Query psy16607
Match_columns 677
No_of_seqs 1188 out of 3076
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 17:16:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-41 7.6E-46 356.4 49.3 345 299-675 43-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-39 2.1E-43 337.6 45.3 349 296-676 6-355 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.5E-37 5.3E-42 346.4 43.4 351 291-671 202-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 8.7E-35 3E-39 324.1 41.4 354 291-676 152-566 (597)
5 2gw1_A Mitochondrial precursor 100.0 3.6E-34 1.2E-38 312.7 41.3 282 357-670 186-493 (514)
6 3ieg_A DNAJ homolog subfamily 100.0 4E-33 1.4E-37 289.0 42.8 318 326-674 5-354 (359)
7 2y4t_A DNAJ homolog subfamily 100.0 3.2E-33 1.1E-37 300.0 41.6 336 305-672 8-375 (450)
8 2gw1_A Mitochondrial precursor 100.0 1.2E-33 3.9E-38 308.6 36.9 352 291-676 8-465 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 1.3E-32 4.3E-37 295.3 43.3 353 291-675 28-440 (450)
10 3fp2_A TPR repeat-containing p 100.0 4E-32 1.4E-36 298.4 39.3 262 372-665 217-501 (537)
11 3ieg_A DNAJ homolog subfamily 100.0 3E-31 1E-35 274.8 43.4 318 292-641 6-355 (359)
12 4g1t_A Interferon-induced prot 100.0 1.2E-31 4E-36 289.7 33.9 355 291-667 53-471 (472)
13 3hym_B Cell division cycle pro 100.0 2.5E-31 8.4E-36 272.3 32.6 292 356-676 21-321 (330)
14 3fp2_A TPR repeat-containing p 100.0 1.6E-31 5.6E-36 293.5 32.1 353 290-676 26-478 (537)
15 3hym_B Cell division cycle pro 100.0 2.3E-30 7.8E-35 265.1 31.4 287 326-643 24-322 (330)
16 1fch_A Peroxisomal targeting s 100.0 2.5E-30 8.6E-35 269.4 25.4 293 333-655 34-359 (368)
17 4g1t_A Interferon-induced prot 100.0 3.3E-28 1.1E-32 262.7 38.5 323 323-676 50-446 (472)
18 1fch_A Peroxisomal targeting s 100.0 2.5E-29 8.5E-34 261.9 25.6 279 366-676 34-346 (368)
19 4eqf_A PEX5-related protein; a 100.0 2.3E-28 7.8E-33 254.6 26.0 267 378-675 48-342 (365)
20 2h6f_A Protein farnesyltransfe 100.0 2.6E-28 8.7E-33 253.1 26.0 256 351-672 90-365 (382)
21 4eqf_A PEX5-related protein; a 100.0 1.7E-28 5.6E-33 255.6 23.3 269 357-654 65-355 (365)
22 3cv0_A Peroxisome targeting si 100.0 1.1E-27 3.7E-32 244.7 25.4 271 358-659 22-319 (327)
23 2h6f_A Protein farnesyltransfe 100.0 2.4E-27 8.3E-32 245.7 26.0 260 315-639 89-366 (382)
24 2xm6_A Protein corresponding t 100.0 2.3E-24 7.7E-29 233.8 49.0 331 291-672 41-411 (490)
25 3cv0_A Peroxisome targeting si 100.0 9.5E-27 3.3E-31 237.7 27.4 265 328-623 25-317 (327)
26 2xm6_A Protein corresponding t 100.0 2.6E-24 8.9E-29 233.3 45.3 331 291-670 77-450 (490)
27 3u4t_A TPR repeat-containing p 99.9 5.5E-26 1.9E-30 225.9 22.1 255 358-676 4-271 (272)
28 3uq3_A Heat shock protein STI1 99.9 3.6E-25 1.2E-29 217.6 25.9 241 390-670 4-257 (258)
29 3mkr_A Coatomer subunit epsilo 99.9 1.2E-24 4.2E-29 218.1 30.0 276 331-649 6-288 (291)
30 3u4t_A TPR repeat-containing p 99.9 2.6E-25 8.9E-30 221.0 24.5 256 327-640 6-269 (272)
31 2ooe_A Cleavage stimulation fa 99.9 1.5E-23 5.3E-28 229.6 40.8 343 300-675 23-478 (530)
32 3uq3_A Heat shock protein STI1 99.9 2.1E-24 7.1E-29 212.2 28.0 239 357-635 5-256 (258)
33 3sf4_A G-protein-signaling mod 99.9 5.5E-25 1.9E-29 231.9 24.9 294 356-676 8-363 (406)
34 2pl2_A Hypothetical conserved 99.9 4.8E-25 1.6E-29 211.2 21.9 200 422-653 2-212 (217)
35 3mkr_A Coatomer subunit epsilo 99.9 2.7E-24 9.4E-29 215.5 28.3 261 365-664 7-273 (291)
36 2pl2_A Hypothetical conserved 99.9 1.3E-24 4.4E-29 208.2 23.7 200 388-619 2-212 (217)
37 3sf4_A G-protein-signaling mod 99.9 1.3E-24 4.4E-29 229.1 22.5 295 323-644 8-365 (406)
38 2ooe_A Cleavage stimulation fa 99.9 1.3E-22 4.6E-27 222.1 38.6 330 312-676 2-441 (530)
39 4a1s_A PINS, partner of inscut 99.9 6.3E-24 2.1E-28 224.7 24.3 273 362-661 53-378 (411)
40 3e4b_A ALGK; tetratricopeptide 99.9 9.5E-24 3.2E-28 225.6 23.0 328 295-672 9-366 (452)
41 3ro2_A PINS homolog, G-protein 99.9 1.4E-23 4.7E-28 214.6 23.1 274 359-659 7-336 (338)
42 4a1s_A PINS, partner of inscut 99.9 7.1E-23 2.4E-27 216.5 25.2 270 328-624 52-375 (411)
43 2q7f_A YRRB protein; TPR, prot 99.9 6.4E-23 2.2E-27 199.7 21.7 219 425-674 23-241 (243)
44 1ouv_A Conserved hypothetical 99.9 1.3E-21 4.5E-26 194.5 31.7 234 387-663 2-259 (273)
45 3ro2_A PINS homolog, G-protein 99.9 1E-22 3.5E-27 208.1 23.2 270 328-624 9-335 (338)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.3E-22 4.5E-27 201.5 22.8 244 336-649 17-269 (275)
47 2q7f_A YRRB protein; TPR, prot 99.9 1.6E-22 5.5E-27 196.9 22.1 213 357-581 23-235 (243)
48 2ho1_A Type 4 fimbrial biogene 99.9 1.5E-21 5.3E-26 191.3 27.9 210 425-665 37-248 (252)
49 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.9E-23 2E-27 204.0 17.1 249 299-560 15-269 (275)
50 2vq2_A PILW, putative fimbrial 99.9 3.2E-21 1.1E-25 185.0 28.3 214 422-666 5-222 (225)
51 3vtx_A MAMA; tetratricopeptide 99.9 7.8E-22 2.7E-26 183.5 22.9 178 457-667 3-180 (184)
52 2ond_A Cleavage stimulation fa 99.9 1.6E-21 5.6E-26 197.5 26.9 255 374-668 33-305 (308)
53 1ouv_A Conserved hypothetical 99.9 1.1E-20 3.7E-25 187.8 32.3 228 356-626 5-256 (273)
54 2ho1_A Type 4 fimbrial biogene 99.9 3.3E-21 1.1E-25 188.9 27.5 209 391-630 37-247 (252)
55 2vq2_A PILW, putative fimbrial 99.9 7.2E-21 2.5E-25 182.5 28.4 215 387-632 4-222 (225)
56 4abn_A Tetratricopeptide repea 99.9 8.7E-22 3E-26 211.7 24.0 214 407-652 84-318 (474)
57 3vtx_A MAMA; tetratricopeptide 99.9 3.4E-21 1.2E-25 179.1 24.7 172 390-573 4-175 (184)
58 3ulq_A Response regulator aspa 99.9 3.7E-21 1.3E-25 201.5 26.7 237 394-658 106-371 (383)
59 4abn_A Tetratricopeptide repea 99.9 1.6E-21 5.6E-26 209.6 23.8 215 338-563 82-318 (474)
60 2ond_A Cleavage stimulation fa 99.9 1.8E-20 6E-25 189.9 28.7 223 408-661 33-276 (308)
61 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-20 3.8E-25 201.8 27.4 314 306-670 55-400 (452)
62 4i17_A Hypothetical protein; T 99.9 3.4E-20 1.1E-24 178.9 28.3 219 390-673 6-227 (228)
63 3ulq_A Response regulator aspa 99.9 9.8E-21 3.3E-25 198.2 24.8 294 298-623 21-370 (383)
64 4i17_A Hypothetical protein; T 99.9 6.5E-20 2.2E-24 176.9 25.3 217 356-637 6-225 (228)
65 3nf1_A KLC 1, kinesin light ch 99.9 4.8E-21 1.6E-25 193.7 17.5 251 387-658 23-310 (311)
66 4gyw_A UDP-N-acetylglucosamine 99.9 9.5E-21 3.3E-25 211.4 19.3 172 455-657 5-176 (723)
67 4gyw_A UDP-N-acetylglucosamine 99.8 2.9E-20 9.9E-25 207.5 22.1 169 387-565 5-173 (723)
68 1xi4_A Clathrin heavy chain; a 99.8 1.6E-18 5.3E-23 196.2 34.4 308 296-675 1056-1370(1630)
69 3dra_A Protein farnesyltransfe 99.8 1.1E-18 3.9E-23 173.4 28.4 230 408-668 50-301 (306)
70 3q15_A PSP28, response regulat 99.8 5E-19 1.7E-23 184.8 27.1 236 393-656 103-366 (378)
71 3nf1_A KLC 1, kinesin light ch 99.8 3.8E-20 1.3E-24 187.1 15.9 238 356-624 26-310 (311)
72 1xi4_A Clathrin heavy chain; a 99.8 8.4E-18 2.9E-22 190.3 35.4 309 301-672 1088-1413(1630)
73 3dra_A Protein farnesyltransfe 99.8 3.3E-18 1.1E-22 170.1 28.3 235 372-635 48-302 (306)
74 1b89_A Protein (clathrin heavy 99.8 1.4E-20 4.7E-25 192.5 9.7 309 300-671 14-339 (449)
75 1qqe_A Vesicular transport pro 99.8 4.6E-19 1.6E-23 177.9 20.0 222 406-670 32-284 (292)
76 3q15_A PSP28, response regulat 99.8 6.4E-18 2.2E-22 176.4 29.4 292 299-622 22-366 (378)
77 3qky_A Outer membrane assembly 99.8 9.2E-19 3.1E-23 172.6 20.7 199 419-646 9-252 (261)
78 1hz4_A MALT regulatory protein 99.8 8.7E-18 3E-22 175.0 28.3 298 329-660 19-354 (373)
79 1qqe_A Vesicular transport pro 99.8 1.6E-18 5.4E-23 174.0 21.3 248 307-583 3-284 (292)
80 1hz4_A MALT regulatory protein 99.8 9.7E-18 3.3E-22 174.6 28.0 272 357-657 14-324 (373)
81 2pzi_A Probable serine/threoni 99.8 1.4E-18 4.9E-23 195.0 23.0 184 385-584 388-579 (681)
82 2pzi_A Probable serine/threoni 99.8 1E-18 3.6E-23 196.1 20.0 188 419-641 388-583 (681)
83 3qky_A Outer membrane assembly 99.8 4.8E-18 1.6E-22 167.5 22.0 194 452-674 8-246 (261)
84 4ga2_A E3 SUMO-protein ligase 99.8 3.9E-19 1.3E-23 158.9 10.3 140 515-675 9-149 (150)
85 3urz_A Uncharacterized protein 99.8 4.9E-18 1.7E-22 161.1 18.1 166 359-535 6-189 (208)
86 1b89_A Protein (clathrin heavy 99.8 8.1E-19 2.8E-23 179.5 13.1 301 291-653 34-353 (449)
87 3as5_A MAMA; tetratricopeptide 99.8 2.2E-17 7.7E-22 152.6 21.7 169 324-492 8-177 (186)
88 3dss_A Geranylgeranyl transfer 99.8 2.5E-16 8.5E-21 157.2 29.9 241 409-669 48-318 (331)
89 3as5_A MAMA; tetratricopeptide 99.8 1.8E-17 6.2E-22 153.2 20.4 172 459-661 8-179 (186)
90 3edt_B KLC 2, kinesin light ch 99.8 5.5E-18 1.9E-22 168.3 17.6 231 403-656 13-282 (283)
91 3urz_A Uncharacterized protein 99.8 7.8E-18 2.7E-22 159.7 17.4 177 460-669 5-199 (208)
92 4ga2_A E3 SUMO-protein ligase 99.8 1.9E-18 6.5E-23 154.5 11.7 145 330-474 3-149 (150)
93 3edt_B KLC 2, kinesin light ch 99.8 4.9E-18 1.7E-22 168.8 15.9 227 337-565 14-280 (283)
94 3dss_A Geranylgeranyl transfer 99.7 1.1E-15 3.9E-20 152.5 29.9 246 369-636 41-319 (331)
95 4gco_A Protein STI-1; structur 99.7 2.8E-17 9.5E-22 141.9 14.4 121 529-670 5-125 (126)
96 3q7a_A Farnesyltransferase alp 99.7 5.4E-16 1.9E-20 155.3 24.8 245 393-668 56-345 (349)
97 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.8E-16 6.1E-21 152.3 20.0 208 390-661 3-219 (225)
98 4e6h_A MRNA 3'-END-processing 99.7 3.8E-14 1.3E-18 156.3 37.9 362 277-675 59-556 (679)
99 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.1E-16 1.8E-20 149.1 20.4 188 324-536 4-217 (225)
100 3q7a_A Farnesyltransferase alp 99.7 2.4E-15 8.3E-20 150.6 25.5 237 370-635 67-346 (349)
101 4gco_A Protein STI-1; structur 99.7 3.3E-16 1.1E-20 135.1 14.6 119 384-504 6-124 (126)
102 2ifu_A Gamma-SNAP; membrane fu 99.7 6.2E-16 2.1E-20 156.2 19.0 185 433-647 44-253 (307)
103 2r5s_A Uncharacterized protein 99.7 2.3E-16 7.8E-21 145.2 14.3 162 461-654 8-172 (176)
104 2ifu_A Gamma-SNAP; membrane fu 99.7 5.7E-16 1.9E-20 156.5 17.9 206 403-661 3-229 (307)
105 2r5s_A Uncharacterized protein 99.7 1.6E-16 5.4E-21 146.3 12.5 162 393-565 8-172 (176)
106 3qou_A Protein YBBN; thioredox 99.7 1.3E-15 4.3E-20 152.2 19.1 168 388-565 114-283 (287)
107 3qou_A Protein YBBN; thioredox 99.7 1.4E-15 4.8E-20 151.8 18.9 169 421-654 113-283 (287)
108 4f3v_A ESX-1 secretion system 99.7 4E-16 1.4E-20 151.1 13.5 207 430-667 12-248 (282)
109 2vsy_A XCC0866; transferase, g 99.7 1.1E-15 3.8E-20 168.5 18.2 165 472-667 2-169 (568)
110 3gyz_A Chaperone protein IPGC; 99.7 5.6E-16 1.9E-20 137.7 12.7 116 524-660 23-138 (151)
111 2vsy_A XCC0866; transferase, g 99.7 3.5E-15 1.2E-19 164.5 21.2 164 439-633 3-169 (568)
112 4e6h_A MRNA 3'-END-processing 99.6 3.3E-13 1.1E-17 148.8 36.0 339 307-675 50-519 (679)
113 4f3v_A ESX-1 secretion system 99.6 5.9E-16 2E-20 149.9 12.1 209 360-581 10-249 (282)
114 3gyz_A Chaperone protein IPGC; 99.6 3.1E-16 1.1E-20 139.4 9.0 115 378-492 23-137 (151)
115 3rjv_A Putative SEL1 repeat pr 99.6 2.2E-14 7.5E-19 136.2 22.1 186 443-669 4-209 (212)
116 3rjv_A Putative SEL1 repeat pr 99.6 2.5E-14 8.6E-19 135.8 21.3 175 375-565 4-196 (212)
117 2vgx_A Chaperone SYCD; alterna 99.6 1.3E-15 4.4E-20 135.6 11.4 125 524-669 8-132 (148)
118 1p5q_A FKBP52, FK506-binding p 99.6 7.5E-17 2.6E-21 164.9 0.9 200 404-655 78-294 (336)
119 1p5q_A FKBP52, FK506-binding p 99.6 2.7E-16 9.3E-21 160.7 4.3 199 337-565 78-293 (336)
120 2xcb_A PCRH, regulatory protei 99.6 3.9E-15 1.3E-19 131.5 10.4 128 524-672 5-132 (142)
121 2c2l_A CHIP, carboxy terminus 99.6 8.7E-15 3E-19 145.6 14.0 198 388-621 1-199 (281)
122 2fo7_A Synthetic consensus TPR 99.6 1E-13 3.4E-18 120.2 18.8 134 358-491 2-135 (136)
123 2c2l_A CHIP, carboxy terminus 99.6 5.5E-15 1.9E-19 147.0 11.6 199 422-656 1-200 (281)
124 2vgx_A Chaperone SYCD; alterna 99.6 1.4E-14 4.7E-19 128.9 12.1 115 378-492 8-122 (148)
125 2fo7_A Synthetic consensus TPR 99.6 1.4E-13 4.8E-18 119.3 18.3 135 496-659 2-136 (136)
126 3upv_A Heat shock protein STI1 99.6 6.2E-14 2.1E-18 120.8 15.1 119 534-673 1-125 (126)
127 1dce_A Protein (RAB geranylger 99.6 8.4E-15 2.9E-19 159.5 11.8 203 439-658 43-270 (567)
128 3mv2_B Coatomer subunit epsilo 99.6 4.9E-13 1.7E-17 131.2 22.7 251 331-629 20-290 (310)
129 1dce_A Protein (RAB geranylger 99.5 1.6E-13 5.5E-18 149.4 20.8 174 471-675 40-241 (567)
130 3mv2_B Coatomer subunit epsilo 99.5 3.5E-13 1.2E-17 132.3 20.4 248 299-576 23-290 (310)
131 2vyi_A SGTA protein; chaperone 99.5 1.4E-13 4.8E-18 118.7 15.6 125 532-677 7-131 (131)
132 2lni_A Stress-induced-phosphop 99.5 1.6E-13 5.5E-18 119.0 15.3 122 533-675 12-133 (133)
133 2xcb_A PCRH, regulatory protei 99.5 5.4E-14 1.8E-18 124.1 12.3 115 378-492 5-119 (142)
134 2e2e_A Formate-dependent nitri 99.5 7.7E-14 2.6E-18 128.2 13.5 134 513-667 20-156 (177)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.6E-13 1.6E-17 127.0 18.9 145 495-671 6-166 (213)
136 3sz7_A HSC70 cochaperone (SGT) 99.5 1.6E-13 5.6E-18 124.3 14.6 118 533-671 7-124 (164)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.5 5.5E-13 1.9E-17 126.4 18.5 131 326-458 8-154 (213)
138 1a17_A Serine/threonine protei 99.5 7.3E-13 2.5E-17 119.8 18.0 133 357-489 13-147 (166)
139 3upv_A Heat shock protein STI1 99.5 5.6E-13 1.9E-17 114.7 15.9 114 390-505 3-122 (126)
140 2fbn_A 70 kDa peptidylprolyl i 99.5 5.1E-14 1.7E-18 132.1 9.5 161 463-654 8-185 (198)
141 2e2e_A Formate-dependent nitri 99.5 3.2E-13 1.1E-17 124.1 13.9 125 368-492 21-148 (177)
142 2qfc_A PLCR protein; TPR, HTH, 99.5 1.5E-12 5E-17 130.4 19.6 170 460-656 76-267 (293)
143 1na0_A Designed protein CTPR3; 99.5 1.7E-12 5.7E-17 110.8 16.9 121 533-674 4-125 (125)
144 2qfc_A PLCR protein; TPR, HTH, 99.5 3.3E-12 1.1E-16 127.8 21.6 169 391-567 75-267 (293)
145 1a17_A Serine/threonine protei 99.5 1.7E-12 6E-17 117.3 17.5 133 495-656 13-147 (166)
146 2hr2_A Hypothetical protein; a 99.5 2E-13 6.7E-18 119.6 10.1 111 537-668 11-144 (159)
147 2fbn_A 70 kDa peptidylprolyl i 99.5 1.1E-13 3.9E-18 129.7 9.2 148 400-557 13-176 (198)
148 4gcn_A Protein STI-1; structur 99.5 5.5E-13 1.9E-17 115.0 12.4 110 536-667 7-123 (127)
149 3sz7_A HSC70 cochaperone (SGT) 99.4 1.3E-12 4.4E-17 118.3 15.0 115 388-504 8-122 (164)
150 2vyi_A SGTA protein; chaperone 99.4 3.2E-12 1.1E-16 110.1 16.4 120 356-475 11-130 (131)
151 3u3w_A Transcriptional activat 99.4 3E-12 1E-16 128.1 18.5 166 464-656 80-267 (293)
152 2lni_A Stress-induced-phosphop 99.4 2.7E-12 9.2E-17 111.1 15.8 116 389-506 14-129 (133)
153 3rkv_A Putative peptidylprolyl 99.4 1.6E-12 5.4E-17 117.5 14.6 119 536-673 10-145 (162)
154 1hxi_A PEX5, peroxisome target 99.4 7.7E-13 2.6E-17 112.9 11.7 102 539-661 19-120 (121)
155 3u3w_A Transcriptional activat 99.4 5.6E-12 1.9E-16 126.1 19.8 164 396-567 80-267 (293)
156 4gcn_A Protein STI-1; structur 99.4 1.6E-12 5.6E-17 111.9 13.4 100 392-491 9-115 (127)
157 3q49_B STIP1 homology and U bo 99.4 2.5E-12 8.5E-17 112.3 14.7 120 532-672 4-128 (137)
158 1elw_A TPR1-domain of HOP; HOP 99.4 4.1E-12 1.4E-16 107.2 15.6 115 536-671 3-117 (118)
159 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.9E-13 9.8E-18 144.4 9.0 151 472-653 247-413 (457)
160 2dba_A Smooth muscle cell asso 99.4 5.6E-12 1.9E-16 111.4 16.0 121 532-673 23-146 (148)
161 2hr2_A Hypothetical protein; a 99.4 2.3E-12 7.8E-17 112.9 12.8 101 392-492 12-135 (159)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 3.2E-13 1.1E-17 144.0 8.9 161 369-558 246-406 (457)
163 2uy1_A Cleavage stimulation fa 99.4 2.7E-10 9.1E-15 122.1 31.0 322 302-654 27-412 (493)
164 1na0_A Designed protein CTPR3; 99.4 1.8E-11 6.1E-16 104.3 17.4 116 357-472 9-124 (125)
165 3q49_B STIP1 homology and U bo 99.4 1.1E-11 3.7E-16 108.1 16.2 106 386-491 4-109 (137)
166 1hxi_A PEX5, peroxisome target 99.4 2.7E-12 9.4E-17 109.5 11.6 98 394-491 20-117 (121)
167 1elw_A TPR1-domain of HOP; HOP 99.4 2.2E-11 7.4E-16 102.6 16.8 111 358-468 5-115 (118)
168 3rkv_A Putative peptidylprolyl 99.4 5E-12 1.7E-16 114.1 12.9 114 358-471 12-144 (162)
169 3gw4_A Uncharacterized protein 99.4 1.5E-11 5E-16 115.3 16.4 118 336-453 4-135 (203)
170 3gw4_A Uncharacterized protein 99.4 1.2E-11 4E-16 116.0 15.6 126 515-659 38-180 (203)
171 2xev_A YBGF; tetratricopeptide 99.4 1.4E-11 4.6E-16 106.2 14.6 116 538-674 3-124 (129)
172 1elr_A TPR2A-domain of HOP; HO 99.3 1.3E-11 4.4E-16 106.3 12.6 119 535-675 2-127 (131)
173 2kck_A TPR repeat; tetratricop 99.3 5.9E-12 2E-16 105.1 10.0 107 533-660 2-111 (112)
174 2if4_A ATFKBP42; FKBP-like, al 99.3 3.4E-12 1.2E-16 130.3 10.1 138 495-661 179-334 (338)
175 1zu2_A Mitochondrial import re 99.3 4.8E-12 1.6E-16 110.5 9.4 100 549-669 14-134 (158)
176 2xev_A YBGF; tetratricopeptide 99.3 3.7E-11 1.3E-15 103.5 15.0 105 360-464 5-115 (129)
177 2dba_A Smooth muscle cell asso 99.3 5.8E-11 2E-15 104.8 16.1 115 388-504 25-142 (148)
178 2kck_A TPR repeat; tetratricop 99.3 1.3E-11 4.5E-16 102.9 10.9 106 387-492 2-110 (112)
179 3k9i_A BH0479 protein; putativ 99.3 8.8E-12 3E-16 105.6 9.7 103 550-673 3-108 (117)
180 1zu2_A Mitochondrial import re 99.3 5.1E-12 1.8E-16 110.3 8.0 111 515-667 14-145 (158)
181 4b4t_Q 26S proteasome regulato 99.3 4.8E-10 1.6E-14 118.7 24.8 165 394-566 58-245 (434)
182 2if4_A ATFKBP42; FKBP-like, al 99.3 7.7E-12 2.6E-16 127.6 9.8 153 324-492 179-332 (338)
183 1wao_1 Serine/threonine protei 99.3 1.7E-12 5.7E-17 139.0 4.3 134 359-492 8-154 (477)
184 2uy1_A Cleavage stimulation fa 99.3 2.4E-09 8.3E-14 114.6 28.7 319 302-674 7-368 (493)
185 1elr_A TPR2A-domain of HOP; HO 99.3 7E-11 2.4E-15 101.6 13.7 113 358-471 5-124 (131)
186 1wao_1 Serine/threonine protei 99.3 8.8E-12 3E-16 133.4 9.4 126 514-660 17-155 (477)
187 4b4t_Q 26S proteasome regulato 99.3 1.6E-10 5.4E-15 122.4 19.1 219 393-655 6-245 (434)
188 1ihg_A Cyclophilin 40; ppiase 99.2 7.2E-11 2.5E-15 121.7 14.9 137 327-480 226-362 (370)
189 1ihg_A Cyclophilin 40; ppiase 99.2 1.2E-10 4.1E-15 120.1 15.1 122 495-645 223-360 (370)
190 3k9i_A BH0479 protein; putativ 99.2 1.7E-11 5.8E-16 103.8 7.3 90 371-460 4-96 (117)
191 3ro3_A PINS homolog, G-protein 99.2 1.5E-10 5.1E-15 103.5 13.5 132 359-490 11-160 (164)
192 3ro3_A PINS homolog, G-protein 99.2 2.3E-10 7.7E-15 102.3 13.1 138 495-659 9-162 (164)
193 1na3_A Designed protein CTPR2; 99.1 1.2E-09 4E-14 87.3 11.8 86 570-674 6-91 (91)
194 2l6j_A TPR repeat-containing p 99.0 2.2E-09 7.5E-14 89.3 11.6 86 572-676 3-94 (111)
195 2kat_A Uncharacterized protein 99.0 2.2E-09 7.5E-14 90.2 11.0 84 409-492 3-86 (115)
196 2kat_A Uncharacterized protein 99.0 3E-09 1E-13 89.4 11.5 99 555-674 3-103 (115)
197 2l6j_A TPR repeat-containing p 99.0 2.8E-10 9.7E-15 94.8 4.6 95 536-651 3-103 (111)
198 1na3_A Designed protein CTPR2; 98.9 7.9E-09 2.7E-13 82.3 11.7 83 390-472 8-90 (91)
199 3ma5_A Tetratricopeptide repea 98.9 5.3E-09 1.8E-13 85.4 10.3 90 568-676 2-93 (100)
200 1klx_A Cysteine rich protein B 98.9 3.1E-08 1.1E-12 86.2 14.6 121 517-668 9-137 (138)
201 3ma5_A Tetratricopeptide repea 98.8 2.9E-08 1E-12 80.9 10.7 71 421-491 3-73 (100)
202 2kc7_A BFR218_protein; tetratr 98.8 7E-09 2.4E-13 84.3 6.8 91 541-660 4-95 (99)
203 2kc7_A BFR218_protein; tetratr 98.8 1.8E-08 6.1E-13 81.9 7.8 88 396-491 5-93 (99)
204 1klx_A Cysteine rich protein B 98.8 2E-07 6.7E-12 81.1 14.8 109 372-488 10-126 (138)
205 3n71_A Histone lysine methyltr 98.7 1.6E-07 5.4E-12 99.6 15.3 123 515-656 321-465 (490)
206 3ly7_A Transcriptional activat 98.7 3.9E-07 1.3E-11 90.9 16.9 125 517-661 213-345 (372)
207 3n71_A Histone lysine methyltr 98.7 9.4E-08 3.2E-12 101.4 12.9 126 364-489 316-465 (490)
208 3u64_A Protein TP_0956; tetrat 98.6 1.2E-06 4.1E-11 83.6 17.9 108 531-659 146-273 (301)
209 3ly7_A Transcriptional activat 98.6 5.8E-07 2E-11 89.6 15.9 135 356-491 195-342 (372)
210 3u64_A Protein TP_0956; tetrat 98.6 6.7E-07 2.3E-11 85.3 13.8 115 488-625 147-273 (301)
211 4g26_A Pentatricopeptide repea 98.6 1.1E-05 3.8E-10 86.2 24.9 169 299-467 36-218 (501)
212 4g26_A Pentatricopeptide repea 98.5 3.1E-05 1E-09 82.7 25.2 168 395-573 30-211 (501)
213 1pc2_A Mitochondria fission pr 98.5 1.6E-06 5.3E-11 74.7 11.7 97 553-670 14-115 (152)
214 1pc2_A Mitochondria fission pr 98.4 3.1E-06 1.1E-10 72.9 12.8 100 515-635 10-114 (152)
215 3bee_A Putative YFRE protein; 98.4 2.2E-06 7.6E-11 68.2 10.1 70 388-457 3-75 (93)
216 3bee_A Putative YFRE protein; 98.3 3.2E-06 1.1E-10 67.3 10.0 72 421-492 2-76 (93)
217 2v5f_A Prolyl 4-hydroxylase su 98.3 7.4E-06 2.5E-10 66.9 11.5 80 536-634 4-88 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 7.2E-06 2.5E-10 67.0 11.3 79 573-670 5-90 (104)
219 3qww_A SET and MYND domain-con 98.2 7.2E-06 2.5E-10 85.4 12.1 97 549-664 310-425 (433)
220 3qwp_A SET and MYND domain-con 98.1 1.7E-05 6E-10 82.7 13.3 111 544-673 294-426 (429)
221 3qww_A SET and MYND domain-con 98.1 2.1E-05 7.1E-10 82.0 12.2 96 515-629 310-424 (433)
222 3qwp_A SET and MYND domain-con 98.0 1.7E-05 5.8E-10 82.8 11.2 86 368-453 298-399 (429)
223 4h7y_A Dual specificity protei 97.8 0.00012 4.1E-09 61.7 10.2 122 531-674 7-141 (161)
224 1nzn_A CGI-135 protein, fissio 97.8 0.00029 1E-08 58.2 12.2 98 552-670 16-118 (126)
225 1nzn_A CGI-135 protein, fissio 97.8 0.0004 1.4E-08 57.4 12.1 97 518-635 16-117 (126)
226 4h7y_A Dual specificity protei 97.7 0.0009 3.1E-08 56.5 13.0 106 386-492 8-127 (161)
227 3ffl_A Anaphase-promoting comp 97.2 0.0031 1E-07 54.6 11.0 134 357-505 20-165 (167)
228 3ffl_A Anaphase-promoting comp 97.1 0.0017 5.7E-08 56.2 8.8 58 328-385 24-91 (167)
229 3o48_A Mitochondria fission 1 96.9 0.012 4.2E-07 48.7 11.5 80 321-400 37-121 (134)
230 1y8m_A FIS1; mitochondria, unk 96.8 0.021 7.1E-07 47.9 12.4 73 323-395 38-115 (144)
231 1y8m_A FIS1; mitochondria, unk 96.8 0.056 1.9E-06 45.4 14.6 78 534-632 36-117 (144)
232 3o48_A Mitochondria fission 1 96.7 0.021 7.3E-07 47.2 11.7 76 355-430 38-117 (134)
233 3mkq_A Coatomer beta'-subunit; 96.7 0.14 4.7E-06 58.1 22.8 45 436-485 663-707 (814)
234 1qsa_A Protein (soluble lytic 96.5 1.3 4.5E-05 47.8 27.8 249 367-654 82-347 (618)
235 3txn_A 26S proteasome regulato 96.4 0.52 1.8E-05 47.7 21.9 95 429-531 103-209 (394)
236 3txn_A 26S proteasome regulato 96.2 0.2 6.9E-06 50.7 17.9 116 541-675 103-235 (394)
237 4gns_B Protein CSD3, chitin bi 96.0 0.032 1.1E-06 61.4 11.5 112 340-451 265-397 (754)
238 4gns_B Protein CSD3, chitin bi 96.0 0.081 2.8E-06 58.3 14.5 126 290-417 250-397 (754)
239 3mkq_A Coatomer beta'-subunit; 95.8 0.43 1.5E-05 53.9 20.4 75 328-417 633-707 (814)
240 3mkq_B Coatomer subunit alpha; 94.8 0.45 1.5E-05 41.9 12.5 100 368-485 16-115 (177)
241 3spa_A Mtrpol, DNA-directed RN 94.8 0.3 1E-05 55.1 14.0 101 462-573 130-237 (1134)
242 1qsa_A Protein (soluble lytic 94.8 5.6 0.00019 42.9 31.7 323 302-651 85-438 (618)
243 3spa_A Mtrpol, DNA-directed RN 94.7 0.27 9.1E-06 55.5 13.4 91 297-387 135-231 (1134)
244 3kae_A CDC27, possible protein 94.6 0.58 2E-05 40.1 11.9 103 534-662 30-150 (242)
245 3mkq_B Coatomer subunit alpha; 94.3 0.98 3.3E-05 39.7 13.4 44 437-485 17-60 (177)
246 1zbp_A Hypothetical protein VP 94.3 1.4 4.8E-05 41.4 15.2 118 514-659 8-133 (273)
247 4b4t_S RPN3, 26S proteasome re 94.0 0.25 8.4E-06 51.4 10.6 142 515-677 148-328 (523)
248 3kae_A CDC27, possible protein 93.9 2.8 9.5E-05 36.0 17.3 160 291-457 35-240 (242)
249 2ff4_A Probable regulatory pro 93.6 0.87 3E-05 46.3 13.9 61 427-487 173-233 (388)
250 1ya0_A SMG-7 transcript varian 93.3 0.38 1.3E-05 50.4 10.7 79 575-672 154-232 (497)
251 4ady_A RPN2, 26S proteasome re 93.3 5.8 0.0002 44.7 20.5 23 122-144 236-258 (963)
252 2ff4_A Probable regulatory pro 92.9 1.3 4.5E-05 45.0 14.0 93 361-453 119-233 (388)
253 4fhn_B Nucleoporin NUP120; pro 92.9 6.6 0.00022 46.2 21.6 123 430-564 817-965 (1139)
254 4fhn_B Nucleoporin NUP120; pro 92.8 1.8 6.2E-05 51.0 16.8 120 362-485 817-964 (1139)
255 4b4t_P 26S proteasome regulato 92.8 9.8 0.00033 39.3 20.6 186 302-489 29-248 (445)
256 4b4t_P 26S proteasome regulato 92.8 10 0.00034 39.2 22.6 184 338-531 30-246 (445)
257 1zbp_A Hypothetical protein VP 92.5 5 0.00017 37.7 15.8 59 434-492 6-64 (273)
258 1ya0_A SMG-7 transcript varian 92.0 0.74 2.5E-05 48.2 10.7 75 395-469 156-230 (497)
259 4ady_A RPN2, 26S proteasome re 91.2 23 0.00079 39.9 28.1 124 429-565 380-518 (963)
260 4b4t_S RPN3, 26S proteasome re 90.2 1.3 4.6E-05 46.0 10.3 62 393-456 233-301 (523)
261 4b4t_R RPN7, 26S proteasome re 89.2 1.4 4.8E-05 45.5 9.8 103 537-658 131-240 (429)
262 4b4t_R RPN7, 26S proteasome re 88.7 2.2 7.5E-05 44.0 10.9 59 328-386 135-197 (429)
263 3lpz_A GET4 (YOR164C homolog); 72.7 73 0.0025 31.0 28.1 26 423-448 134-159 (336)
264 3lpz_A GET4 (YOR164C homolog); 72.3 75 0.0026 31.0 29.9 82 456-565 133-215 (336)
265 3lvg_A Clathrin heavy chain 1; 71.4 0.0004 1.4E-08 70.6 -23.7 226 295-560 60-285 (624)
266 3lvg_A Clathrin heavy chain 1; 71.0 2.1E-05 7.1E-10 79.7 -32.9 217 328-584 58-274 (624)
267 3esl_A Checkpoint serine/threo 66.4 33 0.0011 30.6 9.2 53 605-657 92-146 (202)
268 1wy6_A Hypothetical protein ST 66.1 56 0.0019 27.1 11.9 54 603-656 102-155 (172)
269 4gq2_M Nucleoporin NUP120; bet 65.0 51 0.0018 37.7 13.2 52 363-418 816-867 (950)
270 3esl_A Checkpoint serine/threo 64.5 40 0.0014 30.0 9.4 68 494-570 79-148 (202)
271 3t5v_B Nuclear mRNA export pro 62.6 17 0.00059 37.3 7.8 77 601-677 185-282 (455)
272 3t5x_A PCI domain-containing p 61.1 16 0.00056 32.8 6.5 51 627-677 15-70 (203)
273 4gq2_M Nucleoporin NUP120; bet 59.9 44 0.0015 38.3 11.3 48 627-674 898-950 (950)
274 2cfu_A SDSA1; SDS-hydrolase, l 56.3 11 0.00038 41.1 5.3 48 122-169 455-502 (658)
275 2yhe_A SEC-alkyl sulfatase; hy 60.0 2.5 8.6E-05 46.1 0.0 52 117-168 461-513 (668)
276 2w2u_A Hypothetical P60 katani 54.5 18 0.00063 27.0 4.7 17 604-620 31-47 (83)
277 2qx5_A Nucleoporin NIC96; mRNA 54.2 2.4E+02 0.0081 30.5 16.2 21 122-142 158-178 (661)
278 3mkr_B Coatomer subunit alpha; 53.7 1E+02 0.0035 29.6 10.9 30 13-42 104-133 (320)
279 2v6y_A AAA family ATPase, P60 53.0 20 0.00068 26.8 4.7 17 604-620 23-39 (83)
280 2cfu_A SDSA1; SDS-hydrolase, l 52.7 10 0.00034 41.4 4.3 49 15-63 453-501 (658)
281 4a1g_A Mitotic checkpoint seri 51.7 1.1E+02 0.0037 25.8 10.1 51 554-623 82-132 (152)
282 2wpv_A GET4, UPF0363 protein Y 50.9 1.8E+02 0.006 28.0 28.3 27 457-483 132-158 (312)
283 1wy6_A Hypothetical protein ST 48.0 1.2E+02 0.0041 25.2 11.8 123 364-490 14-156 (172)
284 3ubw_A 14-3-3E, 14-3-3 protein 47.4 1.8E+02 0.0061 27.0 16.5 46 609-654 173-227 (261)
285 2wvi_A Mitotic checkpoint seri 45.7 49 0.0017 28.4 6.6 62 537-623 66-127 (164)
286 3mv2_A Coatomer subunit alpha; 45.2 49 0.0017 31.9 7.2 30 13-42 116-145 (325)
287 3ax2_A Mitochondrial import re 44.3 57 0.0019 23.6 5.7 34 630-663 21-54 (73)
288 2wvi_A Mitotic checkpoint seri 43.8 1.4E+02 0.0046 25.6 9.1 49 444-492 79-129 (164)
289 2npm_A 14-3-3 domain containin 42.9 2.1E+02 0.0072 26.6 16.9 46 609-654 173-226 (260)
290 2qx5_A Nucleoporin NIC96; mRNA 41.6 3.4E+02 0.012 29.3 13.9 76 296-383 301-382 (661)
291 3ax2_A Mitochondrial import re 41.0 62 0.0021 23.4 5.5 30 463-492 21-50 (73)
292 3uzd_A 14-3-3 protein gamma; s 40.7 2.2E+02 0.0075 26.2 16.9 46 609-654 148-202 (248)
293 1wfd_A Hypothetical protein 15 40.4 36 0.0012 26.0 4.5 17 604-620 27-43 (93)
294 2br9_A 14-3-3E, 14-3-3 protein 39.6 2.2E+02 0.0076 25.9 15.6 46 609-654 147-201 (234)
295 2crb_A Nuclear receptor bindin 37.1 54 0.0019 24.8 4.7 28 627-654 16-43 (97)
296 2crb_A Nuclear receptor bindin 36.9 55 0.0019 24.8 4.7 27 539-565 17-43 (97)
297 2v6x_A Vacuolar protein sortin 36.5 46 0.0016 24.8 4.5 17 604-620 25-41 (85)
298 4aez_C MAD3, mitotic spindle c 36.0 50 0.0017 29.9 5.4 73 523-620 97-178 (223)
299 2vkj_A TM1634; membrane protei 35.7 1.1E+02 0.0036 23.0 5.9 47 537-583 53-100 (106)
300 2cpt_A SKD1 protein, vacuolar 34.3 41 0.0014 27.1 4.1 17 604-620 30-46 (117)
301 2ynq_A ESSB; membrane protein, 34.1 75 0.0026 26.9 5.7 29 590-618 71-99 (161)
302 4a5x_A MITD1, MIT domain-conta 33.9 53 0.0018 24.7 4.4 17 604-620 28-44 (86)
303 3iqu_A 14-3-3 protein sigma; s 33.2 2.8E+02 0.0097 25.3 18.7 46 609-654 150-204 (236)
304 2yhe_A SEC-alkyl sulfatase; hy 39.4 9 0.00031 41.7 0.0 49 15-63 465-513 (668)
305 3t5v_B Nuclear mRNA export pro 32.7 1.2E+02 0.0042 31.0 8.3 64 361-424 180-254 (455)
306 2ijq_A Hypothetical protein; s 32.1 1.9E+02 0.0065 24.6 8.1 60 429-488 36-104 (161)
307 1om2_A Protein (mitochondrial 31.7 66 0.0022 24.7 4.6 29 328-356 24-52 (95)
308 1om2_A Protein (mitochondrial 29.2 92 0.0032 23.8 5.0 30 463-492 24-53 (95)
309 2cwy_A Hypothetical protein TT 26.8 79 0.0027 24.2 4.4 43 13-55 3-46 (94)
310 2w2u_A Hypothetical P60 katani 26.2 83 0.0029 23.4 4.3 21 634-654 27-47 (83)
311 2cwy_A Hypothetical protein TT 25.7 2.2E+02 0.0075 21.6 6.8 27 329-355 6-32 (94)
312 2wpv_A GET4, UPF0363 protein Y 25.4 4.5E+02 0.015 25.1 26.4 27 423-449 132-158 (312)
313 2v6y_A AAA family ATPase, P60 24.3 94 0.0032 23.1 4.3 20 635-654 20-39 (83)
314 3t5x_A PCI domain-containing p 24.3 1.4E+02 0.0047 26.6 6.3 31 393-423 16-46 (203)
315 3mv2_A Coatomer subunit alpha; 23.6 5E+02 0.017 25.0 10.8 22 122-143 34-55 (325)
316 2ijq_A Hypothetical protein; s 23.4 3.4E+02 0.012 23.0 8.4 27 328-354 36-62 (161)
317 2cpt_A SKD1 protein, vacuolar 22.8 38 0.0013 27.3 1.9 43 13-55 20-72 (117)
318 2rpa_A Katanin P60 ATPase-cont 22.0 92 0.0031 22.9 3.7 25 395-419 16-40 (78)
319 2rpa_A Katanin P60 ATPase-cont 21.3 90 0.0031 22.9 3.5 25 361-385 16-40 (78)
320 3bu8_A Telomeric repeat-bindin 21.1 3.5E+02 0.012 24.2 7.8 64 340-403 88-160 (235)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-41 Score=356.37 Aligned_cols=345 Identities=17% Similarity=0.192 Sum_probs=332.3
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI 377 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 377 (677)
+...|++++|+..++.+++..|. ....+..+|.++...|++++|+..|+++++..| +..++..+|.++...|++++|+
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 121 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 34468888999999999999854 455558999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.
T Consensus 122 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA 537 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 537 (677)
+..++..+|.++...|++++|+..|++++..+|++ ..++..+|.++. ..|++++|+..|+++++.+|.++
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~p~~~ 271 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYY--------EQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTCSSCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCCCCH
Confidence 99999999999999999999999999999999998 999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL 617 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~ 617 (677)
.++..+|.++...|++++|+.+|+++++ ..|.+..++..++.++. ..|++++|+..|++
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR-------------------EQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------TTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHH-------------------HcCCHHHHHHHHHH
Confidence 9999999999999999999999999999 88999999999999999 99999999999999
Q ss_pred HHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 618 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
+++..|++..++..+|.++...|++++|+..|+++++++|++..+++++|.++..+|+
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999998875
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.3e-39 Score=337.62 Aligned_cols=349 Identities=20% Similarity=0.177 Sum_probs=337.1
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI 374 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 374 (677)
+..+++.|++++|+..+.++++..|.+. ..+..+|.++...|++++|+..++++++.+| +..++..+|.++...|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNT-GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 3446678999999999999999996554 4447999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
+|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
.|.+..++..+|.++...|++++|+..|++++..+|+. ..++..+|.++. ..|++++|+..|++++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLK--------EARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------TTTCTTHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999998 999999999998 99999999999999999999
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~ 614 (677)
+++.++..+|.++...|++++|+..|+++++ .+|+++.++..+|.++. ..|++++|+..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~g~~~~A~~~ 293 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALK-------------------EKGSVAEAEDC 293 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHH-------------------HHSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHH
Confidence 9999999999999999999999999999999 89999999999999999 99999999999
Q ss_pred HHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 615 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
|+++++..|.++.++..+|.++...|++++|+..|+++++++|++..+++++|.++...|++
T Consensus 294 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-37 Score=346.36 Aligned_cols=351 Identities=14% Similarity=0.090 Sum_probs=326.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHH--------------------------------------HH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQL--------------------------------------GK 332 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~l--------------------------------------a~ 332 (677)
....++.+|.+.|++++|+..|+++++..|.....+ ..+ +.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF-DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH-HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 445667778889999999999999999886433332 333 33
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16607 333 CYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVK 412 (677)
Q Consensus 333 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (677)
.+.+.|++++|+..|+++++..++..++..++.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 44567899999999999998856999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 413 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 413 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
.++++++..|.+..++..++.+|...|++++|+++|+++++..|.+..+|..++.+|...|++++|+..|++++...|++
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh----h
Q psy16607 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA----L 568 (677)
Q Consensus 493 ~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~ 568 (677)
..++..++.++. ..|++++|+..|+++++..|.++.+|..+|.++.+.|++++|+.+|+++++.. .
T Consensus 441 --~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 441 --HLPYLFLGMQHM--------QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp --SHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred --hHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 899999999998 99999999999999999999999999999999999999999999999999842 2
Q ss_pred ccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy16607 569 NENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 647 (677)
Q Consensus 569 ~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 647 (677)
+|+. ..+|..++.++. ..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+.
T Consensus 511 ~p~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYR-------------------KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp CSGGGHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhhHHHHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 5664 789999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 648 YLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 648 ~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
+|+++++++|+++.++..++.+|.
T Consensus 572 ~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 572 HLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999998874
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-35 Score=324.14 Aligned_cols=354 Identities=14% Similarity=0.063 Sum_probs=323.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhC---------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKAC---------------EFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT 355 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~---------------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 355 (677)
....++.+|...|++++|+.+|++..... .+.+...++.+|.++.+.|++++|+..|+++++.+|
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33456677888999999999999643221 011345568999999999999999999999999998
Q ss_pred -CHHHHHHHHH--------------------------------------HHHHcCChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16607 356 -DIEAFIRMIR--------------------------------------VYIRLDQPIRAIDIGRNALDCYPNEVTIMTE 396 (677)
Q Consensus 356 -~~~~~~~la~--------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 396 (677)
+..++..++. .|.+.|++++|+..|+++++. |.+..++..
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 310 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLC 310 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHH
Confidence 6776665543 344678899999999999887 778999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q psy16607 397 MARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 476 (677)
Q Consensus 397 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 476 (677)
++.++.+.|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|+++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHH
Q psy16607 477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 556 (677)
Q Consensus 477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 556 (677)
+|+.+|+++++..|.+ ..+|..++.++. ..|++++|+..|+++++..|.+..++..+|.++...|++++|
T Consensus 391 ~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQF--GPAWIGFAHSFA--------IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998 999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc------CCCC-hHHH
Q psy16607 557 VTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSH-GLSQ 629 (677)
Q Consensus 557 ~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~------~p~~-~~~~ 629 (677)
+.+|+++++ ..|.++.+|..++.++. ..|++++|+..|+++++. +|++ ..+|
T Consensus 461 ~~~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 461 NEYLQSSYA--LFQYDPLLLNELGVVAF-------------------NKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 999999999 88999999999999999 999999999999999988 5654 6899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 630 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
..+|.++...|++++|+..|+++++++|++..++..++.++...|+.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999974
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-34 Score=312.66 Aligned_cols=282 Identities=11% Similarity=0.045 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----c--C-------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIR---LDQPIRAIDIGRNALD-----C--Y-------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419 (677)
Q Consensus 357 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 419 (677)
...++.+|.++.. .|++++|+..|+++++ . . |.+..++..+|.++...|++++|+..|++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7788888988887 8999999999999999 5 3 45567899999999999999999999999999
Q ss_pred hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH
Q psy16607 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 499 (677)
Q Consensus 420 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 499 (677)
.+|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|.+ ..++.
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~ 342 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYI 342 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH-----
Q psy16607 500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD----- 574 (677)
Q Consensus 500 ~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~----- 574 (677)
.+|.++. ..|++++|+..++++++..|.++.++..+|.++...|++++|+.+|++++. ..|++..
T Consensus 343 ~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 412 (514)
T 2gw1_A 343 QLACLAY--------RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGI 412 (514)
T ss_dssp HHHHHTT--------TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTSSSCSSCS
T ss_pred HHHHHHH--------HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccchHHHHH
Confidence 9999998 999999999999999999999999999999999999999999999999999 6666644
Q ss_pred -HHHHHHHHHHHhhcCCCCcccchhhhHHhc---CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 575 -VWYNISHVAIITECSPFSFSTHTSYLFIQG---ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 650 (677)
Q Consensus 575 -~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 650 (677)
++..+|.++. . .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 413 ~~~~~l~~~~~-------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 413 APLVGKATLLT-------------------RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHH-------------------TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------------hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999998 9 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHH
Q psy16607 651 AAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 651 ~al~~~p~~~~~~~~la~~~ 670 (677)
++++++|+++.++..+....
T Consensus 474 ~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 474 ESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHH
Confidence 99999999999888776543
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4e-33 Score=288.98 Aligned_cols=318 Identities=16% Similarity=0.167 Sum_probs=269.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607 326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL 404 (677)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (677)
.++.+|.+++..|++++|+..|+++++..| +..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 346777778888888888888888877777 6777788888888888888888888888887887777888888888888
Q ss_pred CChhHHHHHHHHHHHhCc---CCHHHHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 405 NNMPMSVKYYKLILKRDA---TCMEAIACI------------GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 405 g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
|++++|+..|+++++.+| .+..++..+ |.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888887777 666666665 67888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH--------
Q psy16607 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN-------- 541 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------- 541 (677)
...|++++|+..+++++...|.+ ..++..+|.++. ..|++++|+..++++++..|++..++.
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDN--TEAFYKISTLYY--------QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 88888888888888888888887 888888888887 788888888888888888888877654
Q ss_pred ----HHHHHHHhccCHHHHHHHHHHHHHHhhccchHH----HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 542 ----NLALCCFYSQQYDMVVTCFERALSLALNENAAD----VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 542 ----~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~----~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
.+|.++...|++++|+..|++++. ..|++.. ++..+|.++. ..|++++|+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~-------------------~~~~~~~A~~ 293 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFS-------------------KDEKPVEAIR 293 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHH-------------------HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHH-------------------HccCHHHHHH
Confidence 448889999999999999999999 7787763 4667899988 9999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
.|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.2e-33 Score=299.96 Aligned_cols=336 Identities=15% Similarity=0.133 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16607 305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNA 383 (677)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (677)
...+...+.+++..+|. +...++.+|.++...|++++|+..|+++++..| +..++..+|.++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455666667777743 444447888899999999999999999988887 7888889999999999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHHHH------------HHHHHhCCChHHHHHHH
Q psy16607 384 LDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIACI------------GVNHFYNDQPEVALLFY 448 (677)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~ 448 (677)
++.+|++..++..+|.++...|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998888899999999999999999999999998888877 665555 66688899999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR 528 (677)
Q Consensus 449 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~ 528 (677)
++++...|.+..++..+|.+|...|++++|+..|++++...|.+ ..++..+|.++. ..|++++|+..|++
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN--TEAFYKISTLYY--------QLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHH--------HTTCHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887 888999999988 88999999999999
Q ss_pred HHHcCCCcHHHHHHH------------HHHHHhccCHHHHHHHHHHHHHHhhccchH----HHHHHHHHHHHHhhcCCCC
Q psy16607 529 LLQMGLYNAELFNNL------------ALCCFYSQQYDMVVTCFERALSLALNENAA----DVWYNISHVAIITECSPFS 592 (677)
Q Consensus 529 al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~p~~~----~~~~~l~~~~~~~~~~p~~ 592 (677)
++...|++...+..+ |.++...|++++|+.+|++++. ..|+++ ..+..+|.++.
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~-------- 306 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFS-------- 306 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHH--------
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHH--------
Confidence 999999988877666 9999999999999999999999 778774 47888999998
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
..|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..++.+...
T Consensus 307 -----------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 307 -----------KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp -----------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -----------HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999966443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=308.64 Aligned_cols=352 Identities=14% Similarity=0.068 Sum_probs=329.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR 369 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 369 (677)
.....|..++..|++++|+..|++++...| +..++..+|.++...|++++|+..|+++++.+| +..++..+|.++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 445567778889999999999999999996 466668999999999999999999999999999 88999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCC------------------------------------------------------------
Q psy16607 370 LDQPIRAIDIGRNALDCYPN------------------------------------------------------------ 389 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~------------------------------------------------------------ 389 (677)
.|++++|+..|++++...|.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999888763
Q ss_pred -------------------cHHHHHHHHHHHHH---cCChhHHHHHHHHHHH-----h--C-------cCCHHHHHHHHH
Q psy16607 390 -------------------EVTIMTEMARIFEG---LNNMPMSVKYYKLILK-----R--D-------ATCMEAIACIGV 433 (677)
Q Consensus 390 -------------------~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~ 433 (677)
+...+..+|.++.. .|++++|+..|++++. + . |.+..++..+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 26677888888776 8999999999999999 5 3 555788999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~ 513 (677)
++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.+ ..++..+|.++.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~------- 315 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN--SSVYYHRGQMNF------- 315 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--THHHHHHHHHHH-------
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--HHHHHHHHHHHH-------
Confidence 999999999999999999999999 9999999999999999999999999999999998 889999999998
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
..|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|++++. ..|++..++..+|.++.
T Consensus 316 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~--------- 383 (514)
T 2gw1_A 316 -ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILT--------- 383 (514)
T ss_dssp -HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHH---------
T ss_pred -HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL------SQNNLAVLEAR---EGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
..|++++|+..|++++...|.++. ++..+|.++.. .|++++|+..|+++++.+|++..+++
T Consensus 384 ----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 384 ----------DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ----------HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 999999999999999999988865 99999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q psy16607 665 NQAVISNLVSVI 676 (677)
Q Consensus 665 ~la~~~~~~G~i 676 (677)
.+|.++...|+.
T Consensus 454 ~la~~~~~~g~~ 465 (514)
T 2gw1_A 454 GLAQMKLQQEDI 465 (514)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhcCH
Confidence 999999999874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.3e-32 Score=295.34 Aligned_cols=353 Identities=11% Similarity=0.059 Sum_probs=318.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR 369 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 369 (677)
....++..++..|++++|+..|++++...|. ....++.+|.++...|++++|+..|+++++..| +..++..+|.++..
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4445667788899999999999999999865 455558999999999999999999999999998 89999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcH---HHHHHH------------HHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEV---TIMTEM------------ARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
.|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|+++++..|.+..++..+|.+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999988 776555 6669999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH------------H
Q psy16607 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI------------S 502 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l------------~ 502 (677)
|...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++ ...+..+ +
T Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 6666555 7
Q ss_pred HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHH
Q psy16607 503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE----LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578 (677)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 578 (677)
.++. ..|++++|+..|+++++..|.++. .+..+|.++...|++++|+..+++++. ..|++..+|..
T Consensus 265 ~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~ 334 (450)
T 2y4t_A 265 EELI--------RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKD 334 (450)
T ss_dssp HHHH--------HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHH--------HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 7776 899999999999999999999854 788999999999999999999999999 78999999999
Q ss_pred HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH------------HHHcC-----C
Q psy16607 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL------------EAREG-----H 641 (677)
Q Consensus 579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~ 641 (677)
+|.++. ..|++++|+..|+++++++|+++.++..++.+ |...| +
T Consensus 335 l~~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 335 RAEAYL-------------------IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHH-------------------HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHH-------------------HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999999 99999999999999999999999999999955 44445 6
Q ss_pred HHHHHHHHHH-HHHhCCCCh----------HHHHHHHHHHHhcCC
Q psy16607 642 IERASTYLQA-AAASSPYLY----------ETHYNQAVISNLVSV 675 (677)
Q Consensus 642 ~~~A~~~~~~-al~~~p~~~----------~~~~~la~~~~~~G~ 675 (677)
.+++...|++ +++..|++. .....++.+|..+|+
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 6788999987 888888642 255667777777765
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4e-32 Score=298.38 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=224.7
Q ss_pred ChHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHH
Q psy16607 372 QPIRAIDIGRNALDCYPNEVT-------IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA 444 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 444 (677)
++++|+..|+++++.+|++.. ++..+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 445555566666667777654 4677788888899999999999999999998 88899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607 445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALL 524 (677)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~ 524 (677)
+..++++++..|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++. ..|++++|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~ 365 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLY--------KQGKFTESEA 365 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHH--------HTTCHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999887 788999999988 8899999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHhhcCCCCcccchh
Q psy16607 525 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA------DVWYNISHVAIITECSPFSFSTHTS 598 (677)
Q Consensus 525 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~------~~~~~l~~~~~~~~~~p~~~~~~~~ 598 (677)
.++++++.+|.++.++..+|.++...|++++|+..|++++. ..|++. ..+..++.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~a~~~~-------------- 429 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEEVQEKIHVGIGPLIGKATILA-------------- 429 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHCSSCSSTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCcchhhHHHHHHHHHHHHHHH--------------
Confidence 99999999999999999999999999999999999999988 445433 23455566666
Q ss_pred hhHHhcC----------CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q psy16607 599 YLFIQGI----------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 665 (677)
Q Consensus 599 ~~~l~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 665 (677)
.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++.+....
T Consensus 430 -----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 430 -----RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp -----HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred -----HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 77 999999999999999999999999999999999999999999999999999999876543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3e-31 Score=274.79 Aligned_cols=318 Identities=10% Similarity=0.043 Sum_probs=294.5
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc
Q psy16607 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL 370 (677)
Q Consensus 292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 370 (677)
...+|.+++..|++++|+..|+++++..|. ....+..+|.++...|++++|+..|+++++..| +..++..+|.++...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 445677788899999999999999999965 455558999999999999999999999999999 899999999999999
Q ss_pred CChHHHHHHHHHHHHcCC---CcHHHHHHH------------HHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYP---NEVTIMTEM------------ARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
|++++|+..|+++++.+| .+..++..+ |.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999 888888777 78999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH------------HHHH
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY------------NISH 503 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~l~~ 503 (677)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++ ..++. .+|.
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 55443 3366
Q ss_pred HHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHH
Q psy16607 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE----LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579 (677)
Q Consensus 504 ~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l 579 (677)
++. ..|++++|+..++++++..|+++. ++..+|.++...|++++|+.+|+++++ .+|+++.++..+
T Consensus 243 ~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 312 (359)
T 3ieg_A 243 ELI--------RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDR 312 (359)
T ss_dssp HHH--------HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHH--------HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 666 899999999999999999999874 466799999999999999999999999 799999999999
Q ss_pred HHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607 580 SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 641 (677)
Q Consensus 580 ~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 641 (677)
|.++. ..|++++|+..|+++++++|++..++..++.++...++
T Consensus 313 ~~~~~-------------------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 313 AEAYL-------------------IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHH-------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------------------HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999988776553
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=289.75 Aligned_cols=355 Identities=11% Similarity=0.063 Sum_probs=276.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACE--------FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT------- 355 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 355 (677)
...++|+++...|++++|++.|+++++..+ +.....+.++|.+|..+|++++|+.+|++++++.+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 445789999999999999999999987622 23345567999999999999999999999987532
Q ss_pred --CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607 356 --DIEAFIRMIRVYIRL--DQPIRAIDIGRNALDCYPNEVTIMTEMARIFE---GLNNMPMSVKYYKLILKRDATCMEAI 428 (677)
Q Consensus 356 --~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~ 428 (677)
...++..+|.++... +++++|+.+|+++++++|++++++..++.++. ..++.++|++.|+++++++|.+..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~ 212 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence 467888888877665 47999999999999999999999999998855 45788999999999999999999999
Q ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 429 ACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 429 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
..+|..+.. .+++++|+.++++++..+|..+.++..+|.+|...|++++|+..|+++++..|++ ..++..+|.+
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~ 290 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--AYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh--HHHHHHHHHH
Confidence 888876654 4678899999999999999999999999999999999999999999999999998 9999999988
Q ss_pred HHHhhhcc-----------cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607 505 AILNALST-----------SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 505 ~~l~~l~~-----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
+....... ....+.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++. .++++.
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~--~~~~~~ 368 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS--KELTPV 368 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--SCCCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh--cCCCCh
Confidence 74110000 00123468899999999999999999999999999999999999999999998 555543
Q ss_pred ---HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC------------------------CCCh
Q psy16607 574 ---DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID------------------------SSHG 626 (677)
Q Consensus 574 ---~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~------------------------p~~~ 626 (677)
.++..+|.++. ...|++++|+..|++++++. |+++
T Consensus 369 ~~~~~~~~~~~~~~------------------~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 369 AKQLLHLRYGNFQL------------------YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp HHHHHHHHHHHHHH------------------HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CT
T ss_pred HHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34566665432 27899999999999888764 5667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
.++.++|.+|...|++++|+++|+++++++|.++.+...+|
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 88999999999999999999999999999999999888776
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=272.27 Aligned_cols=292 Identities=10% Similarity=0.046 Sum_probs=271.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
+...+..++..+...|++++|+..++++++.+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607 436 FYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514 (677)
Q Consensus 436 ~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~ 514 (677)
...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~-------- 170 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLYIGLEYG-------- 170 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--SHHHHHHHHHHH--------
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc--HHHHHHHHHHHH--------
Confidence 9999 89999999999999999999999999999999999999999999999999987 788888999998
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHhh
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-------ENAADVWYNISHVAIITE 587 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------p~~~~~~~~l~~~~~~~~ 587 (677)
..|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++..... |....++..+|.++.
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~--- 247 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR--- 247 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH---
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH---
Confidence 8999999999999999999999999999999999999999999999999984311 666789999999999
Q ss_pred cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
..|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|+++++++|++..++..++
T Consensus 248 ----------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 248 ----------------KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred ----------------HhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HhcCCC
Q psy16607 668 VIS-NLVSVI 676 (677)
Q Consensus 668 ~~~-~~~G~i 676 (677)
.++ ...|+.
T Consensus 312 ~~~~~~~g~~ 321 (330)
T 3hym_B 312 HCIEMYIGDS 321 (330)
T ss_dssp HHHHTTTTC-
T ss_pred HHHHHHhCch
Confidence 988 566654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-31 Score=293.46 Aligned_cols=353 Identities=13% Similarity=0.091 Sum_probs=311.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHH
Q psy16607 290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYI 368 (677)
Q Consensus 290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~ 368 (677)
......|..++..|++++|+..|++++...|. +...+..+|.++...|++++|+..|+++++.+| +..++..+|.++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34556788899999999999999999999964 455558999999999999999999999999999 8999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHH-------------------------------------------------------
Q psy16607 369 RLDQPIRAIDIGRNALDCYPNEVTI------------------------------------------------------- 393 (677)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------------------------- 393 (677)
..|++++|+..|+ ++...|+....
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999995 67666654322
Q ss_pred -------------HHHHH--------HHHHHcCChhHHHHHHHHHHHhCcCCHH-------HHHHHHHHHHhCCChHHHH
Q psy16607 394 -------------MTEMA--------RIFEGLNNMPMSVKYYKLILKRDATCME-------AIACIGVNHFYNDQPEVAL 445 (677)
Q Consensus 394 -------------~~~la--------~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~ 445 (677)
...++ ......|++++|+..|+++++.+|++.. ++..+|.++...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 11121 1222335899999999999999999855 5778889999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF 525 (677)
Q Consensus 446 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~ 525 (677)
..+++++...|. ..++..+|.++...|++++|+.+|++++...|++ ..++..+|.++. ..|++++|+..
T Consensus 264 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~ 332 (537)
T 3fp2_A 264 VLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYF--------ILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHH
T ss_pred HHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHH--------hcCCHHHHHHH
Confidence 999999999999 9999999999999999999999999999999998 999999999998 99999999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605 (677)
Q Consensus 526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~ 605 (677)
|+++++.+|.+..++..+|.++...|++++|+.+|++++. ..|++..++..+|.++. ..
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~ 391 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILT-------------------DR 391 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH-------------------HT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------Hh
Confidence 9999999999999999999999999999999999999999 88999999999999999 99
Q ss_pred CCHHHHHHHHHHHHccCCCChH------HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 606 SDTRLAIQCLHLALSIDSSHGL------SQNNLAVLEARE----------GHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 606 g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
|++++|+..|+++++..|.+.. .+..+|.++... |++++|+..|+++++.+|++..+++++|.+
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998876543 366778999999 999999999999999999999999999999
Q ss_pred HHhcCCC
Q psy16607 670 SNLVSVI 676 (677)
Q Consensus 670 ~~~~G~i 676 (677)
+...|+.
T Consensus 472 ~~~~g~~ 478 (537)
T 3fp2_A 472 KLQMEKI 478 (537)
T ss_dssp HHHTTCH
T ss_pred HHHhccH
Confidence 9999974
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=2.3e-30 Score=265.06 Aligned_cols=287 Identities=16% Similarity=0.119 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607 326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL 404 (677)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (677)
++..+|..++..|++++|+..|+++++.+| +..++..++.++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 337899999999999999999999999998 7888889999999999999999999999999999999999999999999
Q ss_pred C-ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 405 N-NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 405 g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 483 (677)
| ++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHhccCHH
Q psy16607 484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG---------LYNAELFNNLALCCFYSQQYD 554 (677)
Q Consensus 484 ~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~ 554 (677)
+++...|.+ ..++..+|.++. ..|++++|+..++++++.. |..+.++..+|.++...|+++
T Consensus 184 ~al~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 184 QALSIAPED--PFVMHEVGVVAF--------QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHTTCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCCC--hHHHHHHHHHHH--------HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999998 999999999998 9999999999999999876 677889999999999999999
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634 (677)
Q Consensus 555 ~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 634 (677)
+|+.+|+++++ ..|++..++..+|.++. ..|++++|+.+|+++++++|+++.++..++.
T Consensus 254 ~A~~~~~~a~~--~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 254 EALDYHRQALV--LIPQNASTYSAIGYIHS-------------------LMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHH--HSTTCSHHHHHHHHHHH-------------------HHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 99999999999 88999999999999999 9999999999999999999999999999999
Q ss_pred HH-HHcCCHH
Q psy16607 635 LE-AREGHIE 643 (677)
Q Consensus 635 ~~-~~~g~~~ 643 (677)
++ ...|+.+
T Consensus 313 ~~~~~~g~~~ 322 (330)
T 3hym_B 313 CIEMYIGDSE 322 (330)
T ss_dssp HHHTTTTC--
T ss_pred HHHHHhCchh
Confidence 88 5666654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.5e-30 Score=269.43 Aligned_cols=293 Identities=14% Similarity=0.073 Sum_probs=262.4
Q ss_pred HHHHcCCHHHHHH-HHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 333 CYFSLGLIREAQQ-QFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 333 ~~~~~g~~~~A~~-~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
++...|+|++|+. .|++++...| ....++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566789999999 9999988766 256789999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH----------------HHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN----------------NLALCCF 470 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~la~~~~ 470 (677)
+++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999998876664 466666
Q ss_pred HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607 471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550 (677)
Q Consensus 471 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 550 (677)
..|++++|+..|++++...|......++..+|.++. ..|++++|+..|++++..+|.++.++..+|.++...
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN--------LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999212899999999998 999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-----
Q psy16607 551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH----- 625 (677)
Q Consensus 551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~----- 625 (677)
|++++|+.+|++++. ..|++..++..+|.++. ..|++++|+..|++++.+.|++
T Consensus 265 g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 265 NQSEEAVAAYRRALE--LQPGYIRSRYNLGISCI-------------------NLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 999999999999999 88999999999999999 9999999999999999999887
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 626 ------GLSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 626 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
..+|..+|.++...|++++|..+++++++.
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 899999999999999999999999887764
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.3e-28 Score=262.70 Aligned_cols=323 Identities=13% Similarity=0.005 Sum_probs=280.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----
Q psy16607 323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQ---------FT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY----- 387 (677)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 387 (677)
....+..+|.++..+|++++|+..|++++++ .| ...++.++|.+|..+|++++|+.++++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4456688999999999999999999999875 23 46788999999999999999999999998763
Q ss_pred ---CCcHHHHHHHHHHHHHc--CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCH
Q psy16607 388 ---PNEVTIMTEMARIFEGL--NNMPMSVKYYKLILKRDATCMEAIACIGVNHF---YNDQPEVALLFYRRLLQMGLYNA 459 (677)
Q Consensus 388 ---p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~ 459 (677)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++. ..++.++|++.++++++++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 45678888888877665 47999999999999999999999999988754 46788999999999999999999
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607 460 ELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535 (677)
Q Consensus 460 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~ 535 (677)
.++..+|..+... |++++|+.++++++..+|.. ..++..+|.++. ..|++++|+..|+++++.+|+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYR--------RKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHH--------HcCchHHHHHHHHHHHHhCCC
Confidence 9999998776654 67889999999999999998 999999999998 999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc-------------------cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607 536 NAELFNNLALCCFYS-------------------QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596 (677)
Q Consensus 536 ~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~ 596 (677)
++.++..+|.+|... +.+++|+..|++++. .+|....++..+|.++.
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~------------ 345 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHA------------ 345 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHH------------
Confidence 999999999988653 346889999999999 89999999999999999
Q ss_pred hhhhHHhcCCCHHHHHHHHHHHHccCCCChH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHh-----------------
Q psy16607 597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGL---SQNNLAVL-EAREGHIERASTYLQAAAAS----------------- 655 (677)
Q Consensus 597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~----------------- 655 (677)
..|++++|+.+|++++++.|++.. ++..+|.+ +...|++++|+..|++++++
T Consensus 346 -------~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~ 418 (472)
T 4g1t_A 346 -------LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418 (472)
T ss_dssp -------HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred -------HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999887653 45667765 45789999999999998876
Q ss_pred -------CCCChHHHHHHHHHHHhcCCC
Q psy16607 656 -------SPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 656 -------~p~~~~~~~~la~~~~~~G~i 676 (677)
+|+++.++.+||.++...|+.
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 466678899999999998865
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.5e-29 Score=261.89 Aligned_cols=279 Identities=15% Similarity=0.095 Sum_probs=251.2
Q ss_pred HHHHcCChHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q psy16607 366 VYIRLDQPIRAID-IGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440 (677)
Q Consensus 366 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 440 (677)
++...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566789999999 9999999888764 5689999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH----------------HHHHH
Q psy16607 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY----------------NISHV 504 (677)
Q Consensus 441 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------------~l~~~ 504 (677)
+++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|.+ ...+. .++.+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 33332 23433
Q ss_pred HHHhhhcccccCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607 505 AILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~ 582 (677)
+ ..|++++|+..|+++++.+|. ++.++..+|.++...|++++|+.+|++++. ..|++..++..+|.+
T Consensus 192 ~---------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 192 L---------SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGAT 260 (368)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred h---------hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHH
Confidence 3 679999999999999999999 899999999999999999999999999999 889999999999999
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--- 659 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 659 (677)
+. ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++++++.|++
T Consensus 261 ~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 261 LA-------------------NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HH-------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 99 99999999999999999999999999999999999999999999999999999988
Q ss_pred --------hHHHHHHHHHHHhcCCC
Q psy16607 660 --------YETHYNQAVISNLVSVI 676 (677)
Q Consensus 660 --------~~~~~~la~~~~~~G~i 676 (677)
..++.++|.++..+|+.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCG
T ss_pred cccccchhhHHHHHHHHHHHHhCCh
Confidence 89999999999999974
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=2.3e-28 Score=254.57 Aligned_cols=267 Identities=13% Similarity=0.124 Sum_probs=236.5
Q ss_pred HHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 378 DIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 378 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
..+.+.+...+.++ ..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44445444555444 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH----------HHHHHHHhhhcccccCCCHHHHH
Q psy16607 454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN----------ISHVAILNALSTSVYNDQPEVAL 523 (677)
Q Consensus 454 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------l~~~~~l~~l~~~~~~~~~~~A~ 523 (677)
.+|.+..++..+|.++...|++++|+.+|++++...|++ ...+.. ++.++. ..|++++|+
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~~A~ 197 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY--KYLVKNKKGSPGLTRRMSKSPV--------DSSVLEGVK 197 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HCC---------------------------CCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc--hHHHhhhccchHHHHHHHHHHh--------hhhhHHHHH
Confidence 999999999999999999999999999999999998876 444444 477776 899999999
Q ss_pred HHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607 524 LFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601 (677)
Q Consensus 524 ~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~ 601 (677)
..|+++++.+|. ++.++..+|.++...|++++|+.+|++++. ..|++..+|..+|.++.
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~----------------- 258 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLA----------------- 258 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-----------------
Confidence 999999999999 999999999999999999999999999999 89999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHH
Q psy16607 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY------------LYETHYNQAVI 669 (677)
Q Consensus 602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~ 669 (677)
..|++++|+..|+++++++|+++.++..+|.++...|++++|+.+|++++++.|+ +..+|..++.+
T Consensus 259 --~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 259 --NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp --HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred --HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 36789999999
Q ss_pred HHhcCC
Q psy16607 670 SNLVSV 675 (677)
Q Consensus 670 ~~~~G~ 675 (677)
+..+|.
T Consensus 337 ~~~~g~ 342 (365)
T 4eqf_A 337 LSLMDQ 342 (365)
T ss_dssp HHHHTC
T ss_pred HHHcCc
Confidence 998886
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.6e-28 Score=253.05 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=179.0
Q ss_pred HccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhCcCCHHHH
Q psy16607 351 LNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN-MPMSVKYYKLILKRDATCMEAI 428 (677)
Q Consensus 351 l~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 428 (677)
+...| +..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 33444 556666666666666666666666666666666666666666666666664 6666666666666666666666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Q psy16607 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508 (677)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~ 508 (677)
+++|.++...|++++|+..|+++++++|.+..+|+++|.++...|++++|+.+|+++++++|++ ..+|+++|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~lg------ 241 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRY------ 241 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHH------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHH------
Confidence 6666666666666666666666666666555555555555555555555555555555555554 44555444
Q ss_pred hhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-ccCHHHH-----HHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-SQQYDMV-----VTCFERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~p~~~~~~~~l~~~ 582 (677)
.++.. .|.+++| +.+|++++. .+|++..+|++++.+
T Consensus 242 ------------------------------------~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~l 283 (382)
T 2h6f_A 242 ------------------------------------FVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGI 283 (382)
T ss_dssp ------------------------------------HHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred ------------------------------------HHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 44444 3333444 688888888 889999999999998
Q ss_pred HHHhhcCCCCcccchhhhHHhcCC--CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---------HIERASTYLQA 651 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~ 651 (677)
+. ..| ++++|++.++++ +.+|+++.++..+|.+|.++| .+++|+.+|++
T Consensus 284 l~-------------------~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 284 LQ-------------------DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp HT-------------------TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-------------------ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 87 777 689999999998 999999999999999999985 35999999999
Q ss_pred H-HHhCCCChHHHHHHHHHHHh
Q psy16607 652 A-AASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 652 a-l~~~p~~~~~~~~la~~~~~ 672 (677)
+ ++++|.....|..++..+..
T Consensus 344 l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHH
Confidence 9 99999999999999988754
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.7e-28 Score=255.63 Aligned_cols=269 Identities=12% Similarity=0.041 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34466666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFN----------NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
..|++++|+..|+++++..|.+...+. .+|.++...|++++|+.+|++++...|....+.++..+|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666666666665444433 3477777777777788777777777777211777777777777
Q ss_pred HhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607 507 LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIIT 586 (677)
Q Consensus 507 l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~ 586 (677)
..|++++|+..|+++++..|.++.+|..+|.++...|++++|+.+|++++. .+|++..++..+|.++.
T Consensus 225 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-- 292 (365)
T 4eqf_A 225 --------LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCI-- 292 (365)
T ss_dssp --------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--
T ss_pred --------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHH--
Confidence 777888888888888888888888888888888888888888888888887 67777888888888877
Q ss_pred hcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 587 ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------------HGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 587 ~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
..|++++|+.+|++++++.|+ +..+|..++.++...|+.+.|....++.+.
T Consensus 293 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 293 -----------------NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp -----------------HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred -----------------HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 888888888888888877765 367899999999999999999888776443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1.1e-27 Score=244.73 Aligned_cols=271 Identities=14% Similarity=0.076 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY 437 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 437 (677)
..++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHH
Q psy16607 438 NDQPEVALLFYRRLLQMGLYNAELFNNL--------------AL-CCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 502 (677)
Q Consensus 438 ~g~~~~A~~~~~~al~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 502 (677)
.|++++|+..+++++...|.+...+..+ +. ++...|++++|+..+++++...|.+ ..++..+|
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND--AQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHH
Confidence 5555555555555555555555444444 55 5777888888888888888888887 88888888
Q ss_pred HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607 503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~ 582 (677)
.++. ..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++. ..|++..++..+|.+
T Consensus 180 ~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 180 VLYN--------LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHH--------HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 8887 889999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------------HGLSQNNLAVLEAREGHIERASTYLQ 650 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~ 650 (677)
+. ..|++++|+..|++++...|. +..++..+|.++...|++++|...++
T Consensus 250 ~~-------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 250 YS-------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HH-------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HH-------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 98 999999999999999999998 78999999999999999999999999
Q ss_pred HHHHhCCCC
Q psy16607 651 AAAASSPYL 659 (677)
Q Consensus 651 ~al~~~p~~ 659 (677)
++++..|+.
T Consensus 311 ~~l~~~~~~ 319 (327)
T 3cv0_A 311 QNVEPFAKE 319 (327)
T ss_dssp CCSHHHHHH
T ss_pred HHHHhcchh
Confidence 888776543
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.4e-27 Score=245.71 Aligned_cols=260 Identities=9% Similarity=0.009 Sum_probs=217.7
Q ss_pred HHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHH
Q psy16607 315 STKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ-PIRAIDIGRNALDCYPNEVT 392 (677)
Q Consensus 315 a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 392 (677)
++...| .....+..+|.++...|++++|+..|++++..+| +..+|..+|.++..+|+ +++|+..|+++++++|++..
T Consensus 89 ai~~~p-~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 89 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhCCh-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 455564 3445558999999999999999999999999999 89999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY- 471 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 471 (677)
+|+.+|.++..+|++++|+..|+++++++|++..+|+++|.++...|++++|+.+|+++++++|.+..+|+++|.++..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHH-----HHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607 472 SQQYDMV-----VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 546 (677)
Q Consensus 472 ~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 546 (677)
.|.+++| +.+|++++.++|++ ..+|+.++.++. ..|.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~--~~a~~~l~~ll~--------~~g~---------------------------- 289 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHN--ESAWNYLKGILQ--------DRGL---------------------------- 289 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHT--------TTCG----------------------------
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH--------ccCc----------------------------
Confidence 5554666 46666666666666 666666666654 3331
Q ss_pred HHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC--------CC-HHHHHHHHHH
Q psy16607 547 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI--------SD-TRLAIQCLHL 617 (677)
Q Consensus 547 ~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~--------g~-~~~A~~~~~~ 617 (677)
+++++|+..++++ + .+|++..++..+|.+|. .+ ++ +++|+.+|++
T Consensus 290 ----~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~-------------------~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 290 ----SKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYE-------------------DMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp ----GGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHH-------------------HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----cchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHH-------------------HHhcccccchHHHHHHHHHHHHH
Confidence 1345555555554 3 55666666666666665 44 23 5899999999
Q ss_pred H-HccCCCChHHHHHHHHHHHHc
Q psy16607 618 A-LSIDSSHGLSQNNLAVLEARE 639 (677)
Q Consensus 618 a-l~~~p~~~~~~~~la~~~~~~ 639 (677)
+ ++++|.....|..++..+...
T Consensus 344 l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHHH
Confidence 9 999999999999999887654
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.3e-24 Score=233.75 Aligned_cols=331 Identities=14% Similarity=0.119 Sum_probs=246.7
Q ss_pred HHHHHHHHHhc----ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCHHHHHH
Q psy16607 291 AKYLFEYLYHH----ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFS----LGLIREAQQQFNSALNQFTDIEAFIR 362 (677)
Q Consensus 291 a~~l~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 362 (677)
+...++.+|.. .+++++|+.+|+++.+.. +...++.+|.+|.. .+++++|+.+|+++.+.. +..+++.
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~ 116 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 44455666666 678888888888887653 44555778888887 788888888888877643 6677778
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 363 MIRVYIR----LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 363 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+++|+++++. .++.+++.+|.+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 8888877 77888888888887665 467778888888877 67888888888888765 467788888888
Q ss_pred HHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 435 HFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 435 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++.. + ..+++.+|.++.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--N--SIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--C--HHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C--HHHHHHHHHHHH
Confidence 877 77888888888887765 467778888888876 778888888888877653 2 667777887776
Q ss_pred Hhhhccccc----CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607 507 LNALSTSVY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----QQYDMVVTCFERALSLALNENAADVWY 577 (677)
Q Consensus 507 l~~l~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~p~~~~~~~ 577 (677)
. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++++ ..+..+++
T Consensus 267 --------~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~----~~~~~a~~ 332 (490)
T 2xm6_A 267 --------QGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE----QGDATAQA 332 (490)
T ss_dssp --------HTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred --------CCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh----cCCHHHHH
Confidence 4 67788888888887754 5667778888888777 788888888888776 24567777
Q ss_pred HHHHHHHHhhcCCCCcccchhhhHHhcCC---CHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy16607 578 NISHVAIITECSPFSFSTHTSYLFIQGIS---DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQ 650 (677)
Q Consensus 578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~ 650 (677)
.+|.+|. ..| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+
T Consensus 333 ~lg~~y~-------------------~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 333 NLGAIYF-------------------RLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHH-------------------HSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHH-------------------hCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887776 545 677777777777765 467777777777777 777777777777
Q ss_pred HHHHhCCCChHHHHHHHHHHHh
Q psy16607 651 AAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 651 ~al~~~p~~~~~~~~la~~~~~ 672 (677)
++++.. ++.++++||.+|..
T Consensus 392 ~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 392 KAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHhCC--CHHHHHHHHHHHHc
Confidence 777653 57777777777765
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=9.5e-27 Score=237.74 Aligned_cols=265 Identities=16% Similarity=0.162 Sum_probs=242.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
+.+|..+...|++++|+..|+++++..| +..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 6889999999999999999999999888 888899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACI--------------GV-NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 471 (677)
+++|+..|++++...|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|.++..
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999998887776666 66 68888999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q psy16607 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 551 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 551 (677)
.|++++|+.++++++...|++ ..++..+|.++. ..|++++|+..|+++++..|.+..++..+|.++...|
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDD--AQLWNKLGATLA--------NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998 999999999998 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 552 QYDMVVTCFERALSLALNEN------------AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 552 ~~~~A~~~~~~al~~~~~p~------------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
++++|+.+|++++. ..|+ ...+|..++.++. ..|++++|...+++++
T Consensus 255 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLN-------------------VMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHH-------------------HTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHH
Confidence 99999999999999 6787 7899999999999 9999999999998877
Q ss_pred ccCC
Q psy16607 620 SIDS 623 (677)
Q Consensus 620 ~~~p 623 (677)
+..|
T Consensus 314 ~~~~ 317 (327)
T 3cv0_A 314 EPFA 317 (327)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6544
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.6e-24 Score=233.27 Aligned_cols=331 Identities=14% Similarity=0.096 Sum_probs=296.5
Q ss_pred HHHHHHHHHhc----ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCHHHHHH
Q psy16607 291 AKYLFEYLYHH----ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFS----LGLIREAQQQFNSALNQFTDIEAFIR 362 (677)
Q Consensus 291 a~~l~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 362 (677)
+...++.+|.. .+++++|+.+|+++.+.. ....++.+|.+|.. .+++++|+.+|+++.... +..+++.
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~ 152 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 56677888888 899999999999999865 55566899999999 899999999999998753 7889999
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 363 MIRVYIR----LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 363 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 228 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADM 228 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 9999998 88999999999999886 579999999999998 89999999999999875 468899999999
Q ss_pred HHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 435 HFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 435 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+ ..+++.+|.++.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~--~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN--SDGQYYLAHLYD 302 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC--HHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC--HHHHHHHHHHHH
Confidence 997 89999999999999876 578899999999999 99999999999999876 33 789999999997
Q ss_pred HhhhcccccC-----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhccchHHHHHH
Q psy16607 507 LNALSTSVYN-----DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYN 578 (677)
Q Consensus 507 l~~l~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~p~~~~~~~~ 578 (677)
.. +++++|+.+|+++++. .++.+++.+|.++...| ++++|+.+|+++++ . .++.++++
T Consensus 303 --------~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~--~--~~~~a~~~ 368 (490)
T 2xm6_A 303 --------KGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA--K--GEKAAQFN 368 (490)
T ss_dssp --------HCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH--T--TCHHHHHH
T ss_pred --------cCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH--C--CCHHHHHH
Confidence 55 8999999999999986 46789999999999866 89999999999998 3 67899999
Q ss_pred HHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy16607 579 ISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQ 650 (677)
Q Consensus 579 l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~ 650 (677)
+|.+|. . .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+
T Consensus 369 Lg~~y~-------------------~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 369 LGNALL-------------------QGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHH-------------------HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHH-------------------cCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999998 7 89999999999999986 468999999999999 899999999999
Q ss_pred HHHHhCCC---ChHHHHHHHHHH
Q psy16607 651 AAAASSPY---LYETHYNQAVIS 670 (677)
Q Consensus 651 ~al~~~p~---~~~~~~~la~~~ 670 (677)
++++.+|+ ++.+..+++.++
T Consensus 428 ~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 428 TASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHCCCCCcCCHHHHHHHHhcC
Confidence 99999954 888888877654
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=5.5e-26 Score=225.88 Aligned_cols=255 Identities=10% Similarity=0.046 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGV 433 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 433 (677)
+.++..|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++. .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 34555566666666666666666666666666655666666666666666666666666655 2222 333555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHH-HHHHHhhhcc
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS-HVAILNALST 512 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~-~~~~l~~l~~ 512 (677)
++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.+ ..+++.+| .++.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~------ 154 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAYYY------ 154 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHHHH------
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHHHH------
Confidence 55555555555555555555555555555555555555555555555555555555554 55555555 3332
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
.+++++|+..|+++++.+|++..++..+|.++...++
T Consensus 155 ---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~---------------------------------------- 191 (272)
T 3u4t_A 155 ---NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP---------------------------------------- 191 (272)
T ss_dssp ---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST----------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc----------------------------------------
Confidence 2344445554444444444444444444444444444
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccC---CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSID---SS-----HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
..++++|+..|+++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++-
T Consensus 192 ------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 192 ------------DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp ------------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence 000444555555555443 22 2367889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q psy16607 665 NQAVISNLVSVI 676 (677)
Q Consensus 665 ~la~~~~~~G~i 676 (677)
.++.+....|..
T Consensus 260 ~l~~~~~~~~~~ 271 (272)
T 3u4t_A 260 GLKMKLEHHHHH 271 (272)
T ss_dssp HHC---------
T ss_pred HhhhhhcccccC
Confidence 998887766543
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-25 Score=217.64 Aligned_cols=241 Identities=11% Similarity=0.013 Sum_probs=193.3
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------HHHH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------AELF 462 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~ 462 (677)
....+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|.. +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 34566677777777777777777777777777 667777777777777777777777777777766655 5777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q psy16607 463 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN 542 (677)
Q Consensus 463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 542 (677)
..+|.++...|++++|+.+|++++...|. . .++. ..|++++|+..+++++..+|.++.++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~-------~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---A-------DILT--------KLRNAEKELKKAEAEAYVNPEKAEEARL 144 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---H-------HHHH--------HHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---h-------HHHH--------HHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 77788888888888888888888777665 2 2333 5567788888888888888888888888
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 543 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 543 la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
+|.++...|++++|+.+|++++. ..|.+..++..+|.++. ..|++++|+..|+++++.+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALA-------------------KLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHhC
Confidence 88888889999999999999988 78888888999999888 8999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHH
Q psy16607 623 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS------PYLYETHYNQAVIS 670 (677)
Q Consensus 623 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 670 (677)
|+++.++..+|.++...|++++|+..|+++++++ |++..++..++.++
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 9999999999999999999999999999999998 88888887777653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.2e-24 Score=218.07 Aligned_cols=276 Identities=13% Similarity=0.126 Sum_probs=213.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607 331 GKCYFSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (677)
.+..+..|+|++|+..+++.....| ..+....++++|..+|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 3456778888888888887777666 245777778888888888888877655 25556677778888888888888
Q ss_pred HHHHHHHHHHHh--CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 409 MSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 409 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
+|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |.+..++..+|.++..+|++++|+..|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888888765 588888888888888888888888888887 7888888888888888888888888888888
Q ss_pred hhhcccchHHHHHHHH--HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607 487 SLALNENAADVWYNIS--HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564 (677)
Q Consensus 487 ~~~p~~~~~~~~~~l~--~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 564 (677)
+.+|++ .......+ .++. ..|++++|+..|+++++..|+++.+++.+|.++...|++++|+..|++++
T Consensus 158 ~~~p~~--~~~~l~~a~~~l~~--------~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 158 DQDEDA--TLTQLATAWVSLAA--------GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHCTTC--HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhCcCc--HHHHHHHHHHHHHh--------CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888776 33322222 2222 45788888888888888888888888888888888888888888888888
Q ss_pred HHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH-HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHH
Q psy16607 565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL-AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE 643 (677)
Q Consensus 565 ~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 643 (677)
. .+|+++.++.++|.++. ..|++.+ +..+++++++++|+++.+.. +..+.+.++
T Consensus 228 ~--~~p~~~~~l~~l~~~~~-------------------~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd 282 (291)
T 3mkr_A 228 D--KDSGHPETLINLVVLSQ-------------------HLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFD 282 (291)
T ss_dssp H--HCTTCHHHHHHHHHHHH-------------------HTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHH-------------------HcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHH
Confidence 8 78888888888888887 8888765 46788888888888876543 445556666
Q ss_pred HHHHHH
Q psy16607 644 RASTYL 649 (677)
Q Consensus 644 ~A~~~~ 649 (677)
++..-|
T Consensus 283 ~~~~~~ 288 (291)
T 3mkr_A 283 RLVLQY 288 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 665544
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=2.6e-25 Score=220.97 Aligned_cols=256 Identities=14% Similarity=0.141 Sum_probs=217.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Q psy16607 327 KVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE----VTIMTEMARIF 401 (677)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 401 (677)
++.+|.+++..|++++|+..|+++++.+| +..++..+|.++...|++++|+..++++++ .|.+ ..++..+|.++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 36899999999999999999999999998 778999999999999999999999999999 4433 44589999999
Q ss_pred HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 402 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 481 (677)
...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|......+++++|+..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999555566799999999
Q ss_pred HHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 482 ~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
|+++++..|++ ..++..+|.++. ..++ +++|+..|+++++.....+..
T Consensus 165 ~~~a~~~~p~~--~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------- 215 (272)
T 3u4t_A 165 FVKVLELKPNI--YIGYLWRARANA--------AQDPDTKQGLAKPYYEKLIEVCAPGGAK------------------- 215 (272)
T ss_dssp HHHHHHHSTTC--HHHHHHHHHHHH--------HHSTTCSSCTTHHHHHHHHHHHGGGGGG-------------------
T ss_pred HHHHHHhCccc--hHHHHHHHHHHH--------HcCcchhhHHHHHHHHHHHHHHhccccc-------------------
Confidence 99999999998 899999999987 5565 666666666665432110000
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607 559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638 (677)
Q Consensus 559 ~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 638 (677)
..+....++..+|.++. ..|++++|+.+|+++++++|+++.++..++.+...
T Consensus 216 ---------~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 216 ---------YKDELIEANEYIAYYYT-------------------INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp ---------GHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred ---------chHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 00112467888999998 99999999999999999999999999988877655
Q ss_pred cC
Q psy16607 639 EG 640 (677)
Q Consensus 639 ~g 640 (677)
.+
T Consensus 268 ~~ 269 (272)
T 3u4t_A 268 HH 269 (272)
T ss_dssp --
T ss_pred cc
Confidence 44
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.5e-23 Score=229.57 Aligned_cols=343 Identities=10% Similarity=0.027 Sum_probs=281.8
Q ss_pred hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHH-HHHcCChHHHHH
Q psy16607 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRV-YIRLDQPIRAID 378 (677)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~-~~~~g~~~~A~~ 378 (677)
...|++++|..+|+++++..|.+...| ..++..+...|++++|...|++++...|+...|..++.. ....|++++|.+
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w-~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFW-KLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHH
Confidence 347999999999999999997666666 789999999999999999999999999988888888853 445677777665
Q ss_pred ----HHHHHHHc---CCCcHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHhCcCCH--HHHHHHHH-------
Q psy16607 379 ----IGRNALDC---YPNEVTIMTEMARIFEG---------LNNMPMSVKYYKLILKRDATCM--EAIACIGV------- 433 (677)
Q Consensus 379 ----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~--~~~~~la~------- 433 (677)
.|++++.. +|.+..+|...+..... .|++++|..+|+++++ .|... ..|.....
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch
Confidence 77777654 45677888887777665 6888999999999888 45431 12211100
Q ss_pred ----------------------------------------------------------HHHh----CCCh----HHHHHH
Q psy16607 434 ----------------------------------------------------------NHFY----NDQP----EVALLF 447 (677)
Q Consensus 434 ----------------------------------------------------------~~~~----~g~~----~~A~~~ 447 (677)
.... .++. ..++..
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 0000 0122 367789
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hhcccchHHHHHHHHHHHHHhhhcc
Q psy16607 448 YRRLLQMGLYNAELFNNLALCCFY-------SQQYD-------MVVTCFERALS-LALNENAADVWYNISHVAILNALST 512 (677)
Q Consensus 448 ~~~al~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~l~~~~~l~~l~~ 512 (677)
|++++...|.++.+|..+|.++.. .|+++ +|+..|+++++ ..|++ ..+|..++.++.
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--~~l~~~~~~~~~------ 332 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEE------ 332 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHH------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH------
Confidence 999999999999999999999987 79987 99999999997 78988 999999999998
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHhhcCC
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIITECSP 590 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~-~~~~~~~p 590 (677)
..|++++|...|+++++..|.++ .+|..++.++.+.|++++|+..|+++++ ..|.....+...+.+ +.
T Consensus 333 --~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~------ 402 (530)
T 2ooe_A 333 --SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYY------ 402 (530)
T ss_dssp --HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHH------
T ss_pred --hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHH------
Confidence 89999999999999999999986 6999999999999999999999999998 666666666555544 33
Q ss_pred CCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH----HHHHH
Q psy16607 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----THYNQ 666 (677)
Q Consensus 591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 666 (677)
..|++++|...|+++++..|+++.+|..++.++...|+.++|+.+|++++...|.+++ .|...
T Consensus 403 -------------~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 403 -------------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp -------------HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred -------------HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999876654 77666
Q ss_pred HHHHHhcCC
Q psy16607 667 AVISNLVSV 675 (677)
Q Consensus 667 a~~~~~~G~ 675 (677)
.......|+
T Consensus 470 ~~~e~~~G~ 478 (530)
T 2ooe_A 470 LAFESNIGD 478 (530)
T ss_dssp HHHHHHSSC
T ss_pred HHHHHHcCC
Confidence 777777775
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-24 Score=212.22 Aligned_cols=239 Identities=12% Similarity=0.023 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-------HHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-------MEAIA 429 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 429 (677)
...+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.+ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4566677777777777777777777777777 667777777777777777777777777777776655 56777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhh
Q psy16607 430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNA 509 (677)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~ 509 (677)
.+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++...|.. ..++..+|.++.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~--- 150 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYF--- 150 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHH---
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHH---
Confidence 7777777777777777777777777665 455666777777777777777777776 777777777777
Q ss_pred hcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607 510 LSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS 589 (677)
Q Consensus 510 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~ 589 (677)
..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++. .+|++..++..+|.++.
T Consensus 151 -----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~----- 218 (258)
T 3uq3_A 151 -----TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQI----- 218 (258)
T ss_dssp -----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-----
T ss_pred -----HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHH-----
Confidence 777777777777777777777777777788888788888888888888777 67777777777777777
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHccC------CCChHHHHHHHHH
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSID------SSHGLSQNNLAVL 635 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 635 (677)
..|++++|+..|+++++++ |.+..++..++.+
T Consensus 219 --------------~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 219 --------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp --------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred --------------HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 7788888888888877777 7776666666543
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=231.94 Aligned_cols=294 Identities=13% Similarity=0.108 Sum_probs=225.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------CcCCH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKR------DATCM 425 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 425 (677)
....+..+|.++...|++++|+..|+++++..|.+. .++..+|.++...|++++|+.+|++++.+ .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344556666666666666666666666666666553 45666666666677777777776666655 23335
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q psy16607 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQ--------------------YDMVV 479 (677)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~ 479 (677)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566777777777777777777777777654432 4577888888888888 88888
Q ss_pred HHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHh
Q psy16607 480 TCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFY 549 (677)
Q Consensus 480 ~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~ 549 (677)
..+++++.+.+.. ....++..+|.++. ..|++++|+.+++++++..+... .++..+|.++..
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHY--------LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 8888888763221 23678899999998 99999999999999997755433 389999999999
Q ss_pred ccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC
Q psy16607 550 SQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625 (677)
Q Consensus 550 ~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~ 625 (677)
.|++++|+.++++++....... ...++..+|.++. ..|++++|+.+|++++.+.+..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-------------------LLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-------------------HhCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998432211 2678889999998 9999999999999999875543
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHhcCCC
Q psy16607 626 ------GLSQNNLAVLEAREGHIERASTYLQAAAASSP------YLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 626 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~G~i 676 (677)
..++..+|.++...|++++|+.+|++++++.+ ....++..++.++...|+.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 56889999999999999999999999999843 3367899999999988864
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=4.8e-25 Score=211.23 Aligned_cols=200 Identities=14% Similarity=0.065 Sum_probs=145.9
Q ss_pred cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607 422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501 (677)
Q Consensus 422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 501 (677)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ ..+++.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555 5555556
Q ss_pred HHHHHHhhhcccccC-----------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607 502 SHVAILNALSTSVYN-----------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570 (677)
Q Consensus 502 ~~~~~l~~l~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p 570 (677)
|.++. .. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .+
T Consensus 80 g~~~~--------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~- 148 (217)
T 2pl2_A 80 SEAYV--------ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA--LE- 148 (217)
T ss_dssp HHHHH--------HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-
T ss_pred HHHHH--------HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cc-
Confidence 65555 45 9999999999999999999999999999999999999999999999999 67
Q ss_pred chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 571 NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 650 (677)
Q Consensus 571 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 650 (677)
+++.++.++|.++. ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 149 ~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 149 DTPEIRSALAELYL-------------------SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred cchHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 89999999999999 99999999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy16607 651 AAA 653 (677)
Q Consensus 651 ~al 653 (677)
++-
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 864
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=2.7e-24 Score=215.50 Aligned_cols=261 Identities=12% Similarity=0.045 Sum_probs=233.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH
Q psy16607 365 RVYIRLDQPIRAIDIGRNALDCYPNE-VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEV 443 (677)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 443 (677)
+..+..|++.+|+..++++...+|++ .+....++.+|...|++++|+..++. .+|....++..++..+...++.++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 45667899999999999988888876 46778899999999999999998866 255567888899999999999999
Q ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHH
Q psy16607 444 ALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV 521 (677)
Q Consensus 444 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~ 521 (677)
|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..++.++. ..|++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~--------~~g~~~~ 148 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--LECMAMTVQILL--------KLDRLDL 148 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHH--------HTTCHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHH--------HCCCHHH
Confidence 99999999986 699999999999999999999999999998 666 899999999998 9999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHH--HHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhh
Q psy16607 522 ALLFYRRLLQMGLYNAELFNNLA--LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSY 599 (677)
Q Consensus 522 A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 599 (677)
|+..|+++++.+|++.......+ .++...|++++|+.+|+++++ ..|+++.+++++|.++.
T Consensus 149 A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~--------------- 211 (291)
T 3mkr_A 149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHM--------------- 211 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH---------------
Confidence 99999999999999865444333 344456899999999999999 79999999999999999
Q ss_pred hHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCChHHHH
Q psy16607 600 LFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER-ASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 600 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 664 (677)
..|++++|+..|+++++.+|++++++.++|.++...|+.++ +..+++++++++|+++.+.-
T Consensus 212 ----~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 212 ----AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp ----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999999999976 57899999999999987654
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-24 Score=208.21 Aligned_cols=200 Identities=12% Similarity=0.034 Sum_probs=170.7
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 467 (677)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 468 CCFYS-----------QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 468 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
++... |++++|+..|+++++++|++ ..++..+|.++. ..|++++|+..|+++++.+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYA--------LLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH--------HcCChHHHHHHHHHHHhcc-cc
Confidence 88888 99999999999999999998 999999999998 9999999999999999999 99
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
+.++..+|.++...|++++|+..|+++++ .+|++..++..+|.++. ..|++++|+..|+
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALL-------------------LKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-------------------C------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HccCHHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999998 9999999999998
Q ss_pred HHH
Q psy16607 617 LAL 619 (677)
Q Consensus 617 ~al 619 (677)
++-
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 864
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=229.11 Aligned_cols=295 Identities=16% Similarity=0.170 Sum_probs=240.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcH
Q psy16607 323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D----IEAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEV 391 (677)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 391 (677)
....+..+|.++...|++++|+..|+++++..| + ..++..+|.++...|++++|+.++++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344456788888888888888888888888777 3 467788888888888888888888888766 23446
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCC--------------------hHHHH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEVAL 445 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 445 (677)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 678888888888889999988888888876542 4578888999999898 88899
Q ss_pred HHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhccccc
Q psy16607 446 LFYRRLLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVY 515 (677)
Q Consensus 446 ~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~ 515 (677)
.++++++.+ .+....++..+|.++...|++++|+.++++++...+.. ....++..+|.++. .
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------~ 239 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--------F 239 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--------H
Confidence 888888875 23345678899999999999999999999999887654 12348889999998 9
Q ss_pred CCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHH
Q psy16607 516 NDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAII 585 (677)
Q Consensus 516 ~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~~~~l~~~~~~ 585 (677)
.|++++|+..+++++...+.. ..++..+|.++...|++++|+.+|++++..... +....++..+|.++.
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~- 318 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT- 318 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-
Confidence 999999999999999776654 678999999999999999999999999985322 223678889999998
Q ss_pred hhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC------CChHHHHHHHHHHHHcCCHHH
Q psy16607 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIER 644 (677)
Q Consensus 586 ~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 644 (677)
..|++++|+.+|++++++.+ ....++..+|.++...|+...
T Consensus 319 ------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 319 ------------------ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp ------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ------------------HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999999999998743 235788999999999997643
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.3e-22 Score=222.09 Aligned_cols=330 Identities=12% Similarity=0.055 Sum_probs=276.6
Q ss_pred HHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q psy16607 312 AVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390 (677)
Q Consensus 312 ~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 390 (677)
++++++.+|.+...| ..++.. ...|++++|...|+++++..| +...|..++..+.+.|++++|...|++++...| +
T Consensus 2 le~al~~~P~~~~~w-~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAW-SILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp HHHHHHHCTTCHHHH-HHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred hhhHhhhCCCCHHHH-HHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 677888887665555 677774 788999999999999999999 899999999999999999999999999999999 6
Q ss_pred HHHHHHHHH-HHHHcCChhHHHH----HHHHHHHh---CcCCHHHHHHHHHHHHh---------CCChHHHHHHHHHHHH
Q psy16607 391 VTIMTEMAR-IFEGLNNMPMSVK----YYKLILKR---DATCMEAIACIGVNHFY---------NDQPEVALLFYRRLLQ 453 (677)
Q Consensus 391 ~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~ 453 (677)
.++|..++. +....|++++|.+ .|++++.. +|.+...|...+..... .|++++|..+|+++++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 788888885 4456788888776 78887764 56678888888887765 6889999999999998
Q ss_pred cCCCCH--HHHHHHHHH---------------------------------------------------------------
Q psy16607 454 MGLYNA--ELFNNLALC--------------------------------------------------------------- 468 (677)
Q Consensus 454 ~~~~~~--~~~~~la~~--------------------------------------------------------------- 468 (677)
.|... ..|......
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 45432 222111110
Q ss_pred HHHc------CC----HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc-------CCCHH-------HHHH
Q psy16607 469 CFYS------QQ----YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY-------NDQPE-------VALL 524 (677)
Q Consensus 469 ~~~~------g~----~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~-------~~~~~-------~A~~ 524 (677)
.+.. ++ ...++..|++++...|.+ +.+|+.++..+. . .|+++ +|+.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~--~~~w~~~~~~~~--------~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH--PDIWYEAAQYLE--------QSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH--------HHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhchhhhhccchhhhhhhhHHHHH
Confidence 0000 11 136678899999999998 999999999986 4 68887 9999
Q ss_pred HHHHHHH-cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHhhcCCCCcccchhhhHH
Q psy16607 525 FYRRLLQ-MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA-DVWYNISHVAIITECSPFSFSTHTSYLFI 602 (677)
Q Consensus 525 ~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~l~~~~~~~~~~p~~~~~~~~~~~l 602 (677)
.|+++++ ..|++..+|..++.++...|++++|...|+++++ ..|.++ .+|..++.++.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~------------------ 367 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFAR------------------ 367 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHH------------------
Confidence 9999997 8999999999999999999999999999999999 788775 68999999988
Q ss_pred hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607 603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI 676 (677)
Q Consensus 603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i 676 (677)
+.|++++|+..|+++++..|.....+...+.+ +...|++++|+.+|+++++..|+++.+|..++.++...|++
T Consensus 368 -~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 368 -RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp -HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred -HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999888887777766 34699999999999999999999999999999999888864
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=6.3e-24 Score=224.66 Aligned_cols=273 Identities=14% Similarity=0.116 Sum_probs=189.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------CcCCHHHHHHH
Q psy16607 362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKR------DATCMEAIACI 431 (677)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 431 (677)
.+|..+...|++++|+..|+++++..|.+. .++..+|.++...|++++|+.+|++++.. .+....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444444444444444444444433 23444444444444444444444444444 23334455555
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhh
Q psy16607 432 GVNHFYNDQPEVALLFYRRLLQM------GLYNAELFNNLALCCFYSQQ-----------------YDMVVTCFERALSL 488 (677)
Q Consensus 432 a~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~ 488 (677)
|.++...|++++|+.++++++.. .+....++..+|.++...|+ +++|+.++++++.+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554 23345566777777777777 77777777777765
Q ss_pred hccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhccCHHHHHH
Q psy16607 489 ALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 489 ~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~ 558 (677)
.+.. ....++..+|.++. ..|++++|+.+++++++..+... .++..+|.++...|++++|+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYY--------LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4221 23568899999998 99999999999999998766543 388999999999999999999
Q ss_pred HHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC------hHH
Q psy16607 559 CFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH------GLS 628 (677)
Q Consensus 559 ~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~------~~~ 628 (677)
+|++++...... ....++..+|.++. ..|++++|+.++++++.+.+.. ..+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYT-------------------LLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999843221 23578889999998 9999999999999999875433 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 629 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
+..+|.++...|++++|+.+|++++++.+....
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 899999999999999999999999999876543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=9.5e-24 Score=225.58 Aligned_cols=328 Identities=12% Similarity=0.004 Sum_probs=241.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCHHHHHHHHHHHHHcC
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLI---REAQQQFNSALNQFTDIEAFIRMIRVYIRLD 371 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~la~~~~~~g 371 (677)
++..+++.|++++|+.+|+++.+.. . ...++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~--~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-Y--SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-C--CTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence 3455667899999999999998875 2 23336899999999998 9999999999977 7888999999777766
Q ss_pred -----ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH---HHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH
Q psy16607 372 -----QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS---VKYYKLILKRDATCMEAIACIGVNHFYNDQPEV 443 (677)
Q Consensus 372 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 443 (677)
++++|+.+|+++++.. ++.+++.+|.+|...+...++ .+.+.++.. +.++.+++.+|.+|...+.+++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCccc
Confidence 7899999999999854 455899999999988765544 444444433 3457889999999999986665
Q ss_pred HHHH----HHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607 444 ALLF----YRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516 (677)
Q Consensus 444 A~~~----~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~ 516 (677)
+... ++.+... ++.+++.+|.+|...| ++++|+..|+++.+..+.. ...++++|.++. ... ...
T Consensus 160 ~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~--a~~~~~Lg~~y~-~g~---~~~ 230 (452)
T 3e4b_A 160 HLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT--AQRVDSVARVLG-DAT---LGT 230 (452)
T ss_dssp GHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHT-CGG---GSS
T ss_pred CHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCC---CCC
Confidence 5554 4444333 3449999999999999 9999999999999998887 888899999985 000 123
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-H--HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALC-C--FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|+++.+ .+++.+++++|.+|.
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----~g~~~A~~~Lg~~y~--------- 294 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----ADQPRAELLLGKLYY--------- 294 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHH---------
Confidence 78999999999987 8899999999998 4 568899999999999986 458899999999884
Q ss_pred ccchhhhHHhcCC-----CHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 594 STHTSYLFIQGIS-----DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 594 ~~~~~~~~l~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
.| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+ +.++.+.+
T Consensus 295 -----------~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~ 358 (452)
T 3e4b_A 295 -----------EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADF 358 (452)
T ss_dssp -----------HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHH
T ss_pred -----------cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHH
Confidence 44 8999999999988 8889999999988877 3489999999999876 56688899
Q ss_pred HHHHHHHh
Q psy16607 665 NQAVISNL 672 (677)
Q Consensus 665 ~la~~~~~ 672 (677)
+||.+|..
T Consensus 359 ~Lg~~y~~ 366 (452)
T 3e4b_A 359 AIAQLFSQ 366 (452)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988874
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=1.4e-23 Score=214.61 Aligned_cols=274 Identities=14% Similarity=0.117 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------CcCCHHHH
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKR------DATCMEAI 428 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 428 (677)
.+...|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 455566666777777777777777777666653 45666777777777777777777776665 33345667
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q psy16607 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQ--------------------YDMVVTCF 482 (677)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~ 482 (677)
..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 777777777777777777777777654432 3477888888888888 88888888
Q ss_pred HHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccC
Q psy16607 483 ERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQ 552 (677)
Q Consensus 483 ~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 552 (677)
++++...+.. ....++..+|.++. ..|++++|+..++++++..+.. ..++..+|.++...|+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHY--------LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 8887763221 23668889999998 8999999999999999765433 3489999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC---
Q psy16607 553 YDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH--- 625 (677)
Q Consensus 553 ~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~--- 625 (677)
+++|+.++++++....... ...++..+|.++. ..|++++|+.++++++...+..
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-------------------LLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999998432211 2577889999998 9999999999999999875533
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 626 ---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 626 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
..++..+|.++...|++++|..+|++++++.+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4588899999999999999999999999988764
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=7.1e-23 Score=216.54 Aligned_cols=270 Identities=15% Similarity=0.165 Sum_probs=185.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DI----EAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEVTIMTE 396 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 396 (677)
..+|..+...|++++|+..|+++++..| +. .++..+|.++...|++++|+..++++++. .|....++..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3445555555555555555555555544 22 34555555555555555555555555544 2334455556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHh------CcCCHHHHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q psy16607 397 MARIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQ-----------------PEVALLFYRRLLQ 453 (677)
Q Consensus 397 la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~ 453 (677)
+|.++...|++++|+.+|++++.. .+....++..+|.++...|+ +++|+.++++++.
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666666555 33345566666666666666 6666666666655
Q ss_pred cC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHH
Q psy16607 454 MG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVAL 523 (677)
Q Consensus 454 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~ 523 (677)
+. +....++..+|.++...|++++|+.++++++...+.. ....++..+|.++. ..|++++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~ 283 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI--------FLGQFEDAA 283 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------TTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--------HCcCHHHHH
Confidence 42 2234577788888888888888888888888776653 12337788888887 889999999
Q ss_pred HHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 524 LFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 524 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
..|++++...+.. ..++..+|.++...|++++|+.+|++++..... +....++..+|.++.
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------- 354 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS--------- 354 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH---------
Confidence 9999888766533 678899999999999999999999999985322 233568889999998
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
..|++++|+.+|++++++.+.
T Consensus 355 ----------~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 355 ----------AIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHCCH
T ss_pred ----------HhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999998764
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=6.4e-23 Score=199.75 Aligned_cols=219 Identities=16% Similarity=0.138 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
+..++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|++++...|.+ ..++..++.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA--ATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--hHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666655 6666666666
Q ss_pred HHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
+. ..|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++. ..|++..++..+|.++.
T Consensus 101 ~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 101 YV--------VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLA 170 (243)
T ss_dssp HH--------HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HH--------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 65 666666666666666666666666667777777777777777777777776 66777777777777777
Q ss_pred HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607 585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664 (677)
Q Consensus 585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 664 (677)
..|++++|+..+++++...|.++.++..+|.++...|++++|+.+|+++++++|++..++.
T Consensus 171 -------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 171 -------------------NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp -------------------HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred -------------------HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 7777777777777777777777777777777777777777888888887777777777777
Q ss_pred HHHHHHHhcC
Q psy16607 665 NQAVISNLVS 674 (677)
Q Consensus 665 ~la~~~~~~G 674 (677)
.++.+....|
T Consensus 232 ~~~~l~~~~~ 241 (243)
T 2q7f_A 232 AKKLLGHHHH 241 (243)
T ss_dssp HHTC------
T ss_pred HHHHHHhhcc
Confidence 7766655443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=1.3e-21 Score=194.50 Aligned_cols=234 Identities=10% Similarity=0.091 Sum_probs=184.5
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELF 462 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 462 (677)
+|.++.+++.+|.++...|++++|+.+|+++++ |.+..+++.+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 356677777777777777888888888877777 5667777778887777 778888888888877764 67778
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc----CCCHHHHHHHHHHHHHcCC
Q psy16607 463 NNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY----NDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 463 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~----~~~~~~A~~~~~~al~~~p 534 (677)
+.+|.+|.. .+++++|+.+|+++++.. + ..+++.+|.++. . .+++++|+.+|+++++.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~~~--------~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y--AEGCASLGGIYH--------DGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHH--------HCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C--ccHHHHHHHHHH--------cCCCcccCHHHHHHHHHHHHhcC-
Confidence 888888888 888888888888887763 3 777888888876 6 788888888888888765
Q ss_pred CcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc----CC
Q psy16607 535 YNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG----IS 606 (677)
Q Consensus 535 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g 606 (677)
++.++..+|.++.. .+++++|+.+|+++++ . +++.+++.+|.+|. . .+
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~~~-------------------~g~~~~~ 200 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--L--KDSPGCFNAGNMYH-------------------HGEGATK 200 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T--TCHHHHHHHHHHHH-------------------HTCSSCC
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHH-------------------cCCCCCc
Confidence 56778888888887 8888888888888887 3 45678888888887 7 88
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607 607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETH 663 (677)
Q Consensus 607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 663 (677)
++++|+.+|+++++..| +.+++.+|.++.. .+++++|+.+|++++++.|++...+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999888765 7788889999988 8899999999999999888665443
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=1e-22 Score=208.06 Aligned_cols=270 Identities=16% Similarity=0.187 Sum_probs=201.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT-D----IEAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEVTIMTE 396 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 396 (677)
+..|..+...|++++|+..|+++++..| + ..++..+|.++...|++++|+..+++++.. .|....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4566677777777777777777776665 2 356667777777777777777777776655 2334556777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCC--------------------hHHHHHHHHH
Q psy16607 397 MARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEVALLFYRR 450 (677)
Q Consensus 397 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 450 (677)
+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|+.++++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7777777777777777777777665432 3467777777777777 7777777777
Q ss_pred HHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607 451 LLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPE 520 (677)
Q Consensus 451 al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~ 520 (677)
++.. .+....++..+|.++...|++++|+.++++++...+.. ....++..+|.++. ..|+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~ 240 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--------FLGEFE 240 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------HHTCHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--------HcCCHH
Confidence 7664 22334578888999999999999999999988776543 12347888888887 889999
Q ss_pred HHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCC
Q psy16607 521 VALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSP 590 (677)
Q Consensus 521 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p 590 (677)
+|+..+++++...+.. ..++..+|.++...|++++|+.++++++...... ....++..+|.++.
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~------ 314 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT------ 314 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH------
Confidence 9999999998765544 6788999999999999999999999999853222 22567889999998
Q ss_pred CCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
..|++++|+.++++++++.+.
T Consensus 315 -------------~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 315 -------------ALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp -------------HHTCHHHHHHHHHHHHHC---
T ss_pred -------------HcCChHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=1.3e-22 Score=201.55 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=134.6
Q ss_pred HcCCHHHHHHHHHHHHccC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16607 336 SLGLIREAQQQFNSALNQF----T-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS 410 (677)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~----p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (677)
..|++++|+..|+++++.. | +..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 3455555555555555542 1 3444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 411 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 411 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
+.+|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+.......+.+ ..
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~------------------- 156 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ------------------- 156 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-------------------
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-------------------
Confidence 5555555555555445555555555555555555555555554444444333322222 23
Q ss_pred ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607 491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570 (677)
Q Consensus 491 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p 570 (677)
.|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++. ..|
T Consensus 157 -------------------------~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~~~ 208 (275)
T 1xnf_A 157 -------------------------KLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT--DNT 208 (275)
T ss_dssp -------------------------HHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC--SHH
T ss_pred -------------------------hcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc--ccc
Confidence 35555555555555555544433332 44455555666666666666665 333
Q ss_pred ----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH
Q psy16607 571 ----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 646 (677)
Q Consensus 571 ----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 646 (677)
.+..++..+|.++. ..|++++|+..|++++..+|++... .+.++...|++++|+
T Consensus 209 ~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYL-------------------SLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC-
T ss_pred cccccccHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhH
Confidence 33677888888887 8888888888888888888766443 366777888888888
Q ss_pred HHH
Q psy16607 647 TYL 649 (677)
Q Consensus 647 ~~~ 649 (677)
..+
T Consensus 267 ~~~ 269 (275)
T 1xnf_A 267 DDL 269 (275)
T ss_dssp ---
T ss_pred HHH
Confidence 776
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.6e-22 Score=196.87 Aligned_cols=213 Identities=13% Similarity=0.166 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666655555566666666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~ 516 (677)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+ ..++..+|.++. ..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~ 172 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLA--------NE 172 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHH--------Hc
Confidence 66666666666666655555555555555555555555555555555555555554 555555555554 55
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~ 581 (677)
|++++|+..++++++..|.++.++..+|.++...|++++|+.+|+++++ .+|++..++..++.
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAKKL 235 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555 44555444444443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=1.5e-21 Score=191.27 Aligned_cols=210 Identities=18% Similarity=0.092 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
+.+++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|++++...|.+ ..++..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555666666666666665555555 5556666666
Q ss_pred HHHhhhcccccCCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607 505 AILNALSTSVYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582 (677)
Q Consensus 505 ~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~ 582 (677)
+. ..|++++|+..+++++. ..|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..+|.+
T Consensus 115 ~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 115 LY--------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADL 184 (252)
T ss_dssp HH--------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHH
T ss_pred HH--------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHH
Confidence 55 56666666666666665 5566667777777777777888888888888877 677777788888888
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
+. ..|++++|+..++++++..|.+..++..++.++...|++++|..+++++++..|+++.+
T Consensus 185 ~~-------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 185 LY-------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HH-------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HH-------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77 88888888888888888888888888888888888888888888888888888888776
Q ss_pred HHH
Q psy16607 663 HYN 665 (677)
Q Consensus 663 ~~~ 665 (677)
...
T Consensus 246 ~~~ 248 (252)
T 2ho1_A 246 QEF 248 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=5.9e-23 Score=204.04 Aligned_cols=249 Identities=8% Similarity=-0.082 Sum_probs=209.6
Q ss_pred HhcccCHHHHHHHHHHHHhhCc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607 299 YHHENDVASAMDLAVESTKACE---FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI 374 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 374 (677)
....|++++|+..++++++..+ +.....++.+|.++...|++++|+..|+++++..| +..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456999999999999998742 34456668999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
+|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|.+......++.. ...|++++|+..+++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998766666544 6669999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532 (677)
Q Consensus 455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~ 532 (677)
.|.+...+. ++.++...++.++|+..+++++...|.. ....++..+|.++. ..|++++|+..|++++..
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL--------SLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTT
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhC
Confidence 888766654 7777888899999999999998887643 12567778888887 788888888888888888
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607 533 GLYNAELFNNLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~ 560 (677)
+|.+... .+.++...|++++|+..|
T Consensus 245 ~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTCHH---HHHHHHHHHHHHHC----
T ss_pred CchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 7766433 366777777777777766
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=3.2e-21 Score=185.05 Aligned_cols=214 Identities=13% Similarity=0.054 Sum_probs=134.3
Q ss_pred cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607 422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501 (677)
Q Consensus 422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 501 (677)
|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+ ..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555554 5555555
Q ss_pred HHHHHHhhhcccccC-CCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHH
Q psy16607 502 SHVAILNALSTSVYN-DQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578 (677)
Q Consensus 502 ~~~~~l~~l~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 578 (677)
|.++. .. |++++|+..++++++ ..|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..
T Consensus 83 ~~~~~--------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 152 (225)
T 2vq2_A 83 GWFLC--------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKE 152 (225)
T ss_dssp HHHHH--------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred HHHHH--------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHH
Confidence 55555 55 555555555555555 4455566666677777777777777777777776 56666777777
Q ss_pred HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS-SHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
+|.++. ..|++++|+..+++++...| .+..++..++.++...|+.++|..+++.+.+.+|
T Consensus 153 la~~~~-------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 153 LARTKM-------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHH-------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 777776 77777777777777777777 7777777777777777777777777777777777
Q ss_pred CChHHHHHH
Q psy16607 658 YLYETHYNQ 666 (677)
Q Consensus 658 ~~~~~~~~l 666 (677)
+++.+...+
T Consensus 214 ~~~~~~~~l 222 (225)
T 2vq2_A 214 YSEELQTVL 222 (225)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 777665443
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=7.8e-22 Score=183.48 Aligned_cols=178 Identities=15% Similarity=0.234 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
+++.+|+++|.+|...|++++|+..|+++++++|++ ..++..+|.++. ..|++++|+..+.+++...|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~--------~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN--VETLLKLGKTYM--------DIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCchh
Confidence 467788888888888888888888888888888887 888888888887 8888889998888888888988
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
+.++..+|.++...++++.|+..+.+++. ..|.+..++..+|.++. ..|++++|+..|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYD-------------------SMGEHDKAIEAYE 131 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHH-------------------HhCCchhHHHHHH
Confidence 99999999999999999999999999998 88999999999999998 9999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 617 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 617 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
++++++|.++.++.++|.++..+|++++|+..|+++++++|+++ .+++|
T Consensus 132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a--~~~la 180 (184)
T 3vtx_A 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA--KYELA 180 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH--HHCSC
T ss_pred HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH--HHHHH
Confidence 99999999999999999999999999999999999999998763 34444
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.6e-21 Score=197.50 Aligned_cols=255 Identities=13% Similarity=0.033 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-hCcCCHHHHHHHHHHHHhC
Q psy16607 374 IRAIDIGRNALDCYPNEVTIMTEMARIFEG-------LNNM-------PMSVKYYKLILK-RDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 438 (677)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678888999999899999999888888763 5776 899999999999 6899999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCC
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~ 517 (677)
|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|.. ..+|...+.... ...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~-------~~~~ 183 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEY-------YCSK 183 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHH-------HTSC
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH-------HHcC
Confidence 9999999999999999998886 89999999999999999999999999988876 677766655532 0368
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-hcc-chHHHHHHHHHHHHHhhcCCCCccc
Q psy16607 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-LNE-NAADVWYNISHVAIITECSPFSFST 595 (677)
Q Consensus 518 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~p-~~~~~~~~l~~~~~~~~~~p~~~~~ 595 (677)
++++|+..|+++++.+|+++.+|..++..+...|++++|+.+|++++... ..| ....+|..++..+.
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~----------- 252 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES----------- 252 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-----------
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999999999831 245 36788888888887
Q ss_pred chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
..|++++|...++++++..|++..... ++.+ ....+.+.++|.+++++..||.
T Consensus 253 --------~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 253 --------NIGDLASILKVEKRRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp --------HHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred --------HcCCHHHHHHHHHHHHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 889999999999999999987653321 1111 1112667788999888876653
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.1e-20 Score=187.83 Aligned_cols=228 Identities=12% Similarity=0.143 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACI 431 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 431 (677)
++.+++.+|.++...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 455666666666666666666666666666 5556666666666666 666666666666666654 56666666
Q ss_pred HHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q psy16607 432 GVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISH 503 (677)
Q Consensus 432 a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 503 (677)
|.++.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. + ..+++.+|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--GDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c--HHHHHHHHH
Confidence 666666 666777777776666653 56666677777766 677777777777766654 2 556666666
Q ss_pred HHHHhhhccccc----CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607 504 VAILNALSTSVY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADV 575 (677)
Q Consensus 504 ~~~l~~l~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~ 575 (677)
++. . .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++ ..+ ..+
T Consensus 155 ~~~--------~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~--~~a 220 (273)
T 1ouv_A 155 LYD--------AGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LEN--GGG 220 (273)
T ss_dssp HHH--------HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTC--HHH
T ss_pred HHH--------cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCC--HHH
Confidence 665 4 66777777777777665 345666777777777 7777777777777766 332 566
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccCCCCh
Q psy16607 576 WYNISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSHG 626 (677)
Q Consensus 576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~ 626 (677)
++.+|.+|. . .+++++|+.+|+++++..|.++
T Consensus 221 ~~~l~~~~~-------------------~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 221 CFNLGAMQY-------------------NGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHH-------------------TTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHH-------------------cCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 677777766 6 6777777777777777666543
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=3.3e-21 Score=188.93 Aligned_cols=209 Identities=15% Similarity=0.096 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 470 (677)
+.++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607 471 YSQQYDMVVTCFERALS--LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 548 (677)
Q Consensus 471 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 548 (677)
..|++++|+.+|++++. ..|.+ ..++..+|.++. ..|++++|+..++++++..|.+..++..+|.++.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSL--------QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 66666666666666666 44444 566666666665 6666666666666666666666666666666666
Q ss_pred hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~ 628 (677)
..|++++|+.++++++. ..|.+...+..++.++. ..|++++|..+++++++..|+++.+
T Consensus 187 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAK-------------------VFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77777777777777666 56666666666666666 6777777777777777776666655
Q ss_pred HH
Q psy16607 629 QN 630 (677)
Q Consensus 629 ~~ 630 (677)
..
T Consensus 246 ~~ 247 (252)
T 2ho1_A 246 QE 247 (252)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=7.2e-21 Score=182.55 Aligned_cols=215 Identities=17% Similarity=0.018 Sum_probs=152.9
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 466 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 466 (677)
.|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45566666677777777777777777777777777766677777777777777777777777777777777777777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607 467 LCCFYS-QQYDMVVTCFERALS--LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL 543 (677)
Q Consensus 467 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 543 (677)
.++... |++++|+..+++++. ..|.. ..++..+|.++. ..|++++|+..++++++..|.++.++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 153 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSA--------KQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcch--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 777777 777777777777776 33443 666777777776 77777777777777777777777777777
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 544 ALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 544 a~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
|.++...|++++|+.++++++. ..| .+...+..++.++. ..|++++|..+++.+....
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQS--RVEVLQADDLLLGWKIAK-------------------ALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHH-------------------hcCcHHHHHHHHHHHHHhC
Confidence 7777777777777777777777 566 67777777777666 7777777777777777777
Q ss_pred CCChHHHHHH
Q psy16607 623 SSHGLSQNNL 632 (677)
Q Consensus 623 p~~~~~~~~l 632 (677)
|+++.+...+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 7776665433
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=8.7e-22 Score=211.72 Aligned_cols=214 Identities=13% Similarity=0.074 Sum_probs=183.8
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP-EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
+++++..+.+.....|.+..+++.+|.++...|++ ++|+..|+++++.+|.++.+|..+|.+|...|++++|+.+|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555666666666666777777777777777777 77777777777777777777777777777777777777788888
Q ss_pred HhhhcccchHHHHHHHHHHHHHhhhcccccC---------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------
Q psy16607 486 LSLALNENAADVWYNISHVAILNALSTSVYN---------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS------ 550 (677)
Q Consensus 486 l~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 550 (677)
++++|+ ..++..+|.++. .. |++++|+..|+++++.+|+++.+|+.+|.++...
T Consensus 164 l~~~p~---~~~~~~lg~~~~--------~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 164 LTHCKN---KVSLQNLSMVLR--------QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HTTCCC---HHHHHHHHHHHT--------TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhCCC---HHHHHHHHHHHH--------HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 777776 577788888876 77 9999999999999999999999999999999999
Q ss_pred --cCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC
Q psy16607 551 --QQYDMVVTCFERALSLALNE---NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625 (677)
Q Consensus 551 --g~~~~A~~~~~~al~~~~~p---~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~ 625 (677)
|++++|+.+|++++. .+| +++.+|+++|.++. ..|++++|+..|+++++++|++
T Consensus 233 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 233 NPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHK-------------------YEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp CHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 789 99999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 626 GLSQNNLAVLEAREGHIERASTYLQAA 652 (677)
Q Consensus 626 ~~~~~~la~~~~~~g~~~~A~~~~~~a 652 (677)
+.++..++.++...|++++|+..+.+.
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999876543
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=3.4e-21 Score=179.09 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 549 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 549 (677)
...++++.|+..+.+++...|.+ ..++..+|.++. ..|++++|+..|+++++.+|.++.+++.+|.++..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYD--------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHH--------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 77777777777777777777776 677777777776 77777777777777777777777777777777777
Q ss_pred ccCHHHHHHHHHHHHHHhhccchH
Q psy16607 550 SQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 550 ~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
.|++++|+.+|+++++ .+|+++
T Consensus 154 ~g~~~~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp TTCHHHHHHHHHHHHH--TTHHHH
T ss_pred CCCHHHHHHHHHHHHh--CCccCH
Confidence 7777777777777777 666554
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=3.7e-21 Score=201.49 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=187.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhC------cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-------CHH
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NAE 460 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~ 460 (677)
++.+|..+...|++++|+.+|++++.+. +....++..+|.++...|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3447777777777777777777777661 223567777777787888888888888777776432 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH-----
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ----- 531 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~----- 531 (677)
++..+|.+|...|++++|+.+|++++.+.+.. ....++.++|.++. ..|++++|+.+|+++++
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--------~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--------SQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHhh
Confidence 78888899999999999999999988876543 22458889999998 89999999999999998
Q ss_pred cC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC
Q psy16607 532 MG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607 (677)
Q Consensus 532 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~ 607 (677)
.+ |..+.++..+|.++...|++++|+.++++++.+.. ++.....+..++.++. ..|+
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~ 318 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-------------------SGPD 318 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------------SSCC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------------CCCc
Confidence 56 88889999999999999999999999999998543 2333344667888887 9999
Q ss_pred ---HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607 608 ---TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 608 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 658 (677)
+++|+..+++. ...|....++..+|.+|...|++++|..+|++++++...
T Consensus 319 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 319 EEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88888888887 334455678899999999999999999999999987643
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1.6e-21 Score=209.57 Aligned_cols=215 Identities=9% Similarity=0.037 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16607 338 GLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP-IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415 (677)
Q Consensus 338 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 415 (677)
+.+++++..+++.....| +..+++.+|.++...|++ ++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457888889998888887 899999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCcCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCHHHH
Q psy16607 416 LILKRDATCMEAIACIGVNHFYN---------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS--------QQYDMV 478 (677)
Q Consensus 416 ~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A 478 (677)
++++++|+ ..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.+|... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999998 79999999999999 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhhhc---ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q psy16607 479 VTCFERALSLAL---NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555 (677)
Q Consensus 479 ~~~~~~al~~~p---~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 555 (677)
+.+|+++++++| .+ ..+|+++|.++. ..|++++|+..|+++++.+|++..++..++.++...|++++
T Consensus 241 ~~~~~~al~~~p~~~~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSN--PDLHLNRATLHK--------YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHCGGGGGC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 77 999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy16607 556 VVTCFERA 563 (677)
Q Consensus 556 A~~~~~~a 563 (677)
|+..+.+.
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 99877654
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.8e-20 Score=189.90 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHc
Q psy16607 408 PMSVKYYKLILKRDATCMEAIACIGVNHFY-------NDQP-------EVALLFYRRLLQ-MGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~ 472 (677)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhcccchHH-HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-c
Q psy16607 473 QQYDMVVTCFERALSLALNENAAD-VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-S 550 (677)
Q Consensus 473 g~~~~A~~~~~~al~~~p~~~~~~-~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 550 (677)
|++++|...|+++++..|.+ .. +|..++.++. ..|++++|+..|+++++..|.+..+|...+.+... .
T Consensus 113 ~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~--------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFAR--------RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSC--THHHHHHHHHHHH--------HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhccccC--ccHHHHHHHHHHH--------HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999987 65 8999999988 89999999999999999999998888877776543 7
Q ss_pred cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc---CCC-Ch
Q psy16607 551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI---DSS-HG 626 (677)
Q Consensus 551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~---~p~-~~ 626 (677)
|++++|+.+|+++++ ..|+++.+|..++.++. ..|++++|+..|++++.. .|+ ..
T Consensus 183 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~-------------------~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 183 KDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLS-------------------HLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp CCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH-------------------TTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 999999999999999 78999999999999998 999999999999999995 553 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
.+|..++..+...|++++|..+++++++..|++.+
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 89999999999999999999999999999998654
No 61
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=1.1e-20 Score=201.76 Aligned_cols=314 Identities=11% Similarity=0.015 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHH---H
Q psy16607 306 ASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG-----LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRA---I 377 (677)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A---~ 377 (677)
++|+.+|+++++. ....++.+|.++...| ++++|+.+|+++++..+ ..+++.+|.+|...+...++ .
T Consensus 55 ~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 55 KQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 7888888888855 2233367788666655 77888888888877543 33778888888877654443 4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHH----HHHHHHhCcCCHHHHHHHHHHHHhCC---ChHHHHHHHHH
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY----YKLILKRDATCMEAIACIGVNHFYND---QPEVALLFYRR 450 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 450 (677)
..+.++.. +.++.+++.+|.+|...+.++++... ++.+...+| .+++.+|.+|...| ++++|+.+|++
T Consensus 130 ~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 130 QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 44444333 23467788888888888765555444 444433333 47888888888888 88888888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607 451 LLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY 526 (677)
Q Consensus 451 al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~ 526 (677)
+.+..+.....++++|.+|... +++++|+.+|+++. |.+ +.+++++|.++.- . ...+++++|+.+|
T Consensus 205 aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~-~----~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 205 GVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY--PASWVSLAQLLYD-F----PELGDVEQMMKYL 274 (452)
T ss_dssp HHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS--THHHHHHHHHHHH-S----GGGCCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHh-C----CCCCCHHHHHHHH
Confidence 8888888888888888888665 68888888888887 665 7888888887320 0 1567888888888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607 527 RRLLQMGLYNAELFNNLALCCFYSQ-----QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601 (677)
Q Consensus 527 ~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~ 601 (677)
+++.+.+ ++.+++++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.
T Consensus 275 ~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~----------------- 329 (452)
T 3e4b_A 275 DNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYR----------------- 329 (452)
T ss_dssp HHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHH-----------------
Confidence 8887553 7788888888887 44 8888888888875 677788888888875
Q ss_pred Hhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 602 IQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 602 l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
. ..++++|+.+|+++.+ +.++.+.++||.+|.. ..++.+|..+|+++.+..+ ..+...++.+.
T Consensus 330 --~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~ 400 (452)
T 3e4b_A 330 --RGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLE 400 (452)
T ss_dssp --TTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred --CCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence 3 3388888888888876 3567788888888774 4578888888888877553 44555555543
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=3.4e-20 Score=178.90 Aligned_cols=219 Identities=11% Similarity=0.059 Sum_probs=151.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 468 (677)
++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 445555566666666666666666666665555 5555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607 469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 548 (677)
Q Consensus 469 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 548 (677)
+...|++++|+..|+++++..|++ ...+..++ .++..+|.++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~-----------------------------------~~~~~~g~~~~ 128 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGN--ATIEKLYA-----------------------------------IYYLKEGQKFQ 128 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHH-----------------------------------HHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHH-----------------------------------HHHHHHhHHHH
Confidence 555555555555555555555554 33333332 45678999999
Q ss_pred hccCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607 549 YSQQYDMVVTCFERALSLALNEN--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~ 626 (677)
..|++++|+..|+++++ .+|+ +..++..+|.++. . .+...++++..+.+.+.
T Consensus 129 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~-------------------~-----~~~~~~~~a~~~~~~~~ 182 (228)
T 4i17_A 129 QAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFY-------------------N-----NGADVLRKATPLASSNK 182 (228)
T ss_dssp HTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHH-------------------H-----HHHHHHHHHGGGTTTCH
T ss_pred HhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHH-------------------H-----HHHHHHHHHHhcccCCH
Confidence 99999999999999999 8999 8999999999987 4 44556778888877665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV 673 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 673 (677)
..+ .+......+.+++|+.+|+++++++|++..+...++.+...+
T Consensus 183 ~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 183 EKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 443 444566778899999999999999999999999988876543
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=9.8e-21 Score=198.24 Aligned_cols=294 Identities=11% Similarity=0.083 Sum_probs=232.7
Q ss_pred HHhcccCHHHHHHHHHHHHhhCcC--CCHHH--HHH--HHHHHHHcCCHHHHH-----------HHHHHHHccCCC----
Q psy16607 298 LYHHENDVASAMDLAVESTKACEF--RDWWW--KVQ--LGKCYFSLGLIREAQ-----------QQFNSALNQFTD---- 356 (677)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~--~~~--la~~~~~~g~~~~A~-----------~~~~~al~~~p~---- 356 (677)
.++..+++++|..+++++.+..+. .+... ++. ..+.....+.++.+. ..++++-.....
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 356689999999999998765432 23222 122 222333344455555 555554332222
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-----
Q psy16607 357 --IEAFIRMIRVYIRLDQPIRAIDIGRNALDC---YPN---EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT----- 423 (677)
Q Consensus 357 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 423 (677)
...++.+|.++...|++++|+..++++++. .++ ...++..+|.++...|++++|+.++++++++.+.
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 234455999999999999999999999987 233 4578999999999999999999999999998543
Q ss_pred --CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----h-
Q psy16607 424 --CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSL-----A- 489 (677)
Q Consensus 424 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~- 489 (677)
...++..+|.++...|++++|+.+|++++.+.+.. ..++.++|.+|...|++++|+.+|++++.+ +
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 35688999999999999999999999999875433 258999999999999999999999999984 3
Q ss_pred cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHhccC---HHHHHHHHH
Q psy16607 490 LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQ---YDMVVTCFE 561 (677)
Q Consensus 490 p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 561 (677)
|.. ..++..+|.++. ..|++++|+.++++++.. +|.....+..+|.++...|+ +++|+..++
T Consensus 261 ~~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 261 PSL--PQAYFLITQIHY--------KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp GGH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444 889999999998 999999999999999976 34444456789999999999 788888887
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 562 ~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
+.- ..+....++..+|.+|. ..|++++|+.+|++++++..
T Consensus 331 ~~~---~~~~~~~~~~~la~~y~-------------------~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 331 SKM---LYADLEDFAIDVAKYYH-------------------ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTT---CHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHT
T ss_pred HCc---CHHHHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHHH
Confidence 762 45667788999999999 99999999999999998643
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=6.5e-20 Score=176.87 Aligned_cols=217 Identities=10% Similarity=0.028 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 434 (677)
++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 678999999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~ 514 (677)
+...|++++|+..++++++..|.++..+..+ ..++..+|.++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----------------------------~~~~~~~g~~~~-------- 128 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLY-----------------------------AIYYLKEGQKFQ-------- 128 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH-----------------------------HHHHHHHHHHHH--------
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHH-----------------------------HHHHHHHhHHHH--------
Confidence 9999999999999999999999998765544 345667788877
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607 515 YNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
..|++++|+..|+++++.+|+ ++.++..+|.++...|+ ..++++.. ..+.....+. +....
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~--~~~~~~~~~~--~~~~~-------- 191 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATP--LASSNKEKYA--SEKAK-------- 191 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGG--GTTTCHHHHH--HHHHH--------
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHh--cccCCHHHHH--HHHHH--------
Confidence 899999999999999999999 99999999999987654 44556655 3343333332 22233
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 637 (677)
..+.+++|+.+|+++++++|+++.+...++.+..
T Consensus 192 -----------~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 192 -----------ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 6678999999999999999999999888887754
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=193.73 Aligned_cols=251 Identities=17% Similarity=0.163 Sum_probs=182.9
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---- 454 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 454 (677)
+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777777777777777777774 4555677777778888888888888888777765
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----ccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607 455 ----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNE-NAADVWYNISHVAILNALSTSVYNDQPEVALL 524 (677)
Q Consensus 455 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~ 524 (677)
.+....++..+|.++...|++++|+.+|++++... +++ ....++..+|.++. ..|++++|+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~~A~~ 174 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--------NQGKYEEVEY 174 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--------TTTCHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--------HcCCHHHHHH
Confidence 24456678888888888888888888888888774 111 23788999999998 9999999999
Q ss_pred HHHHHHHc--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHhhcC
Q psy16607 525 FYRRLLQM--------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-------NENAADVWYNISHVAIITECS 589 (677)
Q Consensus 525 ~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~p~~~~~~~~l~~~~~~~~~~ 589 (677)
++++++.. .|....++..+|.++...|++++|+.+|++++.... .+.....+...+....
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 249 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE----- 249 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-----
Confidence 99999987 777788999999999999999999999999998421 1222223333333322
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 658 (677)
....+...+.+.+|+..++++....|....++..+|.++...|++++|+.+|++++++.|+
T Consensus 250 --------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 250 --------CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------C-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------hcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0012226677778888999999888999999999999999999999999999999999875
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=9.5e-21 Score=211.36 Aligned_cols=172 Identities=18% Similarity=0.163 Sum_probs=112.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
.|+++++++++|.++..+|++++|+.+|+++++++|++ ..+++++|.++. ..|++++|+..|+++++++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--~~a~~nLg~~l~--------~~g~~~eA~~~~~~Al~l~P 74 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQ--------QQGKLQEALMHYKEAIRISP 74 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCC
Confidence 35555666666666666666666666666666666665 666666666665 66666666666666666666
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~ 614 (677)
+++.+++++|.++..+|++++|+++|+++++ .+|++..+|+++|.+|. .+|++++|+..
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~-------------------~~g~~~eAi~~ 133 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHK-------------------DSGNIPEAIAS 133 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHH
Confidence 6666666666666666666666666666666 56666666666666666 66666666666
Q ss_pred HHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 615 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
|+++++++|+++.++.++|.++...|++++|.+.|++++++.|
T Consensus 134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 6666666666666666666666666666666666666666544
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=2.9e-20 Score=207.50 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=119.7
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 466 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 466 (677)
.|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|+++.+++++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607 467 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 546 (677)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 546 (677)
.++..+|++++|+++|+++++++|++ ..+++++|.++. ..|++++|+..|+++++++|+++.++.++|.+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~--------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHK--------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 77777777777777777777777766 667777777766 66777777777777777777777777777777
Q ss_pred HHhccCHHHHHHHHHHHHH
Q psy16607 547 CFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 547 ~~~~g~~~~A~~~~~~al~ 565 (677)
+...|++++|++.++++++
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 7777777777777777766
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.6e-18 Score=196.18 Aligned_cols=308 Identities=10% Similarity=0.070 Sum_probs=204.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHH
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIR 375 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~ 375 (677)
+.++...|.+++|..+|+++.... ..+...+...|++++|.++++++ ..+.+|+.+|.++...|++++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~--------~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNT--------SAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHH--------HHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHH
Confidence 555566677777777776652100 11222333566666666666654 246677777777777777777
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455 (677)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (677)
|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. .
T Consensus 1124 AIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----N 1191 (1630)
T ss_pred HHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----h
Confidence 77777664 56667777777777777777777777777766543 2222346667777766663 33331 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535 (677)
Q Consensus 456 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~ 535 (677)
..+...+..+|..+...|+|++|+.+|.++ ..|..++.++. +.|++++|++.++++ .
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLv--------kLge~q~AIEaarKA-----~ 1248 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLV--------HLGEYQAAVDGARKA-----N 1248 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHH--------HhCCHHHHHHHHHHh-----C
Confidence 223345556777777777777777777764 24666777776 677777777777776 4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~ 615 (677)
+..+|...+.++...|+|..|..+... +. . +++.+..++..|. ..|.+++|+.++
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-Ii--v---~~deLeeli~yYe-------------------~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-IV--V---HADELEELINYYQ-------------------DRGYFEELITML 1303 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-hh--c---CHHHHHHHHHHHH-------------------HcCCHHHHHHHH
Confidence 456777777777777777777766653 22 2 2333446666666 889999999999
Q ss_pred HHHHccCCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCC
Q psy16607 616 HLALSIDSSHGLSQNNLAVLEARE--GHIERASTYLQAAAASSP-----YLYETHYNQAVISNLVSV 675 (677)
Q Consensus 616 ~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~G~ 675 (677)
++++.+++.+...+..+|.++.+- ++..++++.|...+.+.| ++...|..+..+|.+.|+
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 999998888888888888877664 678888888888888777 777888888888877765
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=1.1e-18 Score=173.35 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHc---CCHHHH
Q psy16607 408 PMSVKYYKLILKRDATCMEAIACIGVNHFYND--QPEVALLFYRRLLQMGLYNAELFNNLALCC----FYS---QQYDMV 478 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~~~A 478 (677)
++|+..+.+++.++|++..+|...+.++...+ ++++++.+++.++..+|.+..+|+..+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 46666666666666666666666666666666 666666666666666666666666666666 444 566677
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH--HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC----
Q psy16607 479 VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE--VALLFYRRLLQMGLYNAELFNNLALCCFYSQQ---- 552 (677)
Q Consensus 479 ~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---- 552 (677)
+.++.++++.+|.+ ..+|...+.+.. ..+.++ ++++++.++++.+|.+..+|..++.++...++
T Consensus 130 L~~~~~~l~~~pkn--y~aW~~R~~vl~--------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 130 FDILEAMLSSDPKN--HHVWSYRKWLVD--------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 77777777777776 677777776666 566666 77777777777777777777777777777666
Q ss_pred --HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH-HHHHHHHHHccC---CCCh
Q psy16607 553 --YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL-AIQCLHLALSID---SSHG 626 (677)
Q Consensus 553 --~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~-A~~~~~~al~~~---p~~~ 626 (677)
++++++++++++. .+|++..+|+.++.++. ..|+..+ ...++.+++.++ |.++
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHE-------------------RFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHH-------------------HTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHH-------------------hcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 7788888888887 77888888888877776 6666444 445666666665 6777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAA-SSPYLYETHYNQAV 668 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~ 668 (677)
.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 8888888888888888888888888886 68888877776654
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=5e-19 Score=184.83 Aligned_cols=236 Identities=12% Similarity=0.065 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCc------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-------CH
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDA------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NA 459 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~ 459 (677)
.++.+|..+...|++++|+.+|++++.+.+ ....++..+|.++...|++++|+.++++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 345566666677777777777777666532 23456677777777777777777777777765332 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH----
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ---- 531 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~---- 531 (677)
.++..+|.+|...|++++|+.+|++++.+.+.. ....++.++|.++. ..|++++|+.++++++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--------~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD--------RSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888888888764421 23567888999988 88999999999999998
Q ss_pred -cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC
Q psy16607 532 -MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607 (677)
Q Consensus 532 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~ 607 (677)
.+|....++..+|.++...|++++|+.++++++.... ++.....+..++.++. ..++
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~-------------------~~~~ 315 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK-------------------ETVD 315 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS-------------------SSCC
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------------CCCc
Confidence 7888889999999999999999999999999999542 3444555677777776 8888
Q ss_pred ---HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 608 ---TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 608 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
+.+|+..+++. ...+....++..+|.+|...|++++|..+|+++++..
T Consensus 316 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 316 ERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88899888873 3334456788899999999999999999999998864
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=187.13 Aligned_cols=238 Identities=16% Similarity=0.129 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-------
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--------YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR------- 420 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 420 (677)
...++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+|++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455556666666666666666666666553 4445556666777777777777777777776665
Q ss_pred -CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q psy16607 421 -DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAELFNNLALCCFYSQQYDMVVTCFERALSL--- 488 (677)
Q Consensus 421 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 488 (677)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+|++++..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 24456677777777777777777777777777653 445567888888888889999999999888887
Q ss_pred -----hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC---------c------HHHHHHHHHHHH
Q psy16607 489 -----ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---------N------AELFNNLALCCF 548 (677)
Q Consensus 489 -----~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~ 548 (677)
.|.. ..++..+|.++. ..|++++|+..++++++..+. . ...+..++..+.
T Consensus 186 ~~~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 186 KLGPDDPNV--AKTKNNLASCYL--------KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp TSCTTCHHH--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HhCCCCHHH--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 4443 778999999998 999999999999999975432 2 233444555566
Q ss_pred hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~ 624 (677)
..+.+.+|+..++++.. ..|....++..+|.++. ..|++++|+.+|++++++.|.
T Consensus 256 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYR-------------------RQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCSCCCC-----------CHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHhhc
Confidence 67777888889999988 78899999999999999 999999999999999988764
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=8.4e-18 Score=190.30 Aligned_cols=309 Identities=14% Similarity=0.146 Sum_probs=257.1
Q ss_pred cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
..+++++|+++++++ +....++.+|.++...|++++|+..|.++ .+...+..++.++.+.|++++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 457777777777755 23334479999999999999999999886 67889999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH
Q psy16607 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 460 (677)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 460 (677)
..+.+..+ ++.+...+|.+|.+.+++++ ++.|. ...+...+..+|..+...|++++|..+|.++ .
T Consensus 1158 ~mArk~~~-e~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ 1222 (1630)
T 1xi4_A 1158 QMARKKAR-ESYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S 1222 (1630)
T ss_pred HHHHhhcc-cccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------h
Confidence 99998875 33344469999999999885 44442 2335567778999999999999999999996 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 540 (677)
.|..++.++.++|++++|+++++++ .+ ..+|...+.++. ..|++..|..+... +.. +++.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n--~~aWkev~~acv--------e~~Ef~LA~~cgl~-Iiv---~~deL 1283 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NS--TRTWKEVCFACV--------DGKEFRLAQMCGLH-IVV---HADEL 1283 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CC--HHHHHHHHHHHh--------hhhHHHHHHHHHHh-hhc---CHHHH
Confidence 8999999999999999999999999 23 788999999998 89999999998875 433 45566
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
..++..|...|.|++|+.++++++. .++.+...+..++.+|. .++-++..++++.|...+.
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLya-----------------Ky~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYS-----------------KFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHH-----------------hCCHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999 88999999999998885 3367788899999999988
Q ss_pred cCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHh
Q psy16607 621 IDS-----SHGLSQNNLAVLEAREGHIERASTYLQAAAAS------------SPYLYETHYNQAVISNL 672 (677)
Q Consensus 621 ~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~ 672 (677)
+.| .+...|..+..+|.+.|+++.|+...-+.... .+.+++.+|.....|..
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 877 67889999999999999999999554444333 67888988887776653
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=3.3e-18 Score=170.07 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=208.9
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHhCcCCHHHHHHHHHHH----HhC---CChH
Q psy16607 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN--NMPMSVKYYKLILKRDATCMEAIACIGVNH----FYN---DQPE 442 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~ 442 (677)
..++|+..+.+++.++|++..+|...+.++..+| ++++++.++.+++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3468999999999999999999999999999998 999999999999999999999999998888 666 7899
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC--
Q psy16607 443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD--MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ-- 518 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~-- 518 (677)
+++.+++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+ ..+|...+.+.. ..+.
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~--------~l~~~~ 197 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFLLF--------SKKHLA 197 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------SSGGGC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------hccccc
Confidence 9999999999999999999999999999999988 9999999999999998 999999999987 6666
Q ss_pred ----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHh-hccchHHHHHHHHHHHHHhhcCCCC
Q psy16607 519 ----PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM-VVTCFERALSLA-LNENAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 519 ----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-~~p~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
++++++++++++..+|.+..+|+.++.++...|+..+ ...++++++.+. .++..+.++..++.++.
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~-------- 269 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT-------- 269 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH--------
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH--------
Confidence 8999999999999999999999999999999998655 445667676621 13788899999999998
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHc-cCCCChHHHHHHHHH
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALS-IDSSHGLSQNNLAVL 635 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~ 635 (677)
+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 270 -----------~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 270 -----------QQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp -----------HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred -----------ccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 99999999999999996 899999888877654
No 74
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.4e-20 Score=192.53 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=167.8
Q ss_pred hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy16607 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDI 379 (677)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~ 379 (677)
.+.|+.++|.+++++.- .+ ..| ..+|.++...|++++|++.|.++ ++...+..++..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~~----~~-~vW-s~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN----EP-AVW-SQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC----Ch-HHH-HHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34689999999999982 22 244 69999999999999999999774 5667889999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH
Q psy16607 380 GRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA 459 (677)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 459 (677)
++.+.+..+ ++.+...++.+|.+.|++.++.++++. | +..+|..+|..+...|++++|..+|.++
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 999888644 477888999999999999999988853 4 4469999999999999999999999977
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL 539 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 539 (677)
..|..+|.++.++|++++|++.++++ .+ +.+|...+.++. ..|+++.|..+... +...|+ -
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~--~~~Wk~v~~aCv--------~~~ef~lA~~~~l~-L~~~ad---~ 209 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NS--TRTWKEVCFACV--------DGKEFRLAQMCGLH-IVVHAD---E 209 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TC--HHHHHHHHHHHH--------HTTCHHHHHHTTTT-TTTCHH---H
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CC--chhHHHHHHHHH--------HcCcHHHHHHHHHH-HHhCHh---h
Confidence 47899999999999999999999999 23 888999999988 99999999887775 334444 4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
...+..+|.+.|++++|+.++++++. .++.+..+|..++.+|. -++.++..+.++.|...+
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~-----------------ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYS-----------------KFKPQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH-----------------hcCHHHHHHHHHHHHHHh
Confidence 55688999999999999999999998 88999999999999885 236677888888888888
Q ss_pred ccCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHH
Q psy16607 620 SIDS-----SHGLSQNNLAVLEAREGHIERASTYLQAAAAS------------SPYLYETHYNQAVISN 671 (677)
Q Consensus 620 ~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~ 671 (677)
.+.| .++..|..+..+|...++++.|+...-+.... .+.+.+.+|.....|.
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 8877 77889999999999999999999877665444 6778888887776665
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=4.6e-19 Score=177.86 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=172.5
Q ss_pred ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHH
Q psy16607 406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVV 479 (677)
Q Consensus 406 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~ 479 (677)
++++|+..|.++ |.+|...|++++|+..|++++.+.+. ...++.++|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366777777665 44566777777777777777765321 2467888888888888999999
Q ss_pred HHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccC-CCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHH
Q psy16607 480 TCFERALSLALNE----NAADVWYNISHVAILNALSTSVYN-DQPEVALLFYRRLLQMGLYN------AELFNNLALCCF 548 (677)
Q Consensus 480 ~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 548 (677)
.+|++++.+.+.. ....++.++|.++. .. |++++|+.+|++++++.|.. ..++.++|.++.
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~--------~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILE--------NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 9888888887653 12567889999998 85 99999999999999887754 567899999999
Q ss_pred hccCHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 549 YSQQYDMVVTCFERALSLALNENAA-------DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~~~p~~~-------~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
.+|++++|+.+|++++. ..|+.. .++.++|.++. .+|++++|+.+|++++++
T Consensus 170 ~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIK--SSMGNRLSQWSLKDYFLKKGLCQL-------------------AATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HTTCHHHHHHHHHHHHH--TTSSCTTTGGGHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHGGGCC
T ss_pred HhCCHHHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhh
Confidence 99999999999999999 555432 36889999998 999999999999999999
Q ss_pred CCCChHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 622 DSSHGLS-----QNNLAVLEA--REGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 622 ~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
+|..... +..++..+. ..+++++|+..|++++.++|.+...+..+-...
T Consensus 229 ~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9987653 445566554 457899999999999999998877776665544
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=6.4e-18 Score=176.39 Aligned_cols=292 Identities=15% Similarity=0.055 Sum_probs=226.8
Q ss_pred HhcccCHHHHHHHHHHHHhhCcC--CCHHHH--HHHHH--HHHHcCCHHHHH---------HHHHHHHccCC------CH
Q psy16607 299 YHHENDVASAMDLAVESTKACEF--RDWWWK--VQLGK--CYFSLGLIREAQ---------QQFNSALNQFT------DI 357 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~--~~la~--~~~~~g~~~~A~---------~~~~~al~~~p------~~ 357 (677)
++..+++++|..+++++....+. .+.... +.+-. .....+.+..+. ..++++-.... ..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~ 101 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence 46789999999999988664321 222222 22211 111122222222 44444433221 22
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-------C
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYP------NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-------C 424 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~ 424 (677)
..++.+|..+...|++++|+..|+++++..+ ....++..+|.++...|++++|+.++++++...+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3567899999999999999999999987642 24568999999999999999999999999987553 2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hhcccc
Q psy16607 425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALS-----LALNEN 493 (677)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~ 493 (677)
..++..+|.++...|++++|+.+|++++.+.+. ...++.++|.+|...|++++|+.+|++++. .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~- 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL- 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-
Confidence 557889999999999999999999999986431 246789999999999999999999999999 55655
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHH
Q psy16607 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-----LYNAELFNNLALCCFYSQQ---YDMVVTCFERALS 565 (677)
Q Consensus 494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 565 (677)
..++..+|.++. ..|++++|+.+++++++.. +.....+..++.++...++ +.+|+.++++.-
T Consensus 261 -~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~- 330 (378)
T 3q15_A 261 -PKVLFGLSWTLC--------KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN- 330 (378)
T ss_dssp -HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-
Confidence 889999999998 9999999999999999873 4445667788888888888 888888888732
Q ss_pred HhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID 622 (677)
Q Consensus 566 ~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~ 622 (677)
..+.....+..+|.+|. ..|++++|+.+|+++++..
T Consensus 331 --~~~~~~~~~~~la~~y~-------------------~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 331 --LHAYIEACARSAAAVFE-------------------SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp --CHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHH
Confidence 34566678889999999 9999999999999998753
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=9.2e-19 Score=172.64 Aligned_cols=199 Identities=11% Similarity=0.117 Sum_probs=167.0
Q ss_pred HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-ch
Q psy16607 419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NA 494 (677)
Q Consensus 419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~ 494 (677)
...|.++..++.+|..+...|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|++++...|++ ..
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567778888888888888888888888888888888877 7888888888888888888888888888887755 44
Q ss_pred HHHHHHHHHHHHHhhhccccc--------CCCHHHHHHHHHHHHHcCCCcHHHH-----------------HHHHHHHHh
Q psy16607 495 ADVWYNISHVAILNALSTSVY--------NDQPEVALLFYRRLLQMGLYNAELF-----------------NNLALCCFY 549 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~ 549 (677)
..+++.+|.++. . .|++++|+..|+++++..|++..+. +.+|.++..
T Consensus 89 ~~a~~~lg~~~~--------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 89 PQAEYERAMCYY--------KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HHHHHHHHHHHH--------HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888998887 6 8999999999999999999886655 888999999
Q ss_pred ccCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC----------CCHHHHHHHHH
Q psy16607 550 SQQYDMVVTCFERALSLALNEN---AADVWYNISHVAIITECSPFSFSTHTSYLFIQGI----------SDTRLAIQCLH 616 (677)
Q Consensus 550 ~g~~~~A~~~~~~al~~~~~p~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~----------g~~~~A~~~~~ 616 (677)
.|++++|+..|++++. ..|+ ...+++.+|.+|. .+ |++++|+..|+
T Consensus 161 ~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~-------------------~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 161 RELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYI-------------------AYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHH-------------------HHHHTSCGGGHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHH-------------------HhcccchhhcccchHHHHHHHHH
Confidence 9999999999999999 6776 6789999999997 55 89999999999
Q ss_pred HHHccCCCCh---HHHHHHHHHHHHcCCHHHHH
Q psy16607 617 LALSIDSSHG---LSQNNLAVLEAREGHIERAS 646 (677)
Q Consensus 617 ~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 646 (677)
++++..|+++ .+...++.++...|+++++.
T Consensus 220 ~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 220 RLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999885 45667777777777766544
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=8.7e-18 Score=174.98 Aligned_cols=298 Identities=11% Similarity=0.003 Sum_probs=193.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC--CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHH
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT--DI----EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE------VTIMTE 396 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 396 (677)
.+|.++...|++++|+..+++++...| +. .++..+|.++...|++++|+..+++++...|.. ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344444445555555555555544433 11 234445555555555555555555555443221 123455
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----CHHHHH
Q psy16607 397 MARIFEGLNNMPMSVKYYKLILKRD--------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-----NAELFN 463 (677)
Q Consensus 397 la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~ 463 (677)
+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 6666666666666666666666553 223445566777777777777777777777766543 245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH-----HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWY-----NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-- 536 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-- 536 (677)
.+|.++...|++++|...+++++...+.......+. ..+.++. ..|++++|...+++++...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ--------MTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH--------HCCCHHHHHHHHHhCCCCCCCcch
Confidence 889999999999999999999887754321111111 2334455 7899999999999998776543
Q ss_pred --HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607 537 --AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610 (677)
Q Consensus 537 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~ 610 (677)
...+..++.++...|++++|+..+++++...... ....++..++.++. ..|++++
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~ 311 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW-------------------QAGRKSD 311 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HHTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-------------------HhCCHHH
Confidence 3467889999999999999999999998843221 22357788888888 9999999
Q ss_pred HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
|...+++++.+.+... ....+...| +.....+++.+...|.+.
T Consensus 312 A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 312 AQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence 9999999998654211 112233333 677888888888888643
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=1.6e-18 Score=173.95 Aligned_cols=248 Identities=13% Similarity=0.002 Sum_probs=195.7
Q ss_pred HHHHHHHHHHhhCcCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16607 307 SAMDLAVESTKACEFRDWWWKVQLGKCYFSL--G-LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNA 383 (677)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (677)
+|.+++.++-+..+.....+ .++.. + ++++|+..|+++ |.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~------~~~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM------KLFSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH------HHHSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc------hhcCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHH
Confidence 46677777777764432332 11232 2 589999999887 56788899999999999999
Q ss_pred HHcCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhC-CChHHHHHHHHH
Q psy16607 384 LDCYPN------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYN-DQPEVALLFYRR 450 (677)
Q Consensus 384 l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 450 (677)
+++.+. ...++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 887431 25688999999999999999999999999987753 56889999999996 999999999999
Q ss_pred HHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccch-----HHHHHHHHHHHHHhhhcccccCCCH
Q psy16607 451 LLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-----ADVWYNISHVAILNALSTSVYNDQP 519 (677)
Q Consensus 451 al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~l~~~~~l~~l~~~~~~~~~ 519 (677)
++++.|.. ..++..+|.++...|++++|+.+|++++...|++.. ...+.++|.++. ..|++
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~--------~~g~~ 215 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL--------AATDA 215 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH--------HTTCH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH--------HcCCH
Confidence 99987754 467899999999999999999999999999887621 236889999998 99999
Q ss_pred HHHHHHHHHHHHcCCCcHHH-----HHHHHHHHH--hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q psy16607 520 EVALLFYRRLLQMGLYNAEL-----FNNLALCCF--YSQQYDMVVTCFERALSLALNENAADVWYNISHVA 583 (677)
Q Consensus 520 ~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~ 583 (677)
++|+..|+++++++|..... +..++..+. ..+++++|+..|++++. .+|....++..+-..+
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHh
Confidence 99999999999999986653 445666664 56789999999999988 7888777766665544
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=9.7e-18 Score=174.63 Aligned_cols=272 Identities=11% Similarity=-0.010 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------H
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV-----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------M 425 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 425 (677)
..++..+|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45677889999999999999999999999887542 267889999999999999999999999886643 2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc---ch
Q psy16607 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NA 494 (677)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 494 (677)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+.. ..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346789999999999999999999999864 2345678889999999999999999999999887643 13
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC--CcHHHHH-----HHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL--YNAELFN-----NLALCCFYSQQYDMVVTCFERALSLA 567 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~ 567 (677)
..++..++.++. ..|++++|...+++++...+ ..+..+. .++.++...|++++|..++++++.
T Consensus 174 ~~~~~~la~~~~--------~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-- 243 (373)
T 1hz4_A 174 LQCLAMLIQCSL--------ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-- 243 (373)
T ss_dssp HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 567888999988 99999999999999987632 2211121 345668899999999999999987
Q ss_pred hccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHH
Q psy16607 568 LNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEA 637 (677)
Q Consensus 568 ~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~ 637 (677)
..+.. ...+..++.++. ..|++++|+..+++++...+. ...++..+|.++.
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQI-------------------LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 44322 345678888888 999999999999999876432 1257888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC
Q psy16607 638 REGHIERASTYLQAAAASSP 657 (677)
Q Consensus 638 ~~g~~~~A~~~~~~al~~~p 657 (677)
..|++++|...+++++.+.+
T Consensus 305 ~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998765
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1.4e-18 Score=195.01 Aligned_cols=184 Identities=11% Similarity=-0.036 Sum_probs=165.6
Q ss_pred HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH--------HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607 385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLIL--------KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (677)
..+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45677777777666 77899999999999999 88899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
++..+++.+|.++...|++++|+..|+++++++|++ ..+++++|.++. ..|++++ +..|+++++.+|++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~--------~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALAATAE--------LAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHH--------HHTCCCT-TCHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH--------HcCChHH-HHHHHHHHHhCCch
Confidence 999999999999999999999999999999999988 889999999988 8899999 99999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
..+++++|.++...|++++|+..|+++++ .+|++..++.++|.++.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999998 88999999999999886
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1e-18 Score=196.10 Aligned_cols=188 Identities=11% Similarity=-0.062 Sum_probs=175.7
Q ss_pred HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL--------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45677777777666 78899999999999999 89999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607 491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570 (677)
Q Consensus 491 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p 570 (677)
++ ..+|+.+|.++. ..|++++|+..|+++++.+|+++.+++++|.++...|++++ +..|+++++ .+|
T Consensus 465 ~~--~~a~~~lg~~~~--------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P 531 (681)
T 2pzi_A 465 WR--WRLVWYRAVAEL--------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TND 531 (681)
T ss_dssp CC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCT
T ss_pred ch--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCC
Confidence 98 999999999998 99999999999999999999999999999999999999999 999999999 899
Q ss_pred chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607 571 NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 641 (677)
Q Consensus 571 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 641 (677)
++..+|+++|.++. ..|++++|+..|+++++++|++..++.++|.++...|+
T Consensus 532 ~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 532 GVISAAFGLARARS-------------------AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred chHHHHHHHHHHHH-------------------HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999 99999999999999999999999999999999988666
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=4.8e-18 Score=167.50 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=171.4
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL 530 (677)
Q Consensus 452 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al 530 (677)
....|.++..++.+|..+...|++++|+..|++++...|.+ ....+++.+|.++. ..|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~--------~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY--------QNKEYLLAASEYERFI 79 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--------HhCcHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999886 33789999999998 9999999999999999
Q ss_pred HcCCC---cHHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHHhhccchHHHH-----------------HHHHHH
Q psy16607 531 QMGLY---NAELFNNLALCCFY--------SQQYDMVVTCFERALSLALNENAADVW-----------------YNISHV 582 (677)
Q Consensus 531 ~~~p~---~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~p~~~~~~-----------------~~l~~~ 582 (677)
+..|+ .+.+++.+|.++.. .|++++|+..|++++. ..|++..++ +.+|.+
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99874 46789999999999 9999999999999999 778765544 778888
Q ss_pred HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC---ChHHHHHHHHHHHHc----------CCHHHHHHHH
Q psy16607 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS---HGLSQNNLAVLEARE----------GHIERASTYL 649 (677)
Q Consensus 583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~ 649 (677)
|. ..|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+..|
T Consensus 158 ~~-------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 158 YE-------------------RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HH-------------------HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HH-------------------HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 88 999999999999999999998 457999999999977 9999999999
Q ss_pred HHHHHhCCCCh---HHHHHHHHHHHhcC
Q psy16607 650 QAAAASSPYLY---ETHYNQAVISNLVS 674 (677)
Q Consensus 650 ~~al~~~p~~~---~~~~~la~~~~~~G 674 (677)
+++++..|+++ .+...++.++..+|
T Consensus 219 ~~~~~~~p~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 219 ERLLQIFPDSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999995 55666777766654
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=3.9e-19 Score=158.95 Aligned_cols=140 Identities=10% Similarity=0.031 Sum_probs=134.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS 594 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~ 594 (677)
..|++++|+..+++++..+|.++..++.+|.+|...|++++|+.+|+++++ .+|+++.+|..+|.++.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~---------- 76 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYE---------- 76 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH----------
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH----------
Confidence 789999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607 595 THTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY-LQAAAASSPYLYETHYNQAVISNLV 673 (677)
Q Consensus 595 ~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~ 673 (677)
..|++++|+..|+++++++|+++.+++++|.++...|++++|... ++++++++|+++.++..++.++...
T Consensus 77 ---------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 77 ---------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp ---------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred ---------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887765 5999999999999999999999988
Q ss_pred CC
Q psy16607 674 SV 675 (677)
Q Consensus 674 G~ 675 (677)
|+
T Consensus 148 G~ 149 (150)
T 4ga2_A 148 GE 149 (150)
T ss_dssp CC
T ss_pred Cc
Confidence 85
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=4.9e-18 Score=161.08 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTE----------------MARIFEGLNNMPMSVKYYKLILKRDA 422 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p 422 (677)
.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33444444444444444444444444444444444444 55555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607 423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENAADVWYN 500 (677)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~ 500 (677)
++..++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+++++...|. ..+++.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~ 162 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---QYARYR 162 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---hHHHHH
Confidence 5555555555555555555555555555555555555555555555544432 23344444444432222 234444
Q ss_pred HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607 501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535 (677)
Q Consensus 501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~ 535 (677)
+|.++. ..|++++|+..|+++++++|+
T Consensus 163 ~g~~~~--------~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKL--------FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHH--------HHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHH--------HccCHHHHHHHHHHHHHhCCC
Confidence 454444 445555555555555555554
No 86
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.1e-19 Score=179.52 Aligned_cols=301 Identities=9% Similarity=0.022 Sum_probs=173.9
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHc
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRL 370 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~ 370 (677)
....++.++...|++++|++.|.++. +...+..++.++...|++++|+.+++.+.+..+++.+...++.+|.++
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh
Confidence 34466777888999999999998742 333447888899999999999999999988766778888999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR 450 (677)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 450 (677)
|++.++.++++. | +...|..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.+++
T Consensus 108 g~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 108 NRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp -CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999888752 4 4569999999999999999999999977 4788999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607 451 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL 530 (677)
Q Consensus 451 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al 530 (677)
+ .++..|.....++...|+++.|..+... +...|+ -...+...|. +.|++++|+.++++++
T Consensus 174 A-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad-----~l~~lv~~Ye--------k~G~~eEai~lLe~aL 234 (449)
T 1b89_A 174 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD-----ELEELINYYQ--------DRGYFEELITMLEAAL 234 (449)
T ss_dssp H-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH-----HHHHHHHHHH--------HTTCHHHHHHHHHHHT
T ss_pred c-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh-----hHHHHHHHHH--------HCCCHHHHHHHHHHHh
Confidence 9 4789999999999999999999888775 335544 3446777887 9999999999999999
Q ss_pred HcCCCcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 531 QMGLYNAELFNNLALCCFY--SQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 531 ~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~p-----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
..++.+..+|..+|.+|.+ .++..+.++.|...+. +.| .+...|..+..+|.
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~w~e~~~ly~------------------- 293 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYD------------------- 293 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTCHHHHHHHHH-------------------
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 9999999999999999875 4577888888877666 455 66778999999998
Q ss_pred cCCCHHHHHHHHHHHHcc------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSI------------DSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 653 (677)
..++++.|+...-+.... .+.+.+.++.....|. +....++..+..++
T Consensus 294 ~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 294 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred hhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 999999998876655433 5667888888777776 45556677777776
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=2.2e-17 Score=152.60 Aligned_cols=169 Identities=11% Similarity=0.121 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607 324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFE 402 (677)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (677)
..++..+|.++...|++++|+..|+++++..| +..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34557899999999999999999999999888 88999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607 403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 482 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 482 (677)
..|++++|+.++++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccc
Q psy16607 483 ERALSLALNE 492 (677)
Q Consensus 483 ~~al~~~p~~ 492 (677)
++++...|++
T Consensus 168 ~~~~~~~~~~ 177 (186)
T 3as5_A 168 KKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHcCCCc
Confidence 9999998876
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=2.5e-16 Score=157.21 Aligned_cols=241 Identities=10% Similarity=0.020 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--HH
Q psy16607 409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQ----------PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YD 476 (677)
Q Consensus 409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~ 476 (677)
+|+..+.+++..+|++..+|...+.++...+. +++++.+++.++..+|.+..+|+..+.++...++ ++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 44444555555555554444444444444333 4566666666666666666666666666666663 66
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----
Q psy16607 477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ-PEVALLFYRRLLQMGLYNAELFNNLALCCFYS----- 550 (677)
Q Consensus 477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----- 550 (677)
+++.++.++++.+|.+ ..+|...+.+.. ..|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 128 ~EL~~~~k~l~~dprN--y~AW~~R~~vl~--------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 128 RELELCARFLEADERN--FHCWDYRRFVAA--------QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 6666666666666666 666666666665 5555 46666666777777777777777666666655
Q ss_pred ---------cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607 551 ---------QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621 (677)
Q Consensus 551 ---------g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~ 621 (677)
+.++++++++.+++. .+|++..+|+.+..++... .. .... .....+.++++++.+++++++
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~---~~----~~~~-~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG---SG----RCEL-SVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS---SC----GGGC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc---cC----cccc-chHHHHHHHHHHHHHHHHHhh
Confidence 568899999999999 8999999998666655400 00 0000 001225689999999999999
Q ss_pred CCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 622 DSSHGLSQNNLAVLEA---REGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 622 ~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
.|++...+..++.+.. ..|..++...++.+.++++|....-|..+..-
T Consensus 268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 9998655554444332 35888999999999999999988777666543
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=1.8e-17 Score=153.25 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH
Q psy16607 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE 538 (677)
Q Consensus 459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~ 538 (677)
...+..+|.++...|++++|+..+++++...|.+ ..++..+|.++. ..|++++|+..++++++..|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~ 77 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--VDVALHLGIAYV--------KTGAVDRGTELLERSLADAPDNVK 77 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--hHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCHH
Confidence 4567778888888888888888888888888877 788888888887 888888888888888888888888
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
++..+|.++...|++++|+.++++++. ..|.+..++..+|.++. ..|++++|+..++++
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALD-------------------NLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHH-------------------HcCcHHHHHHHHHHH
Confidence 888888888888999999999999888 77888888888998888 899999999999999
Q ss_pred HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
+...|.++.++..+|.++...|++++|..+++++++.+|++..
T Consensus 137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999988899999999999999999999999999998887754
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=5.5e-18 Score=168.34 Aligned_cols=231 Identities=19% Similarity=0.169 Sum_probs=170.4
Q ss_pred HcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHH
Q psy16607 403 GLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAELFNNLA 466 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la 466 (677)
..|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++... |....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666666663 24456777788888888888888888888887663 44566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhh--------cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc------
Q psy16607 467 LCCFYSQQYDMVVTCFERALSLA--------LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM------ 532 (677)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~------ 532 (677)
.++...|++++|+.+|++++... |.. ..++..+|.++. ..|++++|+.+++++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQ--------NQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888773 443 888999999998 999999999999999988
Q ss_pred --CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 533 --GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-------NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 533 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
.|....++..+|.++...|++++|+.+|++++.... .+.....+..++..+... ....
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 229 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK-------------DKRR 229 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT-------------CCCC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC-------------Cchh
Confidence 777788999999999999999999999999998421 233445566666655400 0001
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
....+.++...++......|....++..+|.++...|++++|+.+|++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp C------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 23335555556655555566677899999999999999999999999998753
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=7.8e-18 Score=159.70 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH----------------HHHHHHHhhhcccccCCCHHHHH
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN----------------ISHVAILNALSTSVYNDQPEVAL 523 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------------l~~~~~l~~l~~~~~~~~~~~A~ 523 (677)
..+...|..+...|++++|+.+|++++..+|++ ..+++. +|.++. ..|++++|+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~--------~~g~~~~A~ 74 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR--TEMYYWTNVDKNSEISSKLATELALAYK--------KNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHH--------HTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHhhhcchhhhhHHHHHHHHHHHH--------HCCCHHHHH
Confidence 334444455555555555555555555555544 444444 999998 999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++ .+|+++.+|+++|.+|.
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~------------------- 133 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYY------------------- 133 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH-------------------
Confidence 999999999999999999999999999999999999999999 89999999999999986
Q ss_pred cCC--CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 604 GIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 604 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
..| +...+...+++++...|. ..+++.+|.++...|++++|+.+|+++++++|+.. +...+..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 554 355677788887654332 34688899999999999999999999999999754 44455554
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=1.9e-18 Score=154.48 Aligned_cols=145 Identities=10% Similarity=-0.009 Sum_probs=100.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607 330 LGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (677)
||.++...|++++|+..+++++...| +...++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 45666666777777777777776666 55666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHcCC
Q psy16607 409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF-YRRLLQMGLYNAELFNNLALCCFYSQQ 474 (677)
Q Consensus 409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~g~ 474 (677)
+|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777777665554 467777777777777777776666554
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=4.9e-18 Score=168.76 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHHHHcc-------C-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHH
Q psy16607 337 LGLIREAQQQFNSALNQ-------F-T-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--------YPNEVTIMTEMAR 399 (677)
Q Consensus 337 ~g~~~~A~~~~~~al~~-------~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~ 399 (677)
.|++++|+..|+++++. + | ...++..+|.++...|++++|+.+++++++. .|....++..+|.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34444444444444442 2 2 4566677777777777777777777777665 2445667777888
Q ss_pred HHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--------CCCCHHHHH
Q psy16607 400 IFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFN 463 (677)
Q Consensus 400 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~ 463 (677)
++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+++++++. .|....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 888888888888888887776 4556777888888888888888888888888877 555667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhccc-------chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNE-------NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
.+|.++...|++++|+.++++++...+.. .....+..++.... ..........+..+...++......|..
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE--SKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH--TTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88999999999999999998888764321 11345555555554 1111122334555555555555566777
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
..++..+|.++...|++++|+.+|+++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999986
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=1.1e-15 Score=152.46 Aligned_cols=246 Identities=7% Similarity=0.001 Sum_probs=192.3
Q ss_pred HcCChH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607 369 RLDQPI-RAIDIGRNALDCYPNEVTIMTEMARIFEGLNN----------MPMSVKYYKLILKRDATCMEAIACIGVNHFY 437 (677)
Q Consensus 369 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 437 (677)
..|.++ +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 445554 67888888888888888888888877777665 6788888888888888888888888888888
Q ss_pred CCC--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc-
Q psy16607 438 NDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS- 513 (677)
Q Consensus 438 ~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~- 513 (677)
.++ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+ ..+|..++.++. .+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~--~l~~~~ 196 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLP--QLHPQP 196 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHH--HHSCCC
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH--Hhhhcc
Confidence 884 7888888888888888888888888888888888 588888888888888888 888888888775 11000
Q ss_pred -------ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHhhccchHHH
Q psy16607 514 -------VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----------QQYDMVVTCFERALSLALNENAADV 575 (677)
Q Consensus 514 -------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~p~~~~~ 575 (677)
...+.++++++++.+++..+|++..+|+.+..++... +.+++++++++++++ ..|++.-.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchH
Confidence 0114589999999999999999999998776666665 568999999999999 88988544
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q psy16607 576 WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 636 (677)
Q Consensus 576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 636 (677)
+..++.+.. .+...|..++....+.+.++++|....-|..++.-+
T Consensus 275 l~~~~~~~~----------------~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMR----------------ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHH----------------HHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------hhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 333332221 112467889999999999999998877777665543
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=2.8e-17 Score=141.89 Aligned_cols=121 Identities=13% Similarity=0.027 Sum_probs=115.8
Q ss_pred HHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 529 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 529 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
+..++|+.+..+..+|..+++.|+|++|+..|+++++ .+|.++.+|.++|.++. .+|++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~-------------------~~~~~ 63 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLT-------------------KLMEF 63 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHH-------------------hhccH
Confidence 3457899999999999999999999999999999999 89999999999999999 99999
Q ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++.+++.+++.++
T Consensus 64 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 96
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=5.4e-16 Score=155.30 Aligned_cols=245 Identities=8% Similarity=-0.038 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 471 (677)
++..+..+....+..++|++.+.+++.++|++..+|...+.++...| .+++++.++++++..+|.+..+|+.++.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44444445555566677888888888888888888888888888887 48888888888888888888888888888887
Q ss_pred c-C-CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH--------HHHHHHHHHHHcCCCcHHHHH
Q psy16607 472 S-Q-QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE--------VALLFYRRLLQMGLYNAELFN 541 (677)
Q Consensus 472 ~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~ 541 (677)
. + ++++++.++.++++.+|.+ ..+|...+.+.. ..+.++ ++++++.++++.+|.+..+|.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkN--y~AW~~R~wvl~--------~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKN--YHTWAYLHWLYS--------HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTC--HHHHHHHHHHHH--------HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7 7 7888888888888888888 888888888776 555555 999999999999999999999
Q ss_pred HHHHHHHhccC-------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH------
Q psy16607 542 NLALCCFYSQQ-------YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT------ 608 (677)
Q Consensus 542 ~la~~~~~~g~-------~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~------ 608 (677)
.++.++...++ ++++++++++++. .+|++..+|+.+..++. ..|+.
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~-------------------~~~~~~~~~~~ 264 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLK-------------------HFSLPLVPILP 264 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCCSGGGHH
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------hcCCCcccccc
Confidence 99999999987 7999999999999 89999999999888776 33322
Q ss_pred --------------HHHHHHHHHHHcc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHH
Q psy16607 609 --------------RLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGHIERASTYLQAAA-ASSPYLYETHYNQA 667 (677)
Q Consensus 609 --------------~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la 667 (677)
.+-.......+.. .+..+.++..|+.+|...|+.++|.++++... +.+|-....|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 1222222222222 24567889999999999999999999999987 67888777776555
Q ss_pred H
Q psy16607 668 V 668 (677)
Q Consensus 668 ~ 668 (677)
.
T Consensus 345 ~ 345 (349)
T 3q7a_A 345 R 345 (349)
T ss_dssp H
T ss_pred H
Confidence 4
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=1.8e-16 Score=152.34 Aligned_cols=208 Identities=9% Similarity=-0.023 Sum_probs=156.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH---HHH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LFN 463 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 463 (677)
.+..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45678888888888899999999999888888865 468888888888888888888888888888887754 678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL 543 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 543 (677)
.+|.++...+.. . ...+..++..+. ..|++++|+..|+++++..|+++.++..+
T Consensus 83 ~~g~~~~~~~~~----------------~--~~~~~~~~~~~~--------~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------A--LQGFFGVDRSDR--------DPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp HHHHHHHHHHC----------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHhhhhh----------------h--hhhhhccchhhc--------CcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 888888766532 1 223445555555 77899999999999999999887655432
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 544 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 544 a~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
..+... ..........+|.+|. ..|++++|+..|+++++..|
T Consensus 137 ~~l~~~-------------------~~~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 137 KRLVFL-------------------KDRLAKYEYSVAEYYT-------------------ERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHH-------------------HHHHHHHHHHHHHHHH-------------------HcCcHHHHHHHHHHHHHHCc
Confidence 221110 1112234456788888 99999999999999999999
Q ss_pred CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 624 SHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 624 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
+++ +++..+|.++.++|++++|+..++++....|++.+
T Consensus 179 ~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 886 68999999999999999999999999999887643
No 98
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=3.8e-14 Score=156.30 Aligned_cols=362 Identities=12% Similarity=0.036 Sum_probs=265.8
Q ss_pred hhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcc
Q psy16607 277 SRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGL---IREAQQQFNSALNQ 353 (677)
Q Consensus 277 ~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 353 (677)
...||.++.....+.... ...++++.+..+|++++...|.....| ...+......|+ ++.+..+|++++..
T Consensus 59 l~~np~d~~~W~~yi~~~-----~~~~~~~~aR~vyEraL~~fP~~~~lW-~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 59 IEEQPTDIFLYVKLLKHH-----VSLKQWKQVYETFDKLHDRFPLMANIW-CMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHCcCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 334555544433333332 335899999999999999998777777 577777888888 99999999999998
Q ss_pred C---CCHHHHHHHHHHHHHcCCh----HH----HHHHHHHHHHc----CCCcHHHHHHHHHHHH---------HcCChhH
Q psy16607 354 F---TDIEAFIRMIRVYIRLDQP----IR----AIDIGRNALDC----YPNEVTIMTEMARIFE---------GLNNMPM 409 (677)
Q Consensus 354 ~---p~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~ 409 (677)
. |++..|..........++. ++ ....|++++.. ++....+|........ ..++.+.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 8 7888888877766665554 33 44777877763 5666667766554433 2345667
Q ss_pred HHHHHHHHHHhCcCCHH-HH------------------------------------------------------------
Q psy16607 410 SVKYYKLILKRDATCME-AI------------------------------------------------------------ 428 (677)
Q Consensus 410 A~~~~~~al~~~p~~~~-~~------------------------------------------------------------ 428 (677)
+..+|++++........ .|
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 77888888754211111 11
Q ss_pred -------------HHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q psy16607 429 -------------ACIGVNHFYND-------QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV-TCFERALS 487 (677)
Q Consensus 429 -------------~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 487 (677)
......-...+ ..+.....|++++...|..+.+|...+..+...|+.++|. ..|++++.
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 11110000000 0123456799999999999999999999999999999997 99999999
Q ss_pred hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----------CCC-----------cHHHHHHHHH
Q psy16607 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-----------GLY-----------NAELFNNLAL 545 (677)
Q Consensus 488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~la~ 545 (677)
..|.+ ...|...+.... ..|++++|...|++++.. .|. ...+|...+.
T Consensus 373 ~~P~s--~~Lwl~~a~~ee--------~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 373 CIPNS--AVLAFSLSEQYE--------LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCC--HHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 99987 888999999888 889999999999999964 242 3457999999
Q ss_pred HHHhccCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC-CHHHHHHHHHHHHccCC
Q psy16607 546 CCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS-DTRLAIQCLHLALSIDS 623 (677)
Q Consensus 546 ~~~~~g~~~~A~~~~~~al~~~~-~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g-~~~~A~~~~~~al~~~p 623 (677)
...+.|..+.|...|.+|++ . .+....+|...+.+.. ..+ +++.|...|+++++..|
T Consensus 443 ~erR~~~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~-------------------~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRR--LKKLVTPDIYLENAYIEY-------------------HISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHH-------------------TTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHH-------------------HhCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 4 3334566666665554 554 48999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHhcCC
Q psy16607 624 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY---LYETHYNQAVISNLVSV 675 (677)
Q Consensus 624 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~G~ 675 (677)
+++..|...+......|+.+.|..+|++++...|+ ....|..........|+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 98888888888888899999999999999998873 44566656666566665
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.71 E-value=5.1e-16 Score=149.11 Aligned_cols=188 Identities=11% Similarity=-0.025 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHH
Q psy16607 324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D---IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IMTE 396 (677)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 396 (677)
...++.+|..++..|++++|+..|+++++..| + ..+++.+|.++...|++++|+..|+++++.+|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34457889999999999999999999999877 2 478999999999999999999999999999998754 7888
Q ss_pred HHHHHHHc------------------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 397 MARIFEGL------------------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 397 la~~~~~~------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
+|.++... |++++|+..|+++++..|++..++..+..+....+ ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RL 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HH
Confidence 89888763 45555555555555555554333221111000000 00
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536 (677)
Q Consensus 459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 536 (677)
......+|.+|...|++++|+..|+++++..|++ ....+++.+|.++. +.|++++|+..++++....|++
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~--------~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR--------QMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH--------HcCCcHHHHHHHHHHHhhCCCc
Confidence 1123567888999999999999999999998886 22477889999988 8899999999998888877764
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=2.4e-15 Score=150.58 Aligned_cols=237 Identities=9% Similarity=-0.051 Sum_probs=188.9
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC-C-ChHHHHH
Q psy16607 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-D-QPEVALL 446 (677)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~ 446 (677)
.+..++|+..+.+++.++|++..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + +++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345567888888888888888888888888888888 488888888888888888888888888888776 6 7888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC
Q psy16607 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYD--------MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518 (677)
Q Consensus 447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~ 518 (677)
+++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+ ..+|...+.++. ..++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~--------~l~~ 216 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGWRWYLRV--------SRPG 216 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHT--------TSTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------hccc
Confidence 888888888888888888888888887777 9999999999999999 999999999987 6665
Q ss_pred -------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH--------------------HHHHHHHHHHHHHh----
Q psy16607 519 -------PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY--------------------DMVVTCFERALSLA---- 567 (677)
Q Consensus 519 -------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~---- 567 (677)
++++++++++++..+|++..+|+.+..++...|+. .+-.......+...
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 79999999999999999999999999998887764 12222222222100
Q ss_pred hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH-ccCCCChHHHHHHHHH
Q psy16607 568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL-SIDSSHGLSQNNLAVL 635 (677)
Q Consensus 568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 635 (677)
..+..+.++..++.+|. ..|+.++|+++++... +.+|-....|...+..
T Consensus 297 ~~~~s~~al~~l~d~~~-------------------~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFI-------------------EQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCSCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 11356778888888888 9999999999999987 6788777777666543
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=3.3e-16 Score=135.06 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=85.1
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH
Q psy16607 384 LDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN 463 (677)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 463 (677)
..++|+..+.+..+|..+.+.|++++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|.++.+|+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
.+|.++..+|++++|+..|+++++++|++ ..++..++.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSN--EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHHh
Confidence 77777777777777777777777777776 6666666654
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=6.2e-16 Score=156.20 Aligned_cols=185 Identities=16% Similarity=0.062 Sum_probs=124.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHH
Q psy16607 433 VNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNIS 502 (677)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~ 502 (677)
.+|...|++++|+..|.+++.+.+.. ..++.++|.+|...|++++|+.+|++++.+.+.. ....++.++|
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555443211 2355566666666666666666666666654321 1245667777
Q ss_pred HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----h
Q psy16607 503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----A 572 (677)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~ 572 (677)
.++. . |++++|+.+|++++.+.+.. ..++.++|.++..+|++++|+.+|++++.+..... .
T Consensus 124 ~~~~--------~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 124 KLME--------P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHT--------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH--------c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 7775 5 77888888888777665432 56788999999999999999999999998432111 2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH-----HHHHHHHHHHHcCCHHHHHH
Q psy16607 573 ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL-----SQNNLAVLEAREGHIERAST 647 (677)
Q Consensus 573 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 647 (677)
..++..+|.++. ..|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+..
T Consensus 195 ~~~~~~~g~~~~-------------------~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 195 YKKCIAQVLVQL-------------------HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 347788888888 9999999999999999 9987642 344555554 5677665554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=2.3e-16 Score=145.22 Aligned_cols=162 Identities=9% Similarity=-0.007 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH
Q psy16607 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540 (677)
Q Consensus 461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 540 (677)
.+..+|..+...|++++|+..|+++++.+|++ ..+++.+|.++. ..|++++|+..+++++...| ++..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~--------~~g~~~~A~~~~~~a~~~~p-~~~~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR--GDVKLAKADCLL--------ETKQFELAQELLATIPLEYQ-DNSYK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--HHHHHHHHHHHH--------HTTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHH--------HCCCHHHHHHHHHHhhhccC-ChHHH
Confidence 34444555555555555555555555555554 555555555554 55555555555555555555 44443
Q ss_pred HHHHHHH-HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 541 NNLALCC-FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 541 ~~la~~~-~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
..++.+. ...+...+|+..|++++. .+|++..+++.+|.++. ..|++++|+..|++++
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYN-------------------QVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcccHHHHHHHHHHHH
Confidence 3333222 122333456777888877 77888888888888877 8888888888888888
Q ss_pred ccCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 620 SIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 620 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
+.+|+. +.++..+|.++...|+.++|+..|++++.
T Consensus 136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888765 45788888888888888888888887764
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=5.7e-16 Score=156.47 Aligned_cols=206 Identities=12% Similarity=0.029 Sum_probs=171.2
Q ss_pred HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607 403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 481 (677)
Q Consensus 403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 481 (677)
..|++++|.++++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 3577889999999888776642 122 58899999998876 6788899999999999
Q ss_pred HHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcc
Q psy16607 482 FERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQ 551 (677)
Q Consensus 482 ~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g 551 (677)
|.+++.+.+.. ....++.++|.++. ..|++++|+.+|++++.+.+. ...++.++|.+|.. |
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~--------~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g 129 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLK--------DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L 129 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C
Confidence 99999987643 23568889999998 899999999999999977432 24688999999999 9
Q ss_pred CHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC--
Q psy16607 552 QYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-- 625 (677)
Q Consensus 552 ~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-- 625 (677)
++++|+.+|++++.+..... ...++.++|.++. .+|++++|+.+|++++.+.|.+
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-------------------RQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999432211 2578899999999 9999999999999999986544
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 626 ----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 626 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
..++..+|.++...|++++|+.+|++++ ++|....
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3478889999999999999999999999 9997653
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=1.6e-16 Score=146.26 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-H
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF-Y 471 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~ 471 (677)
.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++...| ++..+..++.+.. .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555555555555555555555 4444433333321 2
Q ss_pred cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHh
Q psy16607 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFY 549 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 549 (677)
.+...+|+..++++++.+|++ ..+++.+|.++. ..|++++|+..|+++++.+|.. ..++..+|.++..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDN--FELACELAVQYN--------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 222233555666666666665 566666666665 5666666666666666666543 4466666666666
Q ss_pred ccCHHHHHHHHHHHHH
Q psy16607 550 SQQYDMVVTCFERALS 565 (677)
Q Consensus 550 ~g~~~~A~~~~~~al~ 565 (677)
.|++++|+..|++++.
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 6777777777766664
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=1.3e-15 Score=152.20 Aligned_cols=168 Identities=10% Similarity=-0.055 Sum_probs=102.2
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 467 (677)
|.+.+.+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55555555555555555666666666666666666555556666666666666666666666555555544444444455
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHH
Q psy16607 468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--AELFNNLAL 545 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~ 545 (677)
.+...++.++|+..|++++..+|++ ..+++.+|.++. ..|++++|+..|+++++.+|++ ..++..++.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~--------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPED--AALATQLALQLH--------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHH--------HcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 5555555555666666666666665 666666666665 5666666666666666666655 566666666
Q ss_pred HHHhccCHHHHHHHHHHHHH
Q psy16607 546 CCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 546 ~~~~~g~~~~A~~~~~~al~ 565 (677)
++...|+.++|+..|++++.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 66677777777777766665
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.67 E-value=1.4e-15 Score=151.83 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=101.6
Q ss_pred CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607 421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500 (677)
Q Consensus 421 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 500 (677)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+. ...+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT--RYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--HHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--HHHHHH
Confidence 366666667777777777777777777777777777777777777777777777777777777666666643 333333
Q ss_pred HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607 501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 580 (677)
Q Consensus 501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~ 580 (677)
.+..+...++.++|+..|++++. .+|++..+++.+|
T Consensus 191 ------------------------------------------~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la 226 (287)
T 3qou_A 191 ------------------------------------------AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLA 226 (287)
T ss_dssp ------------------------------------------HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ------------------------------------------HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHH
Confidence 33334444445555555555555 4555555555555
Q ss_pred HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
.++. ..|++++|+..|.+++..+|++ ..++.+++.++...|+.++|...|++++.
T Consensus 227 ~~l~-------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 227 LQLH-------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHH-------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH-------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 5555 5555555555555555555555 55555666666666666666665555543
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=4e-16 Score=151.11 Aligned_cols=207 Identities=9% Similarity=-0.032 Sum_probs=170.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhhccc----------
Q psy16607 430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL-------ALCCFYSQQYDMVVTCFERALSLALNE---------- 492 (677)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~---------- 492 (677)
..|.-+ ..+++..|.+.|.+++..+|...++|..+ +.++...+++.+++..+.+.+.+.|..
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 334444 46778888888888888888888888888 778888888888888888888876654
Q ss_pred ---------chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 493 ---------NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 493 ---------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
...+++..++.++. ..|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+.+|+++
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~--------~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEA--------AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHH--------HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred ccccccccCCHhHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 01345556777777 89999999999999999999888 9999999999999999999999987
Q ss_pred HHHhhccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC--CC-ChHHHHHHHHHHHHc
Q psy16607 564 LSLALNENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID--SS-HGLSQNNLAVLEARE 639 (677)
Q Consensus 564 l~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~ 639 (677)
.... +|.. ..+++.+|.++. .+|++++|+.+|++++... |. .+++++.+|.++.++
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~-------------------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l 221 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAA-------------------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ 221 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH
T ss_pred hccC-CcccHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc
Confidence 7511 2222 468999999999 9999999999999998654 55 667999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 640 GHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 640 g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
|+.++|...|++++..+|+ ..++..|.
T Consensus 222 Gr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 222 GNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999999999999999 87776654
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=1.1e-15 Score=168.51 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=138.1
Q ss_pred cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q psy16607 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 551 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 551 (677)
.|++++|+..|+++++.+|++ ..+++.+|.++. ..|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD--FVAWLMLADAEL--------GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 478899999999999999998 999999999998 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHH
Q psy16607 552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNN 631 (677)
Q Consensus 552 ~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 631 (677)
++++|+.+|+++++ .+|++..++.++|.++. ..|++++|+..|+++++.+|++..++..
T Consensus 72 ~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 72 RHAEAAVLLQQASD--AAPEHPGIALWLGHALE-------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999 88999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 632 LAVLEARE---GHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 632 la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
+|.++... |++++|...|+++++.+|++...+..++
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999 9999999999999999998876665444
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=5.6e-16 Score=137.70 Aligned_cols=116 Identities=7% Similarity=-0.066 Sum_probs=111.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
..+++++..+|+++.+++.+|.++...|++++|+.+|++++. .+|+++.+|.++|.++.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~------------------- 81 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQ------------------- 81 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------
Confidence 446677889999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
..|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999876
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=3.5e-15 Score=164.51 Aligned_cols=164 Identities=10% Similarity=-0.016 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~ 518 (677)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++ ..++..+|.++. ..|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRW--------TQQR 72 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHH--------HTTC
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HCCC
Confidence 556666666666666666666666666666666667777777777776666666 666667776666 6677
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS 598 (677)
Q Consensus 519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 598 (677)
+++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++ .+|++..++..++.++.
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------- 136 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRR-------------- 136 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH--------------
Confidence 77777777777777777777777777777777777777777777777 66777777777777776
Q ss_pred hhHHhcC---CCHHHHHHHHHHHHccCCCChHHHHHHH
Q psy16607 599 YLFIQGI---SDTRLAIQCLHLALSIDSSHGLSQNNLA 633 (677)
Q Consensus 599 ~~~l~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 633 (677)
.. |++++|+..|+++++.+|.+...+..++
T Consensus 137 -----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 137 -----RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp -----HTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred -----HhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 66 7777777777777777777666665555
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=3.3e-13 Score=148.82 Aligned_cols=339 Identities=9% Similarity=0.025 Sum_probs=259.1
Q ss_pred HHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q psy16607 307 SAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ---PIRAIDIGRN 382 (677)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~---~~~A~~~~~~ 382 (677)
+-+..+++.+..+|.+...| ..++......+.++.+...|++++...| ....|...+....+.++ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~np~d~~~W-~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLY-VKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 45667888889997766666 6888888889999999999999999999 88999999999999999 9999999999
Q ss_pred HHHcCC--CcHHHHHHHHHHHHHcCCh----hH----HHHHHHHHHHh----CcCCHHHHHHHHHHHHh---------CC
Q psy16607 383 ALDCYP--NEVTIMTEMARIFEGLNNM----PM----SVKYYKLILKR----DATCMEAIACIGVNHFY---------ND 439 (677)
Q Consensus 383 al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~---------~g 439 (677)
++...| .+.++|..........++. ++ ..+.|++++.. ++.....|......... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 999983 5788888877766665554 33 44788888764 66677777766655432 33
Q ss_pred ChHHHHHHHHHHHHcCCCCH-HHHHH----------------H---------HH-HH-----------------------
Q psy16607 440 QPEVALLFYRRLLQMGLYNA-ELFNN----------------L---------AL-CC----------------------- 469 (677)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~-~~~~~----------------l---------a~-~~----------------------- 469 (677)
+.+.+..+|++++.+-.... ..|.. + +. .+
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 45677788888775421111 11100 0 00 00
Q ss_pred ----------------------HHcCC---------HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC
Q psy16607 470 ----------------------FYSQQ---------YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518 (677)
Q Consensus 470 ----------------------~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~ 518 (677)
+...+ .+.....|++++...|.. +..|+..+.... ..|+
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~--~~lW~~ya~~~~--------~~~~ 358 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA--PEIWFNMANYQG--------EKNT 358 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHH--------HHSC
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH--------hcCc
Confidence 00011 123456799999999987 999999999887 7788
Q ss_pred HHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh---------ccc-----------hHHHHH
Q psy16607 519 PEVAL-LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---------NEN-----------AADVWY 577 (677)
Q Consensus 519 ~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------~p~-----------~~~~~~ 577 (677)
.++|+ ..|++++...|.+...|..++......|++++|..+|++++.... .|. ...+|.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 88997 999999999999999999999999999999999999999997310 132 345677
Q ss_pred HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q psy16607 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-DSSHGLSQNNLAVLEAREGH-IERASTYLQAAAAS 655 (677)
Q Consensus 578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 655 (677)
..+.+.. +.|+.+.|...|.+|++. .+....+|...+.+....|+ ++.|..+|+++++.
T Consensus 439 ~y~~~er-------------------R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 439 VYMNTMK-------------------RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHHH-------------------HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7777776 889999999999999987 44556788888888777655 99999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q psy16607 656 SPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 656 ~p~~~~~~~~la~~~~~~G~ 675 (677)
.|+++..+...+......|+
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHhCCC
Confidence 99999988777777666665
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=5.9e-16 Score=149.95 Aligned_cols=209 Identities=7% Similarity=-0.140 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHhCcCCH-------
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEM-------ARIFEGLNNMPMSVKYYKLILKRDATCM------- 425 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~------- 425 (677)
++..|.-+ ..+++..|...|.+++..+|...++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34444444 57899999999999999999999999999 8899999999999999999999877543
Q ss_pred --------------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 426 --------------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 426 --------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
++...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+++....+.
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 3445588899999999999999999998888888 9999999999999999999999987765322
Q ss_pred cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607 492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG--LY-NAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568 (677)
Q Consensus 492 ~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 568 (677)
.....+++.+|.++. ..|++++|+.+|++++... |. .+.+++.+|.++.++|+.++|...|++++. .
T Consensus 168 ~~~~~a~~~LG~al~--------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~ 237 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAA--------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--T 237 (282)
T ss_dssp HHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H
T ss_pred ccHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c
Confidence 112458999999998 9999999999999998544 55 678999999999999999999999999999 8
Q ss_pred ccchHHHHHHHHH
Q psy16607 569 NENAADVWYNISH 581 (677)
Q Consensus 569 ~p~~~~~~~~l~~ 581 (677)
+|+ ..++..|..
T Consensus 238 ~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 238 HPE-PKVAAALKD 249 (282)
T ss_dssp SCC-HHHHHHHHC
T ss_pred CCc-HHHHHHHhC
Confidence 888 777766653
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=3.1e-16 Score=139.40 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=99.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
..+++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566677888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++.+++++|.+|..+|++++|+.+|++++++.|++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888888888888888888888888888874
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=2.2e-14 Score=136.19 Aligned_cols=186 Identities=13% Similarity=0.037 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCC----C
Q psy16607 443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND----Q 518 (677)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~----~ 518 (677)
+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .+ +.+++.+|.++. . + +
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~--~~a~~~lg~~y~--------~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD--GDALALLAQLKI--------R-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC--HHHHHHHHHHTT--------S-STTSCC
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--HHHHHHHHHHHH--------c-CCCCCC
Confidence 466677777765 57777788888887788888888888887765 33 777888888775 4 5 7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhcCCCC
Q psy16607 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p--~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
+++|+.+|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++++ ..+ .++.+++++|.+|.
T Consensus 69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~~~~~a~~~Lg~~y~-------- 136 (212)
T 3rjv_A 69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR--DSESDAAVDAQMLLGLIYA-------- 136 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--STTSHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--cCCCcchHHHHHHHHHHHH--------
Confidence 8888888888854 4677888888888877 7888888888888887 455 45888888888887
Q ss_pred cccchhhhHHhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChHH
Q psy16607 593 FSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE-G-----HIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 593 ~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~ 662 (677)
. .+++++|+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+.. +..+
T Consensus 137 -----------~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A 202 (212)
T 3rjv_A 137 -----------SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTG 202 (212)
T ss_dssp -----------HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHH
T ss_pred -----------cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHH
Confidence 6 77899999999999887 66778889999988764 3 8999999999998875 4555
Q ss_pred HHHHHHH
Q psy16607 663 HYNQAVI 669 (677)
Q Consensus 663 ~~~la~~ 669 (677)
...++.+
T Consensus 203 ~~~l~~l 209 (212)
T 3rjv_A 203 CEEFDRI 209 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=2.5e-14 Score=135.75 Aligned_cols=175 Identities=6% Similarity=-0.056 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC----ChHHHHHHHHH
Q psy16607 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND----QPEVALLFYRR 450 (677)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 450 (677)
+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 467777777765 57788888888888888888888888888764 467888888888877 6 78888888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc----CCCHHHH
Q psy16607 451 LLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY----NDQPEVA 522 (677)
Q Consensus 451 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~----~~~~~~A 522 (677)
+.+ +.++.+++++|.+|.. .+++++|+.+|+++++..+.+..+.+++.+|.++. . .+++++|
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~--------~g~g~~~d~~~A 148 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA--------SGVHGPEDDVKA 148 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH--------HTSSSSCCHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH--------cCCCCCCCHHHH
Confidence 855 4578888888888877 77888888888888887773112778888888886 5 6788888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhc-c-----CHHHHHHHHHHHHH
Q psy16607 523 LLFYRRLLQMGLYNAELFNNLALCCFYS-Q-----QYDMVVTCFERALS 565 (677)
Q Consensus 523 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~ 565 (677)
+.+|+++++. +.++.+++.+|.+|... | ++++|+.+|+++++
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 8888888887 66677888888888764 2 78999999998887
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=1.3e-15 Score=135.57 Aligned_cols=125 Identities=14% Similarity=0.069 Sum_probs=116.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
..|++++..+|.+...++.+|.++...|++++|+..|++++. .+|.++.+|+.+|.++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~------------------- 66 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQ------------------- 66 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHH-------------------
Confidence 467888999999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
..|++++|+..|++++.++|+++.+++++|.++...|++++|+..|+++++++|+++........+
T Consensus 67 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 67 AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654443333
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=7.5e-17 Score=164.90 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=143.9
Q ss_pred cCChhHHHHHHHH----HHHhCcCCHHHHHHHHHHHH------------hCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607 404 LNNMPMSVKYYKL----ILKRDATCMEAIACIGVNHF------------YNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467 (677)
Q Consensus 404 ~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 467 (677)
.+.+++|+..++. ++.+.|.. ++...|.... .++++++|+..+++++...|....++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4456667776666 66666654 3444443322 3344555555555555555555556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607 468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 547 (677)
++...|++++|+..|++++.+.|.+ .. -..+ ......+....++.++|.++
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~--~~--------------------~~~~-------~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYE--SS--------------------FSNE-------EAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTC--CC--------------------CCSH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhcc--cc--------------------CChH-------HHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555553 00 0000 11111222368999999999
Q ss_pred HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH
Q psy16607 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL 627 (677)
Q Consensus 548 ~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~ 627 (677)
...|++++|+.+|++++. .+|++..+++++|.++. .+|++++|+..|+++++++|++..
T Consensus 207 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHL-------------------AVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999 89999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy16607 628 SQNNLAVLEAREGHIERA-STYLQAAAAS 655 (677)
Q Consensus 628 ~~~~la~~~~~~g~~~~A-~~~~~~al~~ 655 (677)
++..++.++...|++++| ...|++++..
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5677777754
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=2.7e-16 Score=160.73 Aligned_cols=199 Identities=15% Similarity=0.087 Sum_probs=125.0
Q ss_pred cCCHHHHHHHHHH----HHccCCCHHHHHHHHHHHH------------HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607 337 LGLIREAQQQFNS----ALNQFTDIEAFIRMIRVYI------------RLDQPIRAIDIGRNALDCYPNEVTIMTEMARI 400 (677)
Q Consensus 337 ~g~~~~A~~~~~~----al~~~p~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (677)
.+.+++|+..++. ++.+.|.. ++...|.... .++++++|+..+++++...|.+..++..+|.+
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~-ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY-AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT-TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc-ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 4578888888888 77777742 3333333321 23344455555555555555555555555555
Q ss_pred HHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607 401 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 480 (677)
Q Consensus 401 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 480 (677)
+...|++++|+..|++++.+.|.+... ..+ ......+....++.++|.++...|++++|+.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~~-------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSF------------SNE-------EAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCC------------CSH-------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccC------------ChH-------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555555555544110 000 0001111115677777777777777777777
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHH-HHH
Q psy16607 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV-VTC 559 (677)
Q Consensus 481 ~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~ 559 (677)
+|+++++++|++ ..+++.+|.++. ..|++++|+..|+++++++|++..++..++.++...|++++| ...
T Consensus 218 ~~~~al~~~p~~--~~a~~~lg~~~~--------~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 218 SCNKALELDSNN--EKGLSRRGEAHL--------AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776 777777777777 777777777777777777777777888888888888888777 446
Q ss_pred HHHHHH
Q psy16607 560 FERALS 565 (677)
Q Consensus 560 ~~~al~ 565 (677)
|++++.
T Consensus 288 ~~~~~~ 293 (336)
T 1p5q_A 288 YANMFE 293 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=3.9e-15 Score=131.53 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~ 603 (677)
..|++++..+|++...++.+|.++...|++++|+..|++++. .+|++..+|..+|.++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~------------------- 63 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQ------------------- 63 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHH-------------------
Confidence 467778889999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607 604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 672 (677)
..|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++........+...
T Consensus 64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988766655555443
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=8.7e-15 Score=145.55 Aligned_cols=198 Identities=14% Similarity=0.044 Sum_probs=147.1
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 467 (677)
|.+...+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607 468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 547 (677)
++...|++++|+..|++++.++|++ ...+........ ...++...........+.+..+...++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ--RLNFGDDIPSAL-----------RIAKKKRWNSIEERRIHQESELHSYLTRLI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT--TCCCCSHHHHHH-----------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888888888888888765 111111111110 111222233333345666777777776655
Q ss_pred HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC-CCHHHHHHHHHHHHcc
Q psy16607 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI-SDTRLAIQCLHLALSI 621 (677)
Q Consensus 548 ~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~-g~~~~A~~~~~~al~~ 621 (677)
.|++++|++.++++++ .+|++......++.++. .. +.+++|...|.++.+.
T Consensus 148 --~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 --AAERERELEECQRNHE--GHEDDGHIRAQQACIEA-------------------KHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp --HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHH-------------------HHHHHHHHHHHHHHHSSCT
T ss_pred --HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHH-------------------HHHHHHHHHHHHHHhhhcc
Confidence 6889999999999988 78888877777776665 44 6788899999888763
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=1e-13 Score=120.24 Aligned_cols=134 Identities=20% Similarity=0.334 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY 437 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 437 (677)
.+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 438 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 438 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777777777777777777777777777778888888777777776664
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=5.5e-15 Score=146.97 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607 422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501 (677)
Q Consensus 422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 501 (677)
|.+...+..+|..+...|++++|+..|++++..+|.++.++.++|.++...|++++|+..++++++++|++ ..+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999988 8899999
Q ss_pred HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581 (677)
Q Consensus 502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~ 581 (677)
|.++. ..|++++|+..|+++++.+|++...+......... ..++......... ..+.+..+...++.
T Consensus 79 g~~~~--------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 79 GQCQL--------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEER--RIHQESELHSYLTR 145 (281)
T ss_dssp HHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHT--CCCCCCHHHHHHHH
T ss_pred HHHHH--------HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHH--HHhhhHHHHHHHHH
Confidence 99998 89999999999999998887653222211111111 1222222222222 45566666666655
Q ss_pred HHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q psy16607 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE-GHIERASTYLQAAAASS 656 (677)
Q Consensus 582 ~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 656 (677)
+ ..|++++|++.++++++.+|++......++.++... +.+++|...|.++.+..
T Consensus 146 l---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 146 L---------------------IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp H---------------------HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred H---------------------HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4 568999999999999999999988888888888776 77999999999887643
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=1.4e-14 Score=128.86 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++.+++.+|.++...|++++|+.+|++++++.|++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 88888888888888888888888888888888775
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=1.4e-13 Score=119.30 Aligned_cols=135 Identities=24% Similarity=0.435 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 575 (677)
Q Consensus 496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~ 575 (677)
.+++.+|.++. ..|++++|+..++++++..|.+...+..+|.++...|++++|+.++++++. ..|.+...
T Consensus 2 ~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYY--------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred cHHHHHHHHHH--------HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHH
Confidence 45778888887 899999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 576 WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
+..++.++. ..|++++|+..+++++...|.+..++..+|.++...|++++|...+++++..
T Consensus 72 ~~~l~~~~~-------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 72 WYNLGNAYY-------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHH-------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy16607 656 SPYL 659 (677)
Q Consensus 656 ~p~~ 659 (677)
+|++
T Consensus 133 ~~~~ 136 (136)
T 2fo7_A 133 DPRS 136 (136)
T ss_dssp STTC
T ss_pred CCCC
Confidence 9863
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.2e-14 Score=120.78 Aligned_cols=119 Identities=14% Similarity=-0.014 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
|..+..+..+|..+...|++++|+..|++++. .+|+++.+|.++|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~-------------------~~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALA-------------------KLMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HhcCHHHHHH
Confidence 34567899999999999999999999999999 89999999999999999 9999999999
Q ss_pred HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHhc
Q psy16607 614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS------PYLYETHYNQAVISNLV 673 (677)
Q Consensus 614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 673 (677)
.|+++++++|+++.+++.+|.++...|++++|+..|+++++++ |++..++..++.+...+
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 99999999999887653
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=8.4e-15 Score=159.47 Aligned_cols=203 Identities=11% Similarity=-0.011 Sum_probs=170.0
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ----------YDMVVTCFERALSLALNENAADVWYNISHVAILN 508 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~ 508 (677)
...++|++.+++++..+|++..+|+..+.++...|+ +++++.++++++..+|++ ..+|+..+.++.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--y~aW~hR~w~l~-- 118 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--YGTWHHRCWLLS-- 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--
Confidence 344678999999999999999999999999999988 999999999999999999 999999999998
Q ss_pred hhcccccCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy16607 509 ALSTSVYND--QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-QYDMVVTCFERALSLALNENAADVWYNISHVAII 585 (677)
Q Consensus 509 ~l~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~ 585 (677)
..+ +++++++++.++++.+|.+..+|..++.++...| .+++++++++++++ .+|.+..+|..++.++..
T Consensus 119 ------~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 119 ------RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp ------TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHH
T ss_pred ------HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHh
Confidence 888 6799999999999999999999999999999999 99999999999999 899999999999999872
Q ss_pred hhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH------------HHHHHHHHH
Q psy16607 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER------------ASTYLQAAA 653 (677)
Q Consensus 586 ~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al 653 (677)
....+...... -...+.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++
T Consensus 191 l~~~~~~~~~~-----~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 265 (567)
T 1dce_A 191 LHPQPDSGPQG-----RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPL 265 (567)
T ss_dssp HSCCCCSSSCC-----SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEE
T ss_pred hcccccccccc-----cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccce
Confidence 11110000000 0012567889999999999999999999999998888887665 555566666
Q ss_pred HhCCC
Q psy16607 654 ASSPY 658 (677)
Q Consensus 654 ~~~p~ 658 (677)
.++|.
T Consensus 266 ~~~~~ 270 (567)
T 1dce_A 266 TVGSR 270 (567)
T ss_dssp CTTBT
T ss_pred ecccc
Confidence 66654
No 128
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.55 E-value=4.9e-13 Score=131.21 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=184.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607 331 GKCYFSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (677)
.+-.+..|+|..++.-.. +..| .....+.+.++|..+|++.... . .+....+...++..+. ++
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc--cc--
Confidence 455677788888877332 3333 3456666777788888776421 1 1112334444444332 22
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDMVVTCFERAL 486 (677)
Q Consensus 409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 486 (677)
|+..+++.+...+....++..+|.++...|++++|++++.+.+..+| .+.+++...+.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888877656667778889999999999999999999988886 788899999999999999999999999998
Q ss_pred hhhcc----cchHHHHHHHHHHHHHhhhcccccCC--CHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHH
Q psy16607 487 SLALN----ENAADVWYNISHVAILNALSTSVYND--QPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 487 ~~~p~----~~~~~~~~~l~~~~~l~~l~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
+.+|+ + ......++..+. .+..| ++.+|...|+++.+..|+ ....+++ ++..+|++++|..
T Consensus 164 ~~~~d~~~~~--d~~l~~Laea~v------~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 NAIEDTVSGD--NEMILNLAESYI------KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQG 232 (310)
T ss_dssp HHSCHHHHHH--HHHHHHHHHHHH------HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHH
T ss_pred hcCccccccc--hHHHHHHHHHHH------HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHH
Confidence 88872 1 344455544422 00334 899999999999888887 3334444 8999999999999
Q ss_pred HHHHHHHHhh--------ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHH
Q psy16607 559 CFERALSLAL--------NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629 (677)
Q Consensus 559 ~~~~al~~~~--------~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~ 629 (677)
.++.+++... +|+++.++.++..+.. ..|+ +|.++++++.+.+|+++.+.
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~-------------------~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLAL-------------------MQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH-------------------HTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHH-------------------HhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9998776311 4889999999988887 8887 89999999999999998654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.6e-13 Score=149.41 Aligned_cols=174 Identities=11% Similarity=0.047 Sum_probs=162.4
Q ss_pred HcCC-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC----------HHHHHHHHHHHHHcCCCcHHH
Q psy16607 471 YSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ----------PEVALLFYRRLLQMGLYNAEL 539 (677)
Q Consensus 471 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~ 539 (677)
..|+ .++|+..+++++..+|++ ..+|+..+.++. ..++ +++++..++++++.+|++..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~--~taW~~R~~~l~--------~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a 109 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF--ATLWNCRREVLQ--------HLETEKSPEESAALVKAELGFLESCLRVNPKSYGT 109 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchh--HHHHHHHHHHHH--------hcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 3444 467899999999999998 999999999987 6666 999999999999999999999
Q ss_pred HHHHHHHHHhcc--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC-CHHHHHHHHH
Q psy16607 540 FNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS-DTRLAIQCLH 616 (677)
Q Consensus 540 ~~~la~~~~~~g--~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g-~~~~A~~~~~ 616 (677)
|+..+.++.+.+ ++++++.+++++++ .+|.+..+|...+.++. ..| .+++++++++
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~-------------------~l~~~~~~el~~~~ 168 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAA-------------------QAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHH-------------------HcCCChHHHHHHHH
Confidence 999999999999 77999999999999 89999999999999998 899 8999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 617 LALSIDSSHGLSQNNLAVLEARE--------------GHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 617 ~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
++++.+|.+..+|+.++.++... +.+++|++++.+++.++|++..+|+.++.++...|.
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 99999999999999999999885 668999999999999999999999999999987765
No 130
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=3.5e-13 Score=132.28 Aligned_cols=248 Identities=12% Similarity=-0.001 Sum_probs=193.3
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID 378 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 378 (677)
.+..|+|..++.-. .+..|.+.....+.+.+++..+|++... ....|...+...++..+. ++ |+.
T Consensus 23 ~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~~~~a~~~la~~~~--~~---a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSKLGKVLDLYVQFLD--TK---NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSSTTHHHHHHHHHHHT--TT---CCH
T ss_pred HHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC-------CCCCHHHHHHHHHHHHhc--cc---HHH
Confidence 34469999999843 3444444555557788999999998742 122234445555555542 22 889
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (677)
.+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 99998887666677778999999999999999999999999887 7899999999999999999999999999999988
Q ss_pred C----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607 457 Y----NAELFNNL--ALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR 528 (677)
Q Consensus 457 ~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~ 528 (677)
+ +..+...+ +++....| ++.+|..+|+++....|+......+++ +++ .+|++++|...++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~--------~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHL--------QQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH--------HHTCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH--------HcCCHHHHHHHHHH
Confidence 3 22333344 55566667 999999999999888886201334444 566 88999999999998
Q ss_pred HHHc----------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHH
Q psy16607 529 LLQM----------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 576 (677)
Q Consensus 529 al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~ 576 (677)
+++. +|+++.++.+++.+....|+ +|.+++.++.. ..|+++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHH
Confidence 7765 58899999999999999998 89999999999 889988554
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=1.4e-13 Score=118.72 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=119.3
Q ss_pred cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
.+|.+...+..+|.++...|++++|+..|++++. ..|++..++..+|.++. ..|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A 65 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYS-------------------KLGNYAGA 65 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH-------------------HhhchHHH
Confidence 3456678899999999999999999999999999 78999999999999999 99999999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCCC
Q psy16607 612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP 677 (677)
Q Consensus 612 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ip 677 (677)
+..+++++...|+++.++..+|.++...|++++|+.+|+++++++|++..++..++.++..+|++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-13 Score=118.96 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=117.5
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607 533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612 (677)
Q Consensus 533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~ 612 (677)
.|.+...++.+|.++...|++++|+.+|++++. .+|++..++..+|.++. ..|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A~ 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYT-------------------KLLEFQLAL 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHT-------------------TTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHH-------------------HhccHHHHH
Confidence 467788999999999999999999999999999 88999999999999998 999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 613 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
.+++++++.+|.++.++..+|.++...|++++|+.+|+++++++|++..++..++.++...|+
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999998885
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.53 E-value=5.4e-14 Score=124.10 Aligned_cols=115 Identities=13% Similarity=-0.016 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++.+++.+|.++...|++++|+.+|++++.+.|++
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 88888888888888888888888888888888766
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.53 E-value=7.7e-14 Score=128.21 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=121.0
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHhhcCCC
Q psy16607 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIITECSPF 591 (677)
Q Consensus 513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~-~~~~~~~p~ 591 (677)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++. .+|++..++..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~------- 90 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYY------- 90 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHH-------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH-------
Confidence 34789999999999999999999999999999999999999999999999999 889999999999999 77
Q ss_pred CcccchhhhHHhcCCCH--HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 592 SFSTHTSYLFIQGISDT--RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 592 ~~~~~~~~~~l~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
..|++ ++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++......+.
T Consensus 91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 89998 99999999999999999999999999999999999999999999999999875544333
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=4.6e-13 Score=126.96 Aligned_cols=145 Identities=15% Similarity=0.098 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
...++.+|..+. ..|++++|+..|++++ + .++.+++.+|.++...|++++|+.+|++++. .+|++..
T Consensus 6 ~~~~~~~g~~~~--------~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~ 72 (213)
T 1hh8_A 6 AISLWNEGVLAA--------DKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHH--------HhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchH
Confidence 445678888887 9999999999999985 3 3788999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh----------------HHHHHHHHHHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG----------------LSQNNLAVLEAR 638 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~ 638 (677)
+++.+|.++. ..|++++|+..|+++++..|.+. .+++++|.++..
T Consensus 73 ~~~~lg~~~~-------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 73 AYFQRGMLYY-------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 9999999999 99999999999999999888776 999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 639 EGHIERASTYLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 639 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
.|++++|+..|+++++++|++.......+....
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 999999999999999999988766666555444
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.6e-13 Score=124.29 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=110.2
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607 533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612 (677)
Q Consensus 533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~ 612 (677)
.+.++..++.+|.++...|++++|+.+|++++. .+|++..+|+++|.++. ..|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYS-------------------ASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHH-------------------HccCHHHHH
Confidence 455678899999999999999999999999999 89999999999999999 999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 613 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
..|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++|++..++++++....
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997777666543
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.51 E-value=5.5e-13 Score=126.40 Aligned_cols=131 Identities=10% Similarity=-0.075 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16607 326 WKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN 405 (677)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (677)
.++.+|.++...|++++|+..|++++ .++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34677777778888888888887774 4467777778888888888888888888887777777777777888888888
Q ss_pred ChhHHHHHHHHHHHhCcCCH----------------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607 406 NMPMSVKYYKLILKRDATCM----------------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 458 (677)
Q Consensus 406 ~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (677)
++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++..|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 88888888888777666554 667777777777777777777777777776654
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=7.3e-13 Score=119.79 Aligned_cols=133 Identities=9% Similarity=0.047 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhh
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLAL--CCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~ 489 (677)
..|++++|+.+|++++...|.+..++..++. .+...|++++|+..+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999999999999999999888855444 4788899999999998876554
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.6e-13 Score=114.71 Aligned_cols=114 Identities=9% Similarity=-0.000 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
....+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++++|.++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44556666666667777777777777777777766667777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhh------cccchHHHHHHHHHHH
Q psy16607 470 FYSQQYDMVVTCFERALSLA------LNENAADVWYNISHVA 505 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~ 505 (677)
...|++++|+..|+++++++ |.+ ..++..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~--~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSA--REIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTH--HHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhH--HHHHHHHHHHH
Confidence 77777777777777777766 554 55555555443
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.49 E-value=5.1e-14 Score=132.12 Aligned_cols=161 Identities=11% Similarity=0.041 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH-----
Q psy16607 463 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA----- 537 (677)
Q Consensus 463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~----- 537 (677)
...+......|+++++.+.++......+.. ...+..+|..+. ..|++++|+..|++++...|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~ 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFF--------KKNEINEAIVKYKEALDFFIHTEEWDDQ 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHhcccccchh
Confidence 334444455555555555555444433333 555666666665 66666666666666666666554
Q ss_pred -----------HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607 538 -----------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS 606 (677)
Q Consensus 538 -----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g 606 (677)
.++.++|.++...|++++|+.++++++. .+|++..+++.+|.++. ..|
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~~ 136 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANM-------------------YFG 136 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH-------------------Hcc
Confidence 7899999999999999999999999999 78999999999999998 999
Q ss_pred CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q psy16607 607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS-TYLQAAAA 654 (677)
Q Consensus 607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 654 (677)
++++|+..|+++++++|++..++..++.++...|+..++. ..|.+++.
T Consensus 137 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 137 FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998888877 44555444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=3.2e-13 Score=124.06 Aligned_cols=125 Identities=12% Similarity=0.154 Sum_probs=94.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH-HHhCCCh--HHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN-HFYNDQP--EVA 444 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A 444 (677)
...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++..+|.+..++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3456777777777777777777777777777777777777778777777777777777777777777 6677777 778
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+..+++++..+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888877777777777778888888888888888888887777765
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=1.5e-12 Score=130.38 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535 (677)
Q Consensus 460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~ 535 (677)
..+...+..+...|++++|+..+.+++...+.. .....++.+|.++. ..|++++|+..+++++...+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--------KKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH--------TSSCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHhc
Confidence 344555666667777777777777766655443 11233455666666 778888888888888865443
Q ss_pred c------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-hccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607 536 N------AELFNNLALCCFYSQQYDMVVTCFERALSLA-LNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQG 604 (677)
Q Consensus 536 ~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~ 604 (677)
. ..+++.+|.+|...|++++|+.+|++++... ..+++ ..+++++|.+|. .
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-------------------~ 208 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-------------------L 208 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-------------------H
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-------------------H
Confidence 2 5688999999999999999999999999542 23332 268999999999 9
Q ss_pred CCCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q psy16607 605 ISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEAREGHIERA-STYLQAAAASS 656 (677)
Q Consensus 605 ~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 656 (677)
.|++++|+.++++++.+.+. ...+++++|.++...|++++| ..+|++++.+.
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999987532 267899999999999999999 88899998764
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.47 E-value=1.7e-12 Score=110.80 Aligned_cols=121 Identities=26% Similarity=0.344 Sum_probs=113.2
Q ss_pred CCCc-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 533 GLYN-AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 533 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
+|.. ...++.+|.++...|++++|+..|++++. ..|++..++..+|.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYY-------------------KQGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHH-------------------HhCCHHHH
Confidence 3444 77899999999999999999999999999 78999999999999999 99999999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 612 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
+..+++++...|.++.++..+|.++...|++++|+..|+++++.+|++..++.+++.++...|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998776
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.47 E-value=3.3e-12 Score=127.81 Aligned_cols=169 Identities=12% Similarity=0.064 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------
Q psy16607 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------ 458 (677)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------ 458 (677)
...+...+..+...|++++|++.+.++++..+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455566666777777777777777776655432 334567777788888888888888888754432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---hcccc--hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC
Q psy16607 459 AELFNNLALCCFYSQQYDMVVTCFERALSL---ALNEN--AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533 (677)
Q Consensus 459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~--~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~ 533 (677)
..+++.+|.+|...|++++|+.+|++++.. .+++. ...+++++|.++. ..|++++|+.+++++++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~--------~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--------LDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH--------HHhhHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999844 34331 1368999999998 9999999999999999765
Q ss_pred CC------cHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHh
Q psy16607 534 LY------NAELFNNLALCCFYSQQYDMV-VTCFERALSLA 567 (677)
Q Consensus 534 p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 567 (677)
+. ...+++++|.++...|++++| ..+|++++.+.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 32 378899999999999999999 88899999743
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.47 E-value=1.7e-12 Score=117.25 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 574 (677)
...+..+|.++. ..|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++. .+|.+..
T Consensus 13 ~~~~~~~a~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~ 82 (166)
T 1a17_A 13 AEELKTQANDYF--------KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIK 82 (166)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHH
Confidence 677889999998 999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA--VLEAREGHIERASTYLQAA 652 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~a 652 (677)
++..+|.++. ..|++++|+.+|+++++.+|.+..++..++ ..+...|++++|+..++++
T Consensus 83 ~~~~~a~~~~-------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 83 GYYRRAASNM-------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999 999999999999999999999998885554 4488899999999999988
Q ss_pred HHhC
Q psy16607 653 AASS 656 (677)
Q Consensus 653 l~~~ 656 (677)
..+.
T Consensus 144 ~~~~ 147 (166)
T 1a17_A 144 RSVV 147 (166)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=2e-13 Score=119.61 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-------hH-----HHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-------AA-----DVWYNISHVAIITECSPFSFSTHTSYLFIQG 604 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-------~~-----~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~ 604 (677)
...+..+|..++..|+|++|+..|+++++ .+|+ +. .+|.++|.++. .
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~-------------------~ 69 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALA-------------------G 69 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHH-------------------H
Confidence 45678899999999999999999999999 6777 33 49999999999 9
Q ss_pred CCCHHHHHHHHHHHHcc-------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 605 ISDTRLAIQCLHLALSI-------DSSHGLSQ----NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 605 ~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
+|++++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++....-.+..
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999 99999999 999999999999999999999999999988755444433
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.46 E-value=1.1e-13 Score=129.70 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=84.9
Q ss_pred HHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH----------------HHHH
Q psy16607 400 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA----------------ELFN 463 (677)
Q Consensus 400 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~ 463 (677)
.....|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++ .++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 333444444444444443333333444455555555555555555555555555554444 5666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL 543 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 543 (677)
++|.++...|++++|+.++++++..+|.+ ..+++.+|.++. ..|++++|+..|+++++.+|.+..++..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANM--------YFGFLEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH--------HcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 66777777777777777777777766666 666677776666 66777777777777777777777777777
Q ss_pred HHHHHhccCHHHHH
Q psy16607 544 ALCCFYSQQYDMVV 557 (677)
Q Consensus 544 a~~~~~~g~~~~A~ 557 (677)
+.++...++..++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666555
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.45 E-value=5.5e-13 Score=114.95 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~ 615 (677)
.+.++.++|..+++.|+|++|+.+|+++++ .+|+++.+|.++|.+|. .+|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~-------------------~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYF-------------------EEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHH-------------------HhhhHHHHHHHH
Confidence 356788999999999999999999999999 89999999999999999 999999999999
Q ss_pred HHHHccCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607 616 HLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667 (677)
Q Consensus 616 ~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 667 (677)
+++++++|++. .++.++|.++...|++++|+.+|++++...|+ ++....+.
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 99999987653 57889999999999999999999999999885 45544444
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=1.3e-12 Score=118.32 Aligned_cols=115 Identities=10% Similarity=0.000 Sum_probs=76.9
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 467 (677)
+.+...+..+|.++...|++++|+.+|+++++++|.+..+++.+|.++...|++++|+..|+++++++|.++.+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33455666666666667777777777777777666666667777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
++...|++++|+.+|+++++++|++ ..+++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNG--GSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSS--CCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc--hHHHHHHHHH
Confidence 7777777777777777777777666 4444444433
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=3.2e-12 Score=110.08 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 435 (677)
....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 475 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 475 (677)
...|++++|+..+++++...|.+..++..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777776654
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.44 E-value=3e-12 Score=128.14 Aligned_cols=166 Identities=13% Similarity=0.031 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc---
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--- 536 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--- 536 (677)
..+..+...|++++|+..+++++...+.... ...+..+|.++. ..+++++|+..|++++...+..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--------KKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT--------TSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHHhcccccH
Confidence 3455666777777777777777765554311 122334666665 7778888888888888754332
Q ss_pred ---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 537 ---AELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 537 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
..++.++|.+|...|++++|+.+|++++.... .+....+++++|.+|. .+|++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-------------------~~~~y 212 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-------------------LDSRY 212 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-------------------HTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-------------------HHhHH
Confidence 34789999999999999999999999996421 2344568999999999 99999
Q ss_pred HHHHHHHHHHHccCCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q psy16607 609 RLAIQCLHLALSIDSSH------GLSQNNLAVLEAREG-HIERASTYLQAAAASS 656 (677)
Q Consensus 609 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 656 (677)
++|+.++++++++.+.. +.+++++|.++..+| ++++|+.+|++++.+.
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999875433 688999999999999 5799999999999864
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-12 Score=111.09 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=62.9
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468 (677)
Q Consensus 389 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 468 (677)
.+...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607 469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506 (677)
Q Consensus 469 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 506 (677)
+...|++++|+.+|++++..+|.+ ..++..++.++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC--KEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG--THHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHH
Confidence 555555555555555555555554 445555555443
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.43 E-value=1.6e-12 Score=117.47 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh----------------hccchHHHHHHHHHHHHHhhcCCCCcccchhh
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLA----------------LNENAADVWYNISHVAIITECSPFSFSTHTSY 599 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 599 (677)
....+..+|..++..|+|++|+..|.+++... .+|....+|.++|.++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--------------- 74 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL--------------- 74 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 35678899999999999999999999999931 06778899999999999
Q ss_pred hHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhc
Q psy16607 600 LFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAVISNLV 673 (677)
Q Consensus 600 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 673 (677)
.+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...++.+...+
T Consensus 75 ----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 75 ----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp ----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred ----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 6677777776543
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=7.7e-13 Score=112.90 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
.++.+|..+...|++++|+..|++++. .+|++..+|+.+|.++. ..|++++|+..|+++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQA-------------------ENEKDGLAIIALNHA 77 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHH
Confidence 478899999999999999999999999 89999999999999999 999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
++++|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus 78 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 78 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999999999998754
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.43 E-value=5.6e-12 Score=126.12 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=123.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCcCCHH------HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHH
Q psy16607 396 EMARIFEGLNNMPMSVKYYKLILKRDATCME------AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFN 463 (677)
Q Consensus 396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~ 463 (677)
..+..+...|++++|+..+++++...+.... .+..+|.++...+++++|+.++++++...+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3455566667777777777777665554433 23346777777778888888888887754322 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhc---cc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLAL---NE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-- 536 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~p---~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-- 536 (677)
++|.+|...|++++|+.+|+++++... .+ ....+++++|.++. ..|++++|+.+++++++..+..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~--------~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--------LDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHcCc
Confidence 888888888999999988888885321 11 23668999999998 9999999999999999765433
Q ss_pred ----HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Q psy16607 537 ----AELFNNLALCCFYSQQ-YDMVVTCFERALSLA 567 (677)
Q Consensus 537 ----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 567 (677)
+.+++.+|.++...|+ +++|+.+|++++.+.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 7899999999999995 799999999999853
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.42 E-value=1.6e-12 Score=111.95 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------HHHHHH
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------AELFNN 464 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~ 464 (677)
.++..+|..+.+.|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+ ..++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555554433 235666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 465 LALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 465 la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
+|.++...|++++|+.+|++++...|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 777777777777777777777776665
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=2.5e-12 Score=112.26 Aligned_cols=120 Identities=16% Similarity=0.110 Sum_probs=111.0
Q ss_pred cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611 (677)
Q Consensus 532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A 611 (677)
.+|.++..++.+|.++...|++++|+.+|++++. .+|++..++..+|.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~-------------------~~~~~~~A 62 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYL-------------------KMQQPEQA 62 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHH-------------------HhcCHHHH
Confidence 4677899999999999999999999999999999 89999999999999999 99999999
Q ss_pred HHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHh
Q psy16607 612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY-----LYETHYNQAVISNL 672 (677)
Q Consensus 612 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 672 (677)
+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+ +..+...+..+...
T Consensus 63 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 77777777766544
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=4.1e-12 Score=107.18 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~ 615 (677)
.+..++.+|.++...|++++|+..|++++. ..|.+..++..+|.++. ..|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYA-------------------KKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHH-------------------hhccHHHHHHHH
Confidence 457789999999999999999999999999 88999999999999999 999999999999
Q ss_pred HHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607 616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671 (677)
Q Consensus 616 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 671 (677)
++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999988753
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.41 E-value=2.9e-13 Score=144.36 Aligned_cols=151 Identities=13% Similarity=0.207 Sum_probs=128.9
Q ss_pred cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc---------------
Q psy16607 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--------------- 536 (677)
Q Consensus 472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--------------- 536 (677)
++++++|+..|++++...|.. ...+..+|..+. ..|++++|+..|+++++.+|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~--a~~~~~~G~~~~--------~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 316 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQ--AAIVKEKGTVYF--------KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL 316 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHH--HHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 344455555566666666665 888999999998 9999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
..+|+++|.++.++|++++|+.+|++++. .+|++..+|+++|.+|. .+|++++|+..|+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~-------------------~~g~~~~A~~~~~ 375 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQL-------------------LMNEFESAKGDFE 375 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHH-------------------HccCHHHHHHHHH
Confidence 68999999999999999999999999999 89999999999999999 9999999999999
Q ss_pred HHHccCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Q psy16607 617 LALSIDSSHGLSQNNLAVLEAREGHIERASTY-LQAAA 653 (677)
Q Consensus 617 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al 653 (677)
++++++|++..++..++.++...|++++|... |++++
T Consensus 376 ~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988753 44433
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.6e-12 Score=111.39 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=113.9
Q ss_pred cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA---ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608 (677)
Q Consensus 532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~ 608 (677)
..|.+...++.+|..+...|++++|+.+|++++. ..|++ ..++..+|.++. ..|++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~-------------------~~~~~ 81 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHL-------------------KLEDY 81 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHH-------------------HTTCH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHH-------------------HHccH
Confidence 4577889999999999999999999999999999 78887 889999999999 99999
Q ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV 673 (677)
Q Consensus 609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 673 (677)
++|+..+++++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..++.+....
T Consensus 82 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 82 DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999988876544
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=2.3e-12 Score=112.86 Aligned_cols=101 Identities=10% Similarity=-0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-------CH-----HHHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q psy16607 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-------CM-----EAIACIGVNHFYNDQPEVALLFYRRLLQM----- 454 (677)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 454 (677)
..+..+|..+...|+|++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..|++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555666666666666666666666666665 33 37888888888888888888888888888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 455 --GLYNAELF----NNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 455 --~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+|++..+| +++|.++..+|++++|+.+|++++++.|++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999999887
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=3.2e-13 Score=144.02 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=97.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607 369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448 (677)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 448 (677)
.++++++|+..++.++...|.....+..+|..+...|++++|+..|++++++.|.+... . .+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~-~~~----- 308 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-----------S-EKE----- 308 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-----------C-HHH-----
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-----------C-hHH-----
Confidence 45667777777777777777777788888888888888888888888888877765210 0 000
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR 528 (677)
Q Consensus 449 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~ 528 (677)
.....+....+++++|.+|..+|++++|+.+|++++.++|++ ..+++++|.++. ..|++++|+..|++
T Consensus 309 --~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~--------~~g~~~~A~~~~~~ 376 (457)
T 1kt0_A 309 --SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQL--------LMNEFESAKGDFEK 376 (457)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHH--------HccCHHHHHHHHHH
Confidence 000111123455556666666666666666666666666655 556666666665 56666666666666
Q ss_pred HHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607 529 LLQMGLYNAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 529 al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
+++++|++..++..++.++...+++++|..
T Consensus 377 al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 377 VLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665543
No 163
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.39 E-value=2.7e-10 Score=122.08 Aligned_cols=322 Identities=12% Similarity=0.006 Sum_probs=181.2
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcc---CC-CHHHHHHHHHHHH----HcCC
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG-LIREAQQQFNSALNQ---FT-DIEAFIRMIRVYI----RLDQ 372 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~----~~g~ 372 (677)
.|+++.+..+|++++...| +...|. .........+ ..+.....|+.++.. ++ +...|......+. ..++
T Consensus 27 ~~~~e~~~~iferal~~~p-s~~LW~-~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKKSY-NLDLWM-LYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TTCHHHHHHHHHHHSTTCC-CHHHHH-HHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCCHHHHHHHHHHHhccCC-CHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 3899999999999999886 444553 4444444444 345677888988874 34 7788888877654 3467
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHH--------------HHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHh
Q psy16607 373 PIRAIDIGRNALDCYPNEVTIMTEMARIF--------------EGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFY 437 (677)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~--------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 437 (677)
.+.+..+|++++...+.+.+-+...-..+ ...+.+..|...|+.+....+. +...|..+...-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88999999999996443333221111111 1112333444444444433222 33344444333222
Q ss_pred CC--C-----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH----
Q psy16607 438 ND--Q-----PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI---- 506 (677)
Q Consensus 438 ~g--~-----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~---- 506 (677)
.+ - .+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+ ...|...+....
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~--~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG--MFLSLYYGLVMDEEAV 261 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS--SHHHHHHHHHTTCTHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc--HHHHHHHHhhcchhHH
Confidence 11 0 234556777777777777777777777777777777777777777777 665 333332222100
Q ss_pred --------------------------Hhhhcc--cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHH
Q psy16607 507 --------------------------LNALST--SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-QYDMVV 557 (677)
Q Consensus 507 --------------------------l~~l~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~ 557 (677)
++.... ..+.++.+.|...|.++ ...+.....|...+.+....+ +.+.|.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 000000 00234566666666666 322234445555555554444 466666
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q psy16607 558 TCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637 (677)
Q Consensus 558 ~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 637 (677)
.+|+.+++ ..|+.+..|...+.... ..|+.+.|...|+++ +.....|........
T Consensus 341 ~ife~al~--~~~~~~~~~~~yid~e~-------------------~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 341 NIFSSGLL--KHPDSTLLKEEFFLFLL-------------------RIGDEENARALFKRL----EKTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 66666666 44555555555555444 666666666666665 234555666666566
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy16607 638 REGHIERASTYLQAAAA 654 (677)
Q Consensus 638 ~~g~~~~A~~~~~~al~ 654 (677)
..|+.+.+...+++++.
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666654
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.39 E-value=1.8e-11 Score=104.30 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 436 (677)
..+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 472 (677)
..|++++|+..+++++...|.++.++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666555443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=1.1e-11 Score=108.10 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=87.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465 (677)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 465 (677)
..|.++..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 466 ALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 466 a~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
|.++...|++++|+..|++++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888777
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.38 E-value=2.7e-12 Score=109.46 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 473 (677)
++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444555554455
Q ss_pred CHHHHHHHHHHHHhhhcc
Q psy16607 474 QYDMVVTCFERALSLALN 491 (677)
Q Consensus 474 ~~~~A~~~~~~al~~~p~ 491 (677)
++++|+..|+++++.+|+
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 555555555554444443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=2.2e-11 Score=102.63 Aligned_cols=111 Identities=9% Similarity=-0.008 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY 437 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 437 (677)
..++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607 438 NDQPEVALLFYRRLLQMGLYNAELFNNLALC 468 (677)
Q Consensus 438 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 468 (677)
.|++++|+..++++++..|.++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555555554443
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.36 E-value=5e-12 Score=114.11 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDC------------------YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 419 (677)
..+...|..++..|++++|+..|++++.. +|.+..++.++|.++..+|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34445555555555555555555555554 455556666777777777777777777777777
Q ss_pred hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHH
Q psy16607 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFY 471 (677)
Q Consensus 420 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~ 471 (677)
++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777766666 445555544443
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=1.5e-11 Score=115.28 Aligned_cols=118 Identities=11% Similarity=-0.076 Sum_probs=51.6
Q ss_pred HcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCChh
Q psy16607 336 SLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEVTIMTEMARIFEGLNNMP 408 (677)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 408 (677)
..|++++|...++......+ ...++..+|.++...|++++|+..+++++.. .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555553333322211 3445555555555555555555555555442 2222334444555555555555
Q ss_pred HHHHHHHHHHHh---Cc----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 409 MSVKYYKLILKR---DA----TCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 409 ~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
+|+.++++++.. .+ ....++..+|.++...|++++|+.++++++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555544444 11 1123344444444444444444444444443
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=1.2e-11 Score=115.98 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=95.3
Q ss_pred cCCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh----cc-chHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQ------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL----NE-NAADVWYNISHVA 583 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~p-~~~~~~~~l~~~~ 583 (677)
..|++++|+..+++++. ..+....++..+|.++...|++++|+.++++++.... ++ ....++.++|.++
T Consensus 38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 44444444444444443 2233456778889999999999999999999988432 22 3356788999999
Q ss_pred HHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS--H----GLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 584 ~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
. ..|++++|+.++++++.+.+. + ..++..+|.++...|++++|+.++++++++..
T Consensus 118 ~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 118 L-------------------HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp H-------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H-------------------HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 8 999999999999999976332 2 24568999999999999999999999999765
Q ss_pred CC
Q psy16607 658 YL 659 (677)
Q Consensus 658 ~~ 659 (677)
..
T Consensus 179 ~~ 180 (203)
T 3gw4_A 179 EL 180 (203)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=1.4e-11 Score=106.22 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA---DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614 (677)
Q Consensus 538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~---~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~ 614 (677)
..++.+|.++...|++++|+..|++++. ..|++. .+++.+|.++. ..|++++|+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~-------------------~~~~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYY-------------------ATRNFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHH-------------------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHH-------------------HhccHHHHHHH
Confidence 3467899999999999999999999999 778777 89999999999 99999999999
Q ss_pred HHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 615 LHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 615 ~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
|++++...|++ +.+++.+|.++...|++++|+..|+++++..|+++.+...+..+....+
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999 8889999999999999999999999999999999988877766655444
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=1.3e-11 Score=106.26 Aligned_cols=119 Identities=10% Similarity=0.077 Sum_probs=109.7
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~ 614 (677)
..+..++.+|.++...|++++|+.+|++++. ..|.+..++..+|.++. ..|++++|+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A~~~ 60 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYF-------------------EKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHH-------------------HhccHHHHHHH
Confidence 3467889999999999999999999999999 78999999999999999 99999999999
Q ss_pred HHHHHccCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607 615 LHLALSIDSSH-------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV 675 (677)
Q Consensus 615 ~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ 675 (677)
+++++...|.+ ..++..+|.++...|++++|+.+|+++++..| ++..+..++.+...++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999998876 88999999999999999999999999999999 68889999888876543
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.32 E-value=5.9e-12 Score=105.14 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=102.3
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607 533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612 (677)
Q Consensus 533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~ 612 (677)
+|+++..+..+|.++...|++++|+.+|++++. ..|.+..++..+|.++. ..|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALY-------------------NLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHH-------------------HccCHHHHH
Confidence 678888999999999999999999999999999 88999999999999999 999999999
Q ss_pred HHHHHHHccCCC--ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCh
Q psy16607 613 QCLHLALSIDSS--HGLSQNNLAVLEARE-GHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 613 ~~~~~al~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 660 (677)
..|+++++..|. +..++..+|.++... |++++|+.++++++...|.++
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999 999999999999999 999999999999999999764
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.32 E-value=3.4e-12 Score=130.26 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHhccCHHHHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA-----------------ELFNNLALCCFYSQQYDMVV 557 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~ 557 (677)
...+..+|..+. ..|++++|+..|++++...|.+. .+++++|.++...|++++|+
T Consensus 179 a~~~~~~g~~~~--------~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 179 ADRRKMDGNSLF--------KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHTC--------SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 667788888887 99999999999999999999887 48999999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH-H
Q psy16607 558 TCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-E 636 (677)
Q Consensus 558 ~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~ 636 (677)
.+|++++. .+|++..+|+++|.+|. .+|++++|+..|+++++++|++..++..++.+ .
T Consensus 251 ~~~~~al~--~~p~~~~a~~~lg~a~~-------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 251 GHCNIVLT--EEEKNPKALFRRGKAKA-------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHH-------------------TTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999 89999999999999999 99999999999999999999999999999998 4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 637 AREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 637 ~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
...+..+++...|.+++...|+++.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 5567889999999999999998764
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.31 E-value=4.8e-12 Score=110.53 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=78.5
Q ss_pred hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC----------HHHHHHHHHHH
Q psy16607 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD----------TRLAIQCLHLA 618 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~----------~~~A~~~~~~a 618 (677)
+.++|++|+..++++++ .+|+++.+|+++|.++. ..++ +++|+..|+++
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~-------------------~l~~~~~g~~al~~~~eAi~~le~A 72 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLL-------------------ELSQFHSISDAKQMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HhcccchhhhhHhHHHHHHHHHHHH
Confidence 34455666666666666 56666666666666555 4433 57999999999
Q ss_pred HccCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607 619 LSIDSSHGLSQNNLAVLEAREG-----------HIERASTYLQAAAASSPYLYETHYNQAVI 669 (677)
Q Consensus 619 l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~ 669 (677)
++++|++.++|+++|.+|..+| ++++|+.+|++|++++|++...+..+..+
T Consensus 73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999885 89999999999999999998877766544
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.31 E-value=3.7e-11 Score=103.46 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHH
Q psy16607 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV---TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGV 433 (677)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 433 (677)
++.+|.++...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555555555555444 455555555555555555555555555555554 445555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHH
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNN 464 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 464 (677)
++...|++++|+..|++++...|+++.+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 5555555555555555555555555444333
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.8e-11 Score=104.77 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=67.9
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHH
Q psy16607 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 464 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 464 (677)
|.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++...|.++.+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4455555555555555666666666666665555554 5555566666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 465 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 465 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
+|.++...|++++|+.+|++++..+|++ ..++..++.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHH
Confidence 6666666666666666666666666655 5555444444
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=1.3e-11 Score=102.95 Aligned_cols=106 Identities=11% Similarity=-0.017 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CHHHHHH
Q psy16607 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY--NAELFNN 464 (677)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~ 464 (677)
+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45556666666667767777777777777777766666666667777777777777777777777776666 6667777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhhccc
Q psy16607 465 LALCCFYS-QQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 465 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 492 (677)
+|.++... |++++|+.++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77777777777776666653
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.29 E-value=8.8e-12 Score=105.60 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=77.5
Q ss_pred ccCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607 550 SQQYDMVVTCFERALSLAL---NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626 (677)
Q Consensus 550 ~g~~~~A~~~~~~al~~~~---~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~ 626 (677)
.|++++|+.+|+++++ . +|++..++..+|.++. ..|++++|+..|+++++.+|+++
T Consensus 3 ~g~~~~A~~~~~~al~--~~~~~p~~~~~~~~lg~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~ 61 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA--SGLQGKDLAECYLGLGSTFR-------------------TLGEYRKAEAVLANGVKQFPNHQ 61 (117)
T ss_dssp ----CCCHHHHHHHHS--SCCCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcHHHHHHHHHHHHH--cCCCCccHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCch
Confidence 5677778888888877 5 4777788888888887 88888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV 673 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 673 (677)
.+++.+|.++...|++++|+..|+++++..|+++........+....
T Consensus 62 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877665554444433
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.29 E-value=5.1e-12 Score=110.33 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=96.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY----------DMVVTCFERALSLALNENAADVWYNISHVAI 584 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~ 584 (677)
+.+.+++|+..++++++.+|+++++|+++|.++...+++ ++|+..|+++++ ++|++..+|+++|.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999875 599999999999 99999999999999998
Q ss_pred HhhcCCCCcccchhhhHHhcC-----------CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607 585 ITECSPFSFSTHTSYLFIQGI-----------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653 (677)
Q Consensus 585 ~~~~~p~~~~~~~~~~~l~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 653 (677)
.+ |++++|+.+|+++++++|++. .|.+++
T Consensus 92 -------------------~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------------------~y~~al 131 (158)
T 1zu2_A 92 -------------------SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------------------HYLKSL 131 (158)
T ss_dssp -------------------HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------------HHHHHH
T ss_pred -------------------HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------------------HHHHHH
Confidence 65 589999999999999999874 445556
Q ss_pred HhCCCChHHHHHHH
Q psy16607 654 ASSPYLYETHYNQA 667 (677)
Q Consensus 654 ~~~p~~~~~~~~la 667 (677)
++.+..++.++.+.
T Consensus 132 ~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 132 EMTAKAPQLHAEAY 145 (158)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHHhCHhccCccc
Confidence 66666666666554
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=4.8e-10 Score=118.70 Aligned_cols=165 Identities=11% Similarity=0.026 Sum_probs=108.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCHHH
Q psy16607 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG------LYNAEL 461 (677)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~ 461 (677)
+..+|.+|...|++++|++++.+++...+.. ..+...++.++...|++++|+.++++++... +....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666666666666666665554332 1233455666666677777777777666532 223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc----cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC---
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL--- 534 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p--- 534 (677)
+..+|.++...|+|++|+.++++++..... .....++..++.++. ..|++++|...+++++...+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH--------KLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH--------HhCcHHHHHHHHHHHHHHhhcCC
Confidence 677777777777777777777776654221 123566777777776 77888888888777775422
Q ss_pred Cc----HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607 535 YN----AELFNNLALCCFYSQQYDMVVTCFERALSL 566 (677)
Q Consensus 535 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 566 (677)
.. ...+..+|.++...++|++|..+|.+++..
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 345677888888999999999999998874
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.27 E-value=7.7e-12 Score=127.63 Aligned_cols=153 Identities=12% Similarity=0.009 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607 324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403 (677)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (677)
...+..+|..++..|++++|+..|++++...|+... +...+++.++...+. ..++.++|.++..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~ 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 334468888888888888888888888888773321 122333444433221 2478888999999
Q ss_pred cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy16607 404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC-CFYSQQYDMVVTCF 482 (677)
Q Consensus 404 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~ 482 (677)
+|++++|+.+|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+++...|
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999888888888888 44566778888888
Q ss_pred HHHHhhhccc
Q psy16607 483 ERALSLALNE 492 (677)
Q Consensus 483 ~~al~~~p~~ 492 (677)
.+++...|.+
T Consensus 323 ~~~l~~~p~~ 332 (338)
T 2if4_A 323 KGIFKGKDEG 332 (338)
T ss_dssp ----------
T ss_pred HHhhCCCCCC
Confidence 8888888765
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.26 E-value=1.7e-12 Score=139.02 Aligned_cols=134 Identities=8% Similarity=0.077 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN 438 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 438 (677)
.+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..+++.+|.+|...
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhhccc
Q psy16607 439 DQPEVALLFYRRLLQMGLYNAELFNNLALC--CFYSQQYDMVVTCFE-----------RALSLALNE 492 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 492 (677)
|++++|++.|+++++.+|++..++..++.+ +...|++++|+..++ +++...|+.
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999988888888888 888899999999999 777666654
No 184
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.26 E-value=2.4e-09 Score=114.60 Aligned_cols=319 Identities=9% Similarity=-0.029 Sum_probs=201.8
Q ss_pred cc-CHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCC-hHHHHHH
Q psy16607 302 EN-DVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQ-PIRAIDI 379 (677)
Q Consensus 302 ~g-~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~-~~~A~~~ 379 (677)
.| ++..|..+|++++...|. |+++.+..+|++++...|+.+.|........+.+. .+.....
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~----------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS----------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC----------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 46 488899999999988864 99999999999999988999999888888777763 4556778
Q ss_pred HHHHHHc---CCCcHHHHHHHHHHHH----HcCChhHHHHHHHHHHHhCcCCHHHHHH-HHHHH-------------HhC
Q psy16607 380 GRNALDC---YPNEVTIMTEMARIFE----GLNNMPMSVKYYKLILKRDATCMEAIAC-IGVNH-------------FYN 438 (677)
Q Consensus 380 ~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~-------------~~~ 438 (677)
|+.++.. +|.+..+|......+. ..++.+.+...|++++...+.+..-+.. ....- ...
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 8888874 6778889988887654 3467889999999999964434332222 21111 111
Q ss_pred CChHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhh
Q psy16607 439 DQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYS--QQ-----YDMVVTCFERALSLALNENAADVWYNISHVAILNAL 510 (677)
Q Consensus 439 g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l 510 (677)
..+..|...|+.+....+. +...|......-... |- .+.....|++++...|.. +..|...+..+.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~--~~lW~~ya~~~~---- 224 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA--EEVYFFYSEYLI---- 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHH----
Confidence 2344455556555544332 344565544432211 11 345678999999999998 999999999888
Q ss_pred cccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-----------hccchHHHHHHH
Q psy16607 511 STSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----------LNENAADVWYNI 579 (677)
Q Consensus 511 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------~~p~~~~~~~~l 579 (677)
..|+.++|...|++++.. |.+...|...+... ..+ +. +++..+.. ..+....+|...
T Consensus 225 ----~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 225 ----GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp ----HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHHHTC----------CHHHHHHHHHHH
T ss_pred ----HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 889999999999999999 99877776554431 111 11 11111100 011223455555
Q ss_pred HHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC
Q psy16607 580 SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSPY 658 (677)
Q Consensus 580 ~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~ 658 (677)
+.... +.++.+.|...|+++ ...+....+|...+.+....| +.+.|..+|+.+++..|+
T Consensus 293 ~~~~~-------------------r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 293 LNYVL-------------------KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp HHHHH-------------------HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred HHHHH-------------------HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 55554 555666666666666 322223445555555555444 466666666666666666
Q ss_pred ChHHHHHHHHHHHhcC
Q psy16607 659 LYETHYNQAVISNLVS 674 (677)
Q Consensus 659 ~~~~~~~la~~~~~~G 674 (677)
.++.+...+......|
T Consensus 353 ~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIG 368 (493)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 6655554444444444
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=7e-11 Score=101.55 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-------HHHHHH
Q psy16607 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-------MEAIAC 430 (677)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~ 430 (677)
..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++...|.+ ..+++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4556666666666667777777766666666666666667777767777777777777766666655 666666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471 (677)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 471 (677)
+|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 66666666666666666666666665 45555555555443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.25 E-value=8.8e-12 Score=133.38 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=115.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
+..|++++|+..|+++++.+|.+..++.++|.++..+|++++|+..|+++++ .+|++..+++++|.+|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~--------- 85 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM--------- 85 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHH---------
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH---------
Confidence 3899999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCCh
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL--EAREGHIERASTYLQ-----------AAAASSPYLY 660 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~ 660 (677)
.+|++++|+..|+++++++|++..++..++.+ +...|++++|++.++ +++.++|+..
T Consensus 86 ----------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 86 ----------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp ----------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred ----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999999999999999999999998 889999999999999 8888877654
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.6e-10 Score=122.39 Aligned_cols=219 Identities=13% Similarity=0.047 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 472 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 472 (677)
.....|..+...|++++|++.|.++++..|........ .+......... ..++..+|.+|...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~----------~~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-------ASVDDKRRNEQ----------ETSILELGQLYVTM 68 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-------SSBCSHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-------HHHHHHHhhhH----------HHHHHHHHHHHHHC
Confidence 34455666666667777777776666666543221110 01111111111 12456778888888
Q ss_pred CCHHHHHHHHHHHHhhhcccc----hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc------CCCcHHHHHH
Q psy16607 473 QQYDMVVTCFERALSLALNEN----AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM------GLYNAELFNN 542 (677)
Q Consensus 473 g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 542 (677)
|++++|++++.+++...+... ...+...++.++. ..|++++|+.++++++.. .+....++..
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ--------VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS--------CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 888888888888777655431 1223445555554 678889999998888753 2334678899
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 543 LALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 543 la~~~~~~g~~~~A~~~~~~al~~~~----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
+|.++...|+|++|+.++++++.... .+....++..++.+|. ..|++++|...++++
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-------------------KLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-------------------HhCcHHHHHHHHHHH
Confidence 99999999999999999999987532 2345678999999998 999999999999999
Q ss_pred HccCCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607 619 LSIDSS---H----GLSQNNLAVLEAREGHIERASTYLQAAAAS 655 (677)
Q Consensus 619 l~~~p~---~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 655 (677)
+...+. . ...+..+|.++...|++++|..+|.++++.
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 202 RTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 876432 2 356778899999999999999999999875
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.24 E-value=7.2e-11 Score=121.73 Aligned_cols=137 Identities=9% Similarity=0.013 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607 327 KVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN 406 (677)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (677)
+..+|..++..|++++|+..|+++++..+... ............|.+..++.++|.++.++|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 288 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLKMSD 288 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46778888888888888888888776432110 0111233344666677788888888888888
Q ss_pred hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607 407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 480 (677)
Q Consensus 407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 480 (677)
+++|+.+++++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.21 E-value=1.2e-10 Score=120.07 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ----------------MGLYNAELFNNLALCCFYSQQYDMVVT 558 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~ 558 (677)
...+..+|..+. ..|++++|+..|+++++ .+|.+..++.++|.++.++|++++|+.
T Consensus 223 a~~~~~~g~~~~--------~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFF--------KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 566788899988 99999999999999998 344444444445555555555555555
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607 559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638 (677)
Q Consensus 559 ~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 638 (677)
+++++++ .+|++..+++.+|.+|. .+|++++|+..|+++++++|++..++..++.++..
T Consensus 295 ~~~~al~--~~p~~~~a~~~lg~~~~-------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 295 SCLEALE--IDPSNTKALYRRAQGWQ-------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHT--TCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCchhHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5555444 44444444444444444 44455555555555544444444444444444444
Q ss_pred cCCHHHH
Q psy16607 639 EGHIERA 645 (677)
Q Consensus 639 ~g~~~~A 645 (677)
.++++++
T Consensus 354 ~~~~~~a 360 (370)
T 1ihg_A 354 IKAQKDK 360 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.21 E-value=1.7e-11 Score=103.82 Aligned_cols=90 Identities=7% Similarity=-0.019 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607 371 DQPIRAIDIGRNALDC---YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 371 g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 447 (677)
|++++|+..|+++++. +|++..++..+|.++...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444 2444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHcCCCCHH
Q psy16607 448 YRRLLQMGLYNAE 460 (677)
Q Consensus 448 ~~~al~~~~~~~~ 460 (677)
+++++...|.++.
T Consensus 84 ~~~al~~~p~~~~ 96 (117)
T 3k9i_A 84 LLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHhCCCcHH
Confidence 4444444444443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.20 E-value=1.5e-10 Score=103.55 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HH
Q psy16607 359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------ME 426 (677)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 426 (677)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.++++++...+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34444444444444444444444444432211 1244555555555555555555555555543321 44
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
++..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+.++++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666665422 1235677788888888888888888888877654
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=2.3e-10 Score=102.34 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLAL 568 (677)
Q Consensus 495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 568 (677)
..++..+|.++. ..|++++|+..++++++..+.. ..++..+|.++...|++++|+.++++++....
T Consensus 9 ~~~~~~l~~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHY--------LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 667889999998 8999999999999999765533 25889999999999999999999999998542
Q ss_pred ccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHH
Q psy16607 569 NEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEAR 638 (677)
Q Consensus 569 ~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~ 638 (677)
... ...++..+|.++. ..|++++|+.++++++...+. ...++..+|.++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYT-------------------LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 221 2567889999998 999999999999999976432 24678899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q psy16607 639 EGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 639 ~g~~~~A~~~~~~al~~~p~~ 659 (677)
.|++++|+.++++++++....
T Consensus 142 ~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HTCHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999876543
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.07 E-value=1.2e-09 Score=87.30 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=81.8
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 649 (677)
Q Consensus 570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 649 (677)
+....+++.+|.++. ..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|
T Consensus 6 ~~~~~~~~~la~~~~-------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 6 GNSAEAWYNLGNAYY-------------------KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp CHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356788999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 650 QAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 650 ~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
+++++++|++..++.++|.++...|
T Consensus 67 ~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 67 QKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999998876
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.2e-09 Score=89.27 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 572 AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651 (677)
Q Consensus 572 ~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 651 (677)
....+..+|.++. ..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|++
T Consensus 3 ~~~~~~~~g~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLF-------------------KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHH-------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4577888999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCC------hHHHHHHHHHHHhcCCC
Q psy16607 652 AAASSPYL------YETHYNQAVISNLVSVI 676 (677)
Q Consensus 652 al~~~p~~------~~~~~~la~~~~~~G~i 676 (677)
+++++|++ ..+++.+|.++..+|..
T Consensus 64 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 64 GLRYTSTAEHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999 89999999999988864
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.00 E-value=2.2e-09 Score=90.22 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607 409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488 (677)
Q Consensus 409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 488 (677)
+|+..|+++++.+|.+..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred hccc
Q psy16607 489 ALNE 492 (677)
Q Consensus 489 ~p~~ 492 (677)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6643
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.99 E-value=3e-09 Score=89.43 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634 (677)
Q Consensus 555 ~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 634 (677)
+|+..|++++. .+|++..+++.+|.++. ..|++++|+..|++++..+|.+..+++.+|.
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYA-------------------EHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 57889999998 88999999999999999 9999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcC
Q psy16607 635 LEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLVS 674 (677)
Q Consensus 635 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~G 674 (677)
++...|++++|+..|++++++.|.+ ......+...+..+|
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999999999999998854 455555555554443
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.8e-10 Score=94.79 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~ 615 (677)
++..+..+|.++...|++++|+..|++++. .+|+++.++.++|.++. ..|++++|+..|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALI-------------------KLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-------------------HhcCHHHHHHHH
Confidence 467889999999999999999999999999 89999999999999999 999999999999
Q ss_pred HHHHccCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 616 HLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQA 651 (677)
Q Consensus 616 ~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 651 (677)
+++++++|++ ..+++.+|.++...|++++|+..+++
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999998 88999999999999988887766654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.94 E-value=7.9e-09 Score=82.31 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
+..++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34455555666666666666666666666666655555666666666666666666666666666666666665555555
Q ss_pred HHc
Q psy16607 470 FYS 472 (677)
Q Consensus 470 ~~~ 472 (677)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.93 E-value=5.3e-09 Score=85.40 Aligned_cols=90 Identities=8% Similarity=-0.039 Sum_probs=77.7
Q ss_pred hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy16607 568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 647 (677)
Q Consensus 568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 647 (677)
.+|+++.+|+.+|.++. ..|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHL-------------------KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp ---CCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCccCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 46899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC--hHHHHHHHHHHHhcCCC
Q psy16607 648 YLQAAAASSPYL--YETHYNQAVISNLVSVI 676 (677)
Q Consensus 648 ~~~~al~~~p~~--~~~~~~la~~~~~~G~i 676 (677)
.|++++++.|.. ......+..++...|..
T Consensus 63 ~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHcccc
Confidence 999999998754 45566666666665543
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=3.1e-08 Score=86.22 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~ 596 (677)
+++++|+.+|+++.+....... +|.+|...+.+++|+.+|+++.+ ..++.+.+++|.+|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~----~g~~~a~~~Lg~~y~------------ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACE----LNSGNGCRFLGDFYE------------ 68 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHH------------
Confidence 5789999999999988754444 99999999999999999999987 378899999999997
Q ss_pred hhhhHHhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607 597 TSYLFIQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAV 668 (677)
Q Consensus 597 ~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 668 (677)
. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .++.+..+|+.
T Consensus 69 -------~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 69 -------NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp -------HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred -------cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 7 89999999999999986 679999999999999 89999999999999987 45666666653
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=2.9e-08 Score=80.92 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=44.0
Q ss_pred CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 421 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 45566666666666666666666666666666666666666666666666666666666666666665544
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=7e-09 Score=84.35 Aligned_cols=91 Identities=9% Similarity=0.054 Sum_probs=74.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAAD-VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~-~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al 619 (677)
+.+|.++...|++++|+..|+++++ .+|++.. +++.+|.++. ..|++++|+..|++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~-------------------~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYR-------------------KLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHH
Confidence 4577888888888888888888888 7888888 8888888888 8888888888888888
Q ss_pred ccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607 620 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660 (677)
Q Consensus 620 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 660 (677)
+++|++..++.+ +.+.+++..|+++...+|++.
T Consensus 63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 888888877644 567778888888877777654
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.75 E-value=1.8e-08 Score=81.89 Aligned_cols=88 Identities=9% Similarity=0.086 Sum_probs=47.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCcCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q psy16607 396 EMARIFEGLNNMPMSVKYYKLILKRDATCME-AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474 (677)
Q Consensus 396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 474 (677)
..|.++...|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|+++++.+|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3455555555555555555555555555555 55555555555555555555555555555555544422 34
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy16607 475 YDMVVTCFERALSLALN 491 (677)
Q Consensus 475 ~~~A~~~~~~al~~~p~ 491 (677)
+.+++..|+++...+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 44555555555555544
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.75 E-value=2e-07 Score=81.05 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh----CCChHHHHHH
Q psy16607 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLF 447 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 447 (677)
++++|+.+|+++.+..... +. +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4556666666666554322 22 666666666666666666666654 456666666666666 5666666666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q psy16607 448 YRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSL 488 (677)
Q Consensus 448 ~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 488 (677)
|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6666655 456666666666666 66666777776666665
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.71 E-value=1.6e-07 Score=99.65 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=104.6
Q ss_pred cCCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHh------hccchHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQM-----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA------LNENAADVWYNIS 580 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~p~~~~~~~~l~ 580 (677)
.+|++++|+..++++++. .+++ ..++.++|.+|..+|+|++|+.++++++... ..|+....++++|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 789999999999999953 3444 5678999999999999999999999999853 1245557789999
Q ss_pred HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-----DSSHG---LSQNNLAVLEAREGHIERASTYLQAA 652 (677)
Q Consensus 581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a 652 (677)
.+|. .+|++++|+.+|++++++ .|+++ +....++.++..+|.+++|...|+++
T Consensus 401 ~~~~-------------------~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 401 LTNW-------------------HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------------------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999974 56665 45678999999999999999999998
Q ss_pred HHhC
Q psy16607 653 AASS 656 (677)
Q Consensus 653 l~~~ 656 (677)
.+..
T Consensus 462 ~~~~ 465 (490)
T 3n71_A 462 REAA 465 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.70 E-value=3.9e-07 Score=90.90 Aligned_cols=125 Identities=13% Similarity=0.020 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH----HHHHH----HHHHHHHHhhccchHHHHHHHHHHHHHhhc
Q psy16607 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY----DMVVT----CFERALSLALNENAADVWYNISHVAIITEC 588 (677)
Q Consensus 517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~----~~~~al~~~~~p~~~~~~~~l~~~~~~~~~ 588 (677)
....+|+.+|+++++.+|+++.++..++.++.....+ ..... .++.+......|..+.++..++..+.
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l---- 288 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL---- 288 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH----
Confidence 4468999999999999999999999888888632111 11112 22222222356888899999988887
Q ss_pred CCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607 589 SPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661 (677)
Q Consensus 589 ~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 661 (677)
..|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 289 ---------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 289 ---------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp ---------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ---------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 889999999999999999974 678889999999999999999999999999998864
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.69 E-value=9.4e-08 Score=101.36 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=91.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----CcC---CHHH
Q psy16607 364 IRVYIRLDQPIRAIDIGRNALDC-----YPNEV---TIMTEMARIFEGLNNMPMSVKYYKLILKR-----DAT---CMEA 427 (677)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~ 427 (677)
+..+..+|++++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.. .|+ ....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 33455667777777777777654 23343 45677788888888888888888887765 233 3556
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607 428 IACIGVNHFYNDQPEVALLFYRRLLQM-----GLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 489 (677)
+.+||.+|..+|++++|+.+|++++++ .|+++ ....+++.++..++.+++|...|.++.+..
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888763 45554 456778888889999999999998886644
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=1.2e-06 Score=83.65 Aligned_cols=108 Identities=14% Similarity=0.005 Sum_probs=92.6
Q ss_pred HcCCCcHHHHHHHHHHHHh---c--c------CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhcCCCCcccch
Q psy16607 531 QMGLYNAELFNNLALCCFY---S--Q------QYDMVVTCFERALSLALNEN--AADVWYNISHVAIITECSPFSFSTHT 597 (677)
Q Consensus 531 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~ 597 (677)
+.+|++++.++..|.+... . | ...+|...++++++ ++|+ +..+|..+|.+|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~------------- 210 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA------------- 210 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH-------------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH-------------
Confidence 5678888887777766533 1 2 34789999999999 8998 6779999999997
Q ss_pred hhhHHhc-----CCCHHHHHHHHHHHHccCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q psy16607 598 SYLFIQG-----ISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAR-EGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 598 ~~~~l~~-----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 659 (677)
. -|+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus 211 ------~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 211 ------AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp ------HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ------hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 6 499999999999999999975 9999999999988 499999999999999988873
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.63 E-value=5.8e-07 Score=89.65 Aligned_cols=135 Identities=8% Similarity=-0.037 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh----hHHHHHHHH------HHHhCc
Q psy16607 356 DIEAFIRMIRVYIRLDQ---PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM----PMSVKYYKL------ILKRDA 422 (677)
Q Consensus 356 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~------al~~~p 422 (677)
...-++..|..+...+. ..+|+.+|+++++++|+...++..++.+|.....+ ......+.+ ++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 44455666777666544 47889999999999999988888888777621100 000011110 112234
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607 423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491 (677)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 491 (677)
.++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|++++|++.|++|+.++|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444444444444444555555555555555543 2344444455555555555555555555555444
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.57 E-value=6.7e-07 Score=85.34 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=91.6
Q ss_pred hhcccchHHHHHHHHHHHHHhhh---cccccCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhc-----cCHHHHH
Q psy16607 488 LALNENAADVWYNISHVAILNAL---STSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYS-----QQYDMVV 557 (677)
Q Consensus 488 ~~p~~~~~~~~~~l~~~~~l~~l---~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~ 557 (677)
.+|++ .+.++-.|.++.-+.. ...-..+....|...++++++++|+ +..+|..+|.+|... |+.++|.
T Consensus 147 ~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 147 CTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp CCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred cCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 35555 6666666655531111 1112334568999999999999999 677999999999995 9999999
Q ss_pred HHHHHHHHHhhccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhc-CCCHHHHHHHHHHHHccCCCC
Q psy16607 558 TCFERALSLALNENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQG-ISDTRLAIQCLHLALSIDSSH 625 (677)
Q Consensus 558 ~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~-~g~~~~A~~~~~~al~~~p~~ 625 (677)
.+|+++++ ++|+. ...++..|..+. . .|++++|..++++++..+|..
T Consensus 225 ~~ferAL~--LnP~~~id~~v~YA~~l~-------------------~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTR--YCSAHDPDHHITYADALC-------------------IPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHH--HCCTTCSHHHHHHHHHTT-------------------TTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHH--hCCCCCchHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999 89975 999999999887 6 599999999999999988874
No 211
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.57 E-value=1.1e-05 Score=86.17 Aligned_cols=169 Identities=11% Similarity=0.024 Sum_probs=131.7
Q ss_pred HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHccC--CCHHHHHHHHHHH
Q psy16607 299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG---------LIREAQQQFNSALNQF--TDIEAFIRMIRVY 367 (677)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~--p~~~~~~~la~~~ 367 (677)
+.+.|++++|+++|+++.+..-..+...+..+-.++...+ ..++|..+|+++.... |+..+|..+...|
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6778999999999999988765556666666666665544 3788999999888754 6889999999999
Q ss_pred HHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhCCChHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVAL 445 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~ 445 (677)
.+.|++++|..+|+++.+.. ..+...|..+...|.+.|+.++|.++|+++.+..-. +...+..+...+.+.|+.++|.
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence 99999999999999887653 236778888888999999999999999998876432 6778888899999999999999
Q ss_pred HHHHHHHHcCC-CCHHHHHHHHH
Q psy16607 446 LFYRRLLQMGL-YNAELFNNLAL 467 (677)
Q Consensus 446 ~~~~~al~~~~-~~~~~~~~la~ 467 (677)
++++++.+..- -+...+..+-.
T Consensus 196 ~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 196 KTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp HHHHHHHHHTSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHH
Confidence 99998876432 23344444433
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.47 E-value=3.1e-05 Score=82.74 Aligned_cols=168 Identities=7% Similarity=0.028 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHcC-CCCHHHHH
Q psy16607 395 TEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQ---------PEVALLFYRRLLQMG-LYNAELFN 463 (677)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-~~~~~~~~ 463 (677)
..+-..+.+.|+.++|+++|+++.+..- -+..+|..+..++...+. .++|.++|+++.... ..+...+.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3334445555555555555555544321 134444444444443332 455666666665543 22555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CCcHHHH
Q psy16607 464 NLALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LYNAELF 540 (677)
Q Consensus 464 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 540 (677)
.+...|.+.|++++|..+|+++.... |+ ...|..+...+. +.|+.++|.+.|+++.+.. ..+...|
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~--------~~g~~~~A~~l~~~M~~~G~~Pd~~ty 178 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFC--------RKGDADKAYEVDAHMVESEVVPEEPEL 178 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHH--------HCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 66666666677777776666665542 33 555666666665 6677777777777666442 2345566
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAA 573 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 573 (677)
..+..++.+.|+.++|..+|+++.+....|+..
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 677777777777777777777776655555543
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=1.6e-06 Score=74.75 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC---CHHHHHHHHHHHHccC-C-CChH
Q psy16607 553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS---DTRLAIQCLHLALSID-S-SHGL 627 (677)
Q Consensus 553 ~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g---~~~~A~~~~~~al~~~-p-~~~~ 627 (677)
...+.+.|.+.+. .++.+.++.+++|.++. +.+ +.++++..++..++.+ | ++.+
T Consensus 14 l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv-------------------~S~~~~~~~~gI~lLe~ll~~~~p~~~rd 72 (152)
T 1pc2_A 14 LLKFEKKFQSEKA--AGSVSKSTQFEYAWCLV-------------------RSKYNDDIRKGIVLLEELLPKGSKEEQRD 72 (152)
T ss_dssp HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHH-------------------TCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHc--cCCCcHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence 3556667777766 67788899999999998 888 6779999999999998 6 5689
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 628 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 628 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
.++++|..+.+.|+|++|+.+++++++++|++..+....-.+-
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887655544
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=3.1e-06 Score=72.85 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=87.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhc-c-chHHHHHHHHHHHHHhhcC
Q psy16607 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALN-E-NAADVWYNISHVAIITECS 589 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~-p-~~~~~~~~l~~~~~~~~~~ 589 (677)
..+....+.+.|.+.+..++.+.++.+++|+++.+.+ +.++++.+++..++ .+ | +..++++++|..+.
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~~~p~~~rd~lY~LAv~~~----- 82 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNY----- 82 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHH-----
Confidence 3345667788888888889999999999999999988 67799999999999 66 7 67899999999999
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 635 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 635 (677)
+.|+|++|+++++++++++|++..+...+-.+
T Consensus 83 --------------kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 83 --------------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp --------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999999999998877655444
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=2.2e-06 Score=68.18 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 388 PNEVTIMTEMARIFEGLNN---MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 388 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
|++++++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4444455555544443333 345555555555555555555555555555555555555555555544444
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.33 E-value=3.2e-06 Score=67.28 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=67.6
Q ss_pred CcCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 421 DATCMEAIACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 421 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+|+++..+..+|.+++..++ .++|..+++++++.+|+++.++..+|..++..|+|++|+.+++++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 58899999999999976665 7999999999999999999999999999999999999999999999998875
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.28 E-value=7.4e-06 Score=66.91 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~ 610 (677)
++.-++.+|..++..++|..|+.+|++|+.... .+....++..+|.++. ++|++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-------------------~~g~~~~ 64 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-------------------QQGDLDK 64 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-------------------HTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-------------------HccCHHH
Confidence 456788999999999999999999999998532 2356789999999999 9999999
Q ss_pred HHHHHHHHHccCCCChHHHHHHHH
Q psy16607 611 AIQCLHLALSIDSSHGLSQNNLAV 634 (677)
Q Consensus 611 A~~~~~~al~~~p~~~~~~~~la~ 634 (677)
|+.++++++++.|++..+..+++.
T Consensus 65 A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 65 ALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHhhHHH
Confidence 999999999999999999888873
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.27 E-value=7.2e-06 Score=66.99 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC-------CCChHHHHHHHHHHHHcCCHHHH
Q psy16607 573 ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID-------SSHGLSQNNLAVLEAREGHIERA 645 (677)
Q Consensus 573 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A 645 (677)
+.-.+.+|..+. ..|+|..|+..|+++++.. +..+.++..+|.++.++|++++|
T Consensus 5 a~dc~~lG~~~~-------------------~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A 65 (104)
T 2v5f_A 5 AEDCFELGKVAY-------------------TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65 (104)
T ss_dssp HHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH-------------------HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHH
Confidence 344567888887 9999999999999999853 34578899999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 646 STYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 646 ~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
+.+++++++++|++..+..+++.+.
T Consensus 66 ~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 66 LLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 9999999999999999998888443
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.20 E-value=7.2e-06 Score=85.45 Aligned_cols=97 Identities=10% Similarity=-0.079 Sum_probs=79.8
Q ss_pred hccCHHHHHHHHHHHHHHh---hcc---chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-
Q psy16607 549 YSQQYDMVVTCFERALSLA---LNE---NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI- 621 (677)
Q Consensus 549 ~~g~~~~A~~~~~~al~~~---~~p---~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~- 621 (677)
..|+|++|+..+++++++. ..| .....+.++|.+|. .+|+|++|+.++++++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-------------------~~g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-------------------YMQDWEGALKYGQKIIKPY 370 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-------------------hhcCHHHHHHHHHHHHHHH
Confidence 4578999999999998853 223 44567889999998 999999999999999974
Q ss_pred ----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHH
Q psy16607 622 ----DSSHG---LSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYETHY 664 (677)
Q Consensus 622 ----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 664 (677)
.|+++ ..+++||.+|..+|++++|+.+|++|+++ .|+++...-
T Consensus 371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 45554 56899999999999999999999999984 688876543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.13 E-value=1.7e-05 Score=82.70 Aligned_cols=111 Identities=12% Similarity=-0.010 Sum_probs=88.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHh---hcc---chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607 544 ALCCFYSQQYDMVVTCFERALSLA---LNE---NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL 617 (677)
Q Consensus 544 a~~~~~~g~~~~A~~~~~~al~~~---~~p---~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~ 617 (677)
..-+...|+|++|+..++++++.. ..| .....+.+++.+|. .+|+|++|+.++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-------------------~~g~~~eA~~~~~~ 354 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-------------------NLGLLEEALFYGTR 354 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-------------------hhccHHHHHHHHHH
Confidence 334557789999999999999742 123 44567889999998 99999999999999
Q ss_pred HHcc-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChH---HHHHHHHHHHhc
Q psy16607 618 ALSI-----DSSHG---LSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---THYNQAVISNLV 673 (677)
Q Consensus 618 al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~ 673 (677)
++.+ .|+++ ..+++||.+|..+|++++|+.+|++|+++ .|+++. .+.+|+.+...+
T Consensus 355 ~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 355 TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9974 45554 56899999999999999999999999984 677764 456677666543
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.06 E-value=2.1e-05 Score=81.96 Aligned_cols=96 Identities=15% Similarity=0.255 Sum_probs=80.3
Q ss_pred cCCCHHHHHHHHHHHHH-----cCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHhh------ccchHHHHHHHH
Q psy16607 515 YNDQPEVALLFYRRLLQ-----MGLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLAL------NENAADVWYNIS 580 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al~-----~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~p~~~~~~~~l~ 580 (677)
..|++++|+..++++++ +.|+++ ..+.++|.+|..+|+|++|+.++++++.... .|+....++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56899999999999995 345554 5788999999999999999999999998531 345556799999
Q ss_pred HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-----CCCChHHH
Q psy16607 581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-----DSSHGLSQ 629 (677)
Q Consensus 581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 629 (677)
.+|. .+|++++|+.+|++++++ .|+++.+.
T Consensus 390 ~~~~-------------------~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYM-------------------GLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHH-------------------hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999 999999999999999974 67776554
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.05 E-value=1.7e-05 Score=82.77 Aligned_cols=86 Identities=6% Similarity=-0.030 Sum_probs=50.0
Q ss_pred HHcCChHHHHHHHHHHHHcC-----CCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----CcC---CHHHHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCY-----PNEV---TIMTEMARIFEGLNNMPMSVKYYKLILKR-----DAT---CMEAIACI 431 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~l 431 (677)
..+|++++|+..+++++++. |+++ ..+.++|.+|..+|+|++|+.++++++.. .|+ ....++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34556666666666665432 3332 34556666666666666666666666654 222 24455666
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q psy16607 432 GVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 432 a~~~~~~g~~~~A~~~~~~al~ 453 (677)
|.+|..+|++++|+.+|+++++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 6666666666666666666665
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.83 E-value=0.00012 Score=61.74 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=95.3
Q ss_pred HcCCCcHHHHHHHHHHHHhccCH------HHHHHHHHHHHHHhhccch-------HHHHHHHHHHHHHhhcCCCCcccch
Q psy16607 531 QMGLYNAELFNNLALCCFYSQQY------DMVVTCFERALSLALNENA-------ADVWYNISHVAIITECSPFSFSTHT 597 (677)
Q Consensus 531 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~p~~-------~~~~~~l~~~~~~~~~~p~~~~~~~ 597 (677)
-+.|++++.|......+.+.|+. ++-++.|++|+.. ..|.. ...|...+..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~--------------- 70 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL--------------- 70 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH---------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH---------------
Confidence 35799999999999999999999 8899999999983 23322 2334444433
Q ss_pred hhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607 598 SYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS 674 (677)
Q Consensus 598 ~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G 674 (677)
...++.++|.+.|+.++.+....+.+|...|....++|+...|...+.+++.+.|...+.+ ..|..-.+.|
T Consensus 71 -----~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~ 141 (161)
T 4h7y_A 71 -----KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQ 141 (161)
T ss_dssp -----HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTT
T ss_pred -----HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcC
Confidence 3679999999999999998888889999999999999999999999999999999876544 3444444444
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.81 E-value=0.00029 Score=58.22 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH---HHHHHHHHHccC-C-CCh
Q psy16607 552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL---AIQCLHLALSID-S-SHG 626 (677)
Q Consensus 552 ~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~---A~~~~~~al~~~-p-~~~ 626 (677)
....+...|.+... .++....+.+++++++. +..+... ++..++..+..+ | ...
T Consensus 16 ~l~~~~~~y~~e~~--~~~~s~~~~F~yAw~Lv-------------------~S~~~~d~~~GI~lLe~l~~~~~p~~~R 74 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLV-------------------RTRYNDDIRKGIVLLEELLPKGSKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHT-------------------TSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence 34455666666665 56677888999999887 7777665 999999999876 4 456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 670 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 670 (677)
+.++.||..+++.|+|++|+.+++.+++..|++..+......+-
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999998877655544
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.75 E-value=0.0004 Score=57.44 Aligned_cols=97 Identities=9% Similarity=0.057 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHhhc-c-chHHHHHHHHHHHHHhhcCCCC
Q psy16607 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM---VVTCFERALSLALN-E-NAADVWYNISHVAIITECSPFS 592 (677)
Q Consensus 518 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~-p-~~~~~~~~l~~~~~~~~~~p~~ 592 (677)
....+...|.+.+..++.+..+.+++|+++.+..+..+ ++.+++..+. .. | ...+.++.+|..+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~y-------- 85 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNY-------- 85 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHH--------
Confidence 34566677777778788999999999999999987766 9999999887 44 5 56789999999998
Q ss_pred cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q psy16607 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 635 (677)
Q Consensus 593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 635 (677)
+.|+|++|+.+++.+++..|++..+......+
T Consensus 86 -----------klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 86 -----------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999998877655444
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.67 E-value=0.0009 Score=56.47 Aligned_cols=106 Identities=8% Similarity=-0.093 Sum_probs=84.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHhCcCC--------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607 386 CYPNEVTIMTEMARIFEGLNNM------PMSVKYYKLILKRDATC--------MEAIACIGVNHFYNDQPEVALLFYRRL 451 (677)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (677)
..|++++.|........+.|+. ++-++.|++++..-|.. ...|...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4688888888888888888888 78888888888776532 4455555644 4558899999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 452 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
++.....+.+|...|..-.++|+...|.+.+.+++.+.|.+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 88877778889999999999999999999999999998886
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.20 E-value=0.0031 Score=54.57 Aligned_cols=134 Identities=11% Similarity=0.010 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC---C
Q psy16607 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT---C 424 (677)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 424 (677)
..+++.-...++..|.|+.|+-....++....++ ..++..+|.+++..++|..|...|+++++.... .
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677778888899999998888876654322 237788999999999999999999998765331 2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607 425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504 (677)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 504 (677)
......++. ...+.. ... .+.+.++.+.++.||.+.+++++|+..++..-..... +.+-..+|..
T Consensus 100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt---~kvnm~LakL 164 (167)
T 3ffl_A 100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT---PKINMLLANL 164 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC---HHHHHHHHHH
T ss_pred CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC---HHHHHHHHHH
Confidence 111111110 000000 011 1345678899999999999999999998875444333 5566666655
Q ss_pred H
Q psy16607 505 A 505 (677)
Q Consensus 505 ~ 505 (677)
|
T Consensus 165 y 165 (167)
T 3ffl_A 165 Y 165 (167)
T ss_dssp C
T ss_pred h
Confidence 4
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.0017 Score=56.23 Aligned_cols=58 Identities=10% Similarity=-0.010 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC---C-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQF---T-------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (677)
+.-...++..|.|+.|+-....++... + ...++..+|.+++..++|..|...|+++++
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444555555555555555555544322 1 123455556666666666666666665543
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.92 E-value=0.012 Score=48.68 Aligned_cols=80 Identities=6% Similarity=-0.072 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16607 321 FRDWWWKVQLGKCYFSLGLI---REAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT 395 (677)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (677)
.......+.+|.++.+..+. .+++.+++..++..| ..+.++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 44556668888888887653 468888888887777 5678888888888888888888888888888888877665
Q ss_pred HHHHH
Q psy16607 396 EMARI 400 (677)
Q Consensus 396 ~la~~ 400 (677)
....+
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.83 E-value=0.021 Score=47.94 Aligned_cols=73 Identities=7% Similarity=-0.058 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16607 323 DWWWKVQLGKCYFSLGLI---REAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT 395 (677)
Q Consensus 323 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (677)
.....+.+|.++.+..+. .+++.+++..+...| ..+.++.+|..++++|+|.+|..+.+.+++..|++..+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 334445666666655432 345555655555554 3455555556666666666666666666666655555443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.77 E-value=0.056 Score=45.37 Aligned_cols=78 Identities=9% Similarity=0.013 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHH
Q psy16607 534 LYNAELFNNLALCCFYSQQY---DMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR 609 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~ 609 (677)
..+..+.+++|+++.+..+. .+++.+++..+. ..| ...+.++.++..+. ++|+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~y-------------------kl~~Y~ 94 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCY-------------------KLGEYS 94 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHH-------------------TTTCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHH-------------------HhhhHH
Confidence 45667777788777776654 356777777666 445 45566666776666 777777
Q ss_pred HHHHHHHHHHccCCCChHHHHHH
Q psy16607 610 LAIQCLHLALSIDSSHGLSQNNL 632 (677)
Q Consensus 610 ~A~~~~~~al~~~p~~~~~~~~l 632 (677)
+|..+.+.+++..|++..+....
T Consensus 95 ~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 95 MAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHH
Confidence 77777777777777776554443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.74 E-value=0.021 Score=47.24 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH
Q psy16607 355 TDIEAFIRMIRVYIRLDQP---IRAIDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430 (677)
Q Consensus 355 p~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 430 (677)
+...+.+.+|.++.+..+. .+++.+++..++..| ...+.++.+|..+.++|+|++|.++.+.+++..|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4778888888888877654 467778888877777 346778888888888888888888888888888887665443
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.14 Score=58.09 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=26.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
...|++++|.++.+. .++...|..+|..+.+.++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 445666666555432 245566666666666666666666666654
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.46 E-value=1.3 Score=47.80 Aligned_cols=249 Identities=12% Similarity=-0.017 Sum_probs=131.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHH-
Q psy16607 367 YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL- 445 (677)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~- 445 (677)
+.+.+++..-+.++.. .|.+...-..........|+..+|....+++.......+.....+-..+...|......
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~ 157 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY 157 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH
Confidence 3446677766664443 37778877788888888888877777777666554444444444444444434332221
Q ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-----------chHHHHHHHHHHHHHhhhccc
Q psy16607 446 -LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----------NAADVWYNISHVAILNALSTS 513 (677)
Q Consensus 446 -~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~~l~~~~~l~~l~~~ 513 (677)
.-++.++.. .+......++... -... .++.-...++..+|.. .........+....
T Consensus 158 ~~R~~~al~~--~~~~~a~~l~~~l--~~~~-~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rl------- 225 (618)
T 1qsa_A 158 LERIRLAMKA--GNTGLVTVLAGQM--PADY-QTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASV------- 225 (618)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHTC--CGGG-HHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHC--CCHHHHHHHHHhC--CHHH-HHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHH-------
Confidence 111111111 1111111111110 0000 0000000111112211 00111122222222
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607 514 VYNDQPEVALLFYRRLLQMGLYNAEL----FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS 589 (677)
Q Consensus 514 ~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~ 589 (677)
...+.+.|...+........-+... +..++.-+...+...++...+.+... ...++.......+.. .
T Consensus 226 -ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~A-l----- 296 (618)
T 1qsa_A 226 -ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMA-L----- 296 (618)
T ss_dssp -HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHH-H-----
T ss_pred -HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHH-H-----
Confidence 3457888988888776443333322 22233333344446677777777654 333333222222333 3
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
+.|+++.|...|+++-..........+.+|..+...|+.++|..+|+++..
T Consensus 297 --------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 --------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp --------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 679999999999886654445677889999999999999999999999975
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.38 E-value=0.52 Score=47.68 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh----ccc-chHHH
Q psy16607 429 ACIGVNHFYNDQPEVALLFYRRLLQMGL--Y----NAELFNNLALCCFYSQQYDMVVTCFERALSLA----LNE-NAADV 497 (677)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~-~~~~~ 497 (677)
..+|.+|+..|+|.+|.+.+.+..+.-. + -.+++.....+|...+++.++...+.++.... +++ .....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3778888888888888888887776321 1 13566777888999999999999998886653 111 01111
Q ss_pred HHHHHHHHHHhhhcccc-cCCCHHHHHHHHHHHHH
Q psy16607 498 WYNISHVAILNALSTSV-YNDQPEVALLFYRRLLQ 531 (677)
Q Consensus 498 ~~~l~~~~~l~~l~~~~-~~~~~~~A~~~~~~al~ 531 (677)
...-|.. ++ ..++|..|...|-+++.
T Consensus 183 ~~~~Gi~--------~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGIL--------HAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHH--------HHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHH--------HHHhccCHHHHHHHHHHHHh
Confidence 1122222 24 57999999999988874
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.23 E-value=0.2 Score=50.69 Aligned_cols=116 Identities=14% Similarity=0.034 Sum_probs=79.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 541 NNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
..+|..|...|+|.+|...+.+........++ .+++.....+|. ..+++.++...+.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-------------------~~~n~~k~k~~l~ 163 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-------------------ALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-------------------HhccHHHHHHHHH
Confidence 37899999999999999999998875433222 244445555555 9999999999999
Q ss_pred HHHccC---CCCh----HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHhcCC
Q psy16607 617 LALSID---SSHG----LSQNNLAVLEA-REGHIERASTYLQAAAASSPYL-----YETHYNQAVISNLVSV 675 (677)
Q Consensus 617 ~al~~~---p~~~----~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~G~ 675 (677)
++.... +.++ .....-|.++. ..++|.+|..+|-++++-..+- ..+...++.+-...++
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 887543 1223 34455678888 8999999999999987543322 1233445555544443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.032 Score=61.43 Aligned_cols=112 Identities=10% Similarity=0.094 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHc--------CCCc----------HHHHHHHH
Q psy16607 340 IREAQQQFNSALNQFTDIEAFIRMIRVYIRL---DQPIRAIDIGRNALDC--------YPNE----------VTIMTEMA 398 (677)
Q Consensus 340 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la 398 (677)
++.|+..|++..+.+|....++..+.+.... .+--+|+....+.++. .+.+ ...+...+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 4666677777666666444443333332211 1223455555544421 1111 23455556
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607 399 RIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL 451 (677)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (677)
..+...|+++-|+++.++++...|.....|+.|+.+|..+|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 66677778888888888888888877888888888888888888777666544
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.081 Score=58.28 Aligned_cols=126 Identities=9% Similarity=0.000 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHcc--------CC---
Q psy16607 290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYF--SL-GLIREAQQQFNSALNQ--------FT--- 355 (677)
Q Consensus 290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p--- 355 (677)
+...++.++-...+.++.|+.++++.....|..... +..+.+.. .. .+--+|+....+.++. .+
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~--~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIY--YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 344455554333344788999999999888644333 22222222 22 2344577777776642 11
Q ss_pred --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607 356 --------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417 (677)
Q Consensus 356 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 417 (677)
....+...+..+...|+++-|+.+.++++...|.+...|..|+.+|..+|+|+.|+-.+..+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12356667888889999999999999999999999999999999999999999999877665
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.78 E-value=0.43 Score=53.95 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (677)
..+...+...|.+++|+...+. .... .......|++++|.+..+. .++...|..+|..+.+.+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCChHHheecCCC-------cchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCH
Confidence 4555666677777776654421 1111 2234556777777766432 24567777777777777777
Q ss_pred hHHHHHHHHH
Q psy16607 408 PMSVKYYKLI 417 (677)
Q Consensus 408 ~~A~~~~~~a 417 (677)
+.|+++|.++
T Consensus 698 ~~A~~~y~~~ 707 (814)
T 3mkq_A 698 KLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777777765
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.45 Score=41.85 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=57.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607 368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 447 (677)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- +. -.+..+|...|+.+.-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~---~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----SF---DKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CH---HHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CH---HHHHHHHHHhCCHHHHHHH
Confidence 4567777777766554 456677777777777777777777777652 22 2233444455555544444
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 448 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
.+.+..... ++....+++..|+++++++.|.+.
T Consensus 83 a~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 433333221 223344566677777777776543
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.82 E-value=0.3 Score=55.11 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CC
Q psy16607 462 FNNLALCCFYSQQYDMVVTCFERALS-----LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LY 535 (677)
Q Consensus 462 ~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~ 535 (677)
++.+...|++.|+.++|...|..+.+ ..|+ ...|..+...+. +.|+.++|.+.|+++.+.. ..
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glc--------k~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWA--------RQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHH--------hCCCHHHHHHHHHHHHHcCCCC
Confidence 34444444444444444444443321 1222 444444444444 5555555555555554322 23
Q ss_pred cHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhhccchH
Q psy16607 536 NAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAA 573 (677)
Q Consensus 536 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~p~~~ 573 (677)
+...|+.+..++.+.|+. ++|..+|+++.+.+..|+..
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 445555555566666653 55666666666655555443
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.76 E-value=5.6 Score=42.92 Aligned_cols=323 Identities=11% Similarity=-0.035 Sum_probs=180.2
Q ss_pred ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607 302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG 380 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 380 (677)
.+++..-+..+.. ++.+.........+....|+-.+|....+++..... .+.....+...+...|........-
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 5666655554332 244555556777788888888888887777766554 4455555555555555554433222
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHH-------------HHHHHHHhCCChHHHHHH
Q psy16607 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA-------------CIGVNHFYNDQPEVALLF 447 (677)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------------~la~~~~~~g~~~~A~~~ 447 (677)
+--+....++......++... +.-..++.....++..+|....... .++.......+.+.|...
T Consensus 160 R~~~al~~~~~~~a~~l~~~l---~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~ 236 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLM 236 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhC---CHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHH
Confidence 222222222333332232211 1112222222334455665543322 123333444577888888
Q ss_pred HHHHHHcCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHH
Q psy16607 448 YRRLLQMGLYNAELF----NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVAL 523 (677)
Q Consensus 448 ~~~al~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~ 523 (677)
+.........+.... ..++.-+...+...++...+.+......++ .......+. .+ ..|+++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~r~-Al--------r~~d~~~a~ 305 (618)
T 1qsa_A 237 IPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST--SLIERRVRM-AL--------GTGDRRGLN 305 (618)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH--HHHHHHHHH-HH--------HHTCHHHHH
T ss_pred HHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh--HHHHHHHHH-HH--------HCCCHHHHH
Confidence 887765443343322 223333333443556777777765544443 222222233 33 569999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-CC--CCcc------
Q psy16607 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC-SP--FSFS------ 594 (677)
Q Consensus 524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~-~p--~~~~------ 594 (677)
..+..+-......+...+-+|.++...|+.++|..+|+++.. +.. .|-.++........ .+ ....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~~--fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~ 379 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQRIGEEYELKIDKAPQNVDSAL 379 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHHTTCCCCCCCCCCCSCCCCHH
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCC--hHHHHHHHHcCCCCCCCCCCCChhHHhhh
Confidence 999876654445678889999999999999999999999875 222 23233322211110 11 0000
Q ss_pred ----cchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607 595 ----THTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651 (677)
Q Consensus 595 ----~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 651 (677)
.......+...|....|...+...+... +..-...++.+....|.+..++....+
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0111236778899999988888777542 344556778888888998888766543
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.74 E-value=0.27 Score=55.46 Aligned_cols=91 Identities=10% Similarity=-0.084 Sum_probs=75.9
Q ss_pred HHHhcccCHHHHHHHHHHHHhh---CcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcC
Q psy16607 297 YLYHHENDVASAMDLAVESTKA---CEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLD 371 (677)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g 371 (677)
..|++.|+.++|..+|.++.+. ....+...|+.+...+.+.|++++|.++|+++.... |+..+|..+..++.+.|
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G 214 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Confidence 3478889999999999876532 224466777899999999999999999999998854 79999999999999999
Q ss_pred Ch-HHHHHHHHHHHHcC
Q psy16607 372 QP-IRAIDIGRNALDCY 387 (677)
Q Consensus 372 ~~-~~A~~~~~~al~~~ 387 (677)
+. ++|.++++++.+..
T Consensus 215 ~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 215 QDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 85 78889999988764
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.57 E-value=0.58 Score=40.14 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ 613 (677)
Q Consensus 534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~ 613 (677)
|..++.-..++..++-.|.|..++-.+ .+-+...+.+.-..||. +.++|..|+.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L-------~~lNT~Ts~YYk~LCy~-------------------klKdYkkA~~ 83 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHL-------HKLNTCTSKYYESLCYK-------------------KKKDYKKAIK 83 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHH-------HTCCBHHHHHHHHHHHH-------------------HTTCHHHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHH-------HhcchHHHHHHHHHHHH-------------------HHHHHHHHHH
Confidence 344455667788888999998887665 34556677777788888 9999999999
Q ss_pred HHHHHHc--c---------------CCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607 614 CLHLALS--I---------------DSSHGL-SQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 662 (677)
Q Consensus 614 ~~~~al~--~---------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 662 (677)
.++..++ . +|.+.+ .+..+|.++...|+.++|+.+|.......|-.+..
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 9999983 2 233444 45678999999999999999999999988866543
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.98 Score=39.68 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=24.6
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
..|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555555554443 34555666666666666666666665554
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.29 E-value=1.4 Score=41.42 Aligned_cols=118 Identities=10% Similarity=-0.044 Sum_probs=83.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
++.|..++|++.....++.+|.+......+..+++-.|+++.|...++.+.+ .+|+....-..+..+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI---------- 75 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLV---------- 75 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH----------
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHH----------
Confidence 4889999999999999999999999999999999999999999999999999 7887654332221111
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHcc--C---CCChHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALSI--D---SSHGLSQN---NLAVLEAREGHIERASTYLQAAAASSPYL 659 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~--~---p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~ 659 (677)
.|...=.+.+.- . +..+..|. .-+......|+.++|.+.-.++++..|..
T Consensus 76 ----------------~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 76 ----------------KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----------------HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----------------HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 011111222221 1 12233332 33455566799999999999998887754
No 247
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.25 Score=51.43 Aligned_cols=142 Identities=17% Similarity=0.126 Sum_probs=69.4
Q ss_pred cCCCHHHHHHHHHHHH-----------HcCCCcHHHHHHHHHHHHhccCHHHHH----------HHHHHHHHHh---hcc
Q psy16607 515 YNDQPEVALLFYRRLL-----------QMGLYNAELFNNLALCCFYSQQYDMVV----------TCFERALSLA---LNE 570 (677)
Q Consensus 515 ~~~~~~~A~~~~~~al-----------~~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~---~~p 570 (677)
..+++++|..+-...+ .+++-.+.+|+..+.++...|+..+.. ..+-.++..+ .++
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 5677777777665544 123445677888888888877765532 2233333321 122
Q ss_pred -chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-------hHHHHHHHHHHHHcCCH
Q psy16607 571 -NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHI 642 (677)
Q Consensus 571 -~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~ 642 (677)
.....++.+-..|. ..+.+++|..+..++. .|.. ...++.+|.++.-.++|
T Consensus 228 ~~qa~l~nllLRnYL-------------------~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y 286 (523)
T 4b4t_S 228 ETKAMLINLILRDFL-------------------NNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDY 286 (523)
T ss_dssp CHHHHHHHHHHHHHH-------------------HSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHH-------------------ccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccH
Confidence 23456777777777 9999999999999985 3322 34567789999999999
Q ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHhcCCCC
Q psy16607 643 ERASTYLQAAAASSPYLY-------ETHYNQAVISNLVSVIP 677 (677)
Q Consensus 643 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~G~ip 677 (677)
.+|.+++..|+...|.+. .++..+..+...+|.||
T Consensus 287 ~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 287 STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp HHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 999999999999888653 23334555666689998
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.91 E-value=2.8 Score=36.04 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--cC--C-----------
Q psy16607 291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN--QF--T----------- 355 (677)
Q Consensus 291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~--p----------- 355 (677)
.+.+++.+++-.|.+..++-.+.. .+.....+....|+.+..+|..|+..+++.+. .+ |
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHK------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 455667777778999888876644 33555557788899999999999999999883 22 2
Q ss_pred ---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH-----------HHHHHcCC-------hhHHH--
Q psy16607 356 ---D-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA-----------RIFEGLNN-------MPMSV-- 411 (677)
Q Consensus 356 ---~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~~~g~-------~~~A~-- 411 (677)
+ ...+..+|.++.+.|+.++|+.++.......|--+.+-..+- .+. ..|+ +....
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~l 187 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEF 187 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------CHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHH-hhhhccchhhhhhhHHHH
Confidence 1 234567888999999999999999888877764332211100 000 0000 01111
Q ss_pred ------HHHHHHHHhCcCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607 412 ------KYYKLILKRDATCMEA-IACIGVNHFYNDQPEVALLFYRRLLQMGLY 457 (677)
Q Consensus 412 ------~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (677)
...++-...-|.-... ....+.-|+..|-.++...+|...-+.+|.
T Consensus 188 He~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 188 HESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 1111222222332222 234577889999999999999999888875
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.60 E-value=0.87 Score=46.32 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
+...++..+...|++.+++..+..++..+|.+..++..+..++...|+..+|+..|+++-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666666666666666666666666666543
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.34 E-value=0.38 Score=50.41 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
.+..+|.+.. ....++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++.
T Consensus 154 ~l~~LGDL~R-------------------Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIAR-------------------YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHH-------------------HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4566788776 778899999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHh
Q psy16607 655 SSPYLYETHYNQAVISNL 672 (677)
Q Consensus 655 ~~p~~~~~~~~la~~~~~ 672 (677)
.....+.+..|+..++..
T Consensus 215 ~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHH
Confidence 888889999999887754
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.32 E-value=5.8 Score=44.67 Aligned_cols=23 Identities=4% Similarity=-0.086 Sum_probs=18.7
Q ss_pred HHHHhhhhcChHHHHHHHHHHhh
Q psy16607 122 YAVDHFHKRNFEKCAAICTELLA 144 (677)
Q Consensus 122 ~a~~~~~~~~~~~a~~~~~~~l~ 144 (677)
...++.+.++.+.+.++|.+++.
T Consensus 236 a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 236 LNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44778888899999999998874
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.94 E-value=1.3 Score=44.96 Aligned_cols=93 Identities=13% Similarity=-0.056 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNE----------------------VTIMTEMARIFEGLNNMPMSVKYYKLIL 418 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 418 (677)
...+......|+...|...+++++.+.... ..+...++..+...|++.+++..+.+++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444456789999999999999875221 0134456777889999999999999999
Q ss_pred HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607 419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453 (677)
Q Consensus 419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (677)
..+|-+..++..+..++...|+..+|++.|+++..
T Consensus 199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.88 E-value=6.6 Score=46.20 Aligned_cols=123 Identities=11% Similarity=-0.010 Sum_probs=86.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-c------------------
Q psy16607 430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-L------------------ 490 (677)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p------------------ 490 (677)
.+...+...+.++-+.+ .+...+.++...+.+|.++...|++++|..+|+++-.-- .
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44555666677765544 345567778788999999999999999999998873210 0
Q ss_pred --ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC-cH----HHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607 491 --NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY-NA----ELFNNLALCCFYSQQYDMVVTCFERA 563 (677)
Q Consensus 491 --~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a 563 (677)
.......+..+..++. +.+.++.+++..+.+++..+. +. ..|.++-..+...|+|++|...+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe--------~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLF--------EESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHH--------HTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 0012334555555665 788999999999999976543 32 26778888899999999998887654
Q ss_pred H
Q psy16607 564 L 564 (677)
Q Consensus 564 l 564 (677)
-
T Consensus 965 p 965 (1139)
T 4fhn_B 965 S 965 (1139)
T ss_dssp H
T ss_pred C
Confidence 3
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.84 E-value=1.8 Score=50.96 Aligned_cols=120 Identities=8% Similarity=-0.027 Sum_probs=89.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh---------------------
Q psy16607 362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------------------- 420 (677)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------- 420 (677)
.+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44555666677766544 34456777777889999999999999999999876211
Q ss_pred --CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607 421 --DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-YNA----ELFNNLALCCFYSQQYDMVVTCFERA 485 (677)
Q Consensus 421 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 485 (677)
.......|..+..++.+.+.++.+++..+.+++..+ ++. ..|.++-..+...|+|++|...+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 011245677888899999999999999999998654 333 26777888899999999998877544
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.83 E-value=9.8 Score=39.27 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=119.3
Q ss_pred ccCHHHHHHHHHHHHhhCc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHH---HHH-HcC
Q psy16607 302 ENDVASAMDLAVESTKACE-----FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIR---VYI-RLD 371 (677)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~---~~~-~~g 371 (677)
.|+++.|++.+....+... .........+...+...|+++.....+.-..+... ...+...+.. -+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3778888887765554321 23344456677888899999988777765554433 2222222211 111 122
Q ss_pred ChHHHHHHHHHHHHcC----CC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc--C----CHHHHHHHHHH
Q psy16607 372 QPIRAIDIGRNALDCY----PN-------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA--T----CMEAIACIGVN 434 (677)
Q Consensus 372 ~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~ 434 (677)
..+.. .....+..- .. .......++.++...|++.+|...+.....-.- . -.+.+.....+
T Consensus 109 ~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22211 111222211 10 234567899999999999999999988754211 1 25677888999
Q ss_pred HHhCCChHHHHHHHHHHHH---cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607 435 HFYNDQPEVALLFYRRLLQ---MGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLA 489 (677)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~---~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 489 (677)
+...+++.+|...+.++.. ..+..+ ..+...|.++...++|.+|..+|..++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 9999999999999998743 233333 356678999999999999999999988653
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=10 Score=39.19 Aligned_cols=184 Identities=5% Similarity=-0.056 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHccC------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH---HH-HcCC
Q psy16607 338 GLIREAQQQFNSALNQF------T-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI---FE-GLNN 406 (677)
Q Consensus 338 g~~~~A~~~~~~al~~~------p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~-~~g~ 406 (677)
|++++|++.+....+.. + ...+...+..++...++++...+.+.-..+.......+...+... +. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 56778887765544321 1 578888899999999999998887766555444333332222221 11 1222
Q ss_pred hhHHHHHHHHHHHhC----c-------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC----HHHHHHHHHHH
Q psy16607 407 MPMSVKYYKLILKRD----A-------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCC 469 (677)
Q Consensus 407 ~~~A~~~~~~al~~~----p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~----~~~~~~la~~~ 469 (677)
.+.. .....+..- . ........|+.++...|++.+|..++.....- ...+ .+.+.....+|
T Consensus 110 ~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2211 111222211 1 12445678999999999999999999987642 1111 46778889999
Q ss_pred HHcCCHHHHHHHHHHHHhh-h--ccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH
Q psy16607 470 FYSQQYDMVVTCFERALSL-A--LNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ 531 (677)
Q Consensus 470 ~~~g~~~~A~~~~~~al~~-~--p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~ 531 (677)
...+++..|...+.++... . +.+ .....+...|.++. ..++|.+|..+|..++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~--------~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISL--------HKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHh
Confidence 9999999999999987431 1 111 12334455566666 78999999999888874
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.53 E-value=5 Score=37.72 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
.+.+.|+.++|++.....++..|.+......+..+++-.|+++.|.+-++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45677888889999988899999999888888899999999999999999888888885
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.95 E-value=0.74 Score=48.23 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607 395 TEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469 (677)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 469 (677)
..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344444444444445555555555555555555555555554444444444444444444433444444444433
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.17 E-value=23 Score=39.89 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-------cc-chH
Q psy16607 429 ACIGVNHFYNDQPEVALLFYRRLLQMG-LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLAL-------NE-NAA 495 (677)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~-~~~ 495 (677)
..+|.+ ..|+.++++..+.+.+... ..+ ..+.+.+|.++...+ ++++..+...+.... .. ...
T Consensus 380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence 344444 4577778888887766522 222 235566666665555 468888888776543 11 112
Q ss_pred HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA--ELFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.+...+|.++. -.+ -+++.+.+...+..+.... .+-..+|.++.-.|+-+-...++..+.+
T Consensus 456 gAaLGLGla~~--------GS~-~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 456 GASLGIGLAAM--------GSA-NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHST--------TCC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------CCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 34445555543 333 3577788887776443222 3455677888888887666666666554
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.21 E-value=1.3 Score=45.98 Aligned_cols=62 Identities=5% Similarity=-0.038 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATC-------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (677)
++..+-..|...+.++.|..+..++. .|.. ...++.+|.++...++|.+|.+++..++...|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34444445555555555555555442 1211 23344445555555555555555555554443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.20 E-value=1.4 Score=45.48 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~ 615 (677)
..++..+|..|.+.|++++|.++|.++......+ ...+.+.....++. ..+++..+...+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-------------------~~~d~~~~~~~~ 191 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-------------------FYNDQLYVKEKL 191 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-------------------HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-------------------HhccHHHHHHHH
Confidence 3577889999999999999999999998755444 34577777777777 899999999999
Q ss_pred HHHHccC--CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607 616 HLALSID--SSHGL----SQNNLAVLEAREGHIERASTYLQAAAASSPY 658 (677)
Q Consensus 616 ~~al~~~--p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 658 (677)
+++.... ..++. .....|.++...++|.+|...|-.++.....
T Consensus 192 ~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 192 EAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 9986542 22333 2334566777889999999999988776543
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.73 E-value=2.2 Score=44.02 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (677)
..+|..|...|++++|.+.|.++..... ..+.+..+.+++...+++..+...+.++...
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5788888888999999988888876432 4577777777777888888888777776543
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.75 E-value=73 Score=31.02 Aligned_cols=26 Identities=15% Similarity=-0.067 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607 423 TCMEAIACIGVNHFYNDQPEVALLFY 448 (677)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~ 448 (677)
.+++.+..+|..|...+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 36777777888888887777777666
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.31 E-value=75 Score=30.95 Aligned_cols=82 Identities=13% Similarity=0.038 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535 (677)
Q Consensus 456 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~ 535 (677)
-.+++.+..+|..|++.+++.+|..+|- +..++. +..+..+-.-+. . +..|.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s---~~~~a~mL~ew~--------~---------------~~~~~ 184 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKES---PEVLARMEYEWY--------K---------------QDESH 184 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTH---HHHHHHHHHHHH--------H---------------TSCGG
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCch---HHHHHHHHHHHH--------H---------------hcCCc
Confidence 4689999999999999999999998883 222211 233322222222 1 12244
Q ss_pred cHHHHHHHH-HHHHhccCHHHHHHHHHHHHH
Q psy16607 536 NAELFNNLA-LCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 536 ~~~~~~~la-~~~~~~g~~~~A~~~~~~al~ 565 (677)
....+...+ ..|...++...|...+....+
T Consensus 185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555544 346778888888887766554
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=71.37 E-value=0.0004 Score=70.56 Aligned_cols=226 Identities=9% Similarity=0.041 Sum_probs=137.3
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChH
Q psy16607 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPI 374 (677)
Q Consensus 295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~ 374 (677)
+|..++..+...+|++.|-++- +|.. +.....+..+.|.+++-+.++.-+.+....+.+-..+..+|.+.++..
T Consensus 60 LgkAqL~~~~v~eAIdsyIkA~--Dps~----y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSYIKAD--DPSS----YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp HHHHTTTSSSCTTTTTSSCCCS--CCCS----SSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHccCchHHHHHHHHhCC--ChHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 3444555677777777665543 2111 123445556778888888888777665444444455666777777655
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454 (677)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 454 (677)
+-.+.+ ..|+ ..-....|.-++..|.|+.|.-+|..+ .-|..|+.++..+|+|+.|++..+++
T Consensus 134 elEefl-----~~~N-~A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA--- 196 (624)
T 3lvg_A 134 ELEEFI-----NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA--- 196 (624)
T ss_dssp TTTSTT-----SCCS-SSCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC---
T ss_pred HHHHHH-----cCCC-cccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 433222 1232 222345677777888888777666542 12345677788888888887766553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534 (677)
Q Consensus 455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p 534 (677)
+++..|......+...+++.-|..+--..+-. ++. +-.+...| -..|.+++-+..++..+.+..
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade-----L~elv~~Y--------E~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE-----LEELINYY--------QDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC-----CSGGGSSS--------STTCCCTTSTTTHHHHTTSTT
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH-----HHHHHHHH--------HhCCCHHHHHHHHHHHhCCCc
Confidence 45667777777777777777776665554432 221 11112222 367888888888888887777
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607 535 YNAELFNNLALCCFYSQQYDMVVTCF 560 (677)
Q Consensus 535 ~~~~~~~~la~~~~~~g~~~~A~~~~ 560 (677)
-+...+..||.+|.+- +.++-.+.+
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 7888888888877653 333333333
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.97 E-value=2.1e-05 Score=79.69 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=114.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (677)
..+|.++...++..+|+..|-++- ++..+.....+..+.|++++-+.+++-+.+. -.++.+-..+..+|.+.++.
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRL 132 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSS
T ss_pred HHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcH
Confidence 567777777777777776665431 2233344445555666666666666655443 22334444555666666655
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607 408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 487 (677)
Q Consensus 408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 487 (677)
.+-.+++. .|+. .-....|.-++..|.|+.|.-+|..+ .-|..++.++..+|+|..|++.-++|-
T Consensus 133 ~elEefl~-----~~N~-A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKAn- 197 (624)
T 3lvg_A 133 AELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN- 197 (624)
T ss_dssp STTTSTTS-----CCSS-SCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTCC-
T ss_pred HHHHHHHc-----CCCc-ccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44322221 1221 12234566666666666665444321 113345566666666666666554441
Q ss_pred hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567 (677)
Q Consensus 488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 567 (677)
+ ..+|-....+.. ..+++.-|..+--..+-. ++. +-.+...|...|.|++-+.+++.++.
T Consensus 198 ----s--~ktWKeV~~ACv--------d~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglg-- 257 (624)
T 3lvg_A 198 ----S--TRTWKEVCFACV--------DGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALG-- 257 (624)
T ss_dssp ----S--SCSHHHHTHHHH--------HSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTT--
T ss_pred ----C--hhHHHHHHHHHh--------CchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhC--
Confidence 1 344555555554 555555554444333311 111 11234456666777777777777765
Q ss_pred hccchHHHHHHHHHHHH
Q psy16607 568 LNENAADVWYNISHVAI 584 (677)
Q Consensus 568 ~~p~~~~~~~~l~~~~~ 584 (677)
...-+...+..||.+|.
T Consensus 258 lErAHmGmFTELaILYs 274 (624)
T 3lvg_A 258 LERAHMGMFTELAILYS 274 (624)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHH
Confidence 55566666667776663
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.38 E-value=33 Score=30.59 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHc--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607 605 ISDTRLAIQCLHLALS--IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657 (677)
Q Consensus 605 ~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 657 (677)
.+...++...|.-+.. +.-..+..|...|..+...|++.+|.++|+..++..-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4556677777777665 3445667777888888888888888888888888653
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.11 E-value=56 Score=27.12 Aligned_cols=54 Identities=15% Similarity=-0.048 Sum_probs=45.3
Q ss_pred hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607 603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656 (677)
Q Consensus 603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 656 (677)
...|+-++-.+.+...+.-.+-+++.+..+|.+|.+.|+..+|-+++.+|-+..
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 388888888888888777677779999999999999999999999999997754
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.04 E-value=51 Score=37.66 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=35.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607 363 MIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLIL 418 (677)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 418 (677)
+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555666665443 3456667777777788888888888888888887753
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.50 E-value=40 Score=30.04 Aligned_cols=68 Identities=6% Similarity=0.046 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570 (677)
Q Consensus 494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p 570 (677)
+..+|...+... ..+...++...|.-+.. +....+..|...|..+...|++.+|...|+.+++....|
T Consensus 79 YLklWl~Ya~~~---------~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 79 FLKIWIWYINLF---------LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHhh---------cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355666666553 24557788888888774 556778889999999999999999999999999843334
No 271
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.56 E-value=17 Score=37.28 Aligned_cols=77 Identities=8% Similarity=-0.085 Sum_probs=55.5
Q ss_pred HHhcCCCHHHHHHHHHHHHccCC--C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCh---------
Q psy16607 601 FIQGISDTRLAIQCLHLALSIDS--S--------HGLSQNNLAVLEAREGHIERASTYLQAAAAS-SPYLY--------- 660 (677)
Q Consensus 601 ~l~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~--------- 660 (677)
+|++.++..-+...++..-...+ . -...++.+|.++...++|.+|.+.+..|+.. .|...
T Consensus 185 iYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~ 264 (455)
T 3t5v_B 185 IYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNG 264 (455)
T ss_dssp HHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHH
Confidence 55599999888888765433221 1 1346788999999999999999999999998 77651
Q ss_pred -HHHHHHHHHHHhcCCCC
Q psy16607 661 -ETHYNQAVISNLVSVIP 677 (677)
Q Consensus 661 -~~~~~la~~~~~~G~ip 677 (677)
..+..+--+...+|.+|
T Consensus 265 ~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 265 TRILNYMIPTGLILGKMV 282 (455)
T ss_dssp HHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 12333445556678887
No 272
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=61.07 E-value=16 Score=32.85 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----HHHHHHHHHhcCCCC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET-----HYNQAVISNLVSVIP 677 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~~G~ip 677 (677)
...+.+|.++...++|.+|.+.+..|+...|..... +..|--+...+|.+|
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456788999999999999999999999988876432 233333445567766
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.93 E-value=44 Score=38.25 Aligned_cols=48 Identities=13% Similarity=-0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH----HHHHHHHHHHhcC
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYE----THYNQAVISNLVS 674 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~----~~~~la~~~~~~G 674 (677)
..|.+...++...+-++-++...+.|++.- ++++. .|..+=.....+|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 366788889999999999999999999754 45543 4444444444443
No 274
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=56.27 E-value=11 Score=41.08 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcc
Q psy16607 122 YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDL 169 (677)
Q Consensus 122 ~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~ 169 (677)
.|...+..|+|.-|.++++.++..+|++++|..+++.+|.+.+|..+.
T Consensus 455 ~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 455 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 678889999999999999999999999999999999999999888773
No 275
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=60.05 E-value=2.5 Score=46.06 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=46.3
Q ss_pred cChHH-HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhc
Q psy16607 117 VDSMF-YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD 168 (677)
Q Consensus 117 ~~~~~-~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~ 168 (677)
.++.+ .|..++..|+|.-|.++++.++..+|++++|..+++.+|.+.+|..+
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 34444 67888999999999999999999999999999999999999987765
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=54.54 E-value=18 Score=27.01 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=14.0
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
+.|++++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 88888888888887765
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.25 E-value=2.4e+02 Score=30.47 Aligned_cols=21 Identities=5% Similarity=-0.037 Sum_probs=17.0
Q ss_pred HHHHhhhhcChHHHHHHHHHH
Q psy16607 122 YAVDHFHKRNFEKCAAICTEL 142 (677)
Q Consensus 122 ~a~~~~~~~~~~~a~~~~~~~ 142 (677)
.-.-++|.|.+++|+++..+.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHh
Confidence 556678999999999988744
No 278
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=53.73 E-value=1e+02 Score=29.64 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=27.2
Q ss_pred chHHHHHHHHhhhchhHHHHHHHHHhhhCc
Q psy16607 13 DSMFYAVDHFHKRNFEKCAAICTELLAKNP 42 (677)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (677)
+-+-.|+.+|..|+|++|+++|..||..=|
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999998765
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=53.01 E-value=20 Score=26.81 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
+.|++++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 88888888888887765
No 280
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=52.73 E-value=10 Score=41.44 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhcccccccc
Q psy16607 15 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD 63 (677)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (677)
+.+|-..+..|+|.-|+++++.++.-||+|++|=.+|+.++.+.+|-.|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4567788999999999999999999999999999999999998888765
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.71 E-value=1.1e+02 Score=25.85 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607 554 DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623 (677)
Q Consensus 554 ~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p 623 (677)
+++...|..+....+....+..|...+..+. ..|++.+|.+.|+..++...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE-------------------~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLE-------------------AQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHcCC
Confidence 4478888888775566677778888888887 99999999999999988653
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.85 E-value=1.8e+02 Score=28.01 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607 457 YNAELFNNLALCCFYSQQYDMVVTCFE 483 (677)
Q Consensus 457 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 483 (677)
.++..+..+|..|.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578999999999999999999988875
No 283
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=48.04 E-value=1.2e+02 Score=25.23 Aligned_cols=123 Identities=9% Similarity=-0.066 Sum_probs=82.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH------------------HHHHHH--HHcCChhHHHHHHHHHHHhCcC
Q psy16607 364 IRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT------------------EMARIF--EGLNNMPMSVKYYKLILKRDAT 423 (677)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------~la~~~--~~~g~~~~A~~~~~~al~~~p~ 423 (677)
|.-..-.|..++.++...+.....+-...-|+ .+|.++ ...|+...-+.+|-+.- .
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n---~- 89 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN---T- 89 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT---C-
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc---c-
Confidence 45556679999999999998877654322222 112111 13455666666655431 1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607 424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490 (677)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 490 (677)
+.+..-.--..+...|+-++--+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|.+..-
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2222222234566778888888888887777778899999999999999999999999999987643
No 284
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=47.41 E-value=1.8e+02 Score=27.04 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHc-----cCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALS-----IDSSHGL---SQNNLAVLEA-REGHIERASTYLQAAAA 654 (677)
Q Consensus 609 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 654 (677)
+.|...|+.|.+ +.|.+|- ...+.+..|+ -+++.++|....+++++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666653 5677763 2334444444 47999999888777765
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.75 E-value=49 Score=28.39 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH 616 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~ 616 (677)
..+|...+... +++..+|..+....+....+..|...+..+. ..|++.+|.+.|+
T Consensus 66 LklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE-------------------~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 66 LNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYE-------------------ARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHH-------------------HcCCHHHHHHHHH
Confidence 45666666553 4477788888876666778888888888888 9999999999999
Q ss_pred HHHccCC
Q psy16607 617 LALSIDS 623 (677)
Q Consensus 617 ~al~~~p 623 (677)
..++...
T Consensus 121 ~Gi~~~A 127 (164)
T 2wvi_A 121 EGIQQKA 127 (164)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9998653
No 286
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=45.20 E-value=49 Score=31.89 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=26.4
Q ss_pred chHHHHHHHHhhhchhHHHHHHHHHhhhCc
Q psy16607 13 DSMFYAVDHFHKRNFEKCAAICTELLAKNP 42 (677)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (677)
+-+-.|+.+|..|+|++|++.|..||..=|
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 347889999999999999999999998744
No 287
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.35 E-value=57 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663 (677)
Q Consensus 630 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 663 (677)
..+|..+...|++++|..+|-+|+...|.-.+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4688889999999999999999999998876544
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.81 E-value=1.4e+02 Score=25.64 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 444 ALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 444 A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
+..+|..+.. +....+..|...|..+...|++.+|.++|+..++....+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555554 445566777777788888888888888888887766554
No 289
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=42.93 E-value=2.1e+02 Score=26.59 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHc----cCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALS----IDSSHGL---SQNNLAVLEA-REGHIERASTYLQAAAA 654 (677)
Q Consensus 609 ~~A~~~~~~al~----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 654 (677)
+.|...|+.|++ +.|.+|- ...+.+..|+ -+++.++|....++++.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667776664 5566652 2333444444 47999999988888776
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.59 E-value=3.4e+02 Score=29.27 Aligned_cols=76 Identities=18% Similarity=0.031 Sum_probs=32.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHH---H---HH
Q psy16607 296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRV---Y---IR 369 (677)
Q Consensus 296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~---~---~~ 369 (677)
-.++.-.|+|+.|+.++-+. . .... ..+|.++...|-... =...+...+. ....+++.+ | ++
T Consensus 301 f~vLlLtgqFE~AI~~L~~~---~--~vdA--VH~AIaL~~~gLL~~----~~~lls~~~~-~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF---S--EMDA--VHLAIGLASLKLFKI----DSSTRLTKKP-KRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT---C--HHHH--HHHHHHHHHTTC----------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc---C--chhH--HHHHHHHHHcCCccC----CCcccccCCC-cccccHHHHHHHHHHHhh
Confidence 33444578888888877654 1 1222 345555555555543 1122222111 111112221 2 34
Q ss_pred cCChHHHHHHHHHH
Q psy16607 370 LDQPIRAIDIGRNA 383 (677)
Q Consensus 370 ~g~~~~A~~~~~~a 383 (677)
..+..+|+++|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777888777655
No 291
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=41.02 E-value=62 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 463 NNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
..+|..+...|++++|+.+|-+|+...|..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 345677777777777777777777776665
No 292
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=40.69 E-value=2.2e+02 Score=26.21 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHc-----cCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALS-----IDSSHGL---SQNNLAVLEA-REGHIERASTYLQAAAA 654 (677)
Q Consensus 609 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 654 (677)
+.|...|+.|.. +.|.+|- ...+.+..|+ -+++.++|....++++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666543 5666663 2233344444 47899988888777765
No 293
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.40 E-value=36 Score=26.02 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=12.9
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|+|++|+.+|..+++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77888888777777665
No 294
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=39.61 E-value=2.2e+02 Score=25.95 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHc-----cCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALS-----IDSSHGL---SQNNLAVLEA-REGHIERASTYLQAAAA 654 (677)
Q Consensus 609 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 654 (677)
+.|...|+.|++ +.|.+|- ...+.+..|+ -+|+.++|....++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666653 5676663 2233444444 47999999888887775
No 295
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.11 E-value=54 Score=24.80 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607 627 LSQNNLAVLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 627 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 654 (677)
-.+..++..+.+.|+|++|+++.+++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455677788888888888887777653
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.88 E-value=55 Score=24.79 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607 539 LFNNLALCCFYSQQYDMVVTCFERALS 565 (677)
Q Consensus 539 ~~~~la~~~~~~g~~~~A~~~~~~al~ 565 (677)
.+...+..+.+.|+|++||++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445678888999999999999888875
No 297
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.54 E-value=46 Score=24.85 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=14.0
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 78888888888888776
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.98 E-value=50 Score=29.93 Aligned_cols=73 Identities=7% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHH---------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607 523 LLFYRRLL---------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593 (677)
Q Consensus 523 ~~~~~~al---------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~ 593 (677)
...+++++ +.+|....+|...+... +++..+|..+....+....+..|...+..+.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE--------- 161 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFE--------- 161 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHH---------
Q ss_pred ccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607 594 STHTSYLFIQGISDTRLAIQCLHLALS 620 (677)
Q Consensus 594 ~~~~~~~~l~~~g~~~~A~~~~~~al~ 620 (677)
..|++.+|...|+..++
T Consensus 162 ----------~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 162 ----------SRGLFQKADEVYQKGKR 178 (223)
T ss_dssp ----------HTTCHHHHHHHHHHHHH
T ss_pred ----------HcCCHHHHHHHHHHHHH
No 299
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=35.68 E-value=1.1e+02 Score=22.96 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHH-HHHHHHH
Q psy16607 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW-YNISHVA 583 (677)
Q Consensus 537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~-~~l~~~~ 583 (677)
......-|.-+++.++|.+|..+|+++.....+|....+. +.++.|-
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 4455666778889999999999999998754555444444 5566553
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.30 E-value=41 Score=27.06 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=12.4
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|+|++|+.+|..+++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66777777777777665
No 301
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=34.11 E-value=75 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=19.9
Q ss_pred CCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607 590 PFSFSTHTSYLFIQGISDTRLAIQCLHLA 618 (677)
Q Consensus 590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~a 618 (677)
+...+.+..+|++.-.|++++|+..-+..
T Consensus 71 lkSde~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 71 LKTDEQYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp TTSCHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCchHHHHHHHHhc
Confidence 34445556667777888899988876654
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.89 E-value=53 Score=24.68 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.3
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy16607 604 GISDTRLAIQCLHLALS 620 (677)
Q Consensus 604 ~~g~~~~A~~~~~~al~ 620 (677)
..|++++|+.+|..+++
T Consensus 28 ~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 28 SESRYPQALVCYQEGID 44 (86)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88889888888888775
No 303
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.25 E-value=2.8e+02 Score=25.28 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHc-----cCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q psy16607 609 RLAIQCLHLALS-----IDSSHGL---SQNNLAVLE-AREGHIERASTYLQAAAA 654 (677)
Q Consensus 609 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 654 (677)
+.|...|+.|.+ +.|.+|- ...+.+..| .-+++.++|....+++++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777654 5677763 223344444 457999999988777764
No 304
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=39.38 E-value=9 Score=41.71 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhcccccccc
Q psy16607 15 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD 63 (677)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (677)
+-+|-..|..|+|.-|+++++.++.-||.|++|=.+|+.++.+.+|-.|
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 3457778999999999999999999999999999999999998888765
No 305
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.70 E-value=1.2e+02 Score=30.96 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC--------CC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-CcCC
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALDCY--------PN--EVTIMTEMARIFEGLNNMPMSVKYYKLILKR-DATC 424 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~--------p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 424 (677)
..+-.+|.+.++..-+...++..-... |. ....++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345567778888877777776543322 21 2345678888888888888888888888887 6543
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.14 E-value=1.9e+02 Score=24.61 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHH-----H-HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AEL-----F-NNLALCCFYSQQYDMVVTCFERALSL 488 (677)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~-----~-~~la~~~~~~g~~~~A~~~~~~al~~ 488 (677)
+.-+..++..|+|-+|-+.++.+....+.. ... . ...|..+.+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555666688888888888777765443 122 2 23344567789999999999998764
No 307
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.73 E-value=66 Score=24.66 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQFTD 356 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 356 (677)
..+|..+...|+++.|+.+|-+++...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35666677777777777777776665543
No 308
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.24 E-value=92 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607 463 NNLALCCFYSQQYDMVVTCFERALSLALNE 492 (677)
Q Consensus 463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 492 (677)
..+|..+...|+++.|+.+|-+|+...|..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 356788888888888888888888877764
No 309
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.77 E-value=79 Score=24.16 Aligned_cols=43 Identities=2% Similarity=-0.074 Sum_probs=33.8
Q ss_pred chHHHHHHHHhhhchhHHHHHHHHHhhhCccc-hhhHHHHhhhh
Q psy16607 13 DSMFYAVDHFHKRNFEKCAAICTELLAKNPYD-KAAWTLKMRSL 55 (677)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 55 (677)
+.|..|..+|+.|+|=+|=++++++-...|++ ...|+=-.+..
T Consensus 3 ~~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~A 46 (94)
T 2cwy_A 3 PDWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLA 46 (94)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 35889999999999999999999999988764 44555444444
No 310
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.20 E-value=83 Score=23.37 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy16607 634 VLEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~al~ 654 (677)
.-.-+.|++++|+.+|..+++
T Consensus 27 ve~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334567787777777777665
No 311
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=25.69 E-value=2.2e+02 Score=21.61 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy16607 329 QLGKCYFSLGLIREAQQQFNSALNQFT 355 (677)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~p 355 (677)
..|..++..|+|-+|-+.++..-...+
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345556666666666666666665444
No 312
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.44 E-value=4.5e+02 Score=25.12 Aligned_cols=27 Identities=15% Similarity=-0.044 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607 423 TCMEAIACIGVNHFYNDQPEVALLFYR 449 (677)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (677)
.++..+..+|..|...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478889999999999999988887775
No 313
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.35 E-value=94 Score=23.06 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=13.4
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q psy16607 635 LEAREGHIERASTYLQAAAA 654 (677)
Q Consensus 635 ~~~~~g~~~~A~~~~~~al~ 654 (677)
-.-+.|++++|+.+|..+++
T Consensus 20 e~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 20 KADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 34567777777777776665
No 314
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.28 E-value=1.4e+02 Score=26.62 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDAT 423 (677)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 423 (677)
..+.+|.++...++|.+|.+.+..|+...|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3445555555555555555555555555443
No 315
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.63 E-value=5e+02 Score=24.96 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=18.7
Q ss_pred HHHHhhhhcChHHHHHHHHHHh
Q psy16607 122 YAVDHFHKRNFEKCAAICTELL 143 (677)
Q Consensus 122 ~a~~~~~~~~~~~a~~~~~~~l 143 (677)
+|..+...|.||.|...+.+=+
T Consensus 34 laadhvAAGsFetAm~lLnrQv 55 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQV 55 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHh
Confidence 6889999999999999988443
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.41 E-value=3.4e+02 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy16607 328 VQLGKCYFSLGLIREAQQQFNSALNQF 354 (677)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (677)
+..+..++..|+|-+|-+.++.+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 455666677777777777777766543
No 317
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=22.83 E-value=38 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=26.8
Q ss_pred chHHHHHHHHhhhchhHHHHHHHHHhh----------hCccchhhHHHHhhhh
Q psy16607 13 DSMFYAVDHFHKRNFEKCAAICTELLA----------KNPYDKAAWTLKMRSL 55 (677)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 55 (677)
..+-+|+..=..|+|++|+..|.+.++ .||.....+..|+.-.
T Consensus 20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 20 DLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 344555555567889888888887765 3444455555555444
No 318
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.96 E-value=92 Score=22.87 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607 395 TEMARIFEGLNNMPMSVKYYKLILK 419 (677)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~~~~al~ 419 (677)
..+|+-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3456666666777777776666654
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.34 E-value=90 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy16607 361 IRMIRVYIRLDQPIRAIDIGRNALD 385 (677)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~ 385 (677)
..+|+-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3455555566666666666665544
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.13 E-value=3.5e+02 Score=24.22 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHccCC-CH------H--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607 340 IREAQQQFNSALNQFT-DI------E--AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403 (677)
Q Consensus 340 ~~~A~~~~~~al~~~p-~~------~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (677)
.+.|+..++.+-+..+ .. . +-.....++.+.|.|++|.+.+++....++.+......|..+-.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 4566666666555443 10 0 112233445566666666666666666555444444444444333
Done!