)
....++++|+.+..++.++... + .-+++.++..+..+|....|.++.+++.++.-.. ........+
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 9999999999999888875322 2 2456778889999999999999999887654222 234556677
Q ss_pred HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHHhhcc
Q psy16607 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDM-----VVTCFERALSLALNE 570 (677)
Q Consensus 502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~p 570 (677)
+.+|. ..|+.+.|..-|+.+..... ....++...+.++....-..+ |++.-+++++++..-
T Consensus 253 aDIyR--------~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 253 ADIYR--------SRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHH--------hcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 88887 89999999999998874322 124456666777666554444 888888888754222
Q ss_pred c----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 571 N----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 571 ~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
. -...+..++.+|. ..|.-++-...+.++-
T Consensus 325 G~K~~vlK~hcrla~iYr-------------------s~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYR-------------------SKGLQDELRAHVVRAH 358 (518)
T ss_pred hhhHHHHHHHHHHHHHHH-------------------hccchhHHHHHHHHHH
Confidence 1 2255777888886 7776666555555543
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=7.8e-08 Score=85.96 Aligned_cols=198 Identities=12% Similarity=0.154 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 470 (677)
...++..|..|-..|-+.-|.-.|.+++.+.|+-++++..+|..+...|+++.|.+.|+..++++|....++.+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607 471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550 (677)
Q Consensus 471 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 550 (677)
.-|++.-|.+.+.+-.+.+|++.+...|..+... .-++.+|...+.+--+...+...-|+..+..+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-----------k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--- 210 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-----------KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--- 210 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-----------hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH---
Confidence 9999999999999999999998666666555433 34677776665544433333333333332222
Q ss_pred cCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 551 QQYDMVVTCFERALSLALN-----ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 551 g~~~~A~~~~~~al~~~~~-----p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
|+..+ ...++++..-+.+ ..-.+.++.+|..+. ..|+.++|...|+-++..+
T Consensus 211 gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l-------------------~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 211 GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYL-------------------SLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-------------------ccccHHHHHHHHHHHHHHh
Confidence 22211 1233333331111 112355777777777 8888888888888777643
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=3.9e-08 Score=90.34 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
....++.+|..+...|++++|+.+|++++...|+. ....++..+|.++. ..|++++|+..+++++...|.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA--------SNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCccc
Confidence 34455556666666666666666666666554432 11345666666665 6666666666666666666666
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
...+..+|.++...|+...+...++.++
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence 6666666666666666555554444443
No 147
>KOG3617|consensus
Probab=98.91 E-value=1.2e-06 Score=92.69 Aligned_cols=281 Identities=15% Similarity=0.119 Sum_probs=163.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (677)
...|.....+|..++|+.+|++.-. +-.+-..|...|.+++|.++.+.-=.+. -...|++.|.-+...++.
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 3456666777888888888887633 3345556666666666665544321111 133456666666666666
Q ss_pred hHHHHHHHHH----------HHhCcC----------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-------------
Q psy16607 408 PMSVKYYKLI----------LKRDAT----------CMEAIACIGVNHFYNDQPEVALLFYRRLLQM------------- 454 (677)
Q Consensus 408 ~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------- 454 (677)
+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..+-..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 6666666653 222332 2344455566666667777766666655332
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607 455 --------GLYNAELFNNLALCCFYSQQYDMVVTCFERA------LSLALNENAADVWYNISHVAILNALSTSVYNDQPE 520 (677)
Q Consensus 455 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~ 520 (677)
...+..+.+.+|+.|...|++.+|+.+|.++ +++..++.+.+-+.+++... ...+.-
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s---------~~~d~v 1025 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS---------GGSDLV 1025 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc---------CchhHH
Confidence 2345678899999999999999999988775 44555544444444444332 234445
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHH--------HHHHhhcc-chHHHHHHHHHHHHHhhcCCC
Q psy16607 521 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER--------ALSLALNE-NAADVWYNISHVAIITECSPF 591 (677)
Q Consensus 521 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~p-~~~~~~~~l~~~~~~~~~~p~ 591 (677)
.|..+|++.- .....-..+|.+.|.+.+|++.--+ .+...+++ .++..+..-+..+.
T Consensus 1026 ~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~------- 1091 (1416)
T KOG3617|consen 1026 SAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE------- 1091 (1416)
T ss_pred HHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH-------
Confidence 5555555431 1111223455666666666654211 11111233 34555555555555
Q ss_pred CcccchhhhHHhcCCCHHHHHHHHH------HHHcc----------------CCC---------ChHHHHHHHHHHHHcC
Q psy16607 592 SFSTHTSYLFIQGISDTRLAIQCLH------LALSI----------------DSS---------HGLSQNNLAVLEAREG 640 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~~~A~~~~~------~al~~----------------~p~---------~~~~~~~la~~~~~~g 640 (677)
...+|++|...+- .++.+ .|. ...++..+|.++.++|
T Consensus 1092 ------------~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG 1159 (1416)
T KOG3617|consen 1092 ------------NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQG 1159 (1416)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 5666666655433 23322 111 1256788999999999
Q ss_pred CHHHHHHHHHHH
Q psy16607 641 HIERASTYLQAA 652 (677)
Q Consensus 641 ~~~~A~~~~~~a 652 (677)
.|..|-+-|.+|
T Consensus 1160 ~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1160 AYHAATKKFTQA 1171 (1416)
T ss_pred chHHHHHHHhhh
Confidence 999999888876
No 148
>KOG1070|consensus
Probab=98.91 E-value=2.1e-07 Score=103.62 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN----AELFNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~ 481 (677)
-.+..+.|++.+.-+|+..-.|..+...+...++.++|.+.+++++.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344566777888888888888888888888888888888888888863 3322 24555555555566767777788
Q ss_pred HHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy16607 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561 (677)
Q Consensus 482 ~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 561 (677)
|++|.+.+.. ..++..|..+|. ..+++++|.++|+.+++........|..++..+.+..+-+.|...+.
T Consensus 1520 FeRAcqycd~---~~V~~~L~~iy~--------k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1520 FERACQYCDA---YTVHLKLLGIYE--------KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHhcch---HHHHHHHHHHHH--------HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888776544 667777888887 78888888888888888777788888888888888888888888888
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 641 (677)
Q Consensus 562 ~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 641 (677)
+|+......++.......+.+-. +.|+.+.+...|+-.+...|.-.+.|.-+...-.+.|+
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEF-------------------k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEF-------------------KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHh-------------------hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 88883222236666667777666 88888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhC
Q psy16607 642 IERASTYLQAAAASS 656 (677)
Q Consensus 642 ~~~A~~~~~~al~~~ 656 (677)
.+.++.+|++++.+.
T Consensus 1650 ~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888888764
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.90 E-value=1.8e-08 Score=82.03 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
+++.+|.++...|++++|+..+++++. ..|.+..++..+|.++. ..|++++|+..++++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYY-------------------KLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence 477899999999999999999999998 78888899999999998 999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607 619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 658 (677)
+...|.+..++..+|.++...|++++|...+.++++.+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999988874
No 150
>KOG2471|consensus
Probab=98.90 E-value=3.2e-06 Score=84.68 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
++-..+.+-..+|+.-.|+..-++.+. .|+-..++..+|.+|... ++.-+.+..+|...+.--
T Consensus 511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq---~~~lS~~~kfLGHiYAaE--------------AL~lldr~seA~~HL~p~ 573 (696)
T KOG2471|consen 511 IFANMAYVELELGDPIKALSAATKLLQ---LADLSKIYKFLGHIYAAE--------------ALCLLDRPSEAGAHLSPY 573 (696)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHh---hhhhhhHHHHHHHHHHHH--------------HHHHcCChhhhhhccChh
Confidence 344566677788999999999999886 577788888888888622 223334444443333220
Q ss_pred H-----------------------ccCCC----------C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Q psy16607 619 L-----------------------SIDSS----------H-----GLSQNNLAVLEAREGHIERASTYLQAAAASSP--Y 658 (677)
Q Consensus 619 l-----------------------~~~p~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~ 658 (677)
+ .++|. . ...+++||.++.-+|++++|..++..+..+-| .
T Consensus 574 ~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v 653 (696)
T KOG2471|consen 574 LLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLV 653 (696)
T ss_pred hcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccc
Confidence 0 11111 1 23578999999999999999999999999888 5
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q psy16607 659 LYETHYNQAVISNLVSVIP 677 (677)
Q Consensus 659 ~~~~~~~la~~~~~~G~ip 677 (677)
++++......+-.++|+.|
T Consensus 654 ~~~A~~lavyidL~~G~~q 672 (696)
T KOG2471|consen 654 NVQATVLAVYIDLMLGRSQ 672 (696)
T ss_pred cHHHHHHHHHHHHhcCCCc
Confidence 6677776667777888764
No 151
>KOG3081|consensus
Probab=98.90 E-value=1.2e-06 Score=81.43 Aligned_cols=260 Identities=13% Similarity=0.122 Sum_probs=178.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16607 331 GKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS 410 (677)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (677)
.+-++..|+|..++..-.+.-...........+.+.|..+|++..-+......- .....+...++.....-++.++-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 455666777777776666554443456666777777777777665544433321 11234445555555555555554
Q ss_pred HHHHHHHHHhC-c-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607 411 VKYYKLILKRD-A-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488 (677)
Q Consensus 411 ~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 488 (677)
+.-..+.+... . .+......-+.++...|++++|++..... .+.++...-..++.++.+.+-|...++++.++
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444433322 2 23344455567888889999998877763 34456666677888899999999999999888
Q ss_pred hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607 489 ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568 (677)
Q Consensus 489 ~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 568 (677)
+.+. .+..++..+. ... ...+++.+|.-+|++.-+..|..+...+.++.|+..+++|++|...++.++. .
T Consensus 167 ded~----tLtQLA~awv-~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--k 236 (299)
T KOG3081|consen 167 DEDA----TLTQLAQAWV-KLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--K 236 (299)
T ss_pred chHH----HHHHHHHHHH-HHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence 7543 3444555553 000 1335689999999999998999999999999999999999999999999999 8
Q ss_pred ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH-HHHHHHccCCCChH
Q psy16607 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ-CLHLALSIDSSHGL 627 (677)
Q Consensus 569 ~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~-~~~~al~~~p~~~~ 627 (677)
++++++.+.++-.+-. ..|...++.. .+.+.....|.++.
T Consensus 237 d~~dpetL~Nliv~a~-------------------~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 237 DAKDPETLANLIVLAL-------------------HLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred cCCCHHHHHHHHHHHH-------------------HhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999988877 7887766554 55566666777653
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.89 E-value=9e-08 Score=95.44 Aligned_cols=214 Identities=12% Similarity=0.105 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--C----cHHHHHHHHHHHHHcCChhHHHH
Q psy16607 339 LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP--N----EVTIMTEMARIFEGLNNMPMSVK 412 (677)
Q Consensus 339 ~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~ 412 (677)
++++|...|.++ |.+|...+++++|...|.++....- . -...+...+.++.+. ++++|+.
T Consensus 30 ~~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~ 95 (282)
T PF14938_consen 30 DYEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 566666666665 5666666777777777766654321 1 122344555555444 8888888
Q ss_pred HHHHHHHhCcC------CHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHH
Q psy16607 413 YYKLILKRDAT------CMEAIACIGVNHFYN-DQPEVALLFYRRLLQMGLY--N----AELFNNLALCCFYSQQYDMVV 479 (677)
Q Consensus 413 ~~~~al~~~p~------~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~ 479 (677)
+|++++.+.-. -...+..+|.+|... |++++|+++|++++..... . ...+..+|.++...|+|++|+
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 88888876322 155778889999998 9999999999999986322 1 356778999999999999999
Q ss_pred HHHHHHHhhhccc-----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHh
Q psy16607 480 TCFERALSLALNE-----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFY 549 (677)
Q Consensus 480 ~~~~~al~~~p~~-----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 549 (677)
..|+++....-++ .....+...+.++. ..|++..|...+++....+|.. ......+..++..
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L--------~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHL--------AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH--------HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 9999988754322 11233455566665 8899999999999999888743 3344555555543
Q ss_pred --ccCHHHHHHHHHHHHHHhhccchHHHH
Q psy16607 550 --SQQYDMVVTCFERALSLALNENAADVW 576 (677)
Q Consensus 550 --~g~~~~A~~~~~~al~~~~~p~~~~~~ 576 (677)
...+.+|+.-|++... +++-...++
T Consensus 248 ~D~e~f~~av~~~d~~~~--ld~w~~~~l 274 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISR--LDNWKTKML 274 (282)
T ss_dssp T-CCCHHHHCHHHTTSS-----HHHHHHH
T ss_pred CCHHHHHHHHHHHcccCc--cHHHHHHHH
Confidence 4568888888887766 444444333
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.88 E-value=1.1e-07 Score=84.61 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=90.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhCCChH
Q psy16607 369 RLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPE 442 (677)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 442 (677)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677778877888888888877 4466778888888888888888888888876543 456777888888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
+|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888865 33344556777788888888888888888888764
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=98.88 E-value=3.6e-08 Score=85.76 Aligned_cols=112 Identities=8% Similarity=-0.090 Sum_probs=98.9
Q ss_pred HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607 531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610 (677)
Q Consensus 531 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~ 610 (677)
.+.++.-+..+..|.-++..|++++|...|.-... .+|.+.+.|..||.|+. .+++|++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q-------------------~~k~y~~ 89 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQ-------------------LKKQFQK 89 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH-------------------HHHHHHH
Confidence 34455567788889999999999999999999888 88999999999999998 9999999
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
|+..|..+..++++++...+..|.|+..+|+.++|+.+|+.+++ .|.+....-
T Consensus 90 Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 90 ACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 99999999999999999999999999999999999999999998 577655443
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=5.6e-08 Score=89.00 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHH
Q psy16607 340 IREAQQQFNSALNQFT---DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKY 413 (677)
Q Consensus 340 ~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 413 (677)
+..+...+...++..+ ....++.+|.++...|++++|+..|++++.+.|+. ..++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444433332 34555666666666666666666666666555432 23566666666666666666666
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 414 YKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 414 ~~~al~~~p~~~~~~~~la~~~~ 436 (677)
|++++.+.|.....+..+|.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 66666666666666666666665
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.87 E-value=9.7e-08 Score=102.13 Aligned_cols=126 Identities=14% Similarity=0.033 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh
Q psy16607 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ--------QYDMVVTCFERALSLALNENAADVWYNISHVAIITE 587 (677)
Q Consensus 516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~ 587 (677)
.+....|+.+|+++++.+|+++.++-.++.++.... +...+.....+++.+..++..+.++..+|..+.
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~--- 431 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL--- 431 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH---
Confidence 345789999999999999999999999888776542 344566666666663346777888998998887
Q ss_pred cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
..|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 432 ----------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 432 ----------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ----------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 89999999999999999999 5889999999999999999999999999999999885
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=2.7e-08 Score=80.98 Aligned_cols=97 Identities=22% Similarity=0.362 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 473 (677)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+...+..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhhhc
Q psy16607 474 QYDMVVTCFERALSLAL 490 (677)
Q Consensus 474 ~~~~A~~~~~~al~~~p 490 (677)
++++|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555554443
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.86 E-value=1.6e-05 Score=77.65 Aligned_cols=292 Identities=11% Similarity=0.021 Sum_probs=216.4
Q ss_pred HHHHhcccCHHHHHHHHHHHHhh-CcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607 296 EYLYHHENDVASAMDLAVESTKA-CEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP 373 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 373 (677)
|++..-.|+-..|.+.-.+.-+. ..+..+.++..-++.-.-.|++++|.+-|+.++.... ..-.+..+-.-..+.|..
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccH
Confidence 33344468888999888887743 3344566666777888889999999999999876433 222333333444578999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC---cCC---HHHHHHHHHHH-HhCCChHHHHH
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD---ATC---MEAIACIGVNH-FYNDQPEVALL 446 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~---~~~~~~la~~~-~~~g~~~~A~~ 446 (677)
+.|+.+-+++....|.-+.++...-...+..|+++.|+++.+...... ++- ..+...-+... ....+...|..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 999999999999999999888888888899999999999998765432 221 11111112211 22346888999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHH-HHHH
Q psy16607 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV-ALLF 525 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~-A~~~ 525 (677)
...++.++.|+....-..-+..+++.|+..++-.+++.+.+..|.. .+ +..|. +.+.|+... =++-
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~i----a~lY~------~ar~gdta~dRlkR 317 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DI----ALLYV------RARSGDTALDRLKR 317 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HH----HHHHH------HhcCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 33 33333 114455432 2344
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605 (677)
Q Consensus 526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~ 605 (677)
.++...+.|++.+....++..-...|+|..|..--+.+.. ..|.. .++..++.+-. ...
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre-s~~lLlAdIee------------------Aet 376 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE-SAYLLLADIEE------------------AET 376 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh-hHHHHHHHHHh------------------hcc
Confidence 4555578899999999999999999999999999888887 55543 44555666554 156
Q ss_pred CCHHHHHHHHHHHHcc
Q psy16607 606 SDTRLAIQCLHLALSI 621 (677)
Q Consensus 606 g~~~~A~~~~~~al~~ 621 (677)
|+-.+....+-+++..
T Consensus 377 GDqg~vR~wlAqav~A 392 (531)
T COG3898 377 GDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchHHHHHHHHHHhcC
Confidence 9999999999999874
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=1.8e-08 Score=76.75 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhCc
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKLILKRDA 422 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 422 (677)
..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445555555555555555555555555555555555555555555555 45555555555555544
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.83 E-value=1.8e-08 Score=75.66 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=54.2
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 999999999999999999999999999999999999999999999999999999985
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.82 E-value=2.2e-07 Score=82.63 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=83.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcc
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALST 512 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~ 512 (677)
..++...+...++..++..|+. ..+.+.+|.+++..|++++|+..|++++...|++ ....+...++.++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~------ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL------ 96 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH------
Confidence 4566666766777777777766 3456667777777777777777777777766543 22345666777776
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
..|++++|+..++. +...+..+..+..+|.++...|++++|+..|++++
T Consensus 97 --~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 --QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77778877777755 33444556677778888888888888888888764
No 162
>KOG3081|consensus
Probab=98.81 E-value=1.7e-06 Score=80.40 Aligned_cols=255 Identities=14% Similarity=0.055 Sum_probs=170.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHH
Q psy16607 365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA 444 (677)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 444 (677)
+-++-.|+|..++....+.-... ........+.+.|..+|++...+......- .....+...++.....-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44556788888887776654333 567777888888888888776655443322 12345556666666666666655
Q ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHH
Q psy16607 445 LLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVA 522 (677)
Q Consensus 445 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A 522 (677)
+.-..+.+... ..+......-+.+|...|++++|.+...+... .++...-..++. ++.+.+-|
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-------lE~~Al~VqI~l--------k~~r~d~A 156 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-------LEAAALNVQILL--------KMHRFDLA 156 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-------HHHHHHHHHHHH--------HHHHHHHH
Confidence 55544444322 22334555567788888999999888877332 333333334444 67778888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607 523 LLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS 598 (677)
Q Consensus 523 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 598 (677)
...++++.+.+.+ ..+..||.++.+ .+++.+|.-+|+..-+ ..+..+......+.|.+
T Consensus 157 ~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l-------------- 218 (299)
T KOG3081|consen 157 EKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHL-------------- 218 (299)
T ss_pred HHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHH--------------
Confidence 8888888776544 344445555543 2457788888888776 56777778888888888
Q ss_pred hhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChH
Q psy16607 599 YLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS-TYLQAAAASSPYLYE 661 (677)
Q Consensus 599 ~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 661 (677)
.+|++++|...++.++..++++++++.++-.+-...|.-.++. +...+.....|+++-
T Consensus 219 -----~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 219 -----QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred -----HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 8888888888888888888888888888888777777765554 445666666777654
No 163
>KOG2053|consensus
Probab=98.79 E-value=0.0002 Score=77.55 Aligned_cols=224 Identities=13% Similarity=0.015 Sum_probs=144.0
Q ss_pred cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHH
Q psy16607 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDI 379 (677)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~ 379 (677)
..+++.+|+....+.++.. ++...+....|..+.++|+.++|..+++..-...+ +..++-.+-.+|..++++++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 3588999999999999999 45566668889999999999999977766555555 777888899999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-CCChH---------HHHHHHH
Q psy16607 380 GRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPE---------VALLFYR 449 (677)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~~~~ 449 (677)
|++++..+|. -+.+..+-.+|.+.+.|.+-.+.--+..+..|+++-.+.....+..+ ....+ -|...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999997 77888888888888887766555555555667665544444333332 22222 2334444
Q ss_pred HHHHcC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH-HhhhcccchHHHH-HHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607 450 RLLQMG-LYNAE-LFNNLALCCFYSQQYDMVVTCFERA-LSLALNENAADVW-YNISHVAILNALSTSVYNDQPEVALLF 525 (677)
Q Consensus 450 ~al~~~-~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~-~~l~~~~~l~~l~~~~~~~~~~~A~~~ 525 (677)
+.++.. +-... =....-.++..+|++++|...+..- .+..+.. .... ......+. ..+++.+-.+.
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~--~~~l~~~~~dllk--------~l~~w~~l~~l 248 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA--NLYLENKKLDLLK--------LLNRWQELFEL 248 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHH--------HhcChHHHHHH
Confidence 444444 21111 1122234555677777777777332 2222221 2222 22222333 45666666666
Q ss_pred HHHHHHcCCCc
Q psy16607 526 YRRLLQMGLYN 536 (677)
Q Consensus 526 ~~~al~~~p~~ 536 (677)
..+++..++++
T Consensus 249 ~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 249 SSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhCCcc
Confidence 66666666655
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=98.79 E-value=4.8e-07 Score=91.76 Aligned_cols=160 Identities=13% Similarity=0.062 Sum_probs=133.6
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---ccCC-CHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCc
Q psy16607 327 KVQLGKCYFSLGL---IREAQQQFNSAL---NQFT-DIEAFIRMIRVYIRL---------DQPIRAIDIGRNALDCYPNE 390 (677)
Q Consensus 327 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~p-~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 390 (677)
.+..|...+..+. .+.|+.+|.+++ ..+| ...++..++.|+... ....+|.+..+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3677777766654 567899999999 7888 788888888888764 23567888999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH-H
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC-C 469 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~ 469 (677)
+.++..+|.+....++++.|...|++++.++|+.+.+++..|.++...|+.++|++.++++++++|....+-...-.+ .
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876654444444 4
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy16607 470 FYSQQYDMVVTCFERAL 486 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al 486 (677)
+-....+.|+..|-+-.
T Consensus 418 ~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 418 YVPNPLKNNIKLYYKET 434 (458)
T ss_pred HcCCchhhhHHHHhhcc
Confidence 44566777887776543
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.78 E-value=3.2e-07 Score=93.02 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595 (677)
Q Consensus 516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~ 595 (677)
.....+|.+..+++++++|.++.++..+|.++...++++.|...|++++. ++|+.+.+|+..|.+..
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~----------- 383 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHF----------- 383 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHH-----------
Confidence 34567889999999999999999999999999999999999999999999 99999999999999988
Q ss_pred chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy16607 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERASTYLQAAAA 654 (677)
Q Consensus 596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 654 (677)
..|+.++|++.++++++++|....+-...-++ .+-....++|+..|-+--+
T Consensus 384 --------~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 384 --------HNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred --------HcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999999999999999999876554444344 4555678889988876544
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.77 E-value=1.6e-08 Score=80.40 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=41.4
Q ss_pred cCChhHHHHHHHHHHHhCcC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 404 LNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 404 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 481 (677)
.|+++.|+.+|+++++..|. +...++.+|.+++..|++++|+.++++ .+.++.+...++.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34555555555555555553 233444455555555555555555555 444444455555555555555555555555
Q ss_pred HHH
Q psy16607 482 FER 484 (677)
Q Consensus 482 ~~~ 484 (677)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.76 E-value=4.4e-07 Score=90.52 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=111.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC------C
Q psy16607 466 ALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL------Y 535 (677)
Q Consensus 466 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p------~ 535 (677)
|.+|...|++++|..+|.++....... .....+...+.++. ..++++|+.+|++++.+.- .
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k---------~~~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK---------KGDPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------hhCHHHHHHHHHHHHHHHHhcCcHHH
Confidence 455555566666666666554433211 12333444444443 3377777777777764321 1
Q ss_pred cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607 536 NAELFNNLALCCFYS-QQYDMVVTCFERALSLALNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610 (677)
Q Consensus 536 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~ 610 (677)
-..++..+|.+|... |++++|+++|++|++.....+. ..++..++.++. ..|+|++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-------------------~l~~y~~ 173 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-------------------RLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-------------------HTT-HHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-------------------HhCCHHH
Confidence 145677899999998 9999999999999986433332 356778888888 9999999
Q ss_pred HHHHHHHHHccCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 611 AIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 611 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
|++.|++.....-++ ...+...+.|+...|++..|...+++....+|...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999998753322 13456778899999999999999999999998653
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=3e-08 Score=78.87 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=40.3
Q ss_pred cCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607 551 QQYDMVVTCFERALSLALNEN--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628 (677)
Q Consensus 551 g~~~~A~~~~~~al~~~~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~ 628 (677)
|++++|+.+++++++ ..|. +...++.+|.|+. +.|++++|+..+++ ...++.+...
T Consensus 3 ~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~-------------------~~~~y~~A~~~~~~-~~~~~~~~~~ 60 (84)
T PF12895_consen 3 GNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYF-------------------QQGKYEEAIELLQK-LKLDPSNPDI 60 (84)
T ss_dssp T-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHH-------------------HTTHHHHHHHHHHC-HTHHHCHHHH
T ss_pred ccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHH-------------------HCCCHHHHHHHHHH-hCCCCCCHHH
Confidence 455555555555555 3331 3344445555555 55555555555555 4445555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 629 QNNLAVLEAREGHIERASTYLQA 651 (677)
Q Consensus 629 ~~~la~~~~~~g~~~~A~~~~~~ 651 (677)
.+.+|.++.++|++++|+..|++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 55555555555555555555554
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=4.5e-08 Score=73.53 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC
Q psy16607 362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC 424 (677)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 424 (677)
.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555543
No 170
>KOG0543|consensus
Probab=98.74 E-value=1.5e-07 Score=93.05 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT----------------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV 391 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 391 (677)
-..|..+++.|+|..|...|++++..-. ...++.+++.|+.++++|.+|+..+.++|..+|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 3567888888888888888888776321 022344444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
.+++..|.++..+|+|+.|+..|++++++.|.|-.+...+..+-.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444333
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.74 E-value=4.6e-07 Score=97.00 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHh--CcCCHHHHHHHHHHHHhCCChH
Q psy16607 373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN--------NMPMSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPE 442 (677)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ 442 (677)
..+|+.+|+++++++|++..++..++.++.... +...+.....+++.+ ++.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 445566666666666666555555555443321 223444445554443 5555666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.+
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 77777777777777 46677777777777777777777777777777775
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.73 E-value=1.9e-07 Score=81.38 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 467 (677)
++..+..+..|.-++..|++++|...|+-....+|.+.+.|..||.++...++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555566
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q psy16607 468 CCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~ 487 (677)
|+..+|+.+.|..+|+.++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666665555555
No 173
>KOG3617|consensus
Probab=98.73 E-value=7.8e-06 Score=86.68 Aligned_cols=313 Identities=12% Similarity=0.069 Sum_probs=201.9
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHccCCCHHHHHHHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQF------------NSALNQFTDIEAFIRMIRV 366 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~la~~ 366 (677)
|...|+.+.|.+..+-+- ++..| -++|....+..+.+-|.-++ +++.+.+. +.-...+.+
T Consensus 738 yvtiG~MD~AfksI~~Ik-----S~~vW-~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-----SDSVW-DNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-----hhHHH-HHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHH
Confidence 344599998887766543 34445 57777777666665555443 33332221 444566777
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607 367 YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446 (677)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 446 (677)
...+|..++|..+|++.-. +-.+-..|...|.+++|.+..+.--++ .--..+++.+..+...++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHH
Confidence 7889999999999998754 335667888999999998876542222 124578899999999999999999
Q ss_pred HHHHH----------HHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 447 FYRRL----------LQMGL----------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 447 ~~~~a----------l~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
+|+++ +..+| .++..|...|..+...|+.+.|+.+|..+- -|+.+..+..
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C 949 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKC 949 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEe
Confidence 99874 23333 245677788999999999999999998753 3445555544
Q ss_pred HhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH------hhccchHHHHHHHH
Q psy16607 507 LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------ALNENAADVWYNIS 580 (677)
Q Consensus 507 l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~p~~~~~~~~l~ 580 (677)
.+|+.++|....++ ..+-.+.+.+|..|...|++.+|+..|.+|-.. ....+..+-+.+++
T Consensus 950 --------~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 950 --------IQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred --------eccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77999988776654 456778899999999999999999998876542 22222223333333
Q ss_pred HHHHHhhc---CC--CCccc--chhhhHHhcCCCHHHHHHHHHHH-----H-----ccCC-CChHHHHHHHHHHHHcCCH
Q psy16607 581 HVAIITEC---SP--FSFST--HTSYLFIQGISDTRLAIQCLHLA-----L-----SIDS-SHGLSQNNLAVLEAREGHI 642 (677)
Q Consensus 581 ~~~~~~~~---~p--~~~~~--~~~~~~l~~~g~~~~A~~~~~~a-----l-----~~~p-~~~~~~~~la~~~~~~g~~ 642 (677)
..-..... .. ..-.. +.....|.+.|.+.+|++..=+. + .++| .++..+..-+..+....+|
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 21100000 00 00000 01112445666666666543221 1 2344 3577788888888899999
Q ss_pred HHHHHHHHHH
Q psy16607 643 ERASTYLQAA 652 (677)
Q Consensus 643 ~~A~~~~~~a 652 (677)
++|...+-.+
T Consensus 1097 ekAV~lL~~a 1106 (1416)
T KOG3617|consen 1097 EKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHHHH
Confidence 9998775443
No 174
>KOG4648|consensus
Probab=98.72 E-value=6.2e-09 Score=99.01 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
-..|.-|+++|.|++|+.+|.+.+..+| ++..+.+.+.+|+++..+..|..-+..++.++.....+|...+.+-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666666666666666666 666666666666666666666666666666666556666666666666666
Q ss_pred hhHHHHHHHHHHHhCcCCHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEA 427 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~ 427 (677)
..+|.+.++.++++.|++.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 666666666666666654443
No 175
>KOG0543|consensus
Probab=98.71 E-value=7e-07 Score=88.32 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
++.+++.|+.++++|.+|+....+++. .+|++..+++..|.++. .+|+|+.|+..|+++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l-------------------~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALL-------------------ALGEYDLARDDFQKA 317 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHH-------------------hhccHHHHHHHHHHH
Confidence 456667777777777777777777776 66777777777777766 777777777777777
Q ss_pred HccCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q psy16607 619 LSIDSSHGLSQNNLAVLEAREGHIERA-STYLQAAAASSP 657 (677)
Q Consensus 619 l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 657 (677)
+++.|.|..+...+..+-.+..++.+. .+.|..++...+
T Consensus 318 ~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 318 LKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 777777766666666666555544433 566666665443
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=5.6e-07 Score=91.95 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16607 332 KCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSV 411 (677)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 411 (677)
..+...++++.|+..|++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3344445666666666666655553 23345566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 412 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
.+.++++...|.+...|+.|+.+|...|+++.|+..++
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 66666666666666666666666666666666665554
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=7.9e-07 Score=86.45 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC---CHHHHHHHHHHHHhCCChHHH
Q psy16607 371 DQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT---CMEAIACIGVNHFYNDQPEVA 444 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A 444 (677)
|++++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.++...|++++|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 44444444444444444433 234444444444444444444444444433333 233344444444444444444
Q ss_pred HHHHHHHHHcCCCC
Q psy16607 445 LLFYRRLLQMGLYN 458 (677)
Q Consensus 445 ~~~~~~al~~~~~~ 458 (677)
...|+++++..|++
T Consensus 237 ~~~~~~vi~~yP~s 250 (263)
T PRK10803 237 KAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHCcCC
Confidence 44444444444433
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=7.9e-07 Score=86.46 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 536 NAELFNNLALCC-FYSQQYDMVVTCFERALSLALNENA---ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 536 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
+...++..+..+ .+.|+|++|+..|+..+. ..|+. +.+++.+|.+|. ..|++++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~-------------------~~g~~~~A 199 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNY-------------------NKGKKDDA 199 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHH-------------------HcCCHHHH
Confidence 346677777766 567999999999999999 77876 579999999999 99999999
Q ss_pred HHHHHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 612 IQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 612 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
+..|+++++..|++ +++++.+|.++...|++++|+..|+++++..|+...+..
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 99999999888775 688999999999999999999999999999999876543
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.66 E-value=0.00053 Score=67.39 Aligned_cols=290 Identities=13% Similarity=-0.003 Sum_probs=215.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQF---TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-VTIMTEMARIFEG 403 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 403 (677)
..-|.+-...|+-..|.+.-.+.-+.- ..+-++..-++.-.-.|+++.|.+-|+.++. +|+. .-.+..+-.-...
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 355666677889999988888776432 2555666677788888999999999998765 3322 2233344444567
Q ss_pred cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCH-----HHHHHHHHHHHHcCCH
Q psy16607 404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG---LYNA-----ELFNNLALCCFYSQQY 475 (677)
Q Consensus 404 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~-----~~~~~la~~~~~~g~~ 475 (677)
.|..+.|..+-+++....|.-..++...-......|+++.|+++.+...... ++.. ..+...+... ...+.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence 8999999999999999999988888888888889999999999998766532 2211 1111122222 23467
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q psy16607 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555 (677)
Q Consensus 476 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 555 (677)
..|...-..+.++.|+- ..+-..-+..+. +.|+..++-..++.+.+..|.- .++..|....--+.
T Consensus 246 ~~Ar~~A~~a~KL~pdl--vPaav~AAralf--------~d~~~rKg~~ilE~aWK~ePHP-----~ia~lY~~ar~gdt 310 (531)
T COG3898 246 ASARDDALEANKLAPDL--VPAAVVAARALF--------RDGNLRKGSKILETAWKAEPHP-----DIALLYVRARSGDT 310 (531)
T ss_pred HHHHHHHHHHhhcCCcc--chHHHHHHHHHH--------hccchhhhhhHHHHHHhcCCCh-----HHHHHHHHhcCCCc
Confidence 88888888999999886 666666666665 8999999999999999888753 24455555555556
Q ss_pred HHHHHHHHHHHh-hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607 556 VVTCFERALSLA-LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634 (677)
Q Consensus 556 A~~~~~~al~~~-~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 634 (677)
++.-++++-.+. +.|++.+....++..-. ..|++..|...-+.+....|. ..++..++.
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAl-------------------da~e~~~ARa~Aeaa~r~~pr-es~~lLlAd 370 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAAL-------------------DAGEFSAARAKAEAAAREAPR-ESAYLLLAD 370 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHH-------------------hccchHHHHHHHHHHhhhCch-hhHHHHHHH
Confidence 666666665432 67899988888888877 999999999999999988886 456777888
Q ss_pred HHHHc-CCHHHHHHHHHHHHH
Q psy16607 635 LEARE-GHIERASTYLQAAAA 654 (677)
Q Consensus 635 ~~~~~-g~~~~A~~~~~~al~ 654 (677)
+.... |+-.++...+-+++.
T Consensus 371 IeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 371 IEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhhccCchHHHHHHHHHHhc
Confidence 87765 999999999999986
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=7.7e-07 Score=90.97 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 438 (677)
....+..++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3344556666778999999999999998874 5667899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
++++.|+.+.++++...|.+...|..++.+|...|+++.|+..+..+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998887654
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=8.5e-07 Score=74.57 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC---c
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---N 536 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~---~ 536 (677)
+++.+|.++-..|+.++|+.+|++++...... ....++..+|..+. ..|++++|+..+++.+...|+ +
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr--------~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR--------NLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHCCCcccc
Confidence 44555556666666666666666665543332 22445555666665 666666666666666665555 5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
......++.++...|++++|+..+-.++.
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55556666667777777777766666554
No 182
>KOG2053|consensus
Probab=98.60 E-value=0.00016 Score=78.33 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=168.8
Q ss_pred HHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHH
Q psy16607 335 FSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY 413 (677)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 413 (677)
...+++.+|++...+.++..| ...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 456889999999999999999 5677788899999999999999888887777788888899999999999999999999
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHH---------HHHHHH
Q psy16607 414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN-LALCCFYSQQYDM---------VVTCFE 483 (677)
Q Consensus 414 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~---------A~~~~~ 483 (677)
|++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++..+.. +..++......+. |...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999998 8888888889999888887776666677788888765444 4444444433333 445556
Q ss_pred HHHhhh-cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607 484 RALSLA-LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL--QMGLYNAELFNNLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 484 ~al~~~-p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 560 (677)
+.++.. +-....++...+ .++. ..|++++|...+..-+ ...+.+...-..-...+...+++.+-.+..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl-~iL~--------~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYL-LILE--------LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHhccCCccchHHHHHHHH-HHHH--------hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 666555 222112222222 2222 5789999999995433 344444555556677778889999988888
Q ss_pred HHHHHHhhccch
Q psy16607 561 ERALSLALNENA 572 (677)
Q Consensus 561 ~~al~~~~~p~~ 572 (677)
.+.+. ..+++
T Consensus 250 ~~Ll~--k~~Dd 259 (932)
T KOG2053|consen 250 SRLLE--KGNDD 259 (932)
T ss_pred HHHHH--hCCcc
Confidence 88888 56665
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.59 E-value=1.2e-07 Score=72.03 Aligned_cols=66 Identities=23% Similarity=0.136 Sum_probs=61.4
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
..|++++|+..|++++..+|++.+++..+|.++.+.|++++|...+++++..+|+++..+..++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 789999999999999999999999999999999999999999999999999999998888777653
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.58 E-value=1.5e-06 Score=73.08 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EVTIMTEMARI 400 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~ 400 (677)
+.+|.++-..|+.++|+..|++++.... ...+++.+|..+..+|++++|+..+++.+...|+ +..+...++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 4455555555555555555555555332 2344555555555555555555555555555444 44444445555
Q ss_pred HHHcCChhHHHHHHHHHH
Q psy16607 401 FEGLNNMPMSVKYYKLIL 418 (677)
Q Consensus 401 ~~~~g~~~~A~~~~~~al 418 (677)
+...|++++|+..+-.++
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555554443
No 185
>KOG4648|consensus
Probab=98.58 E-value=3.4e-08 Score=94.11 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=126.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP 373 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 373 (677)
-|.-|+.+|+|++|+.+|.+.+...|.+.... .+.+.+|++...|..|..-+..++.++. ...+|...+.+-..+|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~-~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYH-INRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccch-hhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46678889999999999999999997655544 7999999999999999999999999987 889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHH---------HHHHHHHhCCChHHH
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA---------CIGVNHFYNDQPEVA 444 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------~la~~~~~~g~~~~A 444 (677)
.+|.+-++.++.+.|++.+..-.++.+.. ..++ +-+.+..|....+.. .-|..+...|.++.+
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~ 253 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVP 253 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccccc
Confidence 99999999999999987776554444322 2221 112222232222211 224444445555555
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+.++-+-+.....+..+..+ +..+.+..+++.++....+++..+|..
T Consensus 254 i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 254 VVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred eeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 55555444443333333333 455555555555555555555544443
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.54 E-value=1e-05 Score=70.88 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=122.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHH
Q psy16607 467 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ-MGLYNAELFNNLAL 545 (677)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~ 545 (677)
....+.=+++....-..+.+...|. ..-.+.++..+. +.|++.+|...|++++. ..-.++..+..++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT---vqnr~rLa~al~--------elGr~~EA~~hy~qalsG~fA~d~a~lLglA~ 132 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT---VQNRYRLANALA--------ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQ 132 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh---HHHHHHHHHHHH--------HhhhhhhhHHHHHHHhccccCCCHHHHHHHHH
Confidence 3334444555566666666677776 566778888887 88999999999999884 56678888999999
Q ss_pred HHHhccCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 546 CCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 546 ~~~~~g~~~~A~~~~~~al~~~~~p--~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
..+..+++..|...+++..+ .+| ..++....++..+. ..|++.+|...|+.++...|
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e--~~pa~r~pd~~Ll~aR~la-------------------a~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLME--YNPAFRSPDGHLLFARTLA-------------------AQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHhhccHHHHHHHHHHHhh--cCCccCCCCchHHHHHHHH-------------------hcCCchhHHHHHHHHHHhCC
Confidence 99999999999999999988 444 45567778888887 99999999999999999887
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 624 SHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 624 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
+ +.+....+..+.++|+.++|..-+....+
T Consensus 192 g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 192 G-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred C-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6 67778888999999988887766655443
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.50 E-value=6.4e-07 Score=69.02 Aligned_cols=67 Identities=22% Similarity=0.076 Sum_probs=62.5
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
+...+++++|++++++++.++|+++..|..+|.++...|++++|+..|+++++..|+++.+....+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3499999999999999999999999999999999999999999999999999999999988766554
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.49 E-value=4.5e-05 Score=71.52 Aligned_cols=165 Identities=11% Similarity=-0.009 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHH
Q psy16607 327 KVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IMTEMAR 399 (677)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~ 399 (677)
++..|...+..|++++|+..|+.+....| ...+...++.++++.+++++|+...++-+.++|.++. +++..|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 36778888888888888888888887776 5678888888888888888888888888888877654 4566666
Q ss_pred HHHHcC--------ChhHHHHHHHHHHHhCcCCH-----------------HHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 400 IFEGLN--------NMPMSVKYYKLILKRDATCM-----------------EAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 400 ~~~~~g--------~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
++...= -..+|+..|+..+...|++. ..-..+|..|.+.|.+..|+..++.+++.
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 655331 24567777888888888641 11235688899999999999999999998
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 455 GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 455 ~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.|+. .+++..+..+|..+|-.++|...-.-.-...|+
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 7664 467888889999999999987765433333344
No 189
>KOG2796|consensus
Probab=98.48 E-value=0.00022 Score=66.33 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=81.4
Q ss_pred cCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh--hc--cchHHHHHHHHHHHHHhhcC
Q psy16607 515 YNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LN--ENAADVWYNISHVAIITECS 589 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~--p~~~~~~~~l~~~~~~~~~~ 589 (677)
-.|.|.-.+..+.+.++.+ |.++.....+|.+-.+.|+.+.|..+|++.-+.. ++ .....+..+.+.++.
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l----- 263 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL----- 263 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-----
Confidence 5566666666666666655 4556666666677777777776766666444311 11 122344555555555
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
-.+++.+|...|.+++..+|.++.+.++.+.|+.-.|+..+|++..+.+++..|..
T Consensus 264 --------------g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 264 --------------GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred --------------cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66777777777777777777777777777777777777777777777777777754
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.48 E-value=2.1e-05 Score=68.99 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=92.6
Q ss_pred cCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 303 NDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF-T-DIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
=|++....-..+.+...|.. .-.+.+|..+...|++.||...|++++.-- - +...+..+++..+..+++..|...+
T Consensus 70 ldP~R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 70 LDPERHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred cChhHHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34455555555555544422 222567777777777777777777776622 2 6666777777777777777777777
Q ss_pred HHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607 381 RNALDCYPN--EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL 451 (677)
Q Consensus 381 ~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (677)
++..+.+|. .++....+|..+...|++.+|...|+.++...| .+.+....+..+.++|+..++..-+...
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 777766653 355666677777777777777777777777666 4555566666666777666655544433
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.45 E-value=5e-06 Score=70.96 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---H
Q psy16607 321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---I 393 (677)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 393 (677)
.....-++..|...+..|+|++|++.|+.+....| ...+.+.++.+|+..+++++|+..+++-++++|.++. +
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 33444457888888888999999988888888777 5678888888888889999998888888888887654 6
Q ss_pred HHHHHHHHHHcCC
Q psy16607 394 MTEMARIFEGLNN 406 (677)
Q Consensus 394 ~~~la~~~~~~g~ 406 (677)
++..|.++.....
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
No 192
>KOG4234|consensus
Probab=98.44 E-value=2.3e-06 Score=75.70 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=65.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607 543 LALCCFYSQQYDMVVTCFERALSLALNENA-----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL 617 (677)
Q Consensus 543 la~~~~~~g~~~~A~~~~~~al~~~~~p~~-----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~ 617 (677)
-|.-++..|+|++|..-|..|+. ..|.. ...+.+.|.+++ +++.++.|+..+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~i-------------------Kl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALI-------------------KLRKWESAIEDCSK 159 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHH-------------------HhhhHHHHHHHHHh
Confidence 45555666666666666666666 33322 233455566655 66777777777777
Q ss_pred HHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 618 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
+++++|.+..++...+.+|.++.++++|++.|++.++.+|...++.-..+
T Consensus 160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 77777766666666677777777777777777777777776665544333
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.44 E-value=0.0001 Score=69.12 Aligned_cols=174 Identities=11% Similarity=-0.001 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHH---HHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCME---AIA 429 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 429 (677)
.+..++.-|...++.|++++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788899999999999999999999999998865 468899999999999999999999999999998643 455
Q ss_pred HHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 430 CIGVNHFYND--------QPEVALLFYRRLLQMGLYNAE-----------------LFNNLALCCFYSQQYDMVVTCFER 484 (677)
Q Consensus 430 ~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~ 484 (677)
..|.+++..= -..+|+..++..+...|++.- --..+|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6666655432 135678888999999998641 124578999999999999999999
Q ss_pred HHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 485 ALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 485 al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
+++..|+. ...+++..+..+|. .+|-.++|...-.-.-...|++.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~--------~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYY--------ALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHH--------HhCChHHHHHHHHHHHhcCCCCc
Confidence 99987765 34567777777877 78888887766554444444443
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.44 E-value=6.1e-07 Score=68.00 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA 422 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 422 (677)
|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3333333333333333333333333333333333333333333333333333
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=5.7e-06 Score=78.25 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARI 400 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 400 (677)
+..|.-++..|+|.+|...|..-++..| ...+++.||.+++.+|++++|...|..+.+..|++ ++.++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 4555555556666666666666666555 34556666666666666666666666655554432 4556666666
Q ss_pred HHHcCChhHHHHHHHHHHHhCcCCHHH
Q psy16607 401 FEGLNNMPMSVKYYKLILKRDATCMEA 427 (677)
Q Consensus 401 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 427 (677)
...+|+.++|...|+++++..|....+
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 666666666666666666666654443
No 196
>KOG4234|consensus
Probab=98.43 E-value=2.7e-06 Score=75.28 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFE 402 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (677)
.-|.-++..|+|++|..-|..++..-| ....|.+.|.+.++++.++.|+..+.++++++|....++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 456777888888888888888888776 23456677888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHHhCcCCHHHHHHHHH
Q psy16607 403 GLNNMPMSVKYYKLILKRDATCMEAIACIGV 433 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 433 (677)
++..|++|++.|+++++.+|..-.+.-..+.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888888876554444433
No 197
>KOG2796|consensus
Probab=98.39 E-value=0.0001 Score=68.40 Aligned_cols=161 Identities=16% Similarity=0.243 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607 341 REAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419 (677)
Q Consensus 341 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 419 (677)
+..+..+++-+ ..+.+.+..++...|.|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+++-+
T Consensus 166 ESsv~lW~KRl-----~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 166 ESSIRLWRKRL-----GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred hhHHHHHHHHH-----HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44455555433 3456677777777888888888888888877 55677777888888888888888888885543
Q ss_pred hCc------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-
Q psy16607 420 RDA------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE- 492 (677)
Q Consensus 420 ~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 492 (677)
... ....+..+.+.++.-.+++..|...+.+++..++.++.+.++.+.|+...|+...|++.++.++...|..
T Consensus 241 ~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 241 VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 321 2345666778888888889999999999999999999999999999999999999999999999988876
Q ss_pred chHHHHHHHHHHHH
Q psy16607 493 NAADVWYNISHVAI 506 (677)
Q Consensus 493 ~~~~~~~~l~~~~~ 506 (677)
......+++..+|.
T Consensus 321 l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 321 LHESVLFNLTTMYE 334 (366)
T ss_pred hhhhHHHHHHHHHH
Confidence 22334555555554
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.37 E-value=2.2e-06 Score=65.99 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=33.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH
Q psy16607 365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA 427 (677)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 427 (677)
.+|...+++++|+.++++++..+|+++..+..+|.++...|++++|+..|+++++..|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344555555555555555555555555555555555555555555555555555555544443
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=1.6e-05 Score=75.17 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHH
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGV 433 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 433 (677)
.+..+.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777777777788888888888888877764 4677778888888888888888888877776654 677777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLYNAELF 462 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 462 (677)
+...+|+.++|...|+++++..|....+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777777777766543
No 200
>KOG2300|consensus
Probab=98.30 E-value=0.0061 Score=61.88 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=102.5
Q ss_pred HcCCHHHHHHHHHHHHhhhccc---c-hHHH--------HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc---CCC
Q psy16607 471 YSQQYDMVVTCFERALSLALNE---N-AADV--------WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM---GLY 535 (677)
Q Consensus 471 ~~g~~~~A~~~~~~al~~~p~~---~-~~~~--------~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~---~p~ 535 (677)
-.|-+++|.++-++++.....- . ...+ +..+..+.. -.|++.+|++....+.+. .|.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~l--------v~~~~~~al~~i~dm~~w~~r~p~ 358 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRL--------VRGDYVEALEEIVDMKNWCTRFPT 358 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHhCCc
Confidence 3466778888777776542211 0 1122 222333333 679999999888777643 343
Q ss_pred -------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607 536 -------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD--VWYNISHVAIITECSPFSFSTHTSYLFIQGIS 606 (677)
Q Consensus 536 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~--~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g 606 (677)
.+...+.+|......+.++.|...|..+.+.. ...+.. +-.+++..|. +.|
T Consensus 359 ~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL-------------------~~~ 418 (629)
T KOG2300|consen 359 PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYL-------------------RIG 418 (629)
T ss_pred hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHH-------------------Hhc
Confidence 34567788888889999999999999999842 223333 3457788887 766
Q ss_pred CHHHHHHHHHHHHccCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 607 DTRLAIQCLHLALSIDSSH----------GLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 607 ~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++..
T Consensus 419 ~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 419 DAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 65544444333 34432 2456777888888999999999999998876
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.30 E-value=2.8e-06 Score=86.20 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=65.9
Q ss_pred hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH---HHHHHHHHHHcCCHHH
Q psy16607 568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS---QNNLAVLEAREGHIER 644 (677)
Q Consensus 568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~ 644 (677)
.+|+++..|+++|.+|. ..|+|++|+..|+++++++|++.++ |+++|.+|..+|++++
T Consensus 70 ~dP~~a~a~~NLG~AL~-------------------~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-------------------SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred CCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 46889999999999999 9999999999999999999999865 9999999999999999
Q ss_pred HHHHHHHHHHh
Q psy16607 645 ASTYLQAAAAS 655 (677)
Q Consensus 645 A~~~~~~al~~ 655 (677)
|+.++++++++
T Consensus 131 Ala~LrrALel 141 (453)
T PLN03098 131 AADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHh
Confidence 99999999997
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.24 E-value=3.6e-05 Score=65.78 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIA 429 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 429 (677)
....++..|...++.|+|.+|++.|+.+....|.. ..+...++.+|.+.+++++|+..+++.++++|.++ -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45566666777777777777777777777666643 34566677777777777777777777777776653 3455
Q ss_pred HHHHHHHhCC
Q psy16607 430 CIGVNHFYND 439 (677)
Q Consensus 430 ~la~~~~~~g 439 (677)
..|.+++...
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 203
>KOG1914|consensus
Probab=98.23 E-value=0.0095 Score=61.43 Aligned_cols=348 Identities=11% Similarity=0.051 Sum_probs=200.1
Q ss_pred hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHHcCChHHHHH
Q psy16607 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIR-MIRVYIRLDQPIRAID 378 (677)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-la~~~~~~g~~~~A~~ 378 (677)
.+...+++..+.|++.....|.....| .......+...+|+...++|.+++..--+.+.|.. +..+-...++...+..
T Consensus 30 ~qt~~~~~~R~~YEq~~~~FP~s~r~W-~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~ 108 (656)
T KOG1914|consen 30 AQTQPIDKVRETYEQLVNVFPSSPRAW-KLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYRE 108 (656)
T ss_pred HccCCHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHH
Confidence 344589999999999999998777777 57788888899999999999999876555666543 3333334455444433
Q ss_pred ----HHHHHHHc---CCCcHHHHHHHHHHHHH---cC------ChhHHHHHHHHHHHhCcCCHH-HHHHH----------
Q psy16607 379 ----IGRNALDC---YPNEVTIMTEMARIFEG---LN------NMPMSVKYYKLILKRDATCME-AIACI---------- 431 (677)
Q Consensus 379 ----~~~~al~~---~p~~~~~~~~la~~~~~---~g------~~~~A~~~~~~al~~~p~~~~-~~~~l---------- 431 (677)
.|+-++.. ++.....|...+..+.. .| +.+.-.+.|++++..--.+.+ .|...
T Consensus 109 ~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ 188 (656)
T KOG1914|consen 109 KMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINII 188 (656)
T ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 34444433 34445566666555432 23 445556777777654322211 11000
Q ss_pred -H--HHHHhCCChHHHHH------------------------------------------------------------HH
Q psy16607 432 -G--VNHFYNDQPEVALL------------------------------------------------------------FY 448 (677)
Q Consensus 432 -a--~~~~~~g~~~~A~~------------------------------------------------------------~~ 448 (677)
| .+-.....|..|.. .|
T Consensus 189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay 268 (656)
T KOG1914|consen 189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY 268 (656)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 0 00011111222222 23
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607 449 RRLLQMGLYNAELFNNLALCCFYSQQ--------------YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514 (677)
Q Consensus 449 ~~al~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~ 514 (677)
++++..-+..+++|+..+..+...++ -+++..+|++++...... ....++.++..-. ...
T Consensus 269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE-----~~~ 342 (656)
T KOG1914|consen 269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEE-----SRY 342 (656)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHH-----Hhc
Confidence 33444444455666655555555544 566777777776543221 1222233322221 000
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
...+.+..-..+++++.....++ -+|..+-..-.+..-...|...|.++-+....+.+..+...+-.
T Consensus 343 ~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE------------ 410 (656)
T KOG1914|consen 343 DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME------------ 410 (656)
T ss_pred ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH------------
Confidence 22235556666777665443332 34455555555566677788888888763323323333333333
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHH
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--SPYLY-ETHYNQAVIS 670 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~-~~~~~la~~~ 670 (677)
+...++..-|...|+-.+...++.+..-......+...|+-..|..+|++++.. .|+.. +.|..+-.--
T Consensus 411 --------y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 411 --------YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred --------HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 337889999999999999999988888888888888889989999999998876 43332 4444443333
Q ss_pred HhcC
Q psy16607 671 NLVS 674 (677)
Q Consensus 671 ~~~G 674 (677)
...|
T Consensus 483 S~vG 486 (656)
T KOG1914|consen 483 SNVG 486 (656)
T ss_pred Hhcc
Confidence 3344
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.22 E-value=2.2e-05 Score=69.24 Aligned_cols=100 Identities=17% Similarity=0.021 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY---DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595 (677)
Q Consensus 519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~ 595 (677)
++.|.+.++.....+|.+++.+++-|.++..+.++ .++..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~------------------------------------- 49 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK------------------------------------- 49 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH-------------------------------------
Confidence 56677777777778888888877777777665433 11222
Q ss_pred chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHH
Q psy16607 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-----------IERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
-+++|+.-|++++.++|+..++++.+|.+|..++. +++|..+|++|.+.+|++...+.
T Consensus 50 -----------miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 50 -----------MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp -----------HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred -----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 22344444555555555555555555555554432 56666666666666666655444
Q ss_pred HH
Q psy16607 665 NQ 666 (677)
Q Consensus 665 ~l 666 (677)
.|
T Consensus 119 sL 120 (186)
T PF06552_consen 119 SL 120 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>KOG1586|consensus
Probab=98.22 E-value=0.00018 Score=65.80 Aligned_cols=128 Identities=11% Similarity=0.067 Sum_probs=86.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhc-cCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYS-QQYDMVVTCFERALSLALNENA----ADVWYNISHVA 583 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~p~~----~~~~~~l~~~~ 583 (677)
+..++++|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+....... -..+...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 45566777777776665543322 2344677777765 8899999999998874322111 12333344444
Q ss_pred HHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 584 ~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
. .+++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++
T Consensus 165 a-------------------~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 165 A-------------------QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 4 78899999999999887655543 335566778888889889999999999999
Q ss_pred CCChH
Q psy16607 657 PYLYE 661 (677)
Q Consensus 657 p~~~~ 661 (677)
|...+
T Consensus 226 P~F~d 230 (288)
T KOG1586|consen 226 PAFTD 230 (288)
T ss_pred Ccccc
Confidence 98754
No 206
>KOG4555|consensus
Probab=98.18 E-value=4.2e-05 Score=62.97 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
+-..|..+...|+.+.|++.|.+++. ..|..+.+|++.+..+. -.|+.++|++.+++++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~R-------------------Lq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALR-------------------LQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHH-------------------HcCChHHHHHHHHHHH
Confidence 33457777888888888888888888 77888888888888887 8888888888888888
Q ss_pred ccCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 620 SIDSSHG----LSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 620 ~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
++..+.. .++...|.+|...|+-+.|...|+.+.++....
T Consensus 105 eLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 105 ELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 8754432 467788888888888888888888888776544
No 207
>KOG2610|consensus
Probab=98.13 E-value=0.0019 Score=62.33 Aligned_cols=160 Identities=13% Similarity=-0.042 Sum_probs=108.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHhC
Q psy16607 363 MIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR-DATC---MEAIACIGVNHFYN 438 (677)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~ 438 (677)
-+.+....|++.+|....++.++..|.+.-++..--.++..+|+...-...+++++.. +++- .-+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3445555677777777788888888887777777777777788887777777777765 4443 23334556677777
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccC
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYN 516 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~ 516 (677)
|-|++|.+..++++++++.+.-+...++.++...|++.++.++..+.-..-... .....|...+.+++ ..
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i--------E~ 260 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI--------EG 260 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh--------cc
Confidence 888888888888888888887777778888888888888887776543221111 11222334445554 66
Q ss_pred CCHHHHHHHHHHHH
Q psy16607 517 DQPEVALLFYRRLL 530 (677)
Q Consensus 517 ~~~~~A~~~~~~al 530 (677)
+.|+.|++.|++-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 77777777777654
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.13 E-value=1e-05 Score=82.18 Aligned_cols=69 Identities=29% Similarity=0.333 Sum_probs=64.9
Q ss_pred cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHH---HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV---WYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~---~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
.+|+++..|+++|.+|...|+|++|+..|+++++ ++|++..+ |+++|.+|. .+|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya-------------------~LGr~ 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHA-------------------YREEG 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHH-------------------HcCCH
Confidence 5788999999999999999999999999999999 89998854 999999999 99999
Q ss_pred HHHHHHHHHHHcc
Q psy16607 609 RLAIQCLHLALSI 621 (677)
Q Consensus 609 ~~A~~~~~~al~~ 621 (677)
++|+.++++++++
T Consensus 129 dEAla~LrrALel 141 (453)
T PLN03098 129 KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999997
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=6.9e-06 Score=64.12 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh--c---cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL--N---ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~---p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
|+-..++.++|.+|...|++++|+.+|++++.+.. . |....++.++|.++. ..|++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-------------------~~g~~ 62 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-------------------RLGDY 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------------------HTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-------------------HcCCH
Confidence 34467889999999999999999999999998631 1 233567899999999 99999
Q ss_pred HHHHHHHHHHHcc
Q psy16607 609 RLAIQCLHLALSI 621 (677)
Q Consensus 609 ~~A~~~~~~al~~ 621 (677)
++|++++++++++
T Consensus 63 ~~A~~~~~~al~i 75 (78)
T PF13424_consen 63 EEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.11 E-value=5.4e-06 Score=64.76 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC----CC---ChHHHHHHHHHHHHcCCH
Q psy16607 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID----SS---HGLSQNNLAVLEAREGHI 642 (677)
Q Consensus 570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~ 642 (677)
|+...++.++|.+|. ..|++++|+.+|++++++. ++ ...++.++|.++...|++
T Consensus 2 ~~~a~~~~~la~~~~-------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 62 (78)
T PF13424_consen 2 PDTANAYNNLARVYR-------------------ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY 62 (78)
T ss_dssp HHHHHHHHHHHHHHH-------------------HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 455678899999998 9999999999999999752 22 246789999999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy16607 643 ERASTYLQAAAASS 656 (677)
Q Consensus 643 ~~A~~~~~~al~~~ 656 (677)
++|+.++++++++.
T Consensus 63 ~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 63 EEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999863
No 211
>KOG4555|consensus
Probab=98.11 E-value=0.00011 Score=60.50 Aligned_cols=97 Identities=11% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHHHHHH
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNH 435 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 435 (677)
+...|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|++.+.+++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34455666666777777777777777777777777777777777777777777777777765432 34556667777
Q ss_pred HhCCChHHHHHHHHHHHHcCC
Q psy16607 436 FYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~ 456 (677)
...|+.+.|..-|+.+-++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 777777777777766665543
No 212
>KOG1586|consensus
Probab=98.07 E-value=0.00073 Score=61.87 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=117.0
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDW-----WWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A 376 (677)
.+++++|.++|.++-....-... ..+...+.++.+.|.-.+| ...+...+.+|.+ +++.+|
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa-------------at~YveA~~cykk-~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA-------------ATTYVEAANCYKK-VDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH-------------HHHHHHHHHHhhc-cChHHH
Confidence 46888898888887644311000 1111222222222222222 3344444555544 588888
Q ss_pred HHHHHHHHHcCCCcHH------HHHHHHHHHHHc-CChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHH
Q psy16607 377 IDIGRNALDCYPNEVT------IMTEMARIFEGL-NNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEV 443 (677)
Q Consensus 377 ~~~~~~al~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 443 (677)
+.++++++++..+-.. .+..+|.+|..- .++++|+.+|+++-+..... ...+...+..-...++|.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887654322 345788888765 88999999999987764432 3345566777778899999
Q ss_pred HHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 444 ALLFYRRLLQMGLYNAE-------LFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 444 A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
|+..|+++....-++.. .++.-|.|++...+.-.+...+++..+++|.-
T Consensus 173 Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 99999998886655543 34556777777788888888899999998875
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.06 E-value=1.1e-05 Score=54.74 Aligned_cols=43 Identities=26% Similarity=0.080 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
++++..+|.+|...|++++|++.|+++++.+|++++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999999885
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.06 E-value=3.2e-05 Score=68.21 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607 373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN----------MPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439 (677)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 439 (677)
++.|.+.++.....+|.+.+.+++.|.++..+.+ +++|+.-|++++.++|+..++++++|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4567777777777788888877777777665533 455666677777777777777777777776554
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.03 E-value=0.0013 Score=67.26 Aligned_cols=186 Identities=12% Similarity=0.029 Sum_probs=94.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607 369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448 (677)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 448 (677)
+..+.+.-++..+++++++|+..++|..++.- ......+|.++|+++++....... ........|..-
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~------ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFW------ 247 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchh------
Confidence 34556666677777777777777777666542 223456677777776654332110 000000111100
Q ss_pred HHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607 449 RRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY 526 (677)
Q Consensus 449 ~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~ 526 (677)
........ ...+...+|.+..++|+.++|++.++..++..|......++.++..++. ..+.+.++...+
T Consensus 248 -e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL--------elq~Yad~q~lL 318 (539)
T PF04184_consen 248 -EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL--------ELQAYADVQALL 318 (539)
T ss_pred -hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH--------hcCCHHHHHHHH
Confidence 01110111 1233445666666666666666666666665554333556666666665 666666666666
Q ss_pred HHHHHc-CCCcHHHHHHHHHHHHh-------------cc---CHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607 527 RRLLQM-GLYNAELFNNLALCCFY-------------SQ---QYDMVVTCFERALSLALNENAADVWY 577 (677)
Q Consensus 527 ~~al~~-~p~~~~~~~~la~~~~~-------------~g---~~~~A~~~~~~al~~~~~p~~~~~~~ 577 (677)
.+.-+. -|+.+...+..+.+..+ .| --..|++.+.+|++ .+|.-+..+.
T Consensus 319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~YLL 384 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPKYLL 384 (539)
T ss_pred HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCchhhh
Confidence 654322 23444444443333222 11 01236677788887 7776665443
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.03 E-value=0.0012 Score=67.64 Aligned_cols=239 Identities=12% Similarity=-0.007 Sum_probs=146.5
Q ss_pred HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607 403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 482 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 482 (677)
+..+.+.-++.-++|++++|+.+.++..|+.- ......+|.++|+++++..... +.........|..-+
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e----- 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWE----- 248 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhh-----
Confidence 45566777888899999999999998887752 2334688999999988754221 111111111111111
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607 483 ERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 483 ~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~ 560 (677)
.+...+.+....+...++.+.. +.|+.++|++.++..++..|. +..+..+|..++...+.|.++...+
T Consensus 249 --~~~~Rdt~~~~y~KrRLAmCar--------klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 249 --AWHRRDTNVLVYAKRRLAMCAR--------KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred --hhhccccchhhhhHHHHHHHHH--------HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111223566778999998 999999999999999988775 4568999999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC---HHHHHHHHHHHHccCCCChHHHHHHH----
Q psy16607 561 ERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD---TRLAIQCLHLALSIDSSHGLSQNNLA---- 633 (677)
Q Consensus 561 ~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la---- 633 (677)
.+.-+. .-|..+...+..+.+.. .....++.+. ...+.|- -..|++.+.+|++.+|..+..+..+=
T Consensus 319 ~kYdDi-~lpkSAti~YTaALLka-Rav~d~fs~e-----~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil 391 (539)
T PF04184_consen 319 AKYDDI-SLPKSATICYTAALLKA-RAVGDKFSPE-----AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL 391 (539)
T ss_pred HHhccc-cCCchHHHHHHHHHHHH-HhhccccCch-----hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC
Confidence 986541 12455554444443322 0000000000 0012221 23578899999999998776544321
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 634 --VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 634 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
.-..+.|+ .||+.+---.+..=.+-+.++..|...+
T Consensus 392 PPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw 429 (539)
T PF04184_consen 392 PPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW 429 (539)
T ss_pred ChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence 12344565 7777776666655444455554444333
No 217
>KOG1585|consensus
Probab=98.02 E-value=0.0014 Score=60.42 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT------IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 430 (677)
...+...+.+|...+++++|..++.++.+-..++.. .+-..+.+......+.++..+|+++..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence 456677777888888888888888888765443322 233444555556666666666666643
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHH
Q psy16607 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAI 506 (677)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~ 506 (677)
.|...|.++.|-..++++-+. .+.-++++|+++|++++.+-..+ ...+.+-..+.++.
T Consensus 100 ---lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 344444444444444443322 23345555666666555443322 11223334444444
Q ss_pred HhhhcccccCCCHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh--hccchHHHHHH
Q psy16607 507 LNALSTSVYNDQPEVALLFYRRLL------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYN 578 (677)
Q Consensus 507 l~~l~~~~~~~~~~~A~~~~~~al------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~p~~~~~~~~ 578 (677)
+..++.+|-..+.+-. ...+.....+.....++....+|..|..+++...++. ..+++..+..+
T Consensus 162 --------rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 162 --------RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred --------hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 5566666655554433 1223333445555566666778999999988866532 33566677777
Q ss_pred HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
|-..| ..|+.++....+.
T Consensus 234 LL~ay--------------------d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAY--------------------DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHh--------------------ccCCHHHHHHHHc
Confidence 77766 7888887766554
No 218
>KOG2300|consensus
Probab=98.00 E-value=0.025 Score=57.64 Aligned_cols=321 Identities=8% Similarity=0.017 Sum_probs=164.2
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHccCC----CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcC---CCc----HHHH
Q psy16607 329 QLGKCYFSLG--LIREAQQQFNSALNQFT----DIEAFIRMIRVYI-RLDQPIRAIDIGRNALDCY---PNE----VTIM 394 (677)
Q Consensus 329 ~la~~~~~~g--~~~~A~~~~~~al~~~p----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~ 394 (677)
.+|..+...| +...++++++..+...+ .......+|.+++ ..++++.|...++++..+. |.. .++.
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 3444455555 55566666666655444 3344555555443 3456666666666665432 221 2345
Q ss_pred HHHHHHHHHcC-ChhHHHHHHHHHHHhCcCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH----HHHHH-
Q psy16607 395 TEMARIFEGLN-NMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA----ELFNN- 464 (677)
Q Consensus 395 ~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~- 464 (677)
..++.+|.... .+..+...+++++++....+ ...+.++.++.-..++..|++.+.-.......-. ...+.
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHH
Confidence 56666666655 56666677777776655443 3344566666666677766666332211111101 11111
Q ss_pred -HHHHHHHcCCHHH---HHHHHHHHHhhhccc----chHH-HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH---HH-
Q psy16607 465 -LALCCFYSQQYDM---VVTCFERALSLALNE----NAAD-VWYNISHVAILNALSTSVYNDQPEVALLFYRRL---LQ- 531 (677)
Q Consensus 465 -la~~~~~~g~~~~---A~~~~~~al~~~p~~----~~~~-~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a---l~- 531 (677)
.+.++....+..+ +.....+.++....+ +... .+..+..+| |+..|+...+...+++. +.
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~y-------y~~~gq~rt~k~~lkQLQ~siqt 244 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSY-------YLLPGQVRTVKPALKQLQDSIQT 244 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHHHHHHhc
Confidence 2233333333333 333333333322222 1111 122222222 24567766555555433 31
Q ss_pred cCCC------------cHH--HH---------HHHH--HHHHhccCHHHHHHHHHHHHHHhhc----cchHHH-------
Q psy16607 532 MGLY------------NAE--LF---------NNLA--LCCFYSQQYDMVVTCFERALSLALN----ENAADV------- 575 (677)
Q Consensus 532 ~~p~------------~~~--~~---------~~la--~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~------- 575 (677)
..+. .+. .| ..+. .--...|-+++|.++-++++..... +....+
T Consensus 245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~ 324 (629)
T KOG2300|consen 245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI 324 (629)
T ss_pred cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 1111 011 11 1111 1112456788888888888764211 112222
Q ss_pred -HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC---CC-------ChHHHHHHHHHHHHcCCHHH
Q psy16607 576 -WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID---SS-------HGLSQNNLAVLEAREGHIER 644 (677)
Q Consensus 576 -~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~ 644 (677)
+..+..|-. -.|++.+|++....+.+.. |. .+...+.+|......|.++.
T Consensus 325 ~LE~iv~c~l-------------------v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~en 385 (629)
T KOG2300|consen 325 LLEHIVMCRL-------------------VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYEN 385 (629)
T ss_pred HHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHH
Confidence 233444444 7899999988888777653 32 23456677777778888999
Q ss_pred HHHHHHHHHHhCCCC-h--HHHHHHHHHHHhcCC
Q psy16607 645 ASTYLQAAAASSPYL-Y--ETHYNQAVISNLVSV 675 (677)
Q Consensus 645 A~~~~~~al~~~p~~-~--~~~~~la~~~~~~G~ 675 (677)
|...|..|.++-... - -...|+|.+|...|+
T Consensus 386 Ae~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 386 AEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence 999999988865432 2 344567888877664
No 219
>KOG3616|consensus
Probab=98.00 E-value=0.002 Score=68.18 Aligned_cols=167 Identities=13% Similarity=0.021 Sum_probs=101.0
Q ss_pred HHhcccCHHHHHHHHHHH------Hhh----CcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy16607 298 LYHHENDVASAMDLAVES------TKA----CEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVY 367 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a------~~~----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 367 (677)
+|-+..++++|+++|++. +++ .|......-...|.-+...|+++.|+..|-++- .+.......
T Consensus 670 lfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------~~~kaieaa 742 (1636)
T KOG3616|consen 670 LFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------CLIKAIEAA 742 (1636)
T ss_pred HHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-------hHHHHHHHH
Confidence 344456777777777642 222 121111222234666777888888888887652 233344455
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 447 (677)
....++.+|+..++..-.... ....|-.++.-|...|+|+.|.++|.++- .......+|-+.|+++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHH
Confidence 566788888888876544332 23455677888899999999999887752 122334667788888888877
Q ss_pred HHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607 448 YRRLLQMGLYN-AELFNNLALCCFYSQQYDMVVTCF 482 (677)
Q Consensus 448 ~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 482 (677)
.++... |.. ...+...+.-+-+.|+|.+|.+.|
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 766532 322 234445555555556655554443
No 220
>KOG1258|consensus
Probab=98.00 E-value=0.032 Score=58.80 Aligned_cols=345 Identities=10% Similarity=-0.042 Sum_probs=223.1
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPI 374 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~ 374 (677)
-.+.|..+.+..+|++.+...|.+...|...++.+--..|+.+.-...|+++..... ....|-........++++.
T Consensus 89 E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 455688999999999999888877777777777777778888888889999888554 4455666666667778888
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHc------CChhHHHHHHHHHHH-------------------h--Cc--CCH
Q psy16607 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGL------NNMPMSVKYYKLILK-------------------R--DA--TCM 425 (677)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~-------------------~--~p--~~~ 425 (677)
.-..+|++.++.--.....++..=.-+.+. -..+++.+.-..... - .| ...
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 888888888765332222222111111111 112222221111110 0 00 001
Q ss_pred HHHHHHH-------HHHHhCCChHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 426 EAIACIG-------VNHFYNDQPEVALLFYRRLLQM-----GLY---NAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 426 ~~~~~la-------~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
.....+. .++.......+.+..++..++. .|. ....|..........|+++...-.|++++--..
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA 328 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA 328 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh
Confidence 1111111 1222222333444444444432 122 235677778888899999999999999988777
Q ss_pred ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q psy16607 491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569 (677)
Q Consensus 491 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 569 (677)
.. ...|...+.... ..|+.+-|-..+..+.+. .+..+.+...-+......|++..|...+++... ..
T Consensus 329 ~Y--~efWiky~~~m~--------~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--e~ 396 (577)
T KOG1258|consen 329 LY--DEFWIKYARWME--------SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES--EY 396 (577)
T ss_pred hh--HHHHHHHHHHHH--------HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh--hC
Confidence 66 889999998887 779999998888887765 466777788888888889999999999999998 45
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH---HHHHHHHccCCCC---hHHHHHHHHH-HHHcCCH
Q psy16607 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI---QCLHLALSIDSSH---GLSQNNLAVL-EAREGHI 642 (677)
Q Consensus 570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~---~~~~~al~~~p~~---~~~~~~la~~-~~~~g~~ 642 (677)
|+...+-........ +.|+.+.+. ..+.....-..+. ...+...+.. +.-.++.
T Consensus 397 pg~v~~~l~~~~~e~-------------------r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 397 PGLVEVVLRKINWER-------------------RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred CchhhhHHHHHhHHH-------------------HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 877766555544444 888888887 3333333221111 2233444443 3346889
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 643 ERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 643 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
+.|...+.++++..|++...+..+..+....+
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999999999888777766655443
No 221
>KOG0985|consensus
Probab=97.99 E-value=0.027 Score=62.30 Aligned_cols=152 Identities=9% Similarity=0.018 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (677)
..-..+++..+-..+-++++++.+-.+. +......+.....+ -+.....++.++.-..+.. .+|.+...
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~------~ia~iai~ 1060 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP------DIAEIAIE 1060 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch------hHHHHHhh
Confidence 3456677888888889999998875443 22222222222222 2333344444443222211 12233333
Q ss_pred cCChhHHHHHHHHH--------------------HHh--CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607 404 LNNMPMSVKYYKLI--------------------LKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 461 (677)
Q Consensus 404 ~g~~~~A~~~~~~a--------------------l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 461 (677)
.+-|++|...|++- .+. .-+.+..|..+|.+..+.|...+|++.|-++ +++..
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~ 1135 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSN 1135 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHH
Confidence 33344444443321 000 0134677888888888888888888777654 56777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
+.....+..+.|.|++-+.++.-+-+...+
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 777777788888888888877776655443
No 222
>KOG4507|consensus
Probab=97.95 E-value=0.00051 Score=70.80 Aligned_cols=105 Identities=20% Similarity=0.110 Sum_probs=90.2
Q ss_pred HHHhccCHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 546 CCFYSQQYDMVVTCFERALSLALNENAA-DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 546 ~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
.+...|+...|+.++..|+. ..|... ....+++.++. +.|-..+|-..+.+++.++..
T Consensus 616 ywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~-------------------~~~~~~da~~~l~q~l~~~~s 674 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLI-------------------HYGLHLDATKLLLQALAINSS 674 (886)
T ss_pred eeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHH-------------------HhhhhccHHHHHHHHHhhccc
Confidence 34457899999999999998 667554 44778898888 889999999999999999988
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 625 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
.+-.++.+|..+..+.+.+.|++.|++|++++|+++.....|-.+..
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88999999999999999999999999999999999987666655543
No 223
>KOG1550|consensus
Probab=97.92 E-value=0.011 Score=64.96 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcc----C--CCHHHHHHHHHHHHHcC-
Q psy16607 304 DVASAMDLAVESTKACEFRDWWWKVQLGKCYFSL-----GLIREAQQQFNSALNQ----F--TDIEAFIRMIRVYIRLD- 371 (677)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~----~--p~~~~~~~la~~~~~~g- 371 (677)
+...|..+++.+.+.. .......+|.++..- .+.+.|+.+|+.+... . ..+.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 3567888888887766 444446778877754 5788999999988762 1 14456677777777643
Q ss_pred ----ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC----CC
Q psy16607 372 ----QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN---NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----DQ 440 (677)
Q Consensus 372 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~ 440 (677)
+...|..+|.++.+.. ++++.+.+|.++..-. ++..|.++|..+... .+..+.+.++.+|..- .+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 5566777777776554 4566666777766554 456777777776543 3566777777766543 35
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q psy16607 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYS-QQYDMVVTCFERA 485 (677)
Q Consensus 441 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 485 (677)
...|..++.++...+ ++.+...++.++... ++++.+...+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 667777777777665 444444444444332 5555555444433
No 224
>KOG2610|consensus
Probab=97.89 E-value=0.0021 Score=62.08 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=136.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHH
Q psy16607 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN---AELFNNLALCCFY 471 (677)
Q Consensus 396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~ 471 (677)
.-+.+..-.|++.+|....++.++-.|.+.-++..--.+++.+|+...-...+++++.. +++- ..+.-.++-.+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34455667899999999999999999999999988889999999999999999999876 5554 4566677888899
Q ss_pred cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Q psy16607 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCC 547 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 547 (677)
.|-|++|.+.-++++++++.+ .-+...++.++. ..+++.++.+...+.-..-... ...|...+.++
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVle--------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFD--CWASHAKAHVLE--------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred hccchhHHHHHHhhccCCCcc--hHHHHHHHHHHH--------hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 999999999999999999998 778888888888 8899999999987754322211 12355678889
Q ss_pred HhccCHHHHHHHHHHHHHHhhccchH
Q psy16607 548 FYSQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 548 ~~~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
...+.|+.|++.|++-+-.....++.
T Consensus 258 iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hcccchhHHHHHHHHHHHHHhhccch
Confidence 99999999999999876533444444
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00024 Score=70.59 Aligned_cols=133 Identities=11% Similarity=-0.041 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG-LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 438 (677)
|..+.....+.+..+.|..+|.++++..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 44444444444455555555555554444445555555555444 33333355555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 439 DQPEVALLFYRRLLQMGLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++.+.|..+|++++..-+... .+|......-...|+.+....+.+++.+..|+.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 555555555555555433322 455555566666666666666666666655553
No 226
>KOG0985|consensus
Probab=97.88 E-value=0.0049 Score=67.77 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 417 (677)
+..|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++..+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344444444444444444444444332 23334444444444444444444444443
No 227
>KOG1550|consensus
Probab=97.87 E-value=0.0073 Score=66.17 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC
Q psy16607 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHIERASTYLQAAAASSPY 658 (677)
Q Consensus 606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~ 658 (677)
.+++.|...|.++.... +...+++|.++..- ..+..|..+|.++.+.+..
T Consensus 489 ~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 35677777777776654 66677777766542 1256777777777665544
No 228
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00043 Score=68.74 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADV 575 (677)
Q Consensus 497 ~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~p~~~~~ 575 (677)
+|..+..... +.+..+.|..+|.++++..+....+|...|.+.+. .++.+.|..+|+.+++ .-|.+...
T Consensus 3 v~i~~m~~~~--------r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMR--------RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHH
T ss_pred HHHHHHHHHH--------HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 4555555555 56679999999999997777788999999999777 5666669999999999 78999999
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 576 WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAA 652 (677)
Q Consensus 576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a 652 (677)
|......+. ..++.+.|...|++++..-+... .+|......-.+.|+.+....+.+++
T Consensus 73 ~~~Y~~~l~-------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 73 WLEYLDFLI-------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHHHHHHH-------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998888888 99999999999999999876654 57888888999999999999999999
Q ss_pred HHhCCCChHH
Q psy16607 653 AASSPYLYET 662 (677)
Q Consensus 653 l~~~p~~~~~ 662 (677)
.+..|++...
T Consensus 134 ~~~~~~~~~~ 143 (280)
T PF05843_consen 134 EELFPEDNSL 143 (280)
T ss_dssp HHHTTTS-HH
T ss_pred HHHhhhhhHH
Confidence 9999986543
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.82 E-value=0.05 Score=55.18 Aligned_cols=128 Identities=10% Similarity=-0.008 Sum_probs=84.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHH
Q psy16607 293 YLFEYLYHHENDVASAMDLAVESTKACEFRDWWWK----VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVY 367 (677)
Q Consensus 293 ~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~ 367 (677)
..-|+++..++++.+|..+|.++.+.......... ..+....+-+.+.+.-....-..-+..| ......-.+...
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA 89 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 34577788889999999999999876532222211 1111222334555555555555555555 566777788889
Q ss_pred HHcCChHHHHHHHHHHHHcCCCc----HH--H---------HHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNE----VT--I---------MTEMARIFEGLNNMPMSVKYYKLILKR 420 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~----~~--~---------~~~la~~~~~~g~~~~A~~~~~~al~~ 420 (677)
++.+++.+|++.+......-... .+ . -...+.++...|++.++...+.+.+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999887766542222 11 1 124577888999999999999888764
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.81 E-value=0.018 Score=61.64 Aligned_cols=166 Identities=11% Similarity=0.020 Sum_probs=119.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcccchHHH-----HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q psy16607 468 CCFYSQQYDMVVTCFERALSLALNENAADV-----WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN 542 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 542 (677)
+.--.|+-+.+++.+.++.+...-. .+-+ ++....... ....-.....+.|.+.+....+..|+..-..+.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~---~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSF---LGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHH---cCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3334589999999999987632111 0111 111111111 000003457789999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 543 LALCCFYSQQYDMVVTCFERALSLAL--NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 543 la~~~~~~g~~~~A~~~~~~al~~~~--~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
.|.++...|+.++|++.|++++.... ..-..-.++.++.++. .+++|++|..+|.+..+
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-------------------~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-------------------FQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-------------------HHchHHHHHHHHHHHHh
Confidence 99999999999999999999885211 1122345778888888 99999999999999998
Q ss_pred cCCCCh-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q psy16607 621 IDSSHG-LSQNNLAVLEAREGHI-------ERASTYLQAAAASS 656 (677)
Q Consensus 621 ~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 656 (677)
.+.-.. -..+..|.++...|+. ++|.++|.++-.+.
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 765433 3456678899999999 88888888876643
No 231
>KOG1585|consensus
Probab=97.80 E-value=0.0037 Score=57.79 Aligned_cols=192 Identities=10% Similarity=0.046 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCcHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY-----PNEVTIMT 395 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~ 395 (677)
..-+.++....+|++|...+.++.+-.. -..++-..+.+...+..+.++..+++++.... |+....-.
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal 114 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL 114 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence 3445556666777777777777764322 13445555566666677777777777776543 33333333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCHHHHH
Q psy16607 396 EMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQM------GLYNAELFN 463 (677)
Q Consensus 396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~ 463 (677)
..+--....-++++|+++|++++.+-... .+.+...+.++.+..++.+|-..+.+-... .+..-..+.
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence 44444556778889999999887764332 345566778888888888887777654322 223334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR 528 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~ 528 (677)
....+|....+|..|..+++...++..-. +...+..+|-..| ..|+.++...++.-
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay---------d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY---------DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh---------ccCCHHHHHHHHcC
Confidence 55566677779999999998876653211 1255566666665 67888877766543
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.71 E-value=0.02 Score=59.38 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCCC
Q psy16607 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-----------------IERASTYLQAAAASSPYL 659 (677)
Q Consensus 606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~ 659 (677)
+..++++..|.++.+.+|....+|+.+|..+...=+ ...|+..|-+++...++.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 889999999999999999999999999887765411 245888888999888873
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.71 E-value=3.1e-05 Score=48.82 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=29.2
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 646 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 646 (677)
+|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378889999999999999999999999999886
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.69 E-value=8.7e-05 Score=50.28 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHH
Q psy16607 395 TEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACI 431 (677)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 431 (677)
..+|.+|...|++++|++.|+++++.+|+++.++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3333344444444444444444444444333333333
No 235
>KOG4642|consensus
Probab=97.69 E-value=0.00011 Score=67.38 Aligned_cols=94 Identities=15% Similarity=0.029 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 440 (677)
..-|..|+.-.+|+.|+..|.+++.++|..+..+.+.+.++.+.++++.+...-+++++++|+.+..++.+|........
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34455566666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHc
Q psy16607 441 PEVALLFYRRLLQM 454 (677)
Q Consensus 441 ~~~A~~~~~~al~~ 454 (677)
+++|+..+.++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 77777777777543
No 236
>KOG3616|consensus
Probab=97.66 E-value=0.015 Score=61.90 Aligned_cols=253 Identities=12% Similarity=0.102 Sum_probs=134.0
Q ss_pred HHHHHHHcCChHHHHHHHHHH--HHcCCC----------cHHHHHHHHHHHHHcCChhHHHHHHHH------HHHhC---
Q psy16607 363 MIRVYIRLDQPIRAIDIGRNA--LDCYPN----------EVTIMTEMARIFEGLNNMPMSVKYYKL------ILKRD--- 421 (677)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~a--l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~--- 421 (677)
...+|.+.|.+.+|......- +..+.+ ..+.|-.-|.++.+..++++|+++|++ ++++.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh
Confidence 345677777777766543221 111110 122344556777777788888888765 33331
Q ss_pred -cCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH
Q psy16607 422 -ATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 499 (677)
Q Consensus 422 -p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 499 (677)
|.. ...--..|..+.+.|+++.|+..|-++-. ............++.+|+..++........ ...+-
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~---s~yy~ 769 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTA---SGYYG 769 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc---cccch
Confidence 221 12223457777788888888887765421 122223344556677777766655443322 22333
Q ss_pred HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH-HHHH
Q psy16607 500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD-VWYN 578 (677)
Q Consensus 500 ~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~-~~~~ 578 (677)
.++.-|. ..|+++.|.+.|.++ .....-...|.+.|++++|.++-++... |.... .|..
T Consensus 770 ~iadhya--------n~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~----~e~t~~~yia 829 (1636)
T KOG3616|consen 770 EIADHYA--------NKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG----PEATISLYIA 829 (1636)
T ss_pred HHHHHhc--------cchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC----chhHHHHHHH
Confidence 4455554 677777777777654 2233344566677777777666655532 33322 2222
Q ss_pred HHHHHHHhhcCCCCcccchhhh-HHhcCCCHHHHHHHHHHHHc----------cCCCC-hHHHHHHHHHHHHcCCHHHHH
Q psy16607 579 ISHVAIITECSPFSFSTHTSYL-FIQGISDTRLAIQCLHLALS----------IDSSH-GLSQNNLAVLEAREGHIERAS 646 (677)
Q Consensus 579 l~~~~~~~~~~p~~~~~~~~~~-~l~~~g~~~~A~~~~~~al~----------~~p~~-~~~~~~la~~~~~~g~~~~A~ 646 (677)
.+.-+.. ..+ ..... .|...|..+.|+..|++.-. ..|++ .+.+..+|.-+...|+...|.
T Consensus 830 kaedlde---hgk----f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 830 KAEDLDE---HGK----FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred hHHhHHh---hcc----hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence 2222210 000 00000 22244555555555554311 12322 356778888888889988888
Q ss_pred HHHHHHH
Q psy16607 647 TYLQAAA 653 (677)
Q Consensus 647 ~~~~~al 653 (677)
..|-++-
T Consensus 903 ~~flea~ 909 (1636)
T KOG3616|consen 903 EHFLEAG 909 (1636)
T ss_pred HHHHhhh
Confidence 8776653
No 237
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.65 E-value=0.17 Score=56.49 Aligned_cols=294 Identities=16% Similarity=0.090 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHccC---C--CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCC--cHH----HHHHHHHHHHHcCCh
Q psy16607 340 IREAQQQFNSALNQF---T--DIEAFIRMIRVYI-RLDQPIRAIDIGRNALDCYPN--EVT----IMTEMARIFEGLNNM 407 (677)
Q Consensus 340 ~~~A~~~~~~al~~~---p--~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~g~~ 407 (677)
...|+++++-+++.. | ...+.+.+|.++. ...+++.|..++.+++.+... -.+ ..+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345777777777432 2 5667788888887 678888898888888766533 222 344667778777776
Q ss_pred hHHHHHHHHHHHhCcC----CHHHHHHH--HHHHHhCCChHHHHHHHHHHHHcC--CCCHHHH----HHHHHHHHHcCCH
Q psy16607 408 PMSVKYYKLILKRDAT----CMEAIACI--GVNHFYNDQPEVALLFYRRLLQMG--LYNAELF----NNLALCCFYSQQY 475 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~----~~la~~~~~~g~~ 475 (677)
. |....++.++.... .....+.+ ...+...+++..|++.++...... ..++.+. ...+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 88888888876544 11112222 222223378888999888887765 3444332 3345666677778
Q ss_pred HHHHHHHHHHHhhhc------cc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH---HHH---cCC---C---
Q psy16607 476 DMVVTCFERALSLAL------NE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR---LLQ---MGL---Y--- 535 (677)
Q Consensus 476 ~~A~~~~~~al~~~p------~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~---al~---~~p---~--- 535 (677)
+++++.+.++..... +. ....+|..+-.+.. .+..|++..+...+++ .++ ..+ .
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~------~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~ 269 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCC------SLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDE 269 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCC
Confidence 888888777743221 11 11334444433332 2356776665554443 331 111 0
Q ss_pred c------------------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc--------------
Q psy16607 536 N------------------------------AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-------------- 571 (677)
Q Consensus 536 ~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-------------- 571 (677)
+ .-+|..-|......+..++|.++++++++...+-.
T Consensus 270 d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~ 349 (608)
T PF10345_consen 270 DGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEA 349 (608)
T ss_pred CeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHH
Confidence 0 01233345566677777799999999887532111
Q ss_pred -hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC---CC------ChHHHHHHHHHHHHcCC
Q psy16607 572 -AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID---SS------HGLSQNNLAVLEAREGH 641 (677)
Q Consensus 572 -~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~ 641 (677)
....|...-.++. .....|...-.+++..|....+.+.... |. .+..++..|..+...|+
T Consensus 350 ~~~~~~~~~l~~~~----------~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~ 419 (608)
T PF10345_consen 350 SERIQWLRYLQCYL----------LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGD 419 (608)
T ss_pred HHhHHHHHHHHHHH----------HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCC
Confidence 0011222211111 0011224448899999999888777543 22 35678889999999999
Q ss_pred HHHHHHHHH
Q psy16607 642 IERASTYLQ 650 (677)
Q Consensus 642 ~~~A~~~~~ 650 (677)
.+.|...|.
T Consensus 420 l~~A~~~y~ 428 (608)
T PF10345_consen 420 LEAALYQYQ 428 (608)
T ss_pred HHHHHHHHh
Confidence 999999998
No 238
>KOG1914|consensus
Probab=97.65 E-value=0.11 Score=54.04 Aligned_cols=327 Identities=13% Similarity=0.036 Sum_probs=198.8
Q ss_pred hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHcc---CC-CHHHHHHHHHHHH---
Q psy16607 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQ----QFNSALNQ---FT-DIEAFIRMIRVYI--- 368 (677)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~----~~~~al~~---~p-~~~~~~~la~~~~--- 368 (677)
+..++|+....+|.+.+... .+...|...+-.+-...|+...+.. .|+-++.. ++ ...+|...+..+.
T Consensus 64 l~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve 142 (656)
T KOG1914|consen 64 LASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE 142 (656)
T ss_pred HHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc
Confidence 44689999999999999766 4455565666666666666555433 34434332 22 3344444433332
Q ss_pred ------HcCChHHHHHHHHHHHHcCCCcHHH-HH-------------HHHHHHHHcCChhHHHHHHHHHH----------
Q psy16607 369 ------RLDQPIRAIDIGRNALDCYPNEVTI-MT-------------EMARIFEGLNNMPMSVKYYKLIL---------- 418 (677)
Q Consensus 369 ------~~g~~~~A~~~~~~al~~~p~~~~~-~~-------------~la~~~~~~g~~~~A~~~~~~al---------- 418 (677)
...+.+.-...|++++..--.+.+- |. ..-.+-.....|..|...+++..
T Consensus 143 a~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~ 222 (656)
T KOG1914|consen 143 AVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNA 222 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccC
Confidence 2235666778888887654333221 11 00111112223333433333322
Q ss_pred --------------------------------------------------HhCcCCHHHHHHHHHHHHhCCC--------
Q psy16607 419 --------------------------------------------------KRDATCMEAIACIGVNHFYNDQ-------- 440 (677)
Q Consensus 419 --------------------------------------------------~~~p~~~~~~~~la~~~~~~g~-------- 440 (677)
..-+..++.|+..+..+...++
T Consensus 223 ~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~ 302 (656)
T KOG1914|consen 223 PAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDV 302 (656)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccc
Confidence 2222345666655554444444
Q ss_pred ------hHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhh
Q psy16607 441 ------PEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAILNAL 510 (677)
Q Consensus 441 ------~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l 510 (677)
.+++..+|++++... ..+...++.++..-...- +++..-..+.+.+.+...+ ..-+|.++-....
T Consensus 303 ~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~ir---- 377 (656)
T KOG1914|consen 303 PDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-LTLVYCQYMNFIR---- 377 (656)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-CceehhHHHHHHH----
Confidence 567778888877643 223334444444333222 3666667777777664443 1233444444443
Q ss_pred cccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607 511 STSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL-CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS 589 (677)
Q Consensus 511 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~ 589 (677)
+..-.+.|...|.++-+.......++..-|. -|...++.+-|...|+-.+. ..++.+..-......+.
T Consensus 378 ----R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~----- 446 (656)
T KOG1914|consen 378 ----RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLS----- 446 (656)
T ss_pred ----HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHH-----
Confidence 5566888889999888655444444444443 35678999999999999998 77888877666666666
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHcc--CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSI--DSS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
..++-..|...|++++.. .++ ..+.|...-..-..-|+....+++-++-....|
T Consensus 447 --------------~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 447 --------------HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred --------------HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999999999986 332 347788888888888999998888887777666
No 239
>KOG4642|consensus
Probab=97.65 E-value=0.0001 Score=67.49 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=84.7
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607 512 TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591 (677)
Q Consensus 512 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~ 591 (677)
.++...+|..|+.+|.+++.++|..+..|.+.+.|+.+.++++.......++++ +.|+.+..++.+|.+..
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l------- 89 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLL------- 89 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHH-------
Confidence 355666788888888888888888888888888888888888888888888888 78888888888888887
Q ss_pred CcccchhhhHHhcCCCHHHHHHHHHHHHccCCC-----ChHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS-----HGLSQNNLAVLEAREGHIERASTY 648 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~ 648 (677)
....|++|+..+.++..+... -.+.+..|-.+-...=...++...
T Consensus 90 ------------~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 90 ------------QSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred ------------hhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 888888888888888654221 134555554444333334444443
No 240
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.63 E-value=0.18 Score=56.32 Aligned_cols=319 Identities=12% Similarity=0.096 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhhC---cCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcCCh
Q psy16607 305 VASAMDLAVESTKAC---EFRDWWWKVQLGKCYF-SLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLDQP 373 (677)
Q Consensus 305 ~~~A~~~~~~a~~~~---p~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~ 373 (677)
...|+.+++-+++.. |......++.+|.+++ ...++++|..++++++.+.. .....+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 446788888887432 2334456678999888 56999999999999987653 134456778888888877
Q ss_pred HHHHHHHHHHHHcCCC----cHHHHHHH--HHHHHHcCChhHHHHHHHHHHHhCc--CCHHH----HHHHHHHHHhCCCh
Q psy16607 374 IRAIDIGRNALDCYPN----EVTIMTEM--ARIFEGLNNMPMSVKYYKLILKRDA--TCMEA----IACIGVNHFYNDQP 441 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~----~~~la~~~~~~g~~ 441 (677)
. |...+++.++.... .....+.+ ...+...+++..|++.++....... .+..+ ....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999998876544 12222222 2333334799999999999887753 34332 23335666777888
Q ss_pred HHHHHHHHHHHHcCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---hc---c---c-ch--
Q psy16607 442 EVALLFYRRLLQMGL----------YNAELFNNLAL--CCFYSQQYDMVVTCFERA---LSL---AL---N---E-NA-- 494 (677)
Q Consensus 442 ~~A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~p---~---~-~~-- 494 (677)
+++++..+++..... ....+|..+-. ++...|+++.+...+++. +.. .+ . + .+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 888888888754221 11234444433 455677777776655443 211 11 0 0 00
Q ss_pred --------------HHHHH----HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-------CCc-------------
Q psy16607 495 --------------ADVWY----NISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-------LYN------------- 536 (677)
Q Consensus 495 --------------~~~~~----~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-------p~~------------- 536 (677)
.-.|. ....+|.+..+ .....+..++|.+++.++++.- +..
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l-~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGL-HNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHH-HHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 00010 11111111111 1124555557777777776321 110
Q ss_pred ------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc-c------chHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 537 ------AELFNNLALCCFYSQQYDMVVTCFERALSLALN-E------NAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 537 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-p------~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
..+.+..+.+..-.+++..|...++.+...... | -.+..++..|..+.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q------------------- 415 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ------------------- 415 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH-------------------
Confidence 113345677778889999999999988764321 2 23567888888887
Q ss_pred cCCCHHHHHHHHH--------HHHccCCCCh---HHHHHHHHHHHHcCCHHH
Q psy16607 604 GISDTRLAIQCLH--------LALSIDSSHG---LSQNNLAVLEAREGHIER 644 (677)
Q Consensus 604 ~~g~~~~A~~~~~--------~al~~~p~~~---~~~~~la~~~~~~g~~~~ 644 (677)
..|+.+.|+..|. .+....+.+. -+..++..++...+....
T Consensus 416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 9999999999998 3333333322 234567777776665444
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.62 E-value=0.0071 Score=61.23 Aligned_cols=181 Identities=10% Similarity=0.091 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCChhHHHHHHHHH-HHhCcCCHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC----YPNEVTIMTEMARIFEG---LNNMPMSVKYYKLI-LKRDATCMEA 427 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 427 (677)
+.++...+-..|....+|+.-+.+.+.+-.. .++.+.+....|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 5566666667777777777777777765554 34455556666666666 67777777777663 3334445666
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q psy16607 428 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507 (677)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l 507 (677)
+..+|.+|... + ++....+. ...++|+..|.++.+.+|+ ...-.+++.++.
T Consensus 220 ~gL~GRIyKD~---------~---~~s~~~d~-------------~~ldkAi~~Y~kgFe~~~~---~Y~GIN~AtLL~- 270 (374)
T PF13281_consen 220 LGLLGRIYKDL---------F---LESNFTDR-------------ESLDKAIEWYRKGFEIEPD---YYSGINAATLLM- 270 (374)
T ss_pred HHHHHHHHHHH---------H---HHcCccch-------------HHHHHHHHHHHHHHcCCcc---ccchHHHHHHHH-
Confidence 66666665432 0 11111111 1277888889999888866 333445555544
Q ss_pred hhhcccccCCCHHHH----HHHH---HHHH-Hc----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 508 NALSTSVYNDQPEVA----LLFY---RRLL-QM----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 508 ~~l~~~~~~~~~~~A----~~~~---~~al-~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
..|...+. .+.- ...+ +. .-.+...+-.++.+..-.|++++|+..++++.. ..|....
T Consensus 271 -------~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W~ 340 (374)
T PF13281_consen 271 -------LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAWE 340 (374)
T ss_pred -------HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcchh
Confidence 22322111 1111 1111 11 123344555677888889999999999999998 5555443
No 242
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.62 E-value=0.038 Score=57.29 Aligned_cols=305 Identities=13% Similarity=0.037 Sum_probs=155.2
Q ss_pred HHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHH---H
Q psy16607 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRV---Y 367 (677)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~---~ 367 (677)
.+..+.|+++. +.+.+...+.......+..+......|+++++....+++...-- ....+...-.. +
T Consensus 6 eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 6 EAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34566788888 33333333222333335566666688999999888888766321 11111111111 1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCChh--HHHHHHHHHHHh----CcCCHHHHHHHHHHHHh
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNE----VTIMTEMARIFEGLNNMP--MSVKYYKLILKR----DATCMEAIACIGVNHFY 437 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~~~~ 437 (677)
..+...+++..+....... +.. ...|...-... ..+++ +-+-.+++.+-. .......|...+.+..+
T Consensus 82 q~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred hHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 1222333333333221110 111 11122111111 12221 111122222222 33456678888888888
Q ss_pred CCChHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHhhhcc
Q psy16607 438 NDQPEVALLFYRRLLQMGL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALST 512 (677)
Q Consensus 438 ~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~l~~l~~ 512 (677)
.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+....... .......+..... ..
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 234 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL-ES--- 234 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc-cc---
Confidence 8888888888888777542 2467777788888888888888888887776333320 0000001110000 00
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS------QQYDMVVTCFERALSLALNENAADVWYNISHVAIIT 586 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~ 586 (677)
........... ........++..+|...... +..++++..|.+++. .+|....+|+.+|..+...
T Consensus 235 --~~~~~~~~~~~-----~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 235 --LEVISSTNLDK-----ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred --cccccccchhh-----hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHH
Confidence 00000000000 00011235667778777777 889999999999999 8899999999999877511
Q ss_pred hcC-CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 587 ECS-PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 587 ~~~-p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
-.. +........ -....-...|+..|-+++...+.
T Consensus 306 ~~~~~~~~~~~~~---~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 306 LESDPREKEESSQ---EDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHhhhhcccccch---hHHHHHHHHHHHHHHHHHhhCCC
Confidence 110 000000000 00111224588888888888776
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.60 E-value=0.00013 Score=46.24 Aligned_cols=34 Identities=26% Similarity=0.160 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.58 E-value=0.00017 Score=45.60 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
+++|+.+|.++...|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 245
>KOG0530|consensus
Probab=97.55 E-value=0.032 Score=52.36 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHH
Q psy16607 338 GLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKL 416 (677)
Q Consensus 338 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 416 (677)
.+|.++..+|+.++.. ......|+.+-..++..+|.+-.+|...-.++..++ +..+-++++.+
T Consensus 40 e~fr~~m~YfRAI~~~----------------~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~e 103 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAK----------------NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDE 103 (318)
T ss_pred hhHHHHHHHHHHHHhc----------------cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666776665433 345677888888899999999888877777666554 57778899999
Q ss_pred HHHhCcCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchH
Q psy16607 417 ILKRDATCMEAIACIGVNHFYNDQPE-VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 495 (677)
Q Consensus 417 al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 495 (677)
++..+|++..+|...-.+....|++. .-+++.+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+ -
T Consensus 104 I~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N--N 181 (318)
T KOG0530|consen 104 IIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN--N 181 (318)
T ss_pred HHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--c
Confidence 99999999999999988888888888 78889999999988899999999999999999999999999998877665 5
Q ss_pred HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 549 (677)
Q Consensus 496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 549 (677)
.+|...-.+.. ........-..+.-+.+..+.+...|++..+|+.|.-++..
T Consensus 182 SAWN~Ryfvi~--~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 182 SAWNQRYFVIT--NTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred chhheeeEEEE--eccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 55554433221 00000011223455677788889999999999998888775
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.53 E-value=8.9e-05 Score=46.76 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607 525 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 525 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
+|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 247
>KOG0376|consensus
Probab=97.51 E-value=0.00018 Score=73.08 Aligned_cols=100 Identities=12% Similarity=0.173 Sum_probs=54.3
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
.+..+.++.|+..|.++++++|+.+..+-+.+.++.+.+++..|+..+.++++ .+|....+|+..|.+..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m-------- 83 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVM-------- 83 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHH--------
Confidence 34445555555555555555555555555555555555555555555555555 44555555555555555
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 633 (677)
..+++.+|+..|+....+.|+++.+...+.
T Consensus 84 -----------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 84 -----------ALGEFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred -----------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 555555555555555555555554444433
No 248
>KOG0530|consensus
Probab=97.51 E-value=0.041 Score=51.68 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=148.5
Q ss_pred HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH-H
Q psy16607 298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI-R 375 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~-~ 375 (677)
++.+...-..|+++...++..+|.+-..|.+..-..-....+..+-+.++.+++..+| +-.+|...-.+....|++. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 3445678899999999999999988888866655555555678888999999999888 8888988888888889888 8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-CC-----ChHHHHHHHH
Q psy16607 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-ND-----QPEVALLFYR 449 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~ 449 (677)
-++..+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~ 211 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTK 211 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999988887777655333222 12 2344566778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q psy16607 450 RLLQMGLYNAELFNNLALCCFY-SQ--QYDMVVTCFERAL 486 (677)
Q Consensus 450 ~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 486 (677)
+.+...|++..+|+.+.-++.. .| .+.+........+
T Consensus 212 ~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 212 DKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 8899999999999999888775 44 2333444444433
No 249
>KOG0376|consensus
Probab=97.46 E-value=0.00021 Score=72.64 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=85.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh
Q psy16607 362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP 441 (677)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 441 (677)
..+...+..+.++.|+..|.++++++|++...+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34555666777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 442 EVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
.+|+..|+......|+++.+...+-.|-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 8888888888888888887766665543
No 250
>KOG0545|consensus
Probab=97.45 E-value=0.0014 Score=60.52 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHh------hccchH----------HHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLA------LNENAA----------DVWYNISHVAIITECSPFSFSTHTSYLF 601 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~p~~~----------~~~~~l~~~~~~~~~~p~~~~~~~~~~~ 601 (677)
.++..-|.-+++.|+|.+|...|..|+..- ..|..+ ..+.+...|+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L----------------- 241 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL----------------- 241 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-----------------
Confidence 344556777777888888887777776432 224333 34667888888
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
..|+|-++++.....+...|.+..+++..|.+....=+.++|.+.|.++++++|.-..+
T Consensus 242 --~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 242 --KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred --hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999999999999999999976543
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.41 E-value=0.16 Score=50.42 Aligned_cols=63 Identities=16% Similarity=-0.058 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607 427 AIACIGVNHFYNDQPE---VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 427 ~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 489 (677)
++..++.+|...+.++ +|....+.+-...|+.+..+...-.++.+.++.+++.+.+.+++...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 4445566665555433 34444444444556556555554455555666666666666666543
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.021 Score=54.86 Aligned_cols=151 Identities=16% Similarity=0.023 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-VTIMTEMARIFEGLN 405 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g 405 (677)
+..+......|++.+|...|..++...| +.++...++.++...|+.+.|...+...-...... ...+......+.+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 4566667777888888888888888777 77778888888888888877777766532222211 111111223333333
Q ss_pred ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHH
Q psy16607 406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDMVV 479 (677)
Q Consensus 406 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~ 479 (677)
...+.. .+++.+..+|++.++.+.++..+...|+.++|++.+-..++.+. .+..+...+-.++...|.-+.+.
T Consensus 218 ~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 218 ATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred cCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 333322 33455667788888888888888888888888888877777643 34455555555555555333333
No 253
>KOG4507|consensus
Probab=97.40 E-value=0.016 Score=60.16 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=88.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
..|+...|+.++..++...|.... ...+|+.++.+.|...+|-.++.+++. +....+-.++.+|..+.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~--~~~sepl~~~~~g~~~l--------- 687 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA--INSSEPLTFLSLGNAYL--------- 687 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh--hcccCchHHHhcchhHH---------
Confidence 579999999999999988886543 577899999999999999999999999 66777888999999998
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 637 (677)
.+.+.+.|++.|+.+++.+|++++.-..|-.+-+
T Consensus 688 ----------~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 688 ----------ALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred ----------HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999877666555443
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.36 E-value=0.044 Score=55.64 Aligned_cols=177 Identities=7% Similarity=-0.033 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----C-CHHHHHHHHHHHHH---cCChHHHHHHHHH-HHHcCCCcHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQF----T-DIEAFIRMIRVYIR---LDQPIRAIDIGRN-ALDCYPNEVTIMTEMA 398 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~----p-~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~~la 398 (677)
..+-.+|....+|+.-+++.+.+-... + ...+.+..|.++.+ .|+.++|+..+.. +....+.+++.+..+|
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 456667888899999999998877663 2 56777888888988 9999999999999 5556677899999999
Q ss_pred HHHHHc---------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 399 RIFEGL---------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 399 ~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
.+|... ...++|+..|.++.+.+|+. -.=.+++.++...|...+...-.++.. ..+....
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l~~ll 293 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VKLSSLL 293 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HHHHHHH
Confidence 998642 23566777777777776532 222344444444444222221111111 1111222
Q ss_pred HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
.+.|..+.- .+ .-....+..+.. -.|++++|++.++++++..|...
T Consensus 294 g~kg~~~~~-----------~d---YWd~ATl~Ea~v--------L~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 294 GRKGSLEKM-----------QD---YWDVATLLEASV--------LAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred Hhhcccccc-----------cc---HHHHHHHHHHHH--------HcCCHHHHHHHHHHHhhcCCcch
Confidence 222211111 11 112223333333 57999999999999999876654
No 255
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.36 E-value=0.00036 Score=48.72 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhh
Q psy16607 15 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMR 53 (677)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (677)
+|.|+.+++.|+|++|...|+.+|+++|.|.+|-.||..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 789999999999999999999999999999999988754
No 256
>KOG1258|consensus
Probab=97.36 E-value=0.28 Score=51.92 Aligned_cols=117 Identities=10% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHH-HHHHHHcCChHHHHHHHHH
Q psy16607 305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRM-IRVYIRLDQPIRAIDIGRN 382 (677)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l-a~~~~~~g~~~~A~~~~~~ 382 (677)
.+.+...|...+...|.-...| -..|..-.+.|..+.+.+.|++.+.--| ....|... +.+....|+...-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW-~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYW-KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3567778888888888777777 5889999999999999999999999888 66666544 3344456788888888888
Q ss_pred HHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607 383 ALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDA 422 (677)
Q Consensus 383 al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 422 (677)
+......+ ...|-........++++..-...|++.++.--
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~ 182 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL 182 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Confidence 88766543 33455555555677888888888888877533
No 257
>KOG0545|consensus
Probab=97.33 E-value=0.0048 Score=57.02 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILK------------------RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
++...|+-+++.|+|.+|...|+.++. ++......+.+++.|+...|+|-++++....++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555554432 12223456677888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
.|.+..+++..|.+....=+..+|...|.++++++|.-
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 88888888888888888888888888888888888764
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.015 Score=55.90 Aligned_cols=148 Identities=9% Similarity=-0.050 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-HHHHHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHF 436 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 436 (677)
+.-+..+.-....|++.+|...+..++...|++.++...++.+|...|+.+.|...+...-...... ...+......+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3445556667788999999999999999999999999999999999999999988887642222211 111111123333
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
+.....+. ..+++.+..+|++.++.+.++..+...|++++|.+.+-..+..+.......+...+-.++.
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 33333322 2345667789999999999999999999999999999988887655433444444444443
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.29 E-value=0.23 Score=49.40 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.+.+.|...++.++|++|+.+|+-++.
T Consensus 248 LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 248 LLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 345668889999999999999998774
No 260
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.28 E-value=0.00052 Score=47.96 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=35.2
Q ss_pred HHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhh
Q psy16607 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRS 159 (677)
Q Consensus 120 ~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 159 (677)
|++|+.+++.|+|++|...|+.+|+..|+++.+..++..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 6899999999999999999999999999999999887654
No 261
>KOG0890|consensus
Probab=97.25 E-value=0.35 Score=59.17 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHH---Hc----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607 519 PEVALLFYRRLL---QM----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591 (677)
Q Consensus 519 ~~~A~~~~~~al---~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~ 591 (677)
..+-+-.+++++ .. +....++|...|.+....|+++.|..++-.|.+ . .-+.+....+..++
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e--~--r~~~i~~E~AK~lW------- 1713 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE--S--RLPEIVLERAKLLW------- 1713 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--c--ccchHHHHHHHHHH-------
Confidence 444445555554 12 334578999999999999999999999998887 2 36778888888888
Q ss_pred CcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-----------------hHHHHHHHHHHHHcCCH--HHHHHHHHHH
Q psy16607 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-----------------GLSQNNLAVLEAREGHI--ERASTYLQAA 652 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~--~~A~~~~~~a 652 (677)
..|+-..|+..+++.++.+-.+ ..+...++......|++ ++-+.+|..+
T Consensus 1714 ------------~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1714 ------------QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred ------------hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999999999999999654221 12334444555555653 4567889999
Q ss_pred HHhCCCChHHHHHHHHHHH
Q psy16607 653 AASSPYLYETHYNQAVISN 671 (677)
Q Consensus 653 l~~~p~~~~~~~~la~~~~ 671 (677)
.++.|...+.+|.+|.-|.
T Consensus 1782 ~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred HHHcccccCceeeHHHHHH
Confidence 9999988888888885543
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.19 E-value=0.00073 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777766664
No 263
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.17 E-value=0.36 Score=49.28 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=43.8
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 652 (677)
Q Consensus 602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 652 (677)
++..|+|.++.-+-.=..++.| ++.++..+|.++....+|++|..++...
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4589999999988888888999 7899999999999999999999988763
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.16 E-value=0.0072 Score=64.62 Aligned_cols=115 Identities=12% Similarity=0.018 Sum_probs=73.4
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRA 376 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A 376 (677)
..+.+.|.+++....+..| +...|++..|+.+...|+.++|+..|++++.... ..-.++.++.++..+.+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP-NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4566777777777777774 4555557778888888888888888887765322 334556667777777777777
Q ss_pred HHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCh-------hHHHHHHHHH
Q psy16607 377 IDIGRNALDCYPNEVT-IMTEMARIFEGLNNM-------PMSVKYYKLI 417 (677)
Q Consensus 377 ~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~a 417 (677)
..++.++.+.+..... ..+..|.++...|+. ++|.++|.++
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 7777776665544333 334555566666666 4455554444
No 265
>KOG2041|consensus
Probab=97.15 E-value=0.061 Score=57.18 Aligned_cols=182 Identities=10% Similarity=-0.068 Sum_probs=115.8
Q ss_pred HHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH----------HHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607 350 ALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM----------TEMARIFEGLNNMPMSVKYYKLILK 419 (677)
Q Consensus 350 al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~ 419 (677)
.++.+|+++.|..++......-.++.|...|-+.-.. +. .... ...+.+-.--|++++|.+.|-.+-+
T Consensus 685 fiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 685 FIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 3455789999999999888877777777777664221 11 1111 2344555556889999888865532
Q ss_pred hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 497 (677)
Q Consensus 420 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 497 (677)
.+ . ...++.+.|++-...++++..-.-. .....++.++|..+..+..+++|.++|.+.-...
T Consensus 763 rD---L-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-------- 826 (1189)
T KOG2041|consen 763 RD---L-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-------- 826 (1189)
T ss_pred hh---h-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------
Confidence 21 1 1234556666666665554322111 1124689999999999999999999998764332
Q ss_pred HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
+...++. ...++++ ++.+...-|++...+-.+|..+...|.-++|.+.|-+.
T Consensus 827 --~~~ecly--------~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 827 --NQIECLY--------RLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred --hHHHHHH--------HHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 2233333 3333333 23344456788888888999999999999998887654
No 266
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.08 E-value=0.0013 Score=41.42 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.+++.+|.++...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.07 E-value=0.43 Score=48.55 Aligned_cols=175 Identities=11% Similarity=0.109 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY 526 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~ 526 (677)
.+++++...+-.+++|+.....+...++-+.|+...++++...|. ....++.++. ...+-+....+|
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~ye--------l~nd~e~v~~~f 356 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYE--------LVNDEEAVYGCF 356 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHh--------hcccHHHHhhhH
Confidence 456666666777788888888888888888888888888777665 2334444443 233333333344
Q ss_pred HHHHH-------c-----------CCC-cHH-----------HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHH
Q psy16607 527 RRLLQ-------M-----------GLY-NAE-----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 576 (677)
Q Consensus 527 ~~al~-------~-----------~p~-~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~ 576 (677)
+++.+ . ++. .++ +|+..-..-.+..-.+.|...|-++-+......+..+.
T Consensus 357 dk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~ 436 (660)
T COG5107 357 DKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIY 436 (660)
T ss_pred HHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeee
Confidence 43331 0 010 011 11212222223333455666666655422112222222
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 577 YNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 577 ~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
...-. +...|++.-|-..|+-.+...|+++..-...-..+...++-..|..+|++++.
T Consensus 437 ~A~~E--------------------~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 437 CAFIE--------------------YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHH--------------------HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 22222 22666777777777777776666655555555555666666666666665554
No 268
>KOG0890|consensus
Probab=97.07 E-value=0.35 Score=59.13 Aligned_cols=301 Identities=13% Similarity=0.095 Sum_probs=184.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC-C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQF-T---DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL 404 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~-p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (677)
.++.+-++.+.|..|+-++++-.... + ....+..+-.+|...++++.-.-..... ...| .+......+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHHHHhh
Confidence 57888899999999999999962211 1 3344455556999999998877666541 1222 244555667788
Q ss_pred CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHH
Q psy16607 405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA-LCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~ 483 (677)
|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++ .+-++.++++.-..+..
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999999999998877777777788888888888877776666555555555443 33466666665554432
Q ss_pred -------------HH-HhhhcccchHHHHHHHHHHH--HHhhhcccccCCCHHHHHHHHHHHH-------------HcCC
Q psy16607 484 -------------RA-LSLALNENAADVWYNISHVA--ILNALSTSVYNDQPEVALLFYRRLL-------------QMGL 534 (677)
Q Consensus 484 -------------~a-l~~~p~~~~~~~~~~l~~~~--~l~~l~~~~~~~~~~~A~~~~~~al-------------~~~p 534 (677)
+. +.....+ ....+..+.... ....+...-..|-+..+.+..-++. ...+
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD-~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~ 1621 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKD-EIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSY 1621 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccc-hhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 11 1111111 000000000000 0000000001112222222222211 1111
Q ss_pred -----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-h----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607 535 -----YNAELFNNLALCCFYSQQYDMVVTCFERALSLA-L----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG 604 (677)
Q Consensus 535 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~ 604 (677)
.+..-|.+....-....+..+-+-.+++++-.. . +..-.+.|...+.+.. .
T Consensus 1622 ~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-------------------~ 1682 (2382)
T KOG0890|consen 1622 DEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-------------------L 1682 (2382)
T ss_pred cccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-------------------h
Confidence 112344444433333334555555566654321 1 2344577888888887 8
Q ss_pred CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 605 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
.|+++.|..++-.|.+.. -+++....|..++..|+...|+..+++.++.+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999998876 57889999999999999999999999999764
No 269
>KOG0551|consensus
Probab=97.04 E-value=0.02 Score=55.65 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
.-+..-|.-|++.++|..|+.+|.+.+...-.+ .....|.+.+.+.. ..|+|..|+..+.+++..+|.+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~--------~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL--------YLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHhcCcchh
Confidence 344456777888888888888888888764433 23556667777766 78889999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.+++.-+.|+..+.++++|..+++..+.
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999988888876
No 270
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.02 E-value=0.0013 Score=41.53 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
.+|+.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999953
No 271
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.02 E-value=0.45 Score=47.77 Aligned_cols=192 Identities=16% Similarity=0.088 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~ 514 (677)
+++..+...+..+-.. .++.....++.+|... .+..+|...|+.+.+. .. +.+.+.+|.++.... +
T Consensus 55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g~--~~a~~~lg~~~~~G~-g--- 124 (292)
T COG0790 55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GL--AEALFNLGLMYANGR-G--- 124 (292)
T ss_pred ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--cc--HHHHHhHHHHHhcCC-C---
Confidence 3444444444444331 1223444444444432 2355555555533322 11 455556666654000 0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQ-------QYDMVVTCFERALSLALNENAADVWYNISHVAIIT 586 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~ 586 (677)
-..+..+|..+|.++.+..-.. ..+.+.++.++..-. +...|...|.++... .+..+...+|.+|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----~~~~a~~~lg~~y~~- 199 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----GNPDAQLLLGRMYEK- 199 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh----cCHHHHHHHHHHHHc-
Confidence 1225666666666666554333 234555666555531 224677888877762 367777788877740
Q ss_pred hcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q psy16607 587 ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---------------HIERASTYLQA 651 (677)
Q Consensus 587 ~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~ 651 (677)
-+.-..++.+|...|.++-+... ....+.++ ++...| +...|...+.+
T Consensus 200 --------------G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 200 --------------GLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred --------------CCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 01124478888888888888765 77778888 666655 78888888888
Q ss_pred HHHhCCCChHH
Q psy16607 652 AAASSPYLYET 662 (677)
Q Consensus 652 al~~~p~~~~~ 662 (677)
+....+.....
T Consensus 263 ~~~~~~~~~~~ 273 (292)
T COG0790 263 ACELGFDNACE 273 (292)
T ss_pred HHHcCChhHHH
Confidence 87776655433
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.016 Score=51.37 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
..++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444443
No 273
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.02 E-value=0.092 Score=52.80 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=124.5
Q ss_pred HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 549 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 549 (677)
...+.+..+...+.++-... + ......++.++.... ....+..+|+.+|+.+ ....++...+.+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~--~--~~a~~~l~~~y~~g~----gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~ 121 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG--D--AAALALLGQMYGAGK----GVSRDKTKAADWYRCA--AADGLAEALFNLGLMYAN 121 (292)
T ss_pred cccccHHHHHHHHHHhhhcC--C--hHHHHHHHHHHHhcc----CccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhc
Confidence 35577888888888876522 1 456777777775111 1345689999999954 445677889999999987
Q ss_pred ----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC
Q psy16607 550 ----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625 (677)
Q Consensus 550 ----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~ 625 (677)
..+..+|..+|+++...+ ++.-..+...++.+|..-. .......+...|...|.++-... +
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g-~~~a~~~~~~l~~~~~~g~------------~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLG-NVEAALAMYRLGLAYLSGL------------QALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHcCh------------hhhcccHHHHhHHHHHHHHHHhc--C
Confidence 458999999999999832 1111344778888775000 00001113357999999987765 7
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 626 GLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 626 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
+.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ +++..|
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 8899999988865 3489999999999999887 88899999 555544
No 274
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.01 E-value=0.85 Score=50.74 Aligned_cols=235 Identities=11% Similarity=-0.018 Sum_probs=147.8
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC--C-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT--C-------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-- 458 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 458 (677)
++......+.......++.+|.....++...-+. . .......|.+....|++++|+++.+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455667788888899999999988887665443 1 2333445778888999999999999999876654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHH--HHHHHHhhhcccccCCCHH--HHHHHHHHH
Q psy16607 459 ---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNI--SHVAILNALSTSVYNDQPE--VALLFYRRL 529 (677)
Q Consensus 459 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l--~~~~~l~~l~~~~~~~~~~--~A~~~~~~a 529 (677)
..+...+|.+..-.|++++|..+...+.+..... .+..+|..+ +.++. .+|+.. +....+...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~--------~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE--------AQGQVARAEQEKAFNLI 565 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHH
Confidence 3567788999999999999999999988775432 123333333 34444 667332 222222222
Q ss_pred ----HHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc--cc--hHH-HHHHHHHHHHHhhcCCCCcccchhhh
Q psy16607 530 ----LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN--EN--AAD-VWYNISHVAIITECSPFSFSTHTSYL 600 (677)
Q Consensus 530 ----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--p~--~~~-~~~~l~~~~~~~~~~p~~~~~~~~~~ 600 (677)
+...|.+.......+.++..--+++.+..-....++.... |. ... ..+.++.++.
T Consensus 566 ~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~---------------- 629 (894)
T COG2909 566 REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF---------------- 629 (894)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH----------------
Confidence 2334444444444444444444466666666666554321 22 222 2346777777
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCC-hHH------HHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 601 FIQGISDTRLAIQCLHLALSIDSSH-GLS------QNNLAVLEAREGHIERASTYLQA 651 (677)
Q Consensus 601 ~l~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~~~g~~~~A~~~~~~ 651 (677)
..|++++|...+.+...+..+. +.+ ..-........|+.++|.....+
T Consensus 630 ---~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 630 ---LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred ---hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999999998887653322 111 11122233457898888888777
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.021 Score=50.64 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNE----------------------VTIMTEMARIFEGLNNMPMSVKYYKLIL 418 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 418 (677)
...+......++...++..+++++.+.... ..++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344666677889999999999999876321 1245577788889999999999999999
Q ss_pred HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
..+|.+..++..+..+|...|+..+|++.|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998755
No 276
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.96 E-value=0.29 Score=56.25 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=75.2
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCC--CHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFR--DWWWKVQLGKCYFSL----G---LIREAQQQFNSALNQFTDIEAFIRMIRVYIR 369 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~la~~~~~ 369 (677)
++....|+.|+..|++.....|.. .....+..|..+..+ | .+++|+..|++.-....-+--|...|.+|.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR 564 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH
Confidence 444688999999999999988733 344557778776643 3 4778888888765544467778899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTI 393 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~ 393 (677)
+|++++-++++.-+++..|.++..
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 565 LGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999988764
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.05 Score=49.00 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHhhcCCCCcccch
Q psy16607 522 ALLFYRRLLQMGLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIITECSPFSFSTHT 597 (677)
Q Consensus 522 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~ 597 (677)
......+....++.+. .....++..+...+++++|+..++.++....+... .-+-.+++.+..
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~------------- 137 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL------------- 137 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-------------
Confidence 3333444444443332 23456788889999999999999999862222211 234567888887
Q ss_pred hhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 598 SYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 598 ~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
..|.+++|+..+....... -.+......|.++...|+.++|+..|+++++..++..
T Consensus 138 ------q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 138 ------QQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ------HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999998887654311 0123456689999999999999999999999875554
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.025 Score=50.84 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
-+...++..+...+++++|+..++.++....+. .-+-.+++.+....|++++|+..+...... .-........|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 344566777777777777777777766543321 123456777777777777777766653221 1122334456777
Q ss_pred HHhCCChHHHHHHHHHHHHcCCC
Q psy16607 435 HFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
+...|+-++|+..|.+++...+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 77777777777777777776643
No 279
>KOG0551|consensus
Probab=96.86 E-value=0.0066 Score=58.79 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
..+..-|.-|++.++|..|+..|.+++. .... +...|.+.+.+.. ..|+|..|+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~-------------------~l~NyRs~l~ 140 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQL-------------------YLGNYRSALN 140 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHH-------------------HHHHHHHHHH
Confidence 3445568888899999999999999987 3332 3456778888888 8999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
...+++.++|.+..+++.=+.|+..+.++++|..+.+..+.++-+.
T Consensus 141 Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 141 DCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999999999999888888888777665443
No 280
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.79 E-value=0.12 Score=52.54 Aligned_cols=147 Identities=13% Similarity=0.058 Sum_probs=88.0
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607 380 GRNALDCYPNEVTIMTEMARIFEGLNN------------MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 447 (677)
+++.++.+|.+.++|..+.......-. .+.-+..|++|++.+|++...+..+-....+..+.++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444555556666655555544333221 34455667777777777777766666666666666666777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhhccc----------------chHHHHHHHHHHHHHh
Q psy16607 448 YRRLLQMGLYNAELFNNLALCCFY---SQQYDMVVTCFERALSLALNE----------------NAADVWYNISHVAILN 508 (677)
Q Consensus 448 ~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~l~~~~~l~ 508 (677)
+++++..+|.+..+|...-..... .-.++.....|.+++..-... ....+...+.....
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~-- 165 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR-- 165 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH--
Confidence 777777777777766655444333 234556666666555432110 11333444455554
Q ss_pred hhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 509 ALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 509 ~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
..|..+.|+..++..++.+-
T Consensus 166 ------~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 ------QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred ------HCCchHHHHHHHHHHHHHHc
Confidence 78999999999999887664
No 281
>KOG1308|consensus
Probab=96.69 E-value=0.002 Score=62.63 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH
Q psy16607 364 IRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEV 443 (677)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 443 (677)
+.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|+..+..++.++|+...-+-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 44445567777777777777777777777777777777777777777777777777777766666666666677777777
Q ss_pred HHHHHHHHHHcC
Q psy16607 444 ALLFYRRLLQMG 455 (677)
Q Consensus 444 A~~~~~~al~~~ 455 (677)
|...+..+.+++
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 777777666654
No 282
>KOG3824|consensus
Probab=96.66 E-value=0.0064 Score=58.04 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=62.7
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
+.|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999887654
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.64 E-value=0.065 Score=54.42 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh---ccC
Q psy16607 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY---SQQ 552 (677)
Q Consensus 476 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~ 552 (677)
+.-+.+|++|++.+|++ ...+..+-.... +..+.++..+.+++++..+|++...|...-..... .-.
T Consensus 48 E~klsilerAL~~np~~--~~L~l~~l~~~~--------~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~ 117 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS--ERLLLGYLEEGE--------KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT 117 (321)
T ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc
Confidence 44566778888887776 655555555554 56677777788888888888888887765544433 234
Q ss_pred HHHHHHHHHHHHH
Q psy16607 553 YDMVVTCFERALS 565 (677)
Q Consensus 553 ~~~A~~~~~~al~ 565 (677)
++.....|.+++.
T Consensus 118 v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 118 VSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777776665
No 284
>KOG1308|consensus
Probab=96.54 E-value=0.0013 Score=63.92 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS 594 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~ 594 (677)
..|.++.|++.|..++.++|.....+...+.++.++++...|+..+..++. ++|+...-+-..+....
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~r---------- 193 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAER---------- 193 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHH----------
Confidence 445555666666666666665555555556666666666666666655555 55555544444444444
Q ss_pred cchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 595 THTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 595 ~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
.+|++++|...+..+.+++
T Consensus 194 ---------llg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 194 ---------LLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ---------HhhchHHHHHHHHHHHhcc
Confidence 5555666655555555554
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.52 E-value=0.0056 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
++++.+|.++.+.|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.45 E-value=0.0067 Score=38.81 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENA 572 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~ 572 (677)
++.+||.+|...|++++|+.+|++++.+..+|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 4788999999999999999999998875444443
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.40 E-value=0.0033 Score=40.25 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 628 SQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 628 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
++.+||.+|...|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966554
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.35 E-value=2.4 Score=47.35 Aligned_cols=229 Identities=9% Similarity=-0.021 Sum_probs=147.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT----------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-----VT 392 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 392 (677)
...+.......++.+|..+..++...-+ ........|.+....|++++|.+..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 5677888888999999988888766332 23445567788888999999999999999887765 34
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcC----CHH--HHHHHHHHHHhCCChH--HHHHHHHHH----HHcCCCCHH
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDAT----CME--AIACIGVNHFYNDQPE--VALLFYRRL----LQMGLYNAE 460 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~--~~~~la~~~~~~g~~~--~A~~~~~~a----l~~~~~~~~ 460 (677)
++..+|.+..-.|++++|..+..++.+.... ... +.+..+.++..+|+.. +....+... +...|.+..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 6778899999999999999999888877332 222 3344577888888432 222333222 223344434
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh----cccc-hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLA----LNEN-AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~-~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~ 535 (677)
.....+.++...-+++.+.......++.. |.+. ..-+.+.++.+.. ..|++++|...+.+.......
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~--------~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF--------LRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHhcC
Confidence 44444444444444677666666665543 2220 1112235666665 899999999999887754322
Q ss_pred c-----HH--HHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 536 N-----AE--LFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 536 ~-----~~--~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
. .. ++..........|+.++|.....+..
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 2 11 11222333456788888888877754
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.33 E-value=0.0091 Score=37.52 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777776663
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.18 E-value=0.2 Score=51.50 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC-----CcHH
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL-----YNAE 538 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p-----~~~~ 538 (677)
.....+.+.|-+..|.++.+-.+.++|...-..+.+.+-.... +.++++--++.++....... .-|.
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL--------rs~~y~~Li~~~~~~~~~~~~~~~~~lPn 179 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL--------RSRQYQWLIDFSESPLAKCYRNWLSLLPN 179 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH--------hcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence 3344455555555555555555555555211223333333333 45555555555554433111 1234
Q ss_pred HHHHHHHHHHhccCH---------------HHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQY---------------DMVVTCFERALS 565 (677)
Q Consensus 539 ~~~~la~~~~~~g~~---------------~~A~~~~~~al~ 565 (677)
..+..+.++...++- ++|...+.+|+.
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 556666777777666 788888888887
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.17 E-value=0.25 Score=50.75 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=97.3
Q ss_pred ccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------C------------CCcHH---HHHHHHHHH
Q psy16607 352 NQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--------------Y------------PNEVT---IMTEMARIF 401 (677)
Q Consensus 352 ~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~~~---~~~~la~~~ 401 (677)
+..| +++++..++.++..+|+...|.+.+++++-. + +.|.. +++.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 4455 6666666666666666666666666655421 1 22222 455667788
Q ss_pred HHcCChhHHHHHHHHHHHhCcC-CHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHcCC
Q psy16607 402 EGLNNMPMSVKYYKLILKRDAT-CMEA-IACIGVNHFYNDQPEVALLFYRRLLQMGL-----YNAELFNNLALCCFYSQQ 474 (677)
Q Consensus 402 ~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~ 474 (677)
.+.|-+..|+++.+-.+.++|. ++-. .+.+=....+.++++--++.++....... .-|...+..+.++...++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK 193 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence 8899999999999999999998 6544 34444455667888877887777655211 134567788888888888
Q ss_pred H---------------HHHHHHHHHHHhhhcc
Q psy16607 475 Y---------------DMVVTCFERALSLALN 491 (677)
Q Consensus 475 ~---------------~~A~~~~~~al~~~p~ 491 (677)
- +.|...+.+|+...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8 8999999999998765
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.07 E-value=0.1 Score=45.88 Aligned_cols=72 Identities=13% Similarity=-0.037 Sum_probs=67.7
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
..++.+++...+...--+.|..++.-..-|.++...|++.+|+.+|+.+.+-.|..+-+.-.++.|++.+|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 888999999999999999999999999999999999999999999999999999999888899999998886
No 293
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.02 E-value=2 Score=44.02 Aligned_cols=241 Identities=8% Similarity=0.021 Sum_probs=131.6
Q ss_pred HHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC
Q psy16607 346 QFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC 424 (677)
Q Consensus 346 ~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 424 (677)
.+++++.-.+ .+++|+.........++-+.|+...++++...|. ....++..|...++-+....+|+++...-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~-- 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK-- 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence 4555555555 5667777777677777777777777776666554 445556666666665555555655443100
Q ss_pred HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607 425 MEAIACIGVNHFY---NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501 (677)
Q Consensus 425 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 501 (677)
.-+..+..-.. -|+++...+++-+-.. .-.-+|+..-..-.+..-.+.|...|-++-+..-.. ..++...
T Consensus 365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~--h~vyi~~ 437 (660)
T COG5107 365 --RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG--HHVYIYC 437 (660)
T ss_pred --HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC--cceeeeH
Confidence 00000100000 1222222222111111 223344444444455555677777777765543111 2222222
Q ss_pred HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581 (677)
Q Consensus 502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~ 581 (677)
+.+- +...|++.-|...|+-.+...|+++......-..+...++-+.|..+|++++....+..-..+|-.+-.
T Consensus 438 A~~E-------~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~ 510 (660)
T COG5107 438 AFIE-------YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIE 510 (660)
T ss_pred HHHH-------HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHH
Confidence 2221 126788888888888888888888887777778888888888899999888763222222333433333
Q ss_pred HHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 582 ~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
.-. .-|+...+...=++..+..|.
T Consensus 511 YEs-------------------~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 511 YES-------------------MVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHH-------------------hhcchHHHHhHHHHHHHHcCc
Confidence 333 556666655555555555443
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.97 E-value=0.071 Score=54.31 Aligned_cols=123 Identities=16% Similarity=0.022 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
.|+...|-+-...++...|.++......+.+...+|.|+.+...+..+-..-.....+...+-......|++++|.....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666655444433334444455555666666666666666
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
-.+...-+++++...-+.....+|-++++...+++.+.++|..
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 6666655566655555555556666666776777666666543
No 295
>PRK10941 hypothetical protein; Provisional
Probab=95.93 E-value=0.088 Score=51.38 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=61.8
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..-...+.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998766544443
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.89 E-value=0.014 Score=36.28 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYP 388 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 388 (677)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44444444444444444444444444444
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.75 E-value=0.17 Score=44.45 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 439 (677)
+..+..+-...++.+++...+..+--+.|..+++-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34444444445555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred C
Q psy16607 440 Q 440 (677)
Q Consensus 440 ~ 440 (677)
+
T Consensus 93 D 93 (160)
T PF09613_consen 93 D 93 (160)
T ss_pred C
Confidence 4
No 298
>KOG1538|consensus
Probab=95.53 E-value=2.1 Score=45.80 Aligned_cols=89 Identities=9% Similarity=0.046 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
+....+.+...+..+.....+.-|.+.|.+.-.. ..+...+. ..+++.+|....++.-+.-
T Consensus 743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHv--------e~~~W~eAFalAe~hPe~~- 803 (1081)
T KOG1538|consen 743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHV--------ETQRWDEAFALAEKHPEFK- 803 (1081)
T ss_pred chhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhhee--------ecccchHhHhhhhhCcccc-
Confidence 3344455555566666666666666666554221 12222333 6677777766555433222
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
+..++-.|.-+....+|++|.+.|.+|-
T Consensus 804 --~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 --DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred --ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 2355566666666666666666665553
No 299
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.52 E-value=0.1 Score=42.47 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 410 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
++++|.++..+.|..+..++.+|.-+-....|++++.-.++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555544444445555555544444
No 300
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.48 E-value=3.6 Score=47.61 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRL----D---QPIRAIDIGRNALDCYPNEVTIMTEM 397 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 397 (677)
....++...+.|+.|+..|++.....| .-++.+..|...... | .+++|+..|++.. -.|.-+--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 345677788899999999999999888 457888888877653 2 4677777777643 345566778899
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCcCCHH
Q psy16607 398 ARIFEGLNNMPMSVKYYKLILKRDATCME 426 (677)
Q Consensus 398 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 426 (677)
|.+|..+|++++-+++|.-+++..|.++.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999887643
No 301
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.43 E-value=0.39 Score=39.46 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQQYDMVVTCFERALSL 566 (677)
Q Consensus 540 ~~~la~~~~~~g~~~~A~~~~~~al~~ 566 (677)
.++.+..+...|+.++|+..|+.+.++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 456778888888888888888887763
No 302
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.42 E-value=0.029 Score=34.09 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
.++..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999998863
No 303
>KOG3783|consensus
Probab=95.31 E-value=1.5 Score=46.01 Aligned_cols=236 Identities=11% Similarity=-0.042 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16607 306 ASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT---DIEAFIRMIRVYIRLDQPIRAIDIGRN 382 (677)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (677)
+...+.+.......|++ ..|.+..+..+...|+.+.|+..++..+...- ..-.++.++.++.-+.+|.+|-..+..
T Consensus 250 ~~~~~~Ll~~~~~~p~g-a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKG-ALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCC-ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44455555555666544 44557888888888888889999998888211 455678889999999999999999999
Q ss_pred HHHcCCCcHHHHHHHH-HHHHH--------cCChhHHHHHHHHH---HHhCcCCHHH---HHHHHHHHHhCCChHHHHHH
Q psy16607 383 ALDCYPNEVTIMTEMA-RIFEG--------LNNMPMSVKYYKLI---LKRDATCMEA---IACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 383 al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~ 447 (677)
..+........|..++ .++.. .|+-++|-.+++.. +...|++... ....+.-+...+.
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------- 401 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------- 401 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------
Confidence 9888776666666555 33321 23444444443332 2222322111 1111111111110
Q ss_pred HHHHHHcCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHH---hh-hcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607 448 YRRLLQMGLYNAE--LFNNLALCCFY--SQQYDMVVTCFERAL---SL-ALNENAADVWYNISHVAILNALSTSVYNDQP 519 (677)
Q Consensus 448 ~~~al~~~~~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~ 519 (677)
.++..+. .++.++.++.. ....++.. -++..+ .. ++++ ..-.+..+|.++. ..|+.
T Consensus 402 ------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd-~~lk~lL~g~~lR--------~Lg~~ 465 (546)
T KOG3783|consen 402 ------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDD-EGLKYLLKGVILR--------NLGDS 465 (546)
T ss_pred ------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchH-HHHHHHHHHHHHH--------HcCCH
Confidence 0111111 11222222111 11112222 111111 11 2221 2334456677776 78899
Q ss_pred HHHHHHHHHHHHcC------C-CcHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy16607 520 EVALLFYRRLLQMG------L-YNAELFNNLALCCFYSQQ-YDMVVTCFERALS 565 (677)
Q Consensus 520 ~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 565 (677)
..|..+|...++.. + -.|.+++.+|..+...+. ..++..++.+|-+
T Consensus 466 ~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 466 EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 99999998887321 1 136789999999999999 9999999999987
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.30 E-value=0.94 Score=37.30 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 629 QNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 629 ~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
.++.+..+...|+.++|+..|+.+-+
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 35667777778888888888877755
No 305
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.27 E-value=0.1 Score=41.53 Aligned_cols=65 Identities=18% Similarity=0.060 Sum_probs=52.6
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCC
Q psy16607 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLVSV 675 (677)
Q Consensus 611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~G~ 675 (677)
.+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567888999999999999999999999999999999999999998876 5677777777766664
No 306
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.56 Score=49.59 Aligned_cols=136 Identities=13% Similarity=-0.023 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNN--LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS 594 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~ 594 (677)
+...-++..+...+..++.++..+.. +...+...+....+...+...+. .+|++..+..+++....
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~L~~ale---------- 112 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLS--VNPENCPAVQNLAAALE---------- 112 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHh--cCcccchHHHHHHHHHH----------
Confidence 44444677777777788888876443 47777888888889989999998 89999999999999887
Q ss_pred cchhhhHHhcCCCHHHHHHHHHH-HHccCCCChHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 595 THTSYLFIQGISDTRLAIQCLHL-ALSIDSSHGLSQNNL------AVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 595 ~~~~~~~l~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
..|....+...+.. +....|++......+ +.....+|+..++....+++.++.|.++...-.+.
T Consensus 113 ---------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 113 ---------LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred ---------HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 66666665555554 888888887766555 88889999999999999999999999987776666
Q ss_pred HHHHhc
Q psy16607 668 VISNLV 673 (677)
Q Consensus 668 ~~~~~~ 673 (677)
......
T Consensus 184 ~~r~~~ 189 (620)
T COG3914 184 TARQEQ 189 (620)
T ss_pred HHHHHh
Confidence 554443
No 307
>KOG2396|consensus
Probab=95.19 E-value=4.8 Score=42.04 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC-hHHHHHHHHH
Q psy16607 305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ-PIRAIDIGRN 382 (677)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~ 382 (677)
...-..+|+.++...+.+...| ........+.+.+.+-...|.+++...| +++.|..-|.-.+..+. .+.|...+.+
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW-~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLW-LSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3456778888888875545555 4555555556668888899999999988 88888888887777766 8888999999
Q ss_pred HHHcCCCcHHHHHHHHH
Q psy16607 383 ALDCYPNEVTIMTEMAR 399 (677)
Q Consensus 383 al~~~p~~~~~~~~la~ 399 (677)
+++.+|+++..|...-.
T Consensus 166 gLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HhhcCCCChHHHHHHHH
Confidence 99999999888765443
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.11 E-value=0.23 Score=39.52 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA 422 (677)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 422 (677)
.+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34444444444444444455444444555555444444444443
No 309
>KOG1464|consensus
Probab=95.10 E-value=1.8 Score=41.19 Aligned_cols=189 Identities=12% Similarity=0.066 Sum_probs=119.0
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcC
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWW---KVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLD 371 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g 371 (677)
..++++|+..|+++++..+....|- +-.+..+.+++|+|++-...|.+++.--. .......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4689999999999999986554442 23466789999999999999998875211 2222222222222223
Q ss_pred ChHHHHHHHHHHHHc--CCCcHHHH----HHHHHHHHHcCChhHHHHHHHHHHHhCcC------------CHHHHHHHHH
Q psy16607 372 QPIRAIDIGRNALDC--YPNEVTIM----TEMARIFEGLNNMPMSVKYYKLILKRDAT------------CMEAIACIGV 433 (677)
Q Consensus 372 ~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~ 433 (677)
+.+--...|+..++. +..+...| ..+|.+|+..++|.+-.+.+++.-..... -.+.+..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333444433321 11222333 46899999999888877777665433211 1344555567
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLY--NAELFN----NLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
+|..+.+..+-..+|++++.+... +|.+.- .=|..+.+.|++++|-.-|-.|++...
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 777888888888889998876432 333322 235678888999999988888877543
No 310
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=0.88 Score=40.29 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=77.6
Q ss_pred ccCHHHHHHHHHHHHhhCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHcCChHH
Q psy16607 302 ENDVASAMDLAVESTKACEF-RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD-----IEAFIRMIRVYIRLDQPIR 375 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~ 375 (677)
.+..++|+..|....+..-. -.....+..+.+....|+-..|+..|.++-...+. .-+...-+.++...|-|++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 56777777777766654321 12233455666777777777777777777665441 2344555666666777776
Q ss_pred HHHHHHHHH-HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 376 AIDIGRNAL-DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 376 A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
.....+.+- ..+|-...+.-.||....+.|++.+|..+|.+... +...+....+.+.+
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 665555432 23344445556677777777777777777777654 33334444444443
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.95 E-value=5.3 Score=41.30 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=34.1
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
-+.+.++.+-.+..++.++..-+.-...+.+|.+|+.++++.-+.+.
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (831)
T PRK15180 761 HLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNG 807 (831)
T ss_pred hHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccC
Confidence 34455666667777776666556666677899999999999887763
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.91 E-value=0.049 Score=50.13 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=56.0
Q ss_pred hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
.+.++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|++..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 38899999999999999999999999999999999999999999999999999998753
No 313
>KOG2041|consensus
Probab=94.90 E-value=7 Score=42.43 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRN 382 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (677)
..++..+|..+..+..+++|.++|..
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666554
No 314
>KOG3824|consensus
Probab=94.86 E-value=0.097 Score=50.30 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16607 331 GKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA 398 (677)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 398 (677)
+.-..+.|+.++|..+|+.++...| +++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3334445555555555555555555 5555555555555555555555555555555555555554444
No 315
>KOG2581|consensus
Probab=94.79 E-value=2.4 Score=42.85 Aligned_cols=121 Identities=15% Similarity=0.029 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
..|+.+..++...|+...-...+..-+..+.-. ......+.+-..|. ..+.|+.|-.
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL-------------------~n~lydqa~~ 230 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYL-------------------HNKLYDQADK 230 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHh-------------------hhHHHHHHHH
Confidence 445666666666666555555555444422111 12233444555665 7888888888
Q ss_pred HHHHHHcc--CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHhcCCCC
Q psy16607 614 CLHLALSI--DSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET------HYNQAVISNLVSVIP 677 (677)
Q Consensus 614 ~~~~al~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~G~ip 677 (677)
...+..-- ..+ .+..++.+|.+..-+++|..|.++|-+|+...|++... ...+-.+...+|+||
T Consensus 231 lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiP 304 (493)
T KOG2581|consen 231 LVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIP 304 (493)
T ss_pred HhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCc
Confidence 77776421 112 23456788999999999999999999999999986432 233445567789998
No 316
>KOG3783|consensus
Probab=94.78 E-value=6.6 Score=41.53 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC--CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRL 451 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (677)
....+.+....+..|+++-.....+..+...|+.+.|+..++..+...-. ..-.++.++.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444555556677888888888888888888877777877777661111 1234556677777777888888888877
Q ss_pred HHcCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---hhcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607 452 LQMGLYNAELFNNLA-LCCFY--------SQQYDMVVTCFERALS---LALNENAADVWYNISHVAILNALSTSVYNDQP 519 (677)
Q Consensus 452 l~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~ 519 (677)
.+...=+.-.|..++ .|+.. .|+-++|..+++.... ..|.+.-.+.+ . .
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-~------------------~ 390 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-I------------------V 390 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-H------------------H
Confidence 766543333333333 33321 2233444333333221 11111000000 0 0
Q ss_pred HHHHHHHHHHHHcCC---CcHHH--HHHHHHHHH--hccCHHHHHHHHHHHHHHh-h-ccchH-HHHHHHHHHHHHhhcC
Q psy16607 520 EVALLFYRRLLQMGL---YNAEL--FNNLALCCF--YSQQYDMVVTCFERALSLA-L-NENAA-DVWYNISHVAIITECS 589 (677)
Q Consensus 520 ~~A~~~~~~al~~~p---~~~~~--~~~la~~~~--~~g~~~~A~~~~~~al~~~-~-~p~~~-~~~~~l~~~~~~~~~~ 589 (677)
.++. +.....| ....+ ++.++..+- .....++.. -++...+.. . ++++. -.+..+|.++.
T Consensus 391 RKve----rf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR----- 460 (546)
T KOG3783|consen 391 RKVE----RFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILR----- 460 (546)
T ss_pred HHHH----HHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHH-----
Confidence 1111 1111111 11111 112221111 111222222 112222110 1 22222 23556677777
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHcc---CCC----ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSI---DSS----HGLSQNNLAVLEAREGH-IERASTYLQAAAASSPYL 659 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 659 (677)
.+|+...|..+|+.+++. ... .|.+++.+|.++..+|. ..++.+++.+|-+...++
T Consensus 461 --------------~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 461 --------------NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred --------------HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 999999999999988842 111 26789999999999998 999999999998877554
No 317
>PRK10941 hypothetical protein; Provisional
Probab=94.76 E-value=0.35 Score=47.26 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI 428 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 428 (677)
.++-.+|.+.++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34445556666666666666666666666666666666666666666666666666666666655443
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.68 E-value=0.41 Score=41.34 Aligned_cols=72 Identities=14% Similarity=-0.082 Sum_probs=64.9
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
..++.+++...+...--+.|+.++.-..-|.++...|++.+|+..|+...+-.+..+-..-.++.|++.+|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 688899999999888889999999999999999999999999999999988888888888888999998886
No 319
>KOG1464|consensus
Probab=94.57 E-value=4.4 Score=38.64 Aligned_cols=192 Identities=14% Similarity=0.085 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CcHH-HHHHHHHHHHHcC
Q psy16607 337 LGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP-----NEVT-IMTEMARIFEGLN 405 (677)
Q Consensus 337 ~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~-~~~~la~~~~~~g 405 (677)
....++|+..|+++++..+ ...++-.+..++++++++++-...|.+.+..-. +..+ ....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4578999999999999876 346788899999999999999999888764321 1111 1111111111222
Q ss_pred ChhHHHHHHHHHHHh--CcCCHHHH----HHHHHHHHhCCChHHHHHHHHHHHHcCC------------CCHHHHHHHHH
Q psy16607 406 NMPMSVKYYKLILKR--DATCMEAI----ACIGVNHFYNDQPEVALLFYRRLLQMGL------------YNAELFNNLAL 467 (677)
Q Consensus 406 ~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~------------~~~~~~~~la~ 467 (677)
+.+--.++|+..+.. +..+...| ..+|.+|+..+.|.+-.+++++.-.... .-.+++..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333344433322 12233333 4688899988888877777666543211 11245555567
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607 468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~ 532 (677)
+|....+-.+-...|++++.+...-..+. .+|.+.. |...-+++.|++++|-..|-++++.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl---ImGvIRE-CGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPL---IMGVIRE-CGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchH---HHhHHHH-cCCccccccchHHHHHhHHHHHHhc
Confidence 78888888888888888887643211121 2333321 2223345778888888877777754
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.55 E-value=1.6 Score=37.80 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 440 (677)
......-...++++++...+..+--+.|+.+++-..-|.++...|+|.+|+..|+...+..+..+-..-.++.|+..+|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33344444466666676666666666677766666667777777777777777776666555555555555666665555
Q ss_pred h
Q psy16607 441 P 441 (677)
Q Consensus 441 ~ 441 (677)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 3
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.35 E-value=0.81 Score=43.21 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAV 668 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 668 (677)
.+.+.+|.+..+.|++++|..+|.+++...-.+. ....++|.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 4566677777777777777777777776443222 24444443
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.35 E-value=7.9 Score=40.58 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=35.5
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 412 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
....+++.... +-.+++.++.+|... ..++-..++++.++.+-++...-..++..|.+ ++-..+..+|.+++.
T Consensus 87 h~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 87 HLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 33344443332 334455555555554 33444455555555554444444445544444 555555555555544
No 323
>KOG3364|consensus
Probab=94.32 E-value=0.77 Score=38.81 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHc-cCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607 325 WWKVQLGKCYFSLG---LIREAQQQFNSALN-QFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEM 397 (677)
Q Consensus 325 ~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (677)
...++++.++.+.. +..+.+.+++..++ ..| ..+..+.++..+++.++|+.++.+.+..++..|++..+....
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34477888887764 45677888888886 444 667888888888899999999999999988888887765443
No 324
>KOG4014|consensus
Probab=94.24 E-value=3.9 Score=36.64 Aligned_cols=185 Identities=11% Similarity=0.010 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 458 NAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 458 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
.|+....+|..+.- ..++++|...|+.-..-+. .+...+.+|..+.+...+ ..+++..|++.|..+-. .+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~---y~kSCyKyG~y~~~GKgG---~~~~l~~a~r~~~~aC~--~n~ 104 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS---YPKSCYKYGMYMLAGKGG---DDASLSKAIRPMKIACD--ANI 104 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---CcHHHHHhhhhhhcccCC---CccCHHHHHHHHHHHhc--cCC
Confidence 45555555555443 3456666666655433322 255556666555422221 34456667777666654 345
Q ss_pred HHHHHHHHHHHHhc-----c--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-----CCCCcccchhhhHHhc
Q psy16607 537 AELFNNLALCCFYS-----Q--QYDMVVTCFERALSLALNENAADVWYNISHVAIITEC-----SPFSFSTHTSYLFIQG 604 (677)
Q Consensus 537 ~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~-----~p~~~~~~~~~~~l~~ 604 (677)
+.+...+|.++..- + +.++|..++.++-. -++..+-++|...++.-.. .|.....-.......-
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd----l~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~ 180 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD----LEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL 180 (248)
T ss_pred HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc----CCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence 55666666665532 1 24667777777654 3445555555555542211 2211111111112335
Q ss_pred CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q psy16607 605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE----GHIERASTYLQAAAASS 656 (677)
Q Consensus 605 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 656 (677)
..+.+.|.++--++-++. ++.+..++...|..- ++.++|..+-.+|.++.
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 567889999988888774 567777777776542 46788888888877653
No 325
>KOG3364|consensus
Probab=94.02 E-value=0.94 Score=38.32 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607 537 AELFNNLALCCFYSQQ---YDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~ 612 (677)
....+++++++....+ ..+.+.+++..++. ..| ...+..+.++..+. +.++|++++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~y-------------------RlkeY~~s~ 91 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHY-------------------RLKEYSKSL 91 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHH-------------------HHhhHHHHH
Confidence 3455666666665443 34455566655541 222 23344555555554 666666666
Q ss_pred HHHHHHHccCCCChHHHH
Q psy16607 613 QCLHLALSIDSSHGLSQN 630 (677)
Q Consensus 613 ~~~~~al~~~p~~~~~~~ 630 (677)
.+.+..++..|++..+..
T Consensus 92 ~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 92 RYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHhhCCCcHHHHH
Confidence 666666666666555443
No 326
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.96 E-value=0.48 Score=38.72 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=67.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607 363 MIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439 (677)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 439 (677)
++.-++..|++-+|+++.+..+...+++.. .+...|.++.. .+...+..+....+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHHH--------
Confidence 355667777777777777777777665553 33344444432 2223322233333333
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607 440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488 (677)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 488 (677)
.+++.|.++..+.|..+..++.+|.-+-....|++++.-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3678899999999999888888888777777777777777777654
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.93 E-value=1.4 Score=40.16 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EVTIMTEMARIFEGLNNMPMSVKYYKLIL 418 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 418 (677)
.++..+|..|.+.|+.++|++.|.++.+.... ..+.+..+..+....+++.....+..++-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555555555555555443321 12344445555555555555555555443
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.90 E-value=13 Score=41.58 Aligned_cols=248 Identities=13% Similarity=-0.003 Sum_probs=122.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607 369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448 (677)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 448 (677)
+.+++..-+.++ ...|.+.......+......|+.++|....+++.......+.....+-..+...|........-
T Consensus 111 ~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~ 186 (644)
T PRK11619 111 RREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLE 186 (644)
T ss_pred HccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHH
Confidence 455666555532 2236777777777788888888887877777766555444444444444444334333222111
Q ss_pred HHHHHcCCCCHHHHHHHHHHH-----------H-HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607 449 RRLLQMGLYNAELFNNLALCC-----------F-YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516 (677)
Q Consensus 449 ~~al~~~~~~~~~~~~la~~~-----------~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~ 516 (677)
+--+.+...+......+...+ . -..+...+...+. ..+.+........++.... ..
T Consensus 187 R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~l~Rl--------ar 254 (644)
T PRK11619 187 RIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR----TTGPTDFTRQMAAVAFASV--------AR 254 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccCCChhhHHHHHHHHHHH--------HH
Confidence 111111111221111111111 0 0111111111111 1111100111112222222 44
Q ss_pred CCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607 517 DQPEVALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
.+.+.|...+.+......-+. .++..+|.-....+...+|..++..+... ..+...+........
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al-------- 323 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMAL-------- 323 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHH--------
Confidence 666777777776544433222 23334444444433356677777665531 112222222222222
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
..++++.....+...-..........+.+|..+...|+.++|...|+++..
T Consensus 324 -----------~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 -----------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred -----------HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 788888887777775443445667889999998889999999999999854
No 329
>KOG0128|consensus
Probab=93.89 E-value=13 Score=41.42 Aligned_cols=328 Identities=12% Similarity=0.080 Sum_probs=178.5
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHccCCCHHHHHHHHHHH-------HH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLG-KCYFS-LGLIREAQQQFNSALNQFTDIEAFIRMIRVY-------IR 369 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~-------~~ 369 (677)
+...|++++-...-.++.+..|.+.+.|+..+- ..++. .+...++...|++++.....+..|...+... ..
T Consensus 123 lrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~ 202 (881)
T KOG0128|consen 123 LRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKK 202 (881)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHHHHhccccccc
Confidence 455688888777777777777766666654333 22222 3778889999999998665444444444433 44
Q ss_pred cCChHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHH----HHHHHH--H-HH
Q psy16607 370 LDQPIRAIDIGRNALDCYPN-------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCME----AIACIG--V-NH 435 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la--~-~~ 435 (677)
.++++.-...|.+++..-.. ....+...-..|...-..++-+.++.+.+... -+.. .|.... . ..
T Consensus 203 ~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~ 281 (881)
T KOG0128|consen 203 SEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYD 281 (881)
T ss_pred cccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHH
Confidence 46677888888888764321 23345555556666655677777777776654 2211 111111 1 11
Q ss_pred HhCCChHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Q psy16607 436 FYNDQPEVALLF-------YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508 (677)
Q Consensus 436 ~~~g~~~~A~~~-------~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~ 508 (677)
....+++.|..- +++.++..+.....|..+-......|++-.-...+++++...+.+ ...|...+...-
T Consensus 282 ~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~--~~~wi~y~~~~d-- 357 (881)
T KOG0128|consen 282 VETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD--RALWIGYGVYLD-- 357 (881)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc--HHHHhhhhhhcc--
Confidence 222344444443 333444444445566677777777888877777888887766665 666666665432
Q ss_pred hhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-------------------------------------
Q psy16607 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ------------------------------------- 551 (677)
Q Consensus 509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------------------------- 551 (677)
..++-.+.+...+-+++...|.....|...-..+.+.+
T Consensus 358 -----~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s 432 (881)
T KOG0128|consen 358 -----TELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDS 432 (881)
T ss_pred -----cccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 12233333333344444433333332222111111111
Q ss_pred -CH-------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 552 -QY-------DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 552 -~~-------~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
++ ..|...|..-.....++ ....+...+.+. +..+++.+.+...++..+...-
T Consensus 433 ~~~s~lr~~F~~A~~eLt~~~~~~~Dt-~~~~~q~wA~~E------------------~sl~~nmd~~R~iWn~imty~~ 493 (881)
T KOG0128|consen 433 QDYSSLRAAFNHAWEELTELYGDQLDT-RTEVLQLWAQVE------------------ASLLKNMDKAREIWNFIMTYGG 493 (881)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHH------------------HHHhhchhhhhHhhhccccCCc
Confidence 11 22222222222100000 011111222221 1256778888888887776655
Q ss_pred CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 624 SHGL-SQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 624 ~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
.+.. .|.....+-...|+...++.++++|+..
T Consensus 494 ~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 494 GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 5444 6777777778889999999888888764
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.56 E-value=0.11 Score=31.28 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
++..+|.++...|++++|+..++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665543
No 331
>KOG1538|consensus
Probab=93.53 E-value=1.2 Score=47.48 Aligned_cols=84 Identities=8% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 470 (677)
.+.+..++..+.....+.-|.+.|.+.-.. ..+..++...+++.+|..+.++.-+. -+.+++-.|+-+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhh
Confidence 334444444444444444454444443111 12334455556666666555543222 2345566666666
Q ss_pred HcCCHHHHHHHHHHH
Q psy16607 471 YSQQYDMVVTCFERA 485 (677)
Q Consensus 471 ~~g~~~~A~~~~~~a 485 (677)
+..++++|.+.|.++
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666666554
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.49 E-value=1.1 Score=41.02 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
.++..+|..|.+.|++++|++.|.++......+.+ .+.+..+..+.. ..+++.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-------------------~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-------------------FFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-------------------HhCCHHHHHHHHH
Confidence 56788999999999999999999998874434433 466777777777 8999999999998
Q ss_pred HHHccCCC--ChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 617 LALSIDSS--HGLS----QNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 617 ~al~~~p~--~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
++-..... +.+. ...-|..+...++|.+|...|-.+..-.
T Consensus 98 ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 98 KAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 88765332 2222 2334666778899999999987776544
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=3.7 Score=43.70 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=82.7
Q ss_pred HHHHHHHHHccCC-CHHHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHH-HH
Q psy16607 343 AQQQFNSALNQFT-DIEAFIR--MIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKL-IL 418 (677)
Q Consensus 343 A~~~~~~al~~~p-~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 418 (677)
++..+...+..++ +...+.. +...+...+....+.-.....+..+|++..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555555555555 4444322 455666667777777777778888888888888887777777666666555544 66
Q ss_pred HhCcCCHHHHHHH------HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607 419 KRDATCMEAIACI------GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468 (677)
Q Consensus 419 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 468 (677)
...|.+......+ +......|+..++.....++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7777776655544 6666667777777777777777777776555444444
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=5.5 Score=35.49 Aligned_cols=121 Identities=10% Similarity=0.012 Sum_probs=81.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchH--HHHHHHHHHHHHhhhcc
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA--DVWYNISHVAILNALST 512 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~l~~~~~l~~l~~ 512 (677)
..+..++|+.-|..+-+..-.. .-+....+.+....|+...|+..|..+-.-.+.+... -+...-+..++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv------ 143 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV------ 143 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh------
Confidence 4566777777777766654332 3455667788888888888888888876665553111 22233334444
Q ss_pred cccCCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 513 SVYNDQPEVALLFYRRLL-QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..|-|++-....+.+- ..+|....+.-.||..-++.|++.+|.+.|.+...
T Consensus 144 --D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 --DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred --ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6777777666555443 44566667777889999999999999999998876
No 335
>KOG2422|consensus
Probab=93.25 E-value=8.7 Score=40.90 Aligned_cols=94 Identities=13% Similarity=0.018 Sum_probs=54.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HhhhcccchHHHHHHHH
Q psy16607 430 CIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCC-FYSQQYDMVVTCFERA-----LSLALNENAADVWYNIS 502 (677)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~~~l~ 502 (677)
.....+.+.|-+..|.++++-.++++|. +|.....+..+| .+..+|.--+..++.. +..-|+ ...-..++
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS~AlA 423 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYSLALA 423 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHHHHHH
Confidence 3344556678888888888888888887 666555555444 3455666666665544 222233 12222333
Q ss_pred HHHHHhhhcccccCC---CHHHHHHHHHHHHHcCC
Q psy16607 503 HVAILNALSTSVYND---QPEVALLFYRRLLQMGL 534 (677)
Q Consensus 503 ~~~~l~~l~~~~~~~---~~~~A~~~~~~al~~~p 534 (677)
..+. ... ..+.|...+.+|+...|
T Consensus 424 ~f~l--------~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 424 RFFL--------RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHH--------hcCChhhHHHHHHHHHHHHHhCc
Confidence 3333 222 25667777777777666
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.24 E-value=0.84 Score=43.10 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKR 420 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 420 (677)
.+.+.+|.+..+.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45556666666666666666666666554
No 337
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.04 E-value=9.6 Score=37.31 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Q psy16607 454 MGLYNAELFNNLAL-CCFYSQQYDMVVTCFERALSL 488 (677)
Q Consensus 454 ~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 488 (677)
..|.....+...+. .|...++...|...+....+.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34555566655554 456679999888877766655
No 338
>KOG1463|consensus
Probab=92.96 E-value=11 Score=37.55 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----cccchHH
Q psy16607 428 IACIGVNHFYNDQPEVALLFYRRLLQM----G--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAAD 496 (677)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 496 (677)
-..+..+|...++|.+|+......+.. + +.-.+++..-..+|....+..+|...+..|-... |......
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 356788999999999999887776642 2 1224566667788888888888888887664432 1110011
Q ss_pred HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC---CcHHH---HHHHHHHHHhccCHHHHHHHHH--HHHHHhh
Q psy16607 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL---YNAEL---FNNLALCCFYSQQYDMVVTCFE--RALSLAL 568 (677)
Q Consensus 497 ~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p---~~~~~---~~~la~~~~~~g~~~~A~~~~~--~al~~~~ 568 (677)
.-..-|..+ ....+|.-|..+|-++++-.. ++..+ +..+-.|-...+..++--..+. .+++ .
T Consensus 211 lDLqSGIlh--------a~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y 280 (411)
T KOG1463|consen 211 LDLQSGILH--------AAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y 280 (411)
T ss_pred HHHhcccee--------ecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c
Confidence 111122222 256889999999999885432 22233 3334444555666665444443 3333 4
Q ss_pred ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 569 ~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
...+.++...++..+. -..+.+|+.|+..|+.-+..+|
T Consensus 281 ~g~~i~AmkavAeA~~-----------------nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 281 AGRDIDAMKAVAEAFG-----------------NRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred cCcchHHHHHHHHHhc-----------------CCcHHHHHHHHHHhHHHHhcCh
Confidence 4555566666666553 1145678888888888777554
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.87 E-value=0.24 Score=32.46 Aligned_cols=30 Identities=30% Similarity=0.247 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 626 GLSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
..++.++|.+|...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999985
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.42 E-value=3.9 Score=43.38 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
++..|..||......|+++-|..+|+++-
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 44455555555555555555555555443
No 341
>KOG0128|consensus
Probab=92.34 E-value=22 Score=39.74 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=39.3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q psy16607 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 583 (677)
Q Consensus 526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~ 583 (677)
+.+.+...+.....|..+..-....|..-.-...+++++. ..+.+...|...+...
T Consensus 301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~--E~~~~~~~wi~y~~~~ 356 (881)
T KOG0128|consen 301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA--EMVLDRALWIGYGVYL 356 (881)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH--hccccHHHHhhhhhhc
Confidence 3344445555556677777777888888888888888887 6677777787777654
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.32 E-value=3.6 Score=43.61 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=95.3
Q ss_pred cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
.+++++++........ ..|.-.......++..+.++|..+.|+...+ +++..+.+ ..+.|+++.|.+..
T Consensus 273 ~~~d~~~v~~~i~~~~-ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~~rFeL---Al~lg~L~~A~~~a 341 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASN-LLPNIPKDQGQSIARFLEKKGYPELALQFVT-------DPDHRFEL---ALQLGNLDIALEIA 341 (443)
T ss_dssp HTT-HHH-----HHHH-TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHH---HHHCT-HHHHHHHC
T ss_pred HcCChhhhhhhhhhhh-hcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChHHHhHH---HHhcCCHHHHHHHH
Confidence 3689999877775221 1121123334678888889999888876544 34444444 46789999997764
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH
Q psy16607 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 460 (677)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 460 (677)
++ .++...|..+|......|+++-|.++|+++-. +..+..+|...|+.+.-.++.+.+.....
T Consensus 342 ~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---- 404 (443)
T PF04053_consen 342 KE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD---- 404 (443)
T ss_dssp CC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred Hh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 43 34778999999999999999999999998632 34566777788887666666655554432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
++..-.+++..|+.++.++.+.++
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 222334556667777777776554
No 343
>KOG4814|consensus
Probab=92.18 E-value=1.2 Score=47.49 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEV------TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
.+-|.-.++..+|..+++.|...+...|.+. .....++.+|..+.+.+.|.+++++|-+.+|.++-....+..+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3445555566667777777766666555432 2345666666666677777777777766666666665556666
Q ss_pred HHhCCChHHHHHHHHHHHHc
Q psy16607 435 HFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~ 454 (677)
....|..++|+.+.......
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 66666666666666655543
No 344
>KOG4814|consensus
Probab=92.17 E-value=1.5 Score=46.82 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
+.+-+.-.++..+|..+++.|...+..-|.+ .+......+..+|. ...+.+.|.++++++-+.+|.++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL--------~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL--------KLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHhhccccH
Confidence 3445666677788888888888887766655 34556666777776 77888888888888888888888
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
-....+-.+....+.-++|+.+..+...
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 8877777777888888888888777665
No 345
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.99 E-value=0.33 Score=46.90 Aligned_cols=80 Identities=9% Similarity=-0.101 Sum_probs=69.0
Q ss_pred hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHH-HHHHHHHcCCHHHHH
Q psy16607 568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNN-LAVLEAREGHIERAS 646 (677)
Q Consensus 568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~ 646 (677)
.-++++..|...+.... +.|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+.
T Consensus 102 kff~D~k~w~~y~~Y~~-------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~R 162 (435)
T COG5191 102 KFFNDPKIWSQYAAYVI-------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSR 162 (435)
T ss_pred cCCCCcHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHH
Confidence 45788888887777666 8888999999999999999999999977 555677899999999
Q ss_pred HHHHHHHHhCCCChHHHHHH
Q psy16607 647 TYLQAAAASSPYLYETHYNQ 666 (677)
Q Consensus 647 ~~~~~al~~~p~~~~~~~~l 666 (677)
..|.+++.++|+++..|+..
T Consensus 163 a~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 163 AMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHhhhccCCCCchHHHHH
Confidence 99999999999999887653
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.93 E-value=0.27 Score=45.42 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=27.9
Q ss_pred HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34444455555555555555555555555555555555555555555555554443
No 347
>KOG2581|consensus
Probab=91.53 E-value=12 Score=38.05 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=59.8
Q ss_pred hcccCHHHHHHHHHHHHhhCc-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHH
Q psy16607 300 HHENDVASAMDLAVESTKACE-FRD-------WWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMI 364 (677)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la 364 (677)
+...++.+|..+-+..+.... .+. ...++.+..++...|+...-...+...+.... .......+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 345777777777666553211 000 11123344444455555544444444443221 122333444
Q ss_pred HHHHHcCChHHHHHHHHHHHH--cCC--CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607 365 RVYIRLDQPIRAIDIGRNALD--CYP--NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT 423 (677)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 423 (677)
+.|...+.|+.|.....+..- ... .....++.+|.+..-+++|..|.++|-+++...|.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 555555666666555554321 011 11234455666666666666666666666666664
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.32 E-value=4.4 Score=37.26 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC----CHHHHHHHHHHHHhCCChHHH
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT----CMEAIACIGVNHFYNDQPEVA 444 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A 444 (677)
++..+.+|..|. ..+.++++..+.+++++.+. +++.+..|+.++...|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444443 33444555555555444322 244555555555555555444
No 349
>KOG1310|consensus
Probab=91.31 E-value=0.59 Score=48.60 Aligned_cols=103 Identities=13% Similarity=-0.011 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhCcCCHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL---NNMPMSVKYYKLILKRDATCMEAIACIG 432 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 432 (677)
..+-+..-|.--+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.|+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3444444444444445567778888888888887777777777777654 4555666666777777887778888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 433 VNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
.++...+++.+|+.+...+....|.+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 88888888888887777766666644
No 350
>KOG0529|consensus
Probab=91.26 E-value=19 Score=36.86 Aligned_cols=170 Identities=11% Similarity=0.021 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHH------------HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC-
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIF------------EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ- 440 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 440 (677)
.++++.-.+.+..+|+...+|...-.++ .+..-.++-+.+...+++.+|+...+|+....++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 3455555555556665544443222221 122245666778888899999999999999998887764
Q ss_pred -hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607 441 -PEVALLFYRRLLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515 (677)
Q Consensus 441 -~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~ 515 (677)
+..=+++++++++.+|.+-.+|...=.+.... ....+=+++..+++..++.+ ..+|.....++. .+...-.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSN--YsaWhyRs~lL~--~l~~~~~ 201 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSN--YSAWHYRSLLLS--TLHPKEA 201 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchh--hhHHHHHHHHHH--Hhccccc
Confidence 57778899999999998877776544443332 23566678888888888887 888887776653 2211112
Q ss_pred CCC------HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607 516 NDQ------PEVALLFYRRLLQMGLYNAELFNNLALCC 547 (677)
Q Consensus 516 ~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 547 (677)
.|+ ...-++....++-.+|++..+|+..-..+
T Consensus 202 ~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 202 DGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred cCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 332 24455666777888999998887643333
No 351
>KOG1310|consensus
Probab=91.15 E-value=0.96 Score=47.09 Aligned_cols=51 Identities=25% Similarity=0.161 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
+.-.|+.....++.++|....+++.|+.++.+++++.+|+.+...+....|
T Consensus 426 d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 426 DSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 334444444445555555555555555555555555555555544444444
No 352
>KOG1839|consensus
Probab=91.13 E-value=2.6 Score=49.21 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCChHHHHH------HHHH-HHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------Cc
Q psy16607 358 EAFIRMIRVYIRLDQPIRAID------IGRN-ALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------DA 422 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p 422 (677)
.-....+......|.+.+|.+ .+.. .-.+.|.....+..++.++.+.|++++|+..-.++.-+ .|
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344555666666677776666 4442 33456778888999999999999999999887776543 23
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607 423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 489 (677)
+....+.+++...+..++...|+..+.++... .|.......+++.++...++++.|+.+++.|+..+
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888999988888763 35555677888999999999999999999998754
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.01 E-value=0.53 Score=30.77 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSL 566 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 566 (677)
.++.++|.+|...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56889999999999999999999999984
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=16 Score=35.31 Aligned_cols=200 Identities=11% Similarity=0.071 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC---------CHHHHHHHHHHHHHcCChHHHHHHHH---HHHHcC--CCcHHHH
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT---------DIEAFIRMIRVYIRLDQPIRAIDIGR---NALDCY--PNEVTIM 394 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~--p~~~~~~ 394 (677)
.+++-..+.+++++|+..|.+.+...- ...+...++.+|...|++..-.+... .+.... |....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 455555666667777777776665421 23456667777777776554333222 222221 1111111
Q ss_pred HHHHHHH-HHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCHHH
Q psy16607 395 TEMARIF-EGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQM------GLYNAEL 461 (677)
Q Consensus 395 ~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~ 461 (677)
..+..-+ .....++.-+......++..... ...-..++.++++.|+|.+|+......+.. .+.-..+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 1111111 12233444444444444432221 223356788899999999999988766542 2334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~ 532 (677)
+..-..+|....+..++...+..|-.....- .-+....++-. ....-++...+|.-|..+|-++++-
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL----~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL----LSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH----hccceeeccccchhHHHHHHHHHhc
Confidence 7777888888888888887776654332110 00111111110 0111124677889999999888854
No 355
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.80 E-value=0.45 Score=46.03 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=42.4
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607 384 LDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC-IGVNHFYNDQPEVALLFYRRLLQMGLYNAELF 462 (677)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 462 (677)
-...|+++..|...+....+.|.+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...+.+++..+|++|.+|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 33445555555555555555555555555555555555555555543 33334445555555555555555555555554
Q ss_pred H
Q psy16607 463 N 463 (677)
Q Consensus 463 ~ 463 (677)
.
T Consensus 180 ~ 180 (435)
T COG5191 180 I 180 (435)
T ss_pred H
Confidence 3
No 356
>KOG1839|consensus
Probab=90.51 E-value=2.9 Score=48.85 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCHHHHHH------HHHHHHc-cCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHH
Q psy16607 329 QLGKCYFSLGLIREAQQ------QFNSALN-QFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY--------PNEVT 392 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~------~~~~al~-~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 392 (677)
..|......|.+.+|.+ ++..... ..| ....+..++.++.+.+++++|+..-.++.-+. |+...
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 45666666777777766 4443333 233 56788999999999999999999887765332 44566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--------
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-------- 456 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------- 456 (677)
.+.+++......++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.+++...
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence 7788888888888999999998888765 344556667888888888999999999999988432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 457 YNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
.....+..+++.+...+++..|....+....
T Consensus 1097 ~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 1334556666777666766666665555443
No 357
>KOG2422|consensus
Probab=90.36 E-value=21 Score=38.21 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=37.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHH-hccCHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCF-YSQQYDMVVTCFERA 563 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a 563 (677)
+.|-+.-|.++++-.++++|. +|-+...+...|. +..+|.=-+..++..
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 789999999999999999998 8876666665553 455666556555554
No 358
>KOG3807|consensus
Probab=90.01 E-value=21 Score=35.27 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607 555 MVVTCFERALSLALNENAADVWYNIS 580 (677)
Q Consensus 555 ~A~~~~~~al~~~~~p~~~~~~~~l~ 580 (677)
.|++.+.++++ .+|.-+..+..+-
T Consensus 380 ~AvEAihRAvE--FNPHVPkYLLE~k 403 (556)
T KOG3807|consen 380 NAVEAIHRAVE--FNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHhh--cCCCCcHHHHHHH
Confidence 47788888888 7777666555443
No 359
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.81 E-value=0.41 Score=41.51 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhcccccccc
Q psy16607 15 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD 63 (677)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (677)
+-+|-.++..|+|.-|+++++.++.-||+|.++-.+|+.++.+.++-.+
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3456778999999999999999999999999999999999988776544
No 360
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.60 E-value=1.3 Score=28.20 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q psy16607 627 LSQNNLAVLEAREGHIERASTY--LQAAAASSPYL 659 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~ 659 (677)
+.++.+|..+...|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 54887777764
No 361
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.39 E-value=4.5 Score=41.19 Aligned_cols=108 Identities=11% Similarity=-0.042 Sum_probs=65.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh
Q psy16607 362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP 441 (677)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 441 (677)
.-|..++++++|..|..-|+.++++..+-. +..+ -.+..+...+.-+ ...-..+..||..+++.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~--------a~~k-~~~~~~~di~~va-------SfIetklv~CYL~~rkp 244 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGA--------ALSK-PFKASAEDISSVA-------SFIETKLVTCYLRMRKP 244 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhh--------hccC-CCCCChhhHHHHH-------HHHHHHHHHhhhhcCCC
Confidence 346667777888888877777776543110 0000 0000111111000 11224567788888888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
+-|+....+.+..+|....-+...+.++..+.+|.+|...+--+
T Consensus 245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888877665444
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.21 E-value=3.9 Score=37.63 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=57.3
Q ss_pred HHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCChh
Q psy16607 335 FSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN----EVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~ 408 (677)
..+-.-++|...|-++-.... +++..+.+|..|. ..+.++++.++.+++++.+. +++++..++.++.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 334344677777777655444 7788888888777 46788899998888887543 5788889999999999988
Q ss_pred HHHH
Q psy16607 409 MSVK 412 (677)
Q Consensus 409 ~A~~ 412 (677)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
No 363
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.14 E-value=4.5 Score=39.08 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=58.6
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
..++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-.-..
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987654433
No 364
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.04 E-value=0.66 Score=40.26 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=41.9
Q ss_pred ChHH-HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhc
Q psy16607 118 DSMF-YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD 168 (677)
Q Consensus 118 ~~~~-~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~ 168 (677)
++++ .|..++..|+|.-|+++++.++..+|++.++..+|+.+|.+.++..+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4444 67889999999999999999999999999999999999999876654
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.71 E-value=0.7 Score=26.80 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQ 650 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~ 650 (677)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.62 E-value=36 Score=36.00 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (677)
.+-.++.......-....+.+++....+.-+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ ++..
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~s 148 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKS 148 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchh
Confidence 344444444555556677888887777778888888888877 55677777888888877777777777777776 7778
Q ss_pred HHHHHHHHHHHh
Q psy16607 409 MSVKYYKLILKR 420 (677)
Q Consensus 409 ~A~~~~~~al~~ 420 (677)
++..+|.+++..
T Consensus 149 k~a~~f~Ka~yr 160 (711)
T COG1747 149 KAAEFFGKALYR 160 (711)
T ss_pred hHHHHHHHHHHH
Confidence 888888887653
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.47 E-value=3.2 Score=33.30 Aligned_cols=59 Identities=20% Similarity=0.109 Sum_probs=46.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLY---------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
+.+++..|++.+.+.++.... ...+..++|.++...|++++|+..+++++.++...++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 789999999888888743221 23567789999999999999999999999976554444
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.38 E-value=4.8 Score=39.42 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=59.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 649 (677)
Q Consensus 570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 649 (677)
.....++..++..+. ..|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|
T Consensus 150 e~~~~~l~~lae~~~-------------------~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 150 ELFIKALTKLAEALI-------------------ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHHHH-------------------hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 344556667777777 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy16607 650 QAAAAS 655 (677)
Q Consensus 650 ~~al~~ 655 (677)
++.-+.
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 998774
No 369
>KOG2063|consensus
Probab=88.02 E-value=39 Score=38.83 Aligned_cols=170 Identities=10% Similarity=0.073 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhC----cCCHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCCHH-------
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAE------- 460 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~------- 460 (677)
+..++.+|...|+.++|++.+.+..... +.....+-.+...+...+.. +-..++-.-.+..+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5688999999999999999999988733 33344444455555555554 5555655555555554221
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc-ccccCCCHHHHHHH--HHHHHH
Q psy16607 461 ------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS-TSVYNDQPEVALLF--YRRLLQ 531 (677)
Q Consensus 461 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~-~~~~~~~~~~A~~~--~~~al~ 531 (677)
.-.....-|......+-++.+++.++...... ....+..+...|. .... .....++-+++.+. .++...
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-~~~lht~ll~ly~-e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-STLLHTVLLKLYL-EKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-chHHHHHHHHHHH-HHHhhccCchhccccchhhhHHHHHHH
Confidence 01112233566778888999999998776553 1333444444443 1111 11222333344444 222221
Q ss_pred -------cCCC-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 532 -------MGLY-------NAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 532 -------~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.+|. ....|...+.++.++|+.++|+..|-..+.
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1121 145677788888899999999988876664
No 370
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.58 E-value=1.3 Score=28.51 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
+++..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999864
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.57 E-value=3 Score=33.43 Aligned_cols=56 Identities=27% Similarity=0.195 Sum_probs=45.8
Q ss_pred cCCCHHHHHHHHHHHHccCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 604 GISDTRLAIQCLHLALSIDSS---------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++....
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 899999999888888765322 13567889999999999999999999999976543
No 372
>KOG2396|consensus
Probab=87.30 E-value=43 Score=35.39 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=58.0
Q ss_pred hhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q psy16607 277 SRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG-LIREAQQQFNSALNQFT 355 (677)
Q Consensus 277 ~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 355 (677)
-+.-..++..+..+...++.+ ..+.+.+.+-..+|.+++..+|.+...| ..-|.-.+..+ +.+.|...|.+++..+|
T Consensus 94 yr~at~rf~~D~~lW~~yi~f-~kk~~~~~~v~ki~~~~l~~Hp~~~dLW-I~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAF-CKKKKTYGEVKKIFAAMLAKHPNNPDLW-IYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCCchhH-HhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 334455555566666666664 2233558999999999999998777777 45555555544 49999999999999998
Q ss_pred -CHHHH
Q psy16607 356 -DIEAF 360 (677)
Q Consensus 356 -~~~~~ 360 (677)
.+..|
T Consensus 172 dsp~Lw 177 (568)
T KOG2396|consen 172 DSPKLW 177 (568)
T ss_pred CChHHH
Confidence 44443
No 373
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.91 E-value=28 Score=33.48 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHc-----cCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALS-----IDSSHGL---SQNNLAVLE-AREGHIERASTYLQAAAA 654 (677)
Q Consensus 609 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 654 (677)
++|...|++|+. +.|.+|- ...+.+..| ...|+.++|+...+++++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666666554 4566653 233444444 447888888888877765
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.52 E-value=4.1 Score=39.89 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 419 (677)
.++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35556666677777777777777777777777777777777777777777777777766554
No 375
>PF13041 PPR_2: PPR repeat family
Probab=86.41 E-value=3.2 Score=28.53 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHH
Q psy16607 327 KVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRV 366 (677)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~ 366 (677)
+..+-..+.+.|++++|.++|+++.+.. |+..++..+...
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3556666666677777777777666543 455555554443
No 376
>KOG3807|consensus
Probab=86.39 E-value=37 Score=33.70 Aligned_cols=134 Identities=15% Similarity=0.072 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 439 (677)
-+.+-....+..+..+-++....+++++|+...++..++.- ..--..+|.+.|+++++.... .++........|
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQS 260 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhc
Confidence 34555556677788888888999999999998888887753 233466788888888875432 222222222233
Q ss_pred ChHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 440 QPEVALLFYRRLLQMGLYNA--ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
...+|. .+.+ .+. .+-..++.|..++|+..+|++.++...+..|-.....++-++...+.
T Consensus 261 ~~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalL 322 (556)
T KOG3807|consen 261 PQHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALL 322 (556)
T ss_pred cchhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 222222 1111 122 33456788888889999999888887766553222333444444443
No 377
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=5.3 Score=38.59 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=43.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607 364 IRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI 428 (677)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 428 (677)
=..+.+.++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|++.+...++..|+.+.+-
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 34455566677777777777777777776667777777777777777777777666666655443
No 378
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.60 E-value=47 Score=35.12 Aligned_cols=88 Identities=13% Similarity=-0.109 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh--ccc---hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLAL--NEN---AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~p~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
..+....+.++...+.+.+|...+-+.....+ +-. .+-.+-.++.|+.
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~--------------------------- 352 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYA--------------------------- 352 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhc---------------------------
Confidence 44566677788888998888887777766311 112 2233334444430
Q ss_pred HHHHHHHHcc-CC--C-----ChHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 612 IQCLHLALSI-DS--S-----HGLSQN-NLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 612 ~~~~~~al~~-~p--~-----~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
.+.. .| . -...|. .-|.-|.+.|+...|..+|.+++....
T Consensus 353 ------~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 353 ------SLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ------ccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0111 01 1 011222 335677888999999999998887654
No 379
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.39 E-value=2.8 Score=41.57 Aligned_cols=62 Identities=23% Similarity=0.139 Sum_probs=53.5
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
|..+|.+|..+.|.+...++.+|.+....|+.-.|+-+|-+++-...-.+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998776668899999888776
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.72 E-value=6.4 Score=30.00 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=35.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 544 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 544 a~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
|.-++...+..+|+..++++++ ..++..+-+..+|.+.. ++...|+|.+.+++..+-++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~--k~~~~~~rf~~lG~l~q----------------A~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALE--KITDREDRFRVLGYLIQ----------------AHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHh--hcCChHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777777777777 44444455555554432 33377777777766554443
No 381
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.20 E-value=5.2 Score=40.77 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 415 (677)
+--.+..||+++++.+-|+....+.+.++|....-+...|.++..+.+|.+|-..+-
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888777777777777777777777765543
No 382
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.19 E-value=3.5 Score=26.17 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=7.4
Q ss_pred HHHHHHHHHcCChhHHHHH
Q psy16607 395 TEMARIFEGLNNMPMSVKY 413 (677)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~ 413 (677)
..+|..+...|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
No 383
>PF13041 PPR_2: PPR repeat family
Probab=84.14 E-value=5 Score=27.52 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
+...|+.+-..+.+.|++++|.++|+++.+.+..|+...
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 456788899999999999999999999998766666543
No 384
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.65 E-value=1.5 Score=25.43 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFE 561 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~ 561 (677)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998876
No 385
>KOG1463|consensus
Probab=83.01 E-value=54 Score=32.84 Aligned_cols=170 Identities=12% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALS----LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM----- 532 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~----- 532 (677)
-..+..+|...++|.+|+......+. ++......+++..-..+|. ...+..+|...+..+-..
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~--------~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYH--------ALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHH--------HHhcchhHHHHHHHHHHhhcccc
Confidence 34678899999999999987766553 2222223344444444554 677778887777766532
Q ss_pred CCCcHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHH---HHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607 533 GLYNAEL--FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNI---SHVAIITECSPFSFSTHTSYLFIQGIS 606 (677)
Q Consensus 533 ~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l---~~~~~~~~~~p~~~~~~~~~~~l~~~g 606 (677)
.|....+ =..-|..+....+|.-|..+|-++.+-...- ++..+...+ -.|-. ..+
T Consensus 203 cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKI-------------------Mln 263 (411)
T KOG1463|consen 203 CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKI-------------------MLN 263 (411)
T ss_pred cCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHH-------------------Hhc
Confidence 1221111 1223666667789999999999998732222 223333322 22222 445
Q ss_pred CHHH--HHHHHHHHHccCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Q psy16607 607 DTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAR--EGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 607 ~~~~--A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 658 (677)
..++ ++-.-+.+++....+.++....+..+.+ +.+|+.|+..|+.=+..+|-
T Consensus 264 ~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 264 LPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred CHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 5554 3333455666666677788888877754 46899999999888776663
No 386
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.89 E-value=29 Score=36.08 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhC---------cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRD---------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
...+.+++.-+|+|..|++.++-. +++ +-+...++.+|.+|..+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999998887642 222 22466788999999999999999999988764
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.58 E-value=41 Score=31.48 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=50.9
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
.++.+...+++...+.-++..|.+......+-.++.-.|++++|...++-+-. ..|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccc
Confidence 34778889999999999999999999999999999999999999999998888 666553
No 388
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.47 E-value=58 Score=34.47 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh--CcC-----CHHHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKR--DAT-----CMEAIACIGVNH--FYNDQPEVALLFYRRLLQMGLYNAELF 462 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~ 462 (677)
......+.++...|.+.+|...+-+.... ..+ ..-.+-.++.++ ............+++ ...-+
T Consensus 301 R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-------~af~~ 373 (414)
T PF12739_consen 301 RCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-------YAFHM 373 (414)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH-------HHHHH
Confidence 34556666777778877777766665544 211 222333444444 111110000000000 11123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 463 NNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
..-|.-|.+.|+...|..+|.+++.....
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 34467888999999999999999876543
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.80 E-value=13 Score=28.32 Aligned_cols=50 Identities=8% Similarity=0.046 Sum_probs=24.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHH---HHHHHHHHcCChhHHHHHHHH
Q psy16607 367 YIRLDQPIRAIDIGRNALDCYPNEVTIMT---EMARIFEGLNNMPMSVKYYKL 416 (677)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~ 416 (677)
++...+.++|+..++++++..++..+-+. .+..+|...|+|.+.+++-.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544443332 233445555555555554433
No 390
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.72 E-value=36 Score=33.92 Aligned_cols=86 Identities=6% Similarity=-0.004 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607 340 IREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--YPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417 (677)
Q Consensus 340 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 417 (677)
+..-..+|.-.....|++.+-.+.+....+..-...++...+.+... -......+...|..+.++|+.++|...|+++
T Consensus 312 W~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 312 WPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred hHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433322 1112223344455555555555555555555
Q ss_pred HHhCcCCH
Q psy16607 418 LKRDATCM 425 (677)
Q Consensus 418 l~~~p~~~ 425 (677)
+.+.++..
T Consensus 392 i~La~~~a 399 (415)
T COG4941 392 IALARNAA 399 (415)
T ss_pred HHhcCChH
Confidence 55544433
No 391
>KOG4014|consensus
Probab=81.65 E-value=40 Score=30.47 Aligned_cols=155 Identities=12% Similarity=0.018 Sum_probs=76.5
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607 328 VQLGKCYFS-LGLIREAQQQFNSALNQFTDIEAFIRMIRVYIR-----LDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401 (677)
Q Consensus 328 ~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (677)
..||..+.. +.+|++|.+.|..--..+..+...+.+|..+.. .+++..|++.+..+-.. +.+.+...+|.++
T Consensus 38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~ 115 (248)
T KOG4014|consen 38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhh
Confidence 444444332 345666666665554444444455555444332 23556666666665542 3455555555555
Q ss_pred HHc-----C--ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh------------------------CCChHHHHHHHHH
Q psy16607 402 EGL-----N--NMPMSVKYYKLILKRDATCMEAIACIGVNHFY------------------------NDQPEVALLFYRR 450 (677)
Q Consensus 402 ~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------------------~g~~~~A~~~~~~ 450 (677)
..- + +.++|.+++.++-.+. +..+.+.|...|.. ..+.+.|.++.-+
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~k 193 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIK 193 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHH
Confidence 432 1 2456666666665443 33444444444433 2344555555555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q psy16607 451 LLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSL 488 (677)
Q Consensus 451 al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 488 (677)
+.+++ ++.+..++.+.|..- .+.++|..+-.++.++
T Consensus 194 ACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 194 ACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 55543 445555555555432 2345555555555444
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.27 E-value=2.4 Score=25.63 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.1
Q ss_pred hchhHHHHHHHHHhhhCccchhhHHHHhhh
Q psy16607 25 RNFEKCAAICTELLAKNPYDKAAWTLKMRS 54 (677)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (677)
|+++.|..+|++++...|.+..+|..=++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 578999999999999999999999865543
No 393
>KOG2114|consensus
Probab=81.11 E-value=29 Score=38.89 Aligned_cols=57 Identities=14% Similarity=0.001 Sum_probs=35.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 397 MARIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 397 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
.-.++.+..-|+-|+...+.- ..+++ -.......|..++..|++++|...|-+.+..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345556666677777665442 22332 2445566777777888888888887777764
No 394
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.58 E-value=36 Score=32.76 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhh---ccchH---HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 553 YDMVVTCFERALSLAL---NENAA---DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 553 ~~~A~~~~~~al~~~~---~p~~~---~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
.++|...|++|+.++. .|.++ ....+.+..|. ..+|+.++|+...++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~y------------------ei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYY------------------EILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH------------------HTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHH------------------HHcCChHHHHHHHHHHHH
Confidence 3677888888877542 34444 23334444432 279999999998888775
No 395
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=80.24 E-value=2.6 Score=25.58 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhCccchhhHHHHhhhh
Q psy16607 30 CAAICTELLAKNPYDKAAWTLKMRSL 55 (677)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (677)
-++.+++++.+||.|..+|.-|.-++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHH
Confidence 46788999999999999999886654
No 396
>PF12854 PPR_1: PPR repeat
Probab=79.74 E-value=4 Score=25.45 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 625 HGLSQNNLAVLEAREGHIERASTYLQAA 652 (677)
Q Consensus 625 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 652 (677)
+..+|..+-..+.+.|+.++|.+.|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4678889999999999999999998864
No 397
>PF12854 PPR_1: PPR repeat
Probab=79.41 E-value=4.1 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
.+...|..+...|.+.|+.++|.++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45678899999999999999999999864
No 398
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=78.78 E-value=4.4 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKR 420 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 420 (677)
++..+|.+-...++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666666665544
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.05 E-value=6.1 Score=23.67 Aligned_cols=29 Identities=31% Similarity=0.276 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 640 GHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 640 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
|+.+.|...|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45566666666666666666666655443
No 400
>KOG0276|consensus
Probab=77.90 E-value=37 Score=36.64 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=51.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 447 (677)
.+.|+++.|.++..++ ++..-|..||.+....+++..|.++|.++..... |-.++...|+-+--..+
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~--------LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGS--------LLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhh--------hhhhhhhcCChhHHHHH
Confidence 4566666666554443 3455577777777777777777777776643221 22222333333322222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 448 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
-..+-+....+ .--.+|+..|+++++.+.+.+.
T Consensus 715 a~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGKNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 22222222111 1124566778888877776554
No 401
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.78 E-value=4.6 Score=24.67 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNE 570 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p 570 (677)
.|+.+-..|.+.|++++|...|.++.+.+..|
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 36678888999999999999999988744444
No 402
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=77.45 E-value=47 Score=28.71 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=13.5
Q ss_pred CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
+.....+.+++.++..++.+...+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 34444444444444443333334444444443
No 403
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.44 E-value=8.1 Score=38.23 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471 (677)
Q Consensus 410 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 471 (677)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555444333334444444444444
No 404
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=77.25 E-value=47 Score=28.67 Aligned_cols=49 Identities=10% Similarity=-0.009 Sum_probs=30.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 483 (677)
.+...+.+...+.+++.++..++.++..+..+..+|.+. +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344456677777777777777666667777777777654 2334444444
No 405
>KOG2063|consensus
Probab=76.22 E-value=1.6e+02 Score=34.20 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL 530 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al 530 (677)
...|...+..+. +.|+.++|+..|-..+
T Consensus 684 ~~l~ee~aill~--------rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 684 DELYEERAILLG--------RLGKHEEALHIYVHEL 711 (877)
T ss_pred hhHHHHHHHHHh--------hhhhHHHHHHHHHHHh
Confidence 445666666666 7899999988887655
No 406
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.20 E-value=5.8 Score=26.52 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 630 NNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 630 ~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
+.|+..|...|+.+.|+..+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999999995
No 407
>KOG2114|consensus
Probab=75.43 E-value=1.5e+02 Score=33.62 Aligned_cols=28 Identities=11% Similarity=-0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALD 385 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (677)
..+...|..++..|++++|...|-+.+.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4444455555555555555555555443
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.34 E-value=5.6 Score=26.59 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=22.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
+.++..|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999986
No 409
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.50 E-value=87 Score=30.37 Aligned_cols=81 Identities=17% Similarity=0.065 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhh
Q psy16607 441 PEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNAL 510 (677)
Q Consensus 441 ~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l 510 (677)
....++++.++...... ...+...+|..|+..|++++|+++|+.+......+ ....+...+..++.
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~---- 229 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK---- 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----
Confidence 34455666666554321 23455678999999999999999999986654433 12334444455554
Q ss_pred cccccCCCHHHHHHHHHHH
Q psy16607 511 STSVYNDQPEVALLFYRRL 529 (677)
Q Consensus 511 ~~~~~~~~~~~A~~~~~~a 529 (677)
..|+.+..+.+.-++
T Consensus 230 ----~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 ----RLGDVEDYLTTSLEL 244 (247)
T ss_pred ----HhCCHHHHHHHHHHH
Confidence 777777766655443
No 410
>KOG4521|consensus
Probab=74.05 E-value=1.3e+02 Score=35.36 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH------HcCCh----HHHHHHHHHHHHcCCCcHHH
Q psy16607 324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYI------RLDQP----IRAIDIGRNALDCYPNEVTI 393 (677)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~------~~g~~----~~A~~~~~~al~~~p~~~~~ 393 (677)
....+.+|.+|...|+..+|+.+|.++..-.....++..+..-.. ..|+. ..|+.+|.+
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlk----------- 988 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLK----------- 988 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHH-----------
Confidence 334466777777777777777777777664443334333332211 11111 112233333
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH---HHHHHHH
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA---ELFNNLA 466 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la 466 (677)
...++...+-.+.+++...+|++.-|.+ +.....+-..+...|.+-+|... +-.+|+.. ..+..+.
T Consensus 989 ---v~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 989 ---VVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred ---HHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHH
Confidence 3344556667777777777777765443 33334445555666777766543 33344422 3455566
Q ss_pred HHHHHcCCHH
Q psy16607 467 LCCFYSQQYD 476 (677)
Q Consensus 467 ~~~~~~g~~~ 476 (677)
.++++.|+++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 6667766654
No 411
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=73.78 E-value=1e+02 Score=30.91 Aligned_cols=182 Identities=15% Similarity=0.035 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy16607 373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 452 (677)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 452 (677)
-++|+.+-+-...+.|..++++-.++.+..+..+...=...--..+-+...+...| ..+-.+++...+.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHH
Confidence 47889888888999999999988888777653321100000000011111222222 2233567777777777
Q ss_pred HcCC-CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607 453 QMGL-YNAELFNNLALCCFY-----SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY 526 (677)
Q Consensus 453 ~~~~-~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~ 526 (677)
.... .-....-.++.++.. .-+|..-..+|+-.....|++ .+-.|.+.... +..-.+.++...
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP---vV~LNRAVAla--------~~~Gp~agLa~v 352 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP---VVTLNRAVALA--------MREGPAAGLAMV 352 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC---eEeehHHHHHH--------HhhhHHhHHHHH
Confidence 6543 222333334444332 245666777777777778874 34444454444 444566677766
Q ss_pred HHHHHc--CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607 527 RRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 575 (677)
Q Consensus 527 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~ 575 (677)
+..... -......+...|..+.++|+.++|...|++++. +.++..+.
T Consensus 353 e~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~aer 401 (415)
T COG4941 353 EALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAAER 401 (415)
T ss_pred HHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChHHH
Confidence 666543 223445667789999999999999999999999 44544443
No 412
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=73.32 E-value=8.9 Score=23.33 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLAL 568 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 568 (677)
.|..+..++.+.|+++.|..+|+.+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 567788899999999999999999887443
No 413
>KOG4279|consensus
Probab=73.31 E-value=36 Score=37.63 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 439 DQPEVALLFYRRLLQM-GLYNAELFNNLALCCFY---------SQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 439 g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
|+-++|+...-.+++. .+-.++.+...|++|.. .+..+.|+..|+++++..|. ...-.+++..+.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~---~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL---EYSGINLATLLR 331 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch---hhccccHHHHHH
Confidence 4555666555555543 23345555555555543 24566778888888887776 333345555444
No 414
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.09 E-value=10 Score=35.22 Aligned_cols=59 Identities=20% Similarity=0.080 Sum_probs=54.9
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
+.+.+...+|+...+.-++.+|.+......+-.++.-.|++++|...++-+-++.|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 33888999999999999999999999999999999999999999999999999999875
No 415
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.98 E-value=97 Score=30.27 Aligned_cols=198 Identities=11% Similarity=0.003 Sum_probs=118.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----CcCCHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYP--------NEVTIMTEMARIFEGLNNMPMSVKYYKLILKR-----DATCMEA 427 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 427 (677)
..+++-..+.+++++|+..|.+.+...- +.......++.+|...|++..-.+......+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4567777788999999999999987632 12346778999999999877654444332221 1222222
Q ss_pred HHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----hcccchHH
Q psy16607 428 IACIGVNH-FYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVTCFERALSL----ALNENAAD 496 (677)
Q Consensus 428 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~ 496 (677)
...+..-+ .....++.-+..+...++...... ..-..+..++++.|+|.+|+......+.. +.......
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22332222 223455666666666655432221 23345678899999999999887665532 22222344
Q ss_pred HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----CCCcHHHHH--HHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-----GLYNAELFN--NLALCCFYSQQYDMVVTCFERALSL 566 (677)
Q Consensus 497 ~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~ 566 (677)
++..-..+|. ...+..++...+..+... .|....+.. .-|...+...+|.-|..+|-++++-
T Consensus 167 vhllESKvyh--------~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYH--------EIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHH--------HHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 5555555665 566666666666555422 232222222 2355667778999999999998873
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.78 E-value=59 Score=27.69 Aligned_cols=82 Identities=10% Similarity=-0.021 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607 517 DQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~ 591 (677)
+....-...+++++....++. .-+..+=..|... ...+...|+.+....+....+..|...|..+.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le------- 110 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLE------- 110 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-------
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHH-------
Confidence 445555666777664433221 1122222222222 23899999999886677788888999999988
Q ss_pred CcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 592 SFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
..|++++|.+.|+.++
T Consensus 111 ------------~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 111 ------------KRGNFKKADEIYQLGI 126 (126)
T ss_dssp ------------HTT-HHHHHHHHHHHH
T ss_pred ------------HcCCHHHHHHHHHhhC
Confidence 9999999999998864
No 417
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.39 E-value=1e+02 Score=30.30 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 428 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
+...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.+++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456777888888888888888888888888888888888888888777777776653
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.96 E-value=1e+02 Score=30.13 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=35.5
Q ss_pred cCCCHHHHHHHHHHHHcc----CCC-----------ChHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHH
Q psy16607 604 GISDTRLAIQCLHLALSI----DSS-----------HGLS-QNNLAVLEAREGH---IERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~----~p~-----------~~~~-~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
..++...|...+..-.+. +|+ .+.. +..+-..-.+.++ +..=.+.|+..++.+|.......
T Consensus 153 ~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~ 232 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLD 232 (260)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHH
Confidence 788888888877665544 332 2211 1111222233343 33333445555666777888888
Q ss_pred HHHHHHHhc
Q psy16607 665 NQAVISNLV 673 (677)
Q Consensus 665 ~la~~~~~~ 673 (677)
.+|..|+..
T Consensus 233 ~IG~~yFgi 241 (260)
T PF04190_consen 233 KIGQLYFGI 241 (260)
T ss_dssp HHHHHHH--
T ss_pred HHHHHHCCC
Confidence 899998863
No 419
>KOG0529|consensus
Probab=71.78 E-value=1.3e+02 Score=31.16 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh------------ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFY------------SQQYDMVVTCFERALSLALNENAADVWYNISHVAIIT 586 (677)
Q Consensus 519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~ 586 (677)
.+++++.=.+.+..+|+...+|+..-.++.. ....++-+.+...++. .+|+...+|+....++.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~--~npksY~aW~hR~w~L~-- 120 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALK--VNPKSYGAWHHRKWVLQ-- 120 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHH--hCchhHHHHHHHHHHHH--
Confidence 4567777777788888888777754433322 2245666777888888 89999999999998876
Q ss_pred hcCCCCcccchhhhHHhcCC--CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCh
Q psy16607 587 ECSPFSFSTHTSYLFIQGIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG----HIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 587 ~~~p~~~~~~~~~~~l~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~ 660 (677)
+.+ ++..=++..+++++.+|.+-.+|...=.+..... ...+=+++..+++.-++.|.
T Consensus 121 -----------------~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 121 -----------------KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred -----------------hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence 554 3678889999999999999888876655554432 35677888899999999999
Q ss_pred HHHHHHHHHHH
Q psy16607 661 ETHYNQAVISN 671 (677)
Q Consensus 661 ~~~~~la~~~~ 671 (677)
.+|.+...++.
T Consensus 184 saWhyRs~lL~ 194 (421)
T KOG0529|consen 184 SAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHH
Confidence 99998887765
No 420
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.66 E-value=48 Score=32.47 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=41.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..|.+.+|+++.++++..+|-+...+..+-.++...|+--.|++.|++.-+
T Consensus 291 e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 291 EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 778888888888888888888888888888888888887777777776654
No 421
>KOG0546|consensus
Probab=71.61 E-value=7.1 Score=39.00 Aligned_cols=66 Identities=12% Similarity=-0.060 Sum_probs=58.3
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
+.+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+..+
T Consensus 287 k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 287 KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 888999998888888888888899999999999999999999999999999999998766554443
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.36 E-value=71 Score=33.33 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHH--HHHhccCHHHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNA--ELFNNLAL--CCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~--~~~~~g~~~~A~~~~~~al~ 565 (677)
..++|..|.+.+..+...-|.+. ..+..+.. .+...-++.+|.+.++..+.
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 78999999999999987533333 34444444 44567889999999999886
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.06 E-value=82 Score=32.86 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCcCCHH--HHHHH--HHHHHhCCChHHHHHHHHHHHH
Q psy16607 396 EMARIFEGLNNMPMSVKYYKLILKRDATCME--AIACI--GVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~ 453 (677)
..+..++..++|..|.+.+......-|.... .+..+ |..+...-++.+|.+.++..+.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555666666666666666553222221 22222 2223344455555555555444
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.10 E-value=24 Score=34.22 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16607 325 WWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLDQPIRAIDIGRNA 383 (677)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (677)
.....+|..|+..|++++|+++|+.+..... ...++..+..|+...|+.+..+.+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3446789999999999999999999865432 3466677788888888887777665544
No 425
>KOG0276|consensus
Probab=69.77 E-value=70 Score=34.66 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL 539 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 539 (677)
+....++..+..+|-.++| +++.+++ +-.+.++ . +.|+++.|.+...++ ++..-
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~---d~rFela---l--------~lgrl~iA~~la~e~-----~s~~K 668 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDP---DQRFELA---L--------KLGRLDIAFDLAVEA-----NSEVK 668 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCCh---hhhhhhh---h--------hcCcHHHHHHHHHhh-----cchHH
Confidence 4455667777777766555 4455552 2233333 2 678888888766554 56677
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 540 ~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
|..||.+....+++..|.++|.++..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 99999999999999999999999876
No 426
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.55 E-value=8 Score=22.86 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 628 SQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 628 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
+|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4667778888888888888888887653
No 427
>KOG0686|consensus
Probab=66.70 E-value=1.6e+02 Score=30.39 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDAT---CMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAE 460 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~ 460 (677)
.++..+|.-|...|+++.|++.|.++-..-.. ....+.++..+-...|+|..-..+..++...- .-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 36778888899999999999999886544332 35667777777788888887777777766541 01223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
+...-|.+...+++|..|.++|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55566777777789999999887664
No 428
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.04 E-value=11 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998876
No 429
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.99 E-value=54 Score=34.02 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC
Q psy16607 352 NQFTDIEAFIRMIRVYIR-------LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC 424 (677)
Q Consensus 352 ~~~p~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 424 (677)
+..|..+.....+.++.. ....-+|+.+++.++...|.+......+..+|..+|-...|...|...--..-..
T Consensus 171 e~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~ 250 (365)
T PF09797_consen 171 ESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQL 250 (365)
T ss_pred ccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHH
Q ss_pred HHHHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 425 MEAIACIGVNHFYNDQPEVAL-LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 483 (677)
-..-+.+..-+...|....+. ..+..++.....+..-.......-++.|.|.+..+..+
T Consensus 251 DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 251 DTLGHLILDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHhHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 430
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.37 E-value=2.5e+02 Score=31.70 Aligned_cols=198 Identities=10% Similarity=-0.064 Sum_probs=116.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcc
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALST 512 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~ 512 (677)
...+.+.|...+.+......-+. .++..++.-....+...+|...+..+.....++ ..+........
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~---~~~e~r~r~Al------ 323 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST---SLLERRVRMAL------ 323 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc---HHHHHHHHHHH------
Confidence 44556667777766544433322 223333333333322556666666554433332 22222222333
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh-cC--
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITE-CS-- 589 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~-~~-- 589 (677)
..++++.+...+..+-..........+-+|.++...|+.++|..+|+++.. +.+ .|-.++.-..... ..
T Consensus 324 --~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~----~~~--fYG~LAa~~Lg~~~~~~~ 395 (644)
T PRK11619 324 --GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ----QRG--FYPMVAAQRLGEEYPLKI 395 (644)
T ss_pred --HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc----CCC--cHHHHHHHHcCCCCCCCC
Confidence 568888887777776554456677888999998889999999999999854 222 2333332221111 00
Q ss_pred CCC---------cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 590 PFS---------FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653 (677)
Q Consensus 590 p~~---------~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 653 (677)
+.. .+.......+...|+...|...+..++.. .+......++.+....|.++.++....++.
T Consensus 396 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~ 466 (644)
T PRK11619 396 DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAGK 466 (644)
T ss_pred CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence 100 01112223677889999999988887764 345667788888889999999888776543
No 431
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.81 E-value=2.5e+02 Score=31.52 Aligned_cols=21 Identities=0% Similarity=0.067 Sum_probs=15.9
Q ss_pred HHHHHHhhhhcChHHHHHHHH
Q psy16607 120 MFYAVDHFHKRNFEKCAAICT 140 (677)
Q Consensus 120 ~~~a~~~~~~~~~~~a~~~~~ 140 (677)
.-.-.-++|.|.+++|+++..
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~ 135 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVAN 135 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 335677889999999999984
No 432
>KOG0686|consensus
Probab=63.38 E-value=1.9e+02 Score=29.96 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
.++..+|.-|...|+++.|++.|-++....... .....|.++-.+-. .+|+|..-..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI-------------------~~~nw~hv~sy~~ 211 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI-------------------YMGNWGHVLSYIS 211 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-------------------hhcchhhhhhHHH
Confidence 356678888999999999999998876643322 22355666666666 7778776666666
Q ss_pred HHHccCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 617 LALSIDS--------SHGLSQNNLAVLEAREGHIERASTYLQAAA 653 (677)
Q Consensus 617 ~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 653 (677)
++...-. -.+.....-|.+...+++|..|..+|-.+.
T Consensus 212 ~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 212 KAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6654310 012344445666667779999988886653
No 433
>KOG4279|consensus
Probab=63.32 E-value=71 Score=35.52 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc-ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS-TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 550 (677)
-|+-++|+...-.+++....- .++.+...|.+|.-.-+. ++...+..+.|+++|+++++..|....- .+++.++...
T Consensus 256 ~GDRakAL~~~l~lve~eg~v-apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aa 333 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPV-APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAA 333 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCC-CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHh
Confidence 477888888888877754332 356666777777411111 2334566788999999999998865432 3455555555
Q ss_pred cC-HHHHHHH
Q psy16607 551 QQ-YDMVVTC 559 (677)
Q Consensus 551 g~-~~~A~~~ 559 (677)
|+ |+...++
T Consensus 334 G~~Fens~El 343 (1226)
T KOG4279|consen 334 GEHFENSLEL 343 (1226)
T ss_pred hhhccchHHH
Confidence 53 3433333
No 434
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=62.25 E-value=17 Score=21.91 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 628 SQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 628 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
+|..+-..|.+.|++++|.+.|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4667778889999999999999988764
No 435
>PRK12798 chemotaxis protein; Reviewed
Probab=62.05 E-value=2.1e+02 Score=29.92 Aligned_cols=213 Identities=9% Similarity=-0.037 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHH-HHHHcCChhHHHHHHHHHHHhCcCCH---HHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC-YPNEVTIMTEMAR-IFEGLNNMPMSVKYYKLILKRDATCM---EAIAC 430 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 430 (677)
+.+.-..-|..-+-.|+-.++.+.+..+-.. .|.....+..|.. ......+..+|++.|..+--..|... .++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3344444444444456666555555443211 1212222222222 23334456666666666655555531 22333
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q psy16607 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507 (677)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l 507 (677)
-..+..+.|+.+++..+-.+-+..+..++.+ +-.+.......++-.. ...+...+..-+.......|..++..-.
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Al- 268 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAAL- 268 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHH-
Confidence 3334455566666665555555554444322 2223333333332111 1223344433222223445555555554
Q ss_pred hhhcccccCCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607 508 NALSTSVYNDQPEVALLFYRRLLQMGL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577 (677)
Q Consensus 508 ~~l~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 577 (677)
-.|+.+-|.-.-.+++.+.. ....+....+....-..++++|+..+...-...+.+.+...+.
T Consensus 269 -------i~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~ 335 (421)
T PRK12798 269 -------IDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLE 335 (421)
T ss_pred -------HcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHH
Confidence 56666666666666665432 2233444444444555667777766665544334455544433
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.65 E-value=17 Score=37.82 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-------cCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALN-------QFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNAL 384 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~-------~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al 384 (677)
..+.+++.-.|+|..|++.++.+-- .-| +..+++.+|-+|+.+++|.+|++.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778888888887765421 112 56677777888888888888877777664
No 437
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=60.49 E-value=16 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHhhhhh
Q psy16607 135 CAAICTELLAKNPYDKAAWTLKMRSLTS 162 (677)
Q Consensus 135 a~~~~~~~l~~~p~~~~~~~~~~~~l~~ 162 (677)
.++.+.++|..+|.+..+|.-+.-++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4678899999999999999998877654
No 438
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.46 E-value=60 Score=24.68 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 542 NLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 542 ~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..|.-+-+.|++.+|+.+|+.+++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334444555666666666666555
No 439
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.48 E-value=2e+02 Score=28.98 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 625 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
++-+-+..+..+.-.|++.++...+..++-+.|+..
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~ 247 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQS 247 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhh
Confidence 345556666667777888888888888888877743
No 440
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.55 E-value=18 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=16.0
Q ss_pred cCCCHHHHHHHHHHHHcc
Q psy16607 604 GISDTRLAIQCLHLALSI 621 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~ 621 (677)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 889999999999998874
No 441
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=58.29 E-value=11 Score=33.00 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=34.0
Q ss_pred ccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhh
Q psy16607 114 TATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSL 160 (677)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l 160 (677)
..+.+.+++|.+||..++|++|..++.. ..++.+.+++.-+.
T Consensus 72 ~~e~d~yllAksyFD~kEy~RaA~~L~~-----~~s~~~~FL~lYs~ 113 (142)
T PF04049_consen 72 SKEYDKYLLAKSYFDCKEYDRAAHVLKD-----CKSPKALFLRLYSR 113 (142)
T ss_pred hhHHHHHHHHHHHhchhHHHHHHHHHcc-----CCCchHHHHHHHHH
Confidence 4566899999999999999999999874 34777888875553
No 442
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=57.26 E-value=29 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
..|..+..++.+.|+++.|..+|+...+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35677888889999999999999887763
No 443
>KOG0687|consensus
Probab=57.13 E-value=90 Score=31.14 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CcHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP---NEVT---IMTEMARIFEGLNNMPMSVKYYKLILKRDATC---ME 426 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 426 (677)
-.+++...+..|.+.|+-+.|.+.+++..+..- ...+ ....+|..|....-..+.++..+..++...+- -.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 356677777777777777777777766554321 1122 23344555544433334444444444333221 11
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 427 AIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
.-..-|.......++.+|..+|-..+...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 22233444455566666666666665543
No 444
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.99 E-value=25 Score=26.08 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.6
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|.+++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999998888775
No 445
>KOG0546|consensus
Probab=55.71 E-value=17 Score=36.50 Aligned_cols=67 Identities=10% Similarity=-0.090 Sum_probs=31.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH
Q psy16607 397 MARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN 463 (677)
Q Consensus 397 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 463 (677)
++.+-.+.+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|.+..+..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 3444444444444444444444444444444444454444445555555555544444444444333
No 446
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.39 E-value=23 Score=27.01 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=15.4
Q ss_pred cCCCHHHHHHHHHHHHcc
Q psy16607 604 GISDTRLAIQCLHLALSI 621 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~ 621 (677)
..|+|++|+.+|..+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 899999999999888763
No 447
>KOG1920|consensus
Probab=55.09 E-value=4.4e+02 Score=31.54 Aligned_cols=245 Identities=11% Similarity=-0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcC
Q psy16607 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLD 371 (677)
Q Consensus 292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g 371 (677)
...+-.+...+.|+.+-+.++++.-+.. .....=.+-..+|+|+.|+..+.++ ....+-..-..-.+.|
T Consensus 854 ~Lal~VAq~SqkDPkEyLP~L~el~~m~------~~~rkF~ID~~L~ry~~AL~hLs~~-----~~~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 854 DLALLVAQKSQKDPKEYLPFLNELKKME------TLLRKFKIDDYLKRYEDALSHLSEC-----GETYFPECKNYIKKHG 922 (1265)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHhhch------hhhhheeHHHHHHHHHHHHHHHHHc-----CccccHHHHHHHHhcc
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL 451 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (677)
-|.+|+.+|.--.+. ...++...|..+...+.+++|.-.|+++=++.. --.+|...|++.+|+....+.
T Consensus 923 Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gklek--------Al~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 923 LYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERCGKLEK--------ALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred cchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHhccHHH--------HHHHHHHhccHHHHHHHHHhh
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH-
Q psy16607 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL- 530 (677)
Q Consensus 452 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al- 530 (677)
-.-...-...-..++.-+...+++-+|-+.....+.-. ..+...+...+. |++|+.....+-
T Consensus 992 ~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~-----~~av~ll~ka~~------------~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 992 SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP-----EEAVALLCKAKE------------WEEALRVASKAKR 1054 (1265)
T ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-----HHHHHHHhhHhH------------HHHHHHHHHhccc
Q ss_pred ------HcCCCcHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607 531 ------QMGLYNAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADVWY 577 (677)
Q Consensus 531 ------~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~p~~~~~~~ 577 (677)
.+.|.-....-.....+.. .+++..=.+-+.-.-+ .....+..+.
T Consensus 1055 ~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe--~k~~~~~~~~ 1106 (1265)
T KOG1920|consen 1055 DDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRE--NKEKRPEAFA 1106 (1265)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhchhhhh
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.56 E-value=38 Score=31.37 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q psy16607 341 REAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388 (677)
Q Consensus 341 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 388 (677)
+..++..++.++..|++..+..++.++...|+.++|....+++....|
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444555666666667777777777777777777777777777777777
No 449
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=54.22 E-value=2.1e+02 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHc-----cCCCChH---HHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy16607 608 TRLAIQCLHLALS-----IDSSHGL---SQNNLAVL-EAREGHIERASTYLQAAAA 654 (677)
Q Consensus 608 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~ 654 (677)
.+.|...|+.|++ +.|.+|- ...+.+.. |.-+++.++|....++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777777765 4566653 22334444 4457999999977777665
No 450
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=2.3e+02 Score=27.82 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYS--QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596 (677)
Q Consensus 519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~ 596 (677)
.+.-+.++..+++.+|.+...|...-.++... .++..-....++.++ .++.+..+|...-.+..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld--~DsrNyH~W~YR~~vl~------------ 155 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLD--SDSRNYHVWSYRRWVLR------------ 155 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhc--ccccccceeeeEeeeee------------
Confidence 45566778889999999999999988887765 567777778888888 77877776654443331
Q ss_pred hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH---HHHHHcCC------HHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA---VLEAREGH------IERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
....+.....+..-.++-..++..++.+..+|.+.- ......|+ +++-+++.-.++-.+|++..+|..+-
T Consensus 156 -~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 156 -TIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred -cchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 000001333344445666677788888888888763 33333443 45566666777778899988776544
Q ss_pred H
Q psy16607 668 V 668 (677)
Q Consensus 668 ~ 668 (677)
.
T Consensus 235 ~ 235 (328)
T COG5536 235 G 235 (328)
T ss_pred H
Confidence 3
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.33 E-value=43 Score=31.02 Aligned_cols=51 Identities=20% Similarity=0.041 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 608 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
.+..++..++.+...| ++.++.+++.++...|+.++|....+++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455666677777777 48899999999999999999999999999999944
No 452
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=52.83 E-value=3.5e+02 Score=29.72 Aligned_cols=134 Identities=10% Similarity=-0.073 Sum_probs=79.7
Q ss_pred HHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16607 335 FSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLD--QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVK 412 (677)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (677)
...|+.++|+..+++-....+..-.....+.++...+ ....-..+|+.+++++|.....+..+...+.. ...+.+
T Consensus 320 l~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~ 396 (547)
T PF14929_consen 320 LIGGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQ 396 (547)
T ss_pred eccccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHH
Confidence 3447888888887775554444444555566666655 56667788888888888777666665555544 334444
Q ss_pred HHHHH---HHhCcCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHc
Q psy16607 413 YYKLI---LKRDATCMEAIACIGVNHFY-NDQPEVALLFYRRLLQM---------GLYNAELFNNLALCCFYS 472 (677)
Q Consensus 413 ~~~~a---l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~ 472 (677)
.++-. +.+.| ....|..++.++.+ .++++.-.+....++++ ...+..+|..+.....+.
T Consensus 397 Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 397 LLEMIALHLDLVP-SHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHHHhhcCC-CchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 44422 23333 56678888888877 56665444444444421 123455666665554433
No 453
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=52.43 E-value=3.5e+02 Score=30.37 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=55.1
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C--HHHHHHHHHHH---HHcCC
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D--IEAFIRMIRVY---IRLDQ 372 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~--~~~~~~la~~~---~~~g~ 372 (677)
++..|+|+.|++++-+. . ...... ..+|.++...|-..-.-..-...+...+ + .--+..+...| +...+
T Consensus 268 LlLtgqFE~AI~~L~~~-~---~~~~dA-VH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 268 LLLTGQFEAAIEFLYRN-E---FNRVDA-VHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHTT-HHHHHHHHHT------T-HHHH-HHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHhhHHHHHHHHHhh-c---cCcccH-HHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 44478999998888771 1 112222 3455555555544433332244444443 1 11112222222 34567
Q ss_pred hHHHHHHHHHHHHcC-CCcHHH-HHHHHHHHHHcCCh--------------hHHHHHHHHHHHhCcCC---HHHHHHHHH
Q psy16607 373 PIRAIDIGRNALDCY-PNEVTI-MTEMARIFEGLNNM--------------PMSVKYYKLILKRDATC---MEAIACIGV 433 (677)
Q Consensus 373 ~~~A~~~~~~al~~~-p~~~~~-~~~la~~~~~~g~~--------------~~A~~~~~~al~~~p~~---~~~~~~la~ 433 (677)
..+|+++|--+-... |..... +..+..+....+++ .-.++-..+.+...... ..+....|.
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 778887776543322 222222 22223333322222 22222222233333222 233445566
Q ss_pred HHHhCCChHHHHHHHHH
Q psy16607 434 NHFYNDQPEVALLFYRR 450 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~ 450 (677)
-....|++++|+.+|.-
T Consensus 423 ~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHCT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66777777777766654
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.12 E-value=2.7e+02 Score=27.41 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHH---HHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EVTIM---TEMARIFEGLNNMPMSVKYYKLILKRDATC---ME 426 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 426 (677)
..+++.++|..|.+.++.+.+.++..+.+...-. ..+++ ..+|.+|....-.++.++.....++...+- -.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4678888999999999998888888877654321 23333 345555655555566666666666654431 22
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (677)
.-...|.......++.+|..++-..+....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 233445556666778888777777766543
No 455
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=48.59 E-value=43 Score=25.48 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=33.1
Q ss_pred HHHHHHhhhhcChHHHHHH-------HHHHhhcCCCCchhHHHHHhhhhhhhhhhc
Q psy16607 120 MFYAVDHFHKRNFEKCAAI-------CTELLAKNPYDKAAWTLKMRSLTSQLSVDD 168 (677)
Q Consensus 120 ~~~a~~~~~~~~~~~a~~~-------~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~ 168 (677)
...|+.+-+.|+|++|+.+ +.+++...|++...-..+.++-.-..+.+.
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~ 65 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEV 65 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 3478888888998877555 455566689887766666666555544443
No 456
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=47.16 E-value=6.3 Score=43.11 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHhcccCHHHHHHHHHHHH--hhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--ccCC--CHHHHHHHHHHHHHcC
Q psy16607 298 LYHHENDVASAMDLAVEST--KACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSAL--NQFT--DIEAFIRMIRVYIRLD 371 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p--~~~~~~~la~~~~~~g 371 (677)
.++..|++..|..++.+.. ...+.....+....+.+....|++++|+..+...- ...+ ....+...+.++...|
T Consensus 33 a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~ 112 (536)
T PF04348_consen 33 ALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQG 112 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3556789999988888776 23333344445677888888899999998887421 1222 4455666788888888
Q ss_pred ChHHHHHHHHHH
Q psy16607 372 QPIRAIDIGRNA 383 (677)
Q Consensus 372 ~~~~A~~~~~~a 383 (677)
++-+|...+-.+
T Consensus 113 ~~l~Aa~~~i~l 124 (536)
T PF04348_consen 113 DPLAAARERIAL 124 (536)
T ss_dssp ------------
T ss_pred CHHHHHHHHHHH
Confidence 887777765443
No 457
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=46.92 E-value=2.7e+02 Score=27.50 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607 376 AIDIGRNALDCYPNEVTIMTEMARIFEG 403 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (677)
-...++.-++..|++..++..+|..+.+
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 4555566666777777776666665543
No 458
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.52 E-value=41 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=12.9
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 77888888777777665
No 459
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.48 E-value=38 Score=25.74 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.6
Q ss_pred hccCHHHHHHHHHHHHHHh
Q psy16607 549 YSQQYDMVVTCFERALSLA 567 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~ 567 (677)
..|+|++|+.+|..+++..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4578888888888888744
No 460
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.11 E-value=3.4e+02 Score=27.43 Aligned_cols=103 Identities=9% Similarity=-0.034 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCChhHHHHHHHHHHHh---CcCC----HHHHHHHHHHHHhCCChHHHH
Q psy16607 376 AIDIGRNALDCYPNEVTIM---TEMARIFEGLNNMPMSVKYYKLILKR---DATC----MEAIACIGVNHFYNDQPEVAL 445 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~ 445 (677)
+...|++..+.-|+..... ..-|.++...++|.+....+..+-.. +.+. +..-...|.....
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vN-------- 111 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIN-------- 111 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhc--------
Confidence 4456777777666554432 24577777788887777766544322 1110 1111111211111
Q ss_pred HHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607 446 LFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 446 ~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 489 (677)
+...+.+|.. .-++..+|.-|.+.++++.|.-.|.++....
T Consensus 112 ---DNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 112 ---DNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred ---cchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 1111112221 2345667778888888888888888876653
No 461
>PRK12798 chemotaxis protein; Reviewed
Probab=44.44 E-value=4e+02 Score=27.93 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIR-VYIRLDQPIRAIDIGRNALDCYPNEV---TIMTEMARIF 401 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 401 (677)
...|..-+-.|+-.++.+.+..+.... +....+..|.. ......+..+|+..|+.+--..|... .++..-..+.
T Consensus 116 L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la 195 (421)
T PRK12798 116 LADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIA 195 (421)
T ss_pred HHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHH
Confidence 455666777899999998887765433 24444444433 33445789999999999988888653 2555666677
Q ss_pred HHcCChhHHHHHHHHHHHhCcCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHcCCHH
Q psy16607 402 EGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFYRRLLQM-GLY-NAELFNNLALCCFYSQQYD 476 (677)
Q Consensus 402 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~la~~~~~~g~~~ 476 (677)
.+.|+.+++..+-.+.+.....++ ..+-..+..+...++-. -.+.+..++.. +|. ...+|..++..-.-.|+.+
T Consensus 196 ~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~ 274 (421)
T PRK12798 196 AQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTE 274 (421)
T ss_pred HhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHH
Confidence 889999998888877777655543 33333444444443222 22335555554 433 3568888999999999999
Q ss_pred HHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH
Q psy16607 477 MVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529 (677)
Q Consensus 477 ~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a 529 (677)
-|.-.-++++.+.... ....+...-+.... -..++++++..+...
T Consensus 275 lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v--------~s~~~~~al~~L~~I 321 (421)
T PRK12798 275 LARFASERALKLADPDSADAARARLYRGAALV--------ASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHcc--------CcccHHHHHHHHhcC
Confidence 9999999998886443 11222222222222 456677777766654
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.08 E-value=39 Score=25.99 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.5
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|+.++|+.+|++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 66888888888888775
No 463
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=42.02 E-value=8.5 Score=42.14 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--cCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH-
Q psy16607 309 MDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN--QFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNA- 383 (677)
Q Consensus 309 ~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~a- 383 (677)
..++.++-...+.....++..-+..+...|++..|...+.++-. +.+ ........+.+....|++++|+..+...
T Consensus 9 ~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~ 88 (536)
T PF04348_consen 9 EQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQD 88 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCC
Confidence 33444444444444555667788999999999999999998773 334 5566778899999999999999998741
Q ss_pred -HHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607 384 -LDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKR 420 (677)
Q Consensus 384 -l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 420 (677)
..+.+ .....+..++.++...|++-+|...+-+.-.+
T Consensus 89 ~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 89 LWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------------------
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 11111 12345667788999999988888766554433
No 464
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.93 E-value=52 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.1
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 78888888888888775
No 465
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.92 E-value=3.3e+02 Score=25.99 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q psy16607 307 SAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386 (677)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (677)
....-|....... ........|..+...+++++|+..+-.. .. .......+..++...|+...|+.+++.. .-
T Consensus 64 ~~~~~Fa~~f~ip---~~~~~~~~g~W~LD~~~~~~A~~~L~~p-s~--~~~~~~~Il~~L~~~~~~~lAL~y~~~~-~p 136 (226)
T PF13934_consen 64 ELAESFARAFGIP---PKYIKFIQGFWLLDHGDFEEALELLSHP-SL--IPWFPDKILQALLRRGDPKLALRYLRAV-GP 136 (226)
T ss_pred cHHHHHHHHhCCC---HHHHHHHHHHHHhChHhHHHHHHHhCCC-CC--CcccHHHHHHHHHHCCChhHHHHHHHhc-CC
Confidence 3444444444333 2333345566666666666666666322 01 1222223444555567777666666542 23
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 417 (677)
.....+.......+ ...+...+|..+-++.
T Consensus 137 ~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 137 PLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 33344444333333 4556777776665554
No 466
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.77 E-value=53 Score=20.23 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHccCCCHHHHHH
Q psy16607 340 IREAQQQFNSALNQFTDIEAFIR 362 (677)
Q Consensus 340 ~~~A~~~~~~al~~~p~~~~~~~ 362 (677)
++.|...|++.+...|++..|..
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHH
Confidence 34444444444444444444433
No 467
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.71 E-value=59 Score=24.64 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=13.8
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 78888888888887765
No 468
>KOG1114|consensus
Probab=40.64 E-value=6.6e+02 Score=29.40 Aligned_cols=49 Identities=12% Similarity=0.012 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy16607 304 DVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN 352 (677)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (677)
.-+++.++|+...+..|...+.....+.....+...-.+-.+..+++++
T Consensus 1090 ~~e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~ 1138 (1304)
T KOG1114|consen 1090 ADEEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILS 1138 (1304)
T ss_pred hHHHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 4456888888888888755555544555554444333333344344444
No 469
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.99 E-value=3.1e+02 Score=25.48 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHH
Q psy16607 330 LGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMI 364 (677)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la 364 (677)
+-......|+++.|-+.|--++...+ +....-.+|
T Consensus 47 lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG 82 (199)
T PF04090_consen 47 LLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIG 82 (199)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHH
Confidence 33444455667777776666666554 444433333
No 470
>KOG4151|consensus
Probab=39.85 E-value=90 Score=35.02 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=72.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 544 ALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 544 a~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
+..+++.+++.+|.--|..++. ..| .......+.+.++. +...|++..++.-..-++
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~--llp~~~~~~a~~~~~~~s~~m-----------------~~~l~~~~~~~~E~~la~ 120 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIK--LLPKDHHVVATLRSNQASCYM-----------------QLGLGEYPKAIPECELAL 120 (748)
T ss_pred hhHHhhhhhhhccchhhhhhhe--eccccchhhhhHHHHHHHHHh-----------------hcCccchhhhcCchhhhh
Confidence 4555666677777666666665 333 33344556666664 447788888888888888
Q ss_pred ccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 620 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 620 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
...|....++...+.+|...++++-|++...-.....|.+..+..
T Consensus 121 ~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 121 ESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 888888888888888888888888888887777778888855443
No 471
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.93 E-value=65 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=12.7
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|..+++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 67788888777777665
No 472
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.64 E-value=60 Score=25.00 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=9.7
Q ss_pred cCCCHHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLL 530 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al 530 (677)
..|+.++|+.+|++++
T Consensus 20 E~g~~e~Al~~Y~~gi 35 (79)
T cd02679 20 EWGDKEQALAHYRKGL 35 (79)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3466666666666655
No 473
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=38.27 E-value=5.5e+02 Score=27.83 Aligned_cols=62 Identities=15% Similarity=-0.039 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHH-hhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVEST-KACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN 352 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (677)
.+.+...+.++.|+...|..++.+.- .+.+.....+-...+.+.....++..|...+.+...
T Consensus 65 ~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~ 127 (604)
T COG3107 65 WLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP 127 (604)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch
Confidence 33344445556666666666666665 333322333334556666666666666666665543
No 474
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=37.94 E-value=3.8e+02 Score=25.89 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHh---hccchHH---HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 553 YDMVVTCFERALSLA---LNENAAD---VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 553 ~~~A~~~~~~al~~~---~~p~~~~---~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
.++|...|+.|.+++ +.|.++. ...+.+..|. .-+++.++|....++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~y------------------EI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYY------------------EILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH------------------HHcCCHHHHHHHHHHHHH
Confidence 457888888888764 3355552 2333343332 268999999887777764
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.57 E-value=3.7e+02 Score=25.66 Aligned_cols=22 Identities=5% Similarity=0.327 Sum_probs=15.8
Q ss_pred HcCChhHHHHHHHHHHHhCcCC
Q psy16607 403 GLNNMPMSVKYYKLILKRDATC 424 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~ 424 (677)
..++...|+.++++++.++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3456677888888888887753
No 476
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=37.35 E-value=1.9e+02 Score=24.39 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607 395 TEMARIFEGLNNMPMSVKYYKLILKRDAT---------------CMEAIACIGVNHFYNDQPEVALLFYRR 450 (677)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 450 (677)
..+|....+.+++-.++-.|++++.+..+ .+....++|..+..+|+.+-.+++++-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 34455555555555555555555543211 122334555666666666655555543
No 477
>KOG0889|consensus
Probab=35.72 E-value=1.4e+03 Score=31.61 Aligned_cols=45 Identities=13% Similarity=-0.025 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
++.+...|..+.+.|+.++|-..|..|++++-.-+.+|..-|.-.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566777888888999999999999999888877777777666543
No 478
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.35 E-value=1.4e+02 Score=28.41 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=17.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 638 REGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 638 ~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
..++...|+.++++|++++|+-.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 34577788888888888888753
No 479
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=34.65 E-value=4.3e+02 Score=26.13 Aligned_cols=67 Identities=7% Similarity=-0.013 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC----------------------ChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607 409 MSVKYYKLILKRDATCMEAIACIGVNHFYND----------------------QPEVALLFYRRLLQMGLYNAELFNNLA 466 (677)
Q Consensus 409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~la 466 (677)
.-.+.++.-++..|++..++..+|..+.... -.+.|...+.+++.++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3556677777888988888888877665431 023444445555555555555544444
Q ss_pred HHHHHcCCH
Q psy16607 467 LCCFYSQQY 475 (677)
Q Consensus 467 ~~~~~~g~~ 475 (677)
.+-...|.+
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 444444443
No 480
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=34.53 E-value=3e+02 Score=23.74 Aligned_cols=90 Identities=10% Similarity=-0.057 Sum_probs=0.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCc--------------------------------------------------CCHHH
Q psy16607 398 ARIFEGLNNMPMSVKYYKLILKRDA--------------------------------------------------TCMEA 427 (677)
Q Consensus 398 a~~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------------~~~~~ 427 (677)
|.-..-.|..++..+...+...-.+ ...+.
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 428 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
.-.--.++...|+-++--+.+....+....+++.+..+|.+|.+.|+..++-+.+.+|.+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 481
>KOG2062|consensus
Probab=34.41 E-value=7.4e+02 Score=28.14 Aligned_cols=303 Identities=8% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607 336 SLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (677)
..|+..+|.+.+.--+-... ...+++.+|.++...|+- ..+++...++... +..+.+....-+--.|-=.
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~-~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAE-NEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhcc-chhhhhhhhhhccchhccc
Q ss_pred HHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 409 MSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 409 ~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 483 (677)
.-.+.|++.-..--.+ ..+-+.+|.+..-..+.+.-.+.+.-+-+..-+...--..+|..+...|+-++|..+.+
T Consensus 446 a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~ 525 (929)
T KOG2062|consen 446 ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIK 525 (929)
T ss_pred ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHH
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 484 ~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
+++.-...-....-.+.++..|. -.|+...-...+.-++.-..++..-.--.|.-+.-..+++.-.....-.
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~--------GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lL 597 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYV--------GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLL 597 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHh--------ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHH
Q ss_pred HHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh---HHHHHHHHHHHHcC
Q psy16607 564 LSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREG 640 (677)
Q Consensus 564 l~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g 640 (677)
.+...-.-...+-..+|.++. ..|. .+|+..++.... +|.+. .++..+|.+..++.
T Consensus 598 ses~N~HVRyGaA~ALGIaCA-------------------GtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACA-------------------GTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhc-------------------CCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcc
Q ss_pred -----CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 641 -----HIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 641 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
++..-++.|.+.+.-..++.-+.+.--...
T Consensus 657 ~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 657 EQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred cccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
No 482
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=34.37 E-value=95 Score=18.83 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q psy16607 627 LSQNNLAVLEARE----GHIERASTYLQAAAAS 655 (677)
Q Consensus 627 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 655 (677)
.+.+.+|.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4567777777642 3788888888888764
No 483
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=33.99 E-value=72 Score=24.26 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=12.7
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|+|++|..+|..+++
T Consensus 18 ~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 18 EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 67778888777777765
No 484
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.71 E-value=1e+02 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 630 NNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 630 ~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
...|.-+-..|++++|+.+|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555668888888888887766
No 485
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.51 E-value=61 Score=34.02 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcc
Q psy16607 122 YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDL 169 (677)
Q Consensus 122 ~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~ 169 (677)
+|...|..|+|-=|.++++++.--+|+|+.|..+.+.+|.+.+|..|.
T Consensus 458 la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 458 LAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 888999999999999999999999999999999999999999998774
No 486
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.09 E-value=2.5e+02 Score=30.94 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=60.3
Q ss_pred HcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q psy16607 336 SLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY 414 (677)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 414 (677)
+....+.+....+.-+.... .....+..+..+-..+..++|-.+|++.+..+|+ +.++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 44556666666665554433 5667778888888889999999999999999887 67788888888888888888877
Q ss_pred H
Q psy16607 415 K 415 (677)
Q Consensus 415 ~ 415 (677)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 487
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.86 E-value=93 Score=23.45 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=13.4
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|..+++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77888888888877765
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.37 E-value=5.1e+02 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
+++.++|..|.+.++.+.+.+.+.+.++..-
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~ 146 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAM 146 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4555555555555555555555555555443
No 489
>KOG0687|consensus
Probab=32.15 E-value=5.5e+02 Score=25.96 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC---C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT---C---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AE 460 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 460 (677)
-.+++...+..|++.|+-+.|.+.+++..+..-. . .-....+|..|....-..+.++-.+..++...+- -.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 3568899999999999999999998887664322 1 2233456666655554555555555555554331 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.-..-|..+....++.+|...|-.++.....
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 3334567777888999999999888765544
No 490
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.62 E-value=1e+02 Score=23.48 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 630 NNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 630 ~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
...|.-+-+.|++++|+.+|..+++.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444455678888888888887763
No 491
>PRK09687 putative lyase; Provisional
Probab=31.36 E-value=5.3e+02 Score=25.54 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 520 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..++..+-+.++... .....+.++...|.. +|+..+.+++.
T Consensus 222 ~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 222 KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 455555555554322 223444455555553 56666666665
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.10 E-value=6.2e+02 Score=26.31 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC------HHHHHHHHHHH--HHcCChHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFTD------IEAFIRMIRVY--IRLDQPIRAIDIGRN 382 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~--~~~g~~~~A~~~~~~ 382 (677)
...+..++..++|..|...|+++....++ ...+..+..+| ...-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566778888888888888888775431 22233333333 345556666666654
No 493
>KOG4151|consensus
Probab=30.89 E-value=1.6e+02 Score=33.08 Aligned_cols=45 Identities=11% Similarity=-0.156 Sum_probs=23.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 559 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 559 (677)
..+++.+++.-..-++...|....+++..+.+|...++++-|++.
T Consensus 105 ~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 105 GLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred CccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.04 E-value=4.6e+02 Score=24.42 Aligned_cols=67 Identities=6% Similarity=0.098 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHcCChhHHHHHHHHHHHhCc
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA-RIFEGLNNMPMSVKYYKLILKRDA 422 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p 422 (677)
+...+..+-..+...|+++.|-++|--++...+-+......+| .++.+.+.-....++++......|
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 4556677777778888999998888888877766666555555 345555554444455555554444
No 495
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=29.92 E-value=1.2e+02 Score=18.74 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=19.9
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHhC
Q psy16607 627 LSQNNLA--VLEAREG-----HIERASTYLQAAAASS 656 (677)
Q Consensus 627 ~~~~~la--~~~~~~g-----~~~~A~~~~~~al~~~ 656 (677)
++.+.+| .++..-. +.++|+.+|+++.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4667777 4444332 4788999998887653
No 496
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=28.72 E-value=88 Score=32.23 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHh
Q psy16607 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH------------IERASTYLQAAAAS 655 (677)
Q Consensus 608 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~ 655 (677)
...|+.++++|.. .++|+.|..+|.++..+|+ |.+|..++.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 5788888888876 4678889988888888775 56777777777554
No 497
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=28.61 E-value=2.9e+02 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKL 416 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~ 416 (677)
..++|..+...|+.+-.+++++-
T Consensus 53 CHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 53 CHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HhhHHHHHHHcCChHHHHHHHHH
Confidence 45666666666666666666543
No 498
>KOG0292|consensus
Probab=28.50 E-value=6.1e+02 Score=29.38 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=18.8
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCc
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACE 320 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p 320 (677)
|+-....|++.+|++.|+.++-.-|
T Consensus 998 gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 998 GYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHhhhccCcHHHHHHHHHHHHhhee
Confidence 3434556999999999999886554
No 499
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=28.05 E-value=92 Score=26.46 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=32.5
Q ss_pred CcccchHHHHHHHHhhh-----chhHHHHHHHHHhhhCccchhhHHHHhhhh
Q psy16607 9 TATVDSMFYAVDHFHKR-----NFEKCAAICTELLAKNPYDKAAWTLKMRSL 55 (677)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (677)
.+..|-|-.+++-|+-+ +.+.|..+|.++++.+|.|-.+-+.-.+++
T Consensus 69 ktk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 69 KTKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp ---HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 45678888888777644 567788999999999999999776655554
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=27.85 E-value=6.3e+02 Score=25.33 Aligned_cols=61 Identities=10% Similarity=-0.042 Sum_probs=42.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 542 NLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
.-+..+...+..++|+..++..+.....| +.......++.++. ..|.++-|...|....+
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~-------------------~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLE-------------------QAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHH
Confidence 34667778889999999998765522223 22344556667776 89999999999888765
Q ss_pred c
Q psy16607 621 I 621 (677)
Q Consensus 621 ~ 621 (677)
.
T Consensus 279 ~ 279 (301)
T TIGR03362 279 Q 279 (301)
T ss_pred H
Confidence 3
Done!