RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16607
(677 letters)
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 104 bits (262), Expect = 3e-24
Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 32/341 (9%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
L +F + + A+ Q EA+ + VY Q AI+ R+AL P
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
+ + +A +M +V+ Y L+ + + +G + E A Y
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
+ ++ A ++NL + + + FE+A+ L+ N D + N+ +L
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLG--NVLK 214
Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
+ A+ Y R L + +A + NLA + D+ + + RA+ L
Sbjct: 215 EA------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--EL 266
Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
+ D + N+++ L +G A C + AL + +H S
Sbjct: 267 QPHFPDAYCNLANA-----------------LKEKG--SVAEAEDCYNTALRLCPTHADS 307
Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
NNLA ++ +G+IE A + A P H N A +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Score = 101 bits (253), Expect = 4e-23
Identities = 53/343 (15%), Positives = 118/343 (34%), Gaps = 32/343 (9%)
Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
++L + G A++ Q + + + ++ + + R+ A+
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446
P + + +++ + ++++Y+ L+ ++ + E A+
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
Y LQ + ++L + + C+ +A + N A W N+ +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA--IETQPNFAVAWSNLG--CV 178
Query: 507 LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
NA + +A+ + + + + + + NL ++ +D V + RA L
Sbjct: 179 FNAQ------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA--L 230
Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
+L+ N A V N++ V + QG LAI A+ +
Sbjct: 231 SLSPNHAVVHGNLACV-----------------YYEQG--LIDLAIDTYRRAIELQPHFP 271
Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ NLA +G + A A P ++ N A I
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Score = 59.9 bits (146), Expect = 1e-09
Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 22/223 (9%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
+ +LG + AQ + A++ F ++A+I + V RA+ AL
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
PN + +A ++ + +++ Y+ ++ +A + A
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
Y L++ +A+ NNLA + V + +A L + A N++
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLA--- 346
Query: 506 ILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALC 546
SV Q + AL+ Y+ +++ A+ ++N+
Sbjct: 347 -------SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 104 bits (262), Expect = 1e-23
Identities = 73/516 (14%), Positives = 143/516 (27%), Gaps = 102/516 (19%)
Query: 208 SRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLS 267
+ + P ++ + S + T L + +
Sbjct: 17 GNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANN-------TSTDGSF 69
Query: 268 QPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAM-DLAVESTKACEFRDWWW 326
+ L+ Y R + + L + A+ + + ++ T D +W
Sbjct: 70 LKERNAQNTDSLSREDYLR-----LWRHDALMQQQYKCAAFVGEKVLDITG--NPNDAFW 122
Query: 327 KVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDI------- 379
L + Y G A+ ++L A+++
Sbjct: 123 ---LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179
Query: 380 ---GRNALDCYPNEVTIMTE------MARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430
+NA + I E +++ L+N + + YK L DA C EA
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Query: 431 IGVNHFYNDQPEVALL--------------FYRRLLQMGLY------------------- 457
+ NH E L+ F R L + L
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 458 ----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513
+++L A F ++ V+ + L ++ DV+ H+A L+
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPL--HLASLHES--- 352
Query: 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
+ L L+ A + + + + F ++ + ++
Sbjct: 353 ---GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFG 407
Query: 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633
W +H I+G D AI A + L L
Sbjct: 408 PAWIGFAHS-----------------FAIEGEHD--QAISAYTTAARLFQGTHLPYLFLG 448
Query: 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ + G+I A+ YLQ++ A Y V+
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484
Score = 94.5 bits (235), Expect = 2e-20
Identities = 48/370 (12%), Positives = 106/370 (28%), Gaps = 35/370 (9%)
Query: 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAF 360
E D+ ++ + S + F + ++L K +R A+ +S +
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK-TSHEDELRRAEDYLSSINGLEKSSDLL 308
Query: 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR 420
+ + I + I L+ P + + ++ R
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368
Query: 421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 480
+G+ + ++ A ++ + M + A ++D ++
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428
Query: 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540
+ A L + + + L +A + + + Y+ L
Sbjct: 429 AYTTAARL--FQGTHLPYLFLG--MQHMQL------GNILLANEYLQSSYALFQYDPLLL 478
Query: 541 NNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVWYNISHVAIITECSPFSFST 595
N L + F + F+ AL L + A W N+ H
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA------------- 525
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
+ D AI L+ L + ++ +A++ + A T+L + A
Sbjct: 526 ----YRKLKMYD--AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
Query: 656 SPYLYETHYN 665
SP
Sbjct: 580 SPNEIMASDL 589
Score = 94.5 bits (235), Expect = 2e-20
Identities = 47/387 (12%), Positives = 118/387 (30%), Gaps = 46/387 (11%)
Query: 259 RLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKA 318
+L + +L+ D + V +LN + Y+++ L ++ + A + +
Sbjct: 239 QLVSNHLLT-ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297
Query: 319 CE--FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIR 375
+ + F + L +++ + + + +
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357
Query: 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435
I + +D +P + + + +N + + +Y+ D A +
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 436 FYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
+ + A+ Y ++ G + + L + + + + +L +
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473
Query: 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY-------NAELFNNLALC 546
+ + VA + A+ ++ L + A + NL
Sbjct: 474 DPLLLNELGVVAF--------NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525
Query: 547 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS 606
+ YD + + L L+ N A+V I+ V +
Sbjct: 526 YRKLKMYDAAIDALNQGL--LLSTNDANVHTAIALV-----------------YLHKK-- 564
Query: 607 DTRLAIQCLHLALSIDSSHGLSQNNLA 633
LAI LH +L+I + ++ + L
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLK 591
Score = 59.9 bits (145), Expect = 2e-09
Identities = 20/183 (10%), Positives = 65/183 (35%), Gaps = 10/183 (5%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI-EAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
+ G +A + +A F ++ + +++L + A + +++ +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM-------EAIACIGVNHFYNDQP 441
+ ++ E+ + ++M ++ +++ L A +G +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
+ A+ + L + +A + +AL + + + +T + LA++ N +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES--LAISPNEIMASDLL 590
Query: 502 SHV 504
Sbjct: 591 KRA 593
Score = 30.2 bits (68), Expect = 2.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 18 AVDHFHKRNFEKCAAICTELLAKNPYDKAAW 48
A F + F AI T++L +PY+ +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342
Score = 30.2 bits (68), Expect = 2.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 123 AVDHFHKRNFEKCAAICTELLAKNPYDKAAW 153
A F + F AI T++L +PY+ +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 94.3 bits (235), Expect = 3e-21
Identities = 45/338 (13%), Positives = 95/338 (28%), Gaps = 47/338 (13%)
Query: 325 WWKVQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNA 383
V L + ++ + + + + + I + L++ +
Sbjct: 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82
Query: 384 LDCYPNEVTIMTEMARIFEGLNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 442
+D YP+ + + + + + +Y + T A G + + +
Sbjct: 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142
Query: 443 VALLFYRR--LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500
A+ Y L G + + L + + F +ALS+ V +
Sbjct: 143 QAMAAYFTAAQLMKGCHLP--MLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHE 198
Query: 501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---------NAELFNNLALCCFYSQ 551
+ N + + A ++ L+ L NNL C +
Sbjct: 199 VG-----VVAF---QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250
Query: 552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611
+Y + +AL L A + I ++ + G + A
Sbjct: 251 KYAEALDYHRQAL--VLIPQNASTYSAIGYI-----------------HSLMG--NFENA 289
Query: 612 IQCLHLALSIDSSHGLSQNNLA-VLEAREGHIERASTY 648
+ H AL + S L +E G E
Sbjct: 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 85.8 bits (213), Expect = 3e-18
Identities = 32/320 (10%), Positives = 86/320 (26%), Gaps = 57/320 (17%)
Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
++D + ++ +A + M K +++++D + ++
Sbjct: 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK 71
Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVW 498
+L+ + N + + C + + + +A + L + W
Sbjct: 72 ANELFYLSHKLVDLYPSNPVSWFAVG-CYYLMVGHKNEHARRYLSKATT--LEKTYGPAW 128
Query: 499 YNISHV---------AI--------LNALSTSVYN---------DQPEVALLFYRRLLQM 532
H A+ L + ++A F+ + L +
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-------LNENAADVWYNISHVAII 585
+ + + + + F + ++ F AL + + N+ HV
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV--- 245
Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
A+ AL + + + + + + + G+ E A
Sbjct: 246 --------------CRKLKKYA--EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289
Query: 646 STYLQAAAASSPYLYETHYN 665
Y A +
Sbjct: 290 VDYFHTALGLRRDDTFSVTM 309
Score = 81.2 bits (201), Expect = 8e-17
Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 37/235 (15%)
Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
YN E + LQ N ++ +LA +Y+ + M + + A
Sbjct: 3 YNKPSETVIPESVDGLQ---ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHAS 57
Query: 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ--QYD 554
H+ L L ++ +L+ + N + + C + + +
Sbjct: 58 CLPV--HIGTLVEL------NKANELFYLSHKLVDLYPSNPVSWFAVG-CYYLMVGHKNE 108
Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
+A +L + W H ++ D A+
Sbjct: 109 HARRYLSKATTL--EKTYGPAWIAYGHS-----------------FAVESEHDQ--AMAA 147
Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A + L + + + + A + A + +P + V+
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Score = 77.7 bits (192), Expect = 1e-15
Identities = 23/253 (9%), Positives = 65/253 (25%), Gaps = 39/253 (15%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
+ + + H+YN ++ +++ ++A + + + +
Sbjct: 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82
Query: 486 LSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
+ L + W+ + + E A + + + +
Sbjct: 83 VD--LYPSNPVSWFAVG-----CYYLMV--GHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605
++D + + A L + I +
Sbjct: 134 SFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLE-----------------YGLTN- 173
Query: 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA---------AASS 656
+++LA + ALSI + + V+ + G + A + A +
Sbjct: 174 -NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 657 PYLYETHYNQAVI 669
N +
Sbjct: 233 DKWEPLLNNLGHV 245
Score = 30.3 bits (69), Expect = 2.1
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 18 AVDHFHKRNFEKCAAICTELLAKNPYDKAAW 48
A H++ +F+ C + + ++ K+P+ +
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
Score = 30.3 bits (69), Expect = 2.1
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 123 AVDHFHKRNFEKCAAICTELLAKNPYDKAAW 153
A H++ +F+ C + + ++ K+P+ +
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 90.6 bits (225), Expect = 3e-19
Identities = 32/254 (12%), Positives = 78/254 (30%), Gaps = 5/254 (1%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
G F A + A+ F + ++I M + + + AL
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
N ++ ++ L N + K + + D + + + ++ + +
Sbjct: 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIL 507
+ E+ N A +D + ++ A+ L ++ I+ +
Sbjct: 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGIAPLVGKA 419
Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
L+ + + A + ++ + + LA + D +T FE + LA
Sbjct: 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479
Query: 568 LNENAADVWYNISH 581
+ I+
Sbjct: 480 RTM--EEKLQAITF 491
Score = 82.5 bits (204), Expect = 1e-16
Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 23/293 (7%)
Query: 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434
+D + N+ + + K ++ + + + +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279
Query: 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 494
+ ++ + L++ N+ ++ + F Q YD F++A L +
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPEN 337
Query: 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 554
+ ++ ++ + + + E+ N A +D
Sbjct: 338 IFPYIQLA-----CLAY---RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
+ ++ A+ L ++ I+ + T + + A
Sbjct: 390 KALKQYDLAIEL--ENKLDGIYVGIAPL----------VGKATLLTRNPTVENFIEATNL 437
Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
L A +D ++ LA ++ ++ I+ A T + +A + + E
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490
Score = 78.2 bits (193), Expect = 3e-15
Identities = 54/359 (15%), Positives = 102/359 (28%), Gaps = 41/359 (11%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAI----------D 378
L CY S+G +++ + AL + +R L + A+ D
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104
Query: 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI----LKRDATCMEAIACIGVN 434
+++ M+++ E ++ + + K E + +
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164
Query: 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL---ALN 491
+ + L F + L + YD F +A L L+
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224
Query: 492 ENAADVWYNISHVAILNALSTSVYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550
+N D L + P A ++ +++ + +AL
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADR 283
Query: 551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610
F++AL L + N + V+Y+ + FI +
Sbjct: 284 NDSTEYYNYFDKALKL--DSNNSSVYYHRGQM-----------------NFILQ--NYDQ 322
Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A + A +D + LA L RE + T A P E A I
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381
Score = 70.2 bits (172), Expect = 8e-13
Identities = 29/345 (8%), Positives = 83/345 (24%), Gaps = 47/345 (13%)
Query: 332 KCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390
+ L ++A + + + + + ++ +
Sbjct: 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170
Query: 391 VTIMTEMARIFEGLNNMPMSVKYYK-LILKRDATCMEAIACIGVNHFYNDQPEV---ALL 446
A E + L + + +A + + L
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES------FTKAARLFEEQLD 224
Query: 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
++ A + + F ++A+ L N+ + ++
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS---YIYMA---- 277
Query: 507 LNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
+ D+ ++ + L++ N+ ++ + F Q YD F++A
Sbjct: 278 ------LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331
Query: 565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624
L + + ++ + + + A
Sbjct: 332 EL--DPENIFPYIQLACL-----------------AYREN--KFDDCETLFSEAKRKFPE 370
Query: 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
N A + + ++A A L + A +
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415
Score = 45.9 bits (109), Expect = 3e-05
Identities = 32/270 (11%), Positives = 72/270 (26%), Gaps = 35/270 (12%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSL-- 488
G F N + + A+ +Y L+ L + ++NL+ C VV +AL L
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALE--LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70
Query: 489 -----------------------------ALNENAADVWYNISHVAILNALSTSVYNDQP 519
+LN + D LN + S ++
Sbjct: 71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130
Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
++ A+ + F+ L+ A + + + +
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190
Query: 580 SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 639
+ F + + + + +S + + + +
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250
Query: 640 GHIERASTYLQAAAASSPYLYETHYNQAVI 669
A ++ A P ++ A+I
Sbjct: 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALI 279
Score = 43.2 bits (102), Expect = 2e-04
Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
A + F +++YD + + A L L E+ + N+S A ++
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWA--LELKED-PVFYSNLS--ACYVSVG------ 53
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER-ALSLALNENAADVW 576
+ + + L++ +++ A ++ + +L+ N+ + +
Sbjct: 54 DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113
Query: 577 YN 578
Sbjct: 114 LE 115
Score = 41.7 bits (98), Expect = 7e-04
Identities = 16/151 (10%), Positives = 41/151 (27%), Gaps = 10/151 (6%)
Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
+QL + + + F+ A +F E + + +A+ A++
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401
Query: 387 YPNEVTIMTEMARIF---------EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY 437
I +A + + N + + K D +A +
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461
Query: 438 NDQPEVALLFYRRLLQMGLYNAELFNNLALC 468
+ + A+ + + E +
Sbjct: 462 QEDIDEAITLFEESADLARTMEEKLQAITFA 492
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 88.6 bits (220), Expect = 1e-18
Identities = 53/403 (13%), Positives = 112/403 (27%), Gaps = 26/403 (6%)
Query: 270 DGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQ 329
+G F S + + +K K L E L E + + +T F +
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP---SNTSLASFFGIFDSHL 178
Query: 330 LGKCYFSLGLIREAQQQFNSAL---NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
+ A + AL TD + + D +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446
N + NN+ + + + T + + + + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297
Query: 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
F+++ + + + + F Q Y F++A SL N + ++
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLA---- 351
Query: 507 LNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
+ Q + F+ E+ A +D + ++ A
Sbjct: 352 ------CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405
Query: 565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624
L E + I + S + L + + AI+ L A +D
Sbjct: 406 RL--EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA---AIKLLTKACELDPR 460
Query: 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
++ LA L+ + I+ A + +A + + E
Sbjct: 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503
Score = 85.9 bits (213), Expect = 9e-18
Identities = 52/355 (14%), Positives = 101/355 (28%), Gaps = 47/355 (13%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAI-DIGRNALDCY 387
+ CY S G + + + AL +A +R L A+ D+ +L+
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124
Query: 388 PNEVTIMTEMARIF----EGLNNMPMSVKYYKL--ILKRDATCMEAIACI-----GVNHF 436
+ +I + R + N +S + +L + + +
Sbjct: 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184
Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENA 494
+ + A LQ + +A Y +++ L ENA
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL--RENA 242
Query: 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 554
A L + A + + + + + LAL +
Sbjct: 243 ALALCYTGIFHFLK--------NNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQ 293
Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
F++A+ L N +Y+ + FI D + A +
Sbjct: 294 EFFKFFQKAVDL--NPEYPPTYYHRGQM-----------------YFILQ--DYKNAKED 332
Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A S++ + LA L ++G + + P L E A I
Sbjct: 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387
Score = 84.8 bits (210), Expect = 2e-17
Identities = 29/261 (11%), Positives = 75/261 (28%), Gaps = 14/261 (5%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN 389
G +F + +AQ ++N ++I + + + A+D P
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449
+++ L + + + ++ + + + + + + F+
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368
Query: 450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNA 509
E+ A +D + ++ A L E + I I A
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEEVQEKIHVGIG-PLIGKA 425
Query: 510 LSTSVYNDQPEV---------ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 560
+ + Q A+ + ++ + + LA ++ D + F
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 561 ERALSLALNENAADVWYNISH 581
E + LA + +
Sbjct: 486 EDSAILARTM--DEKLQATTF 504
Score = 76.3 bits (188), Expect = 9e-15
Identities = 41/354 (11%), Positives = 96/354 (27%), Gaps = 43/354 (12%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
G +F+ EA + + A+ + + + YI + I+ AL+
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQPEV 443
P+ + A E L N ++ ++ A+ + E
Sbjct: 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149
Query: 444 ALLFYRRLLQMGLYNAELFNNLAL--------CCFYSQQYDMVVTCFERALSLALNENAA 495
R Q+ N L + + S YD A L +A
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--LQRLYSAT 207
Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
D Y +++ + + D L + A + F
Sbjct: 208 DEGYLVANDLLTKST------DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261
Query: 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615
+ +++L + + ++ L + +++ +
Sbjct: 262 AQVLLQESINLHPT---PNSYIFLALT-----------------LADKE--NSQEFFKFF 299
Query: 616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A+ ++ + + + + + A Q A + +P + A +
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353
Score = 75.1 bits (185), Expect = 2e-14
Identities = 31/364 (8%), Positives = 80/364 (21%), Gaps = 58/364 (15%)
Query: 332 KCYFSLGLIREAQQQFNSALNQFTDIE-----AFIRMIRVYIRLDQPIRAIDIGRNALDC 386
K E+ F A+ + + + + R + N
Sbjct: 94 KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 387 YPNEVTIMTEMARIFEGLN---------------NMPMSVKYYKLILKRDATCMEAIACI 431
++ + N + L+R + + +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 432 GVNHFYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 489
+ L + A + F + +++L
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 490 LNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCC 547
+ + ++ D+ + F+++ + + + +
Sbjct: 274 PT---PNSYIFLA----------LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
F Q Y F++A SL N + ++ + L+ QG
Sbjct: 321 FILQDYKNAKEDFQKAQSL--NPENVYPYIQLACL-----------------LYKQG--K 359
Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
+ + + A + G + A A + H
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419
Query: 668 VISN 671
+
Sbjct: 420 PLIG 423
Score = 46.3 bits (110), Expect = 3e-05
Identities = 24/238 (10%), Positives = 55/238 (23%), Gaps = 37/238 (15%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
A N F ++ ++ + ++ A+ L+ N + NIS A +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNIS--ACYISTG------D 74
Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA--------------- 563
E + F + L++ +++ A + +
Sbjct: 75 LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134
Query: 564 ------LSLALNENAADVWYNISHVAI----ITECSPFSFSTHTSYLFIQGISDTRLAIQ 613
++ + + F +H + S+ A
Sbjct: 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194
Query: 614 CLHLALSIDSSHGLSQNNLA--VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
L AL S +A +L + +
Sbjct: 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252
Score = 37.8 bits (88), Expect = 0.012
Identities = 15/137 (10%), Positives = 37/137 (27%), Gaps = 10/137 (7%)
Query: 332 KCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV 391
+ I + F++A+ Q+ A RL++ I +G L +
Sbjct: 379 EVPTFFAEILTDRGDFDTAIKQYD--IA--------KRLEEVQEKIHVGIGPLIGKATIL 428
Query: 392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL 451
+ ++K + D +A + ++ + A+ +
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488
Query: 452 LQMGLYNAELFNNLALC 468
+ E
Sbjct: 489 AILARTMDEKLQATTFA 505
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 85.1 bits (211), Expect = 1e-17
Identities = 38/343 (11%), Positives = 97/343 (28%), Gaps = 47/343 (13%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
+ ++G + A + + A ++ + ++ + A D + L P
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 389 N---------------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV 433
+ E+ + A G + ++ + IL+ E
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
+P A+ + ++ N E F ++ + +++ ++ L L+++
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQD 243
Query: 494 AADVWYNISHVAILNALSTSVYND----QPEVALLFYRRLLQM----GLYNAELFNNLAL 545
+ + V LN L S + A Y +++ Y +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605
C ++ + L + + + + + +I E
Sbjct: 304 CFSKDEKPVEAIRVCSEV--LQMEPDNVNALKDRAEAYLIEE------------------ 343
Query: 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 648
AIQ A + + + L + ++ Y
Sbjct: 344 -MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385
Score = 80.5 bits (199), Expect = 3e-16
Identities = 39/355 (10%), Positives = 103/355 (29%), Gaps = 41/355 (11%)
Query: 334 YFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTI 393
+ S G+ + + ++ D+E + + + + Q A+ A+D P+
Sbjct: 6 HHSSGVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62
Query: 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453
A +F + ++ +++ A G + + A ++++L+
Sbjct: 63 YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122
Query: 454 MGLYNAELFN---------------NLALCCFYSQQYDMVVTCFERALSLALNENAADVW 498
E + AL F S Y + ++ L + A++
Sbjct: 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI--LEVCVWDAELR 180
Query: 499 YNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 558
+ +P A+ + ++ N E F ++ + +++ ++
Sbjct: 181 ELRAEC--FIKE------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232
Query: 559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618
L L+++ + + V + L G A
Sbjct: 233 EVRECLK--LDQDHKRCFAHYKQVKKLN-----KLIESAEELIRDG--RYTDATSKYESV 283
Query: 619 LSIDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ + S S+ + +++ A P ++A
Sbjct: 284 MKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338
Score = 72.0 bits (177), Expect = 2e-13
Identities = 49/349 (14%), Positives = 95/349 (27%), Gaps = 45/349 (12%)
Query: 329 QLGKCYFSLGLIREAQQQFNSAL----------------NQFTDIEAFIRMIRVYIRLDQ 372
Q G G + EA+ F L + +++
Sbjct: 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
Query: 373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIG 432
AI L+ + + A F ++ K K EA I
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 433 VNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC------------FYSQQYDMVVT 480
++ E++L R L++ + F + +Y +
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Query: 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540
+E + + A+ + +++P A+ +LQM N
Sbjct: 279 KYESVM--KTEPSIAEYTVR----SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Query: 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL 600
+ A + YD + +E A NEN + + + + S Y
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLK-----QSQKRDYY 385
Query: 601 FIQGISDTRLAIQCL----HLALSIDSSHGLSQNNLAVLEAREGHIERA 645
I G+ + + LAL + ++ E + I A
Sbjct: 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Score = 56.6 bits (137), Expect = 1e-08
Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 22/215 (10%)
Query: 310 DLAVES-TKACEFRDW--WWKVQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIR 365
A+ K E W + +C+ G R+A +A + + EAF ++
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219
Query: 366 VYIRLDQPIRAIDIGRNAL-------DCYPN-----EVTIMTEMARIFEGLNNMPMSVKY 413
+Y +L ++ R L C+ + ++ + E A +
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279
Query: 414 YKLILKRDATCMEAIACIGVN----HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
Y+ ++K + + E +++P A+ +LQM N + A
Sbjct: 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504
+ YD + +E A NEN + +
Sbjct: 340 LIEEMYDEAIQDYETAQE--HNENDQQIREGLEKA 372
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 26/149 (17%)
Query: 529 LLQMGLY-----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 583
L LY + E L + Q ++ F A+ + + +Y + V
Sbjct: 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATV- 69
Query: 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE 643
G ++ A+ L + + ++ L ++G ++
Sbjct: 70 ----------------FLAMG--KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111
Query: 644 RASTYLQAAAASSPYLYETHYNQAVISNL 672
A + S+P E Q+ +
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 83.1 bits (206), Expect = 3e-17
Identities = 29/273 (10%), Positives = 80/273 (29%), Gaps = 28/273 (10%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
+ ++G + A + + A ++ + ++ + A D + L P
Sbjct: 43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 389 N---------------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV 433
+ E+ + A + ++ + IL+ E
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
+P A+ + ++ N E F ++ + +++ ++ L L+++
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQD 220
Query: 494 AADVWYNISHVAILNALSTSVYN----DQPEVALLFYRRLLQM----GLYNAELFNNLAL 545
+ + V LN L S + A Y +++ Y +
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280
Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
C ++ + L + + + +
Sbjct: 281 CFSKDEKPVEAIRICSEV--LQMEPDNVNALKD 311
Score = 73.8 bits (182), Expect = 3e-14
Identities = 36/333 (10%), Positives = 93/333 (27%), Gaps = 38/333 (11%)
Query: 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415
D+E + + + + Q A+ A+D P+ A +F + ++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 416 LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL---------- 465
++ A G + + A ++++L+ E
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 466 -----ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE 520
AL F Y +T ++ L + A++ + +P
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILE--VCVWDAELRELRAEC--FIKE------GEPR 171
Query: 521 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 580
A+ + ++ N E F ++ + +++ ++ L L+++ + +
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYK 229
Query: 581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ----NNLAVLE 636
V + + + L G A + + S +
Sbjct: 230 QVKKLNKLIESAEE-----LIRDG--RYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282
Query: 637 AREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+++ A P ++A
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315
Score = 54.2 bits (131), Expect = 6e-08
Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 40/243 (16%)
Query: 310 DLAVES-TKACEFRDW--WWKVQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIR 365
A+ K E W + +C+ G R+A +A + + EAF ++
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 196
Query: 366 VYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM 425
+Y +L ++ R L + +YK + K +
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQ-----------------DHKRCFAHYKQVKKLNKLIE 239
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNLALCCFYSQQYDMVVTC 481
A + + A Y +++ Y + C ++ +
Sbjct: 240 SAEE-----LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294
Query: 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN 541
L + + + + + + + A+ Y + + ++
Sbjct: 295 CSEV--LQMEPDNVNALKDRAE--AYLIE------EMYDEAIQDYEAAQEHNENDQQIRE 344
Query: 542 NLA 544
L
Sbjct: 345 GLE 347
Score = 47.3 bits (113), Expect = 1e-05
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 21/137 (15%)
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
+ E L + Q ++ F A+ + + +Y + V
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATV------------- 46
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
G ++ A+ L +++ ++ L ++G ++ A + S
Sbjct: 47 ----FLAMG--KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100
Query: 656 SPYLYETHYNQAVISNL 672
+P E ++ +
Sbjct: 101 NPSEQEEKEAESQLVKA 117
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 83.8 bits (207), Expect = 4e-17
Identities = 44/353 (12%), Positives = 88/353 (24%), Gaps = 48/353 (13%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
L G A + A L Q A +L +
Sbjct: 56 LLAYLKHLKGQNEAALECLRKA-----------------EELIQQEHADQAEIRSLVTWG 98
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN---------- 438
N A ++ + + Y +
Sbjct: 99 N-------YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG 151
Query: 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV---VTCFERALSLALNENAA 495
+Q E A + + + L+ N E + LA+ + + + +A+ L N +
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQ 209
Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
+ ++ L ++ L+ ++ + A + D
Sbjct: 210 YLKVLLA----LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265
Query: 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615
+ ++AL N A + I + + Y + + A+ L
Sbjct: 266 AIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323
Query: 616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP---YLYETHYN 665
A + + + LA L A E A Y Q + H
Sbjct: 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376
Score = 78.8 bits (194), Expect = 2e-15
Identities = 42/369 (11%), Positives = 103/369 (27%), Gaps = 58/369 (15%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRM-----------IRVYIRLDQPIRAID 378
Y+ +G + + Q + + + R+ R+ +Q RA
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPM---SVKYYKLILKRDATCMEAIACIGVN- 434
AL+ P + +A L+N P ++ + ++ + + +
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 435 ---HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
++ L+ ++ + A + D + ++AL
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--I 277
Query: 492 ENAADVWYNI-----SHVAILNALSTSVYNDQPEV------ALLFYRRLLQMGLYNAELF 540
N A + I + V + L + + ++ A+ ++ + +
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337
Query: 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL 600
+ LA + QY+ F++ S L A + + L
Sbjct: 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH---------------LRYGNFQL 382
Query: 601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660
+ D AI + I+ + L+ + + +
Sbjct: 383 YQMKCEDK--AIHHFIEGVKINQKSREKEKMKDKLQK----------IAKMRLSKNGADS 430
Query: 661 ETHYNQAVI 669
E + A +
Sbjct: 431 EALHVLAFL 439
Score = 65.7 bits (160), Expect = 2e-11
Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 38/270 (14%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
L K E ++ AL + + + Y R D+P +AI++ + AL+ P
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIG-VNHFYNDQPEVALLF 447
N + ++ Y + + + + A+
Sbjct: 279 NNAYLHCQIGCC------------YRAKVFQVMNLRENGMYGKRKLLELIGH----AVAH 322
Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN------- 500
++ + + + LA + QY+ F++ S L A + +
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382
Query: 501 ----ISHVAI---LNALSTSVYNDQPEVALLFYRRLLQMGLY----NAELFNNLALCCFY 549
AI + + + + + E +++ +M L ++E + LA
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442
Query: 550 SQQYDMVVTCFERALSLALNENAADVWYNI 579
+++ ER L
Sbjct: 443 NEKMQQADEDSERGLE--SGSLIPSASSWN 470
Score = 60.3 bits (146), Expect = 1e-09
Identities = 33/256 (12%), Positives = 70/256 (27%), Gaps = 39/256 (15%)
Query: 431 IGVNHFYNDQPEVALLFYRRLL---------QMGLYNAELFNNLALCCFYSQQYDMVVTC 481
+ Q E AL R+ Q + + + N A ++ + V
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116
Query: 482 FERALSLALNENAADVWYNISHVAILNALSTSVYN---DQPEVALLFYRRLLQMGLYNAE 538
++ + E + Y I + + +Q E A + + + L+ N E
Sbjct: 117 VDKVK--HVCEKFSSP-YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173
Query: 539 LFNNLALCCFYSQQYDMV---VTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
+ LA+ + + + +A+ L N + + ++
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALK------------- 218
Query: 596 HTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653
L + + AL + A R+ ++A L+ A
Sbjct: 219 ----LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274
Query: 654 ASSPYLYETHYNQAVI 669
P H
Sbjct: 275 EYIPNNAYLHCQIGCC 290
Score = 56.5 bits (136), Expect = 2e-08
Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 33/227 (14%)
Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516
+ A + N LA Q + + C +A L + + AD S V N +
Sbjct: 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEEL-IQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 517 DQPEVALLFYRRLLQM--------GLYNAELFNNL--ALCCFYSQQYDMVVTCFERALSL 566
+ ++ ++ + + + EL Q + CFE+AL
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE- 166
Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
+ ++ + ++ AI L A+ ++ +
Sbjct: 167 -KKPKNPEFTSGLAIA----------------SYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209
Query: 627 LSQNNLAV----LEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ LA+ + ++ A +P + + + A
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 78.5 bits (194), Expect = 9e-16
Identities = 44/285 (15%), Positives = 83/285 (29%), Gaps = 32/285 (11%)
Query: 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
E ++P +V ++ +++D MEA +G N+Q +A+ RR L++
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128
Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-------AILN 508
N LA+ L A +
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKR 186
Query: 509 ALSTSVYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
L + + + + +++ + ++ L + S +YD V CF ALS+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
N +W + L S+ A+ AL + +
Sbjct: 247 --RPNDYLLWNKLGAT-----------------LANGNQSE--EAVAAYRRALELQPGYI 285
Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671
S+ NL + G A + A +S
Sbjct: 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330
Score = 68.5 bits (168), Expect = 2e-12
Identities = 46/308 (14%), Positives = 86/308 (27%), Gaps = 49/308 (15%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
+ G G + A F +A+ Q +EA+ + +Q + AI R L+
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
P+ T + +A F + + + + + + P A L
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILR----------DWLRY---------TPAYAHLV 169
Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507
G + + V F A+ L DV + +
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG--VLF 227
Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
N + + A+ + L + + L+N L Q + V + RA L
Sbjct: 228 NLS------GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA--LE 279
Query: 568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL 627
L YN+ G R A++ AL++
Sbjct: 280 LQPGYIRSRYNLGIS-----------------CINLG--AHREAVEHFLEALNMQRKSRG 320
Query: 628 SQNNLAVL 635
+ +
Sbjct: 321 PRGEGGAM 328
Score = 51.6 bits (124), Expect = 4e-07
Identities = 42/271 (15%), Positives = 78/271 (28%), Gaps = 41/271 (15%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
LG A L + + A + + + +A +I R+ L P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 389 N---------EVTIMTEMARIFEGLNNMPMSVKY------YKLILKRDATCMEAIA--CI 431
E + L ++ + + ++ D T ++ +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
GV + + + A+ + L + + L+N L Q + V + RAL L
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL--ELQ 281
Query: 492 ENAADVWYNISHV------------AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL 539
YN+ L AL+ Q + + G + +
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM-----QRKSRGPRG----EGGAMSENI 332
Query: 540 FNNLALCCFYSQQYDMVVTCFERALSLALNE 570
++ L L Q D R LS L
Sbjct: 333 WSTLRLALSMLGQSDAYGAADARDLSTLLTM 363
Score = 51.2 bits (123), Expect = 6e-07
Identities = 31/194 (15%), Positives = 52/194 (26%), Gaps = 31/194 (15%)
Query: 482 FERALSLALNENAADVWYNI----SHVAILNALSTSVYNDQPEVALLFYRRLLQM----G 533
FERA + E+ D W + +A +A + +D ++ Y + Q
Sbjct: 3 FERAK--SAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593
L + L V FE A+ + + W +
Sbjct: 61 LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTT----------- 107
Query: 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653
LAI L L + + + LAV E +A L+
Sbjct: 108 ------QAENEQEL--LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159
Query: 654 ASSPYLYETHYNQA 667
+P
Sbjct: 160 RYTPAYAHLVTPAE 173
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 76.2 bits (188), Expect = 1e-15
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 37/216 (17%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+ + L L + +AL ++ ++AD ++ V +
Sbjct: 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVV----------FQT 83
Query: 518 Q--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENAA 573
+ P++A YR+ L NA + NN F +Q Y+ A L +
Sbjct: 84 EMEPKLADEEYRKALASDSRNARVLNNYGG--FLYEQKRYEEAYQRLLEASQDTLYPERS 141
Query: 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633
V+ N+ V A + +L ++ + +A
Sbjct: 142 RVFENLGLV-----------------SLQMK--KPAQAKEYFEKSLRLNRNQPSVALEMA 182
Query: 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
L +E A Y A + +
Sbjct: 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218
Score = 66.9 bits (164), Expect = 2e-12
Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 33/234 (14%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
G+ + E A + R+ L++ +A+ LA+ + + + +AL+ +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--D 101
Query: 492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFY 549
A V N L + E A Q LY + +F NL L
Sbjct: 102 SRNARVLNNYG--GFLYEQ------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153
Query: 550 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR 609
++ FE++L L N N V ++ + L+ + +
Sbjct: 154 MKKPAQAKEYFEKSLRL--NRNQPSVALEMADL-----------------LYKER--EYV 192
Query: 610 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663
A Q L + S L + A++Y P E
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246
Score = 54.2 bits (131), Expect = 3e-08
Identities = 44/242 (18%), Positives = 69/242 (28%), Gaps = 47/242 (19%)
Query: 328 VQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
+QLG Y G +A+ AL + +A + V+ +P A + R AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446
LNN G + + E A
Sbjct: 101 DSRNA----------RVLNNY------------------------GGFLYEQKRYEEAYQ 126
Query: 447 FYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504
Q LY + +F NL L ++ FE++L LN N V ++
Sbjct: 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMA-- 182
Query: 505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
+L + A +Y Q G NA + D + +
Sbjct: 183 DLLYKE------REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236
Query: 565 SL 566
L
Sbjct: 237 RL 238
Score = 28.8 bits (65), Expect = 5.7
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ L + + G+ E+A L+ A P + H AV+
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 74.2 bits (183), Expect = 3e-15
Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 30/211 (14%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
+ + LA+ Q Y E AL + W + + L
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDAL--KSDPKNELAWLVRAEI--YQYL------KV 57
Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALC-CFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ A +R+ L + +AE+ NN C + + F++AL+
Sbjct: 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
N QG LA L +L+ + LA +
Sbjct: 118 NKGIC-----------------SAKQG--QFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158
Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAV 668
G + A Y + + L
Sbjct: 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189
Score = 41.5 bits (98), Expect = 3e-04
Identities = 37/175 (21%), Positives = 54/175 (30%), Gaps = 4/175 (2%)
Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
QL Y R+A AL A++ +Y L +A + R AL
Sbjct: 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71
Query: 387 YPNEVTIMTEMARIFEG-LNNMPMSVKYYKLILKRD--ATCMEAIACIGVNHFYNDQPEV 443
P+ I G LN S+ Y+ L T A G+ Q +
Sbjct: 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 498
A + +R L F LA + Q F++ S A D+
Sbjct: 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 72.9 bits (179), Expect = 7e-15
Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 32/218 (14%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN- 516
+ + + Q V+ F + ++L N + +++Y + S
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 517 -------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569
+ A LFY+ LLQ N + A Q + +E+ L L
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--E 118
Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629
+ + +Y ++ + ++ + LS + ++
Sbjct: 119 ADNLAANIFLG-----------------NYYYLTA-EQEKKKLETDYKKLSSPTKMQYAR 160
Query: 630 NNLAVLEAREGHIERASTYLQAAAASSP--YLYETHYN 665
+ + E+A LQ P +T
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198
Score = 72.1 bits (177), Expect = 1e-14
Identities = 28/225 (12%), Positives = 64/225 (28%), Gaps = 27/225 (12%)
Query: 355 TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY 414
++ ++ + I Q +A+ R + + + Y+
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------------EMYYW 43
Query: 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474
+ K + + + + N + A LFY+ LLQ N + A Q
Sbjct: 44 TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103
Query: 475 YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534
+ +E+ L L + + + L +Q + L + L
Sbjct: 104 EKDALRMYEKILQ--LEADNLAANIFLGNYYYLT-------AEQEKKKLETDYKKLSSPT 154
Query: 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
L ++ +Y+ ++ + + A I
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199
Score = 58.6 bits (142), Expect = 6e-10
Identities = 27/193 (13%), Positives = 58/193 (30%), Gaps = 20/193 (10%)
Query: 328 VQLGKCYFSLGLIREAQQQFNSAL-----------------NQFTDIEAFIRMIRVYIRL 370
+Q G +A F + N + + Y +
Sbjct: 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430
+A + L PN V + A + +++ Y+ IL+ +A + A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 431 IGVNHFYN--DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
+G N++Y +Q + L + L L ++ +Y+ ++ +
Sbjct: 128 LG-NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186
Query: 489 ALNENAADVWYNI 501
+ A I
Sbjct: 187 FPSTEAQKTLDKI 199
Score = 50.1 bits (120), Expect = 4e-07
Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 5/134 (3%)
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
+ + + Q V+ F + ++L N + +++Y + S +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
+Y + + A L ++ A ++ G + A +
Sbjct: 61 ALAY---KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 656 SPYLYETHYNQAVI 669
+
Sbjct: 118 EADNLAANIFLGNY 131
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 73.8 bits (182), Expect = 1e-14
Identities = 34/263 (12%), Positives = 88/263 (33%), Gaps = 21/263 (7%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYI---RLDQPIRAIDIGRNAL 384
+ F EA + FN + + R Y + D + I+ + +
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA 444
+ + +I ++++ Y+ + RD T ++ IG + +A
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504
+ + + ++ + ++F L +Y+++Y + F + L L N + +
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRA-- 183
Query: 505 AILNALSTSVYNDQPEVALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMV 556
A + + + +A +Y +L+++ E +A ++
Sbjct: 184 ---RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240
Query: 557 VTCFERALSLALNENAADVWYNI 579
++ LAL+ +
Sbjct: 241 DAAWKNI--LALDPTNKKAIDGL 261
Score = 66.9 bits (164), Expect = 3e-12
Identities = 23/212 (10%), Positives = 57/212 (26%), Gaps = 28/212 (13%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
N ++ A F + Y + F + + N+ ++ + D
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRA-----VCYYELAKYD 54
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ + Y + + F Q + + ++ A+ + D++
Sbjct: 55 LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYG 112
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
I + +G + LAIQ + + ++ L
Sbjct: 113 QIGSY-----------------FYNKG--NFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+A + P +Y + +A
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185
Score = 64.6 bits (158), Expect = 1e-11
Identities = 31/289 (10%), Positives = 79/289 (27%), Gaps = 41/289 (14%)
Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY---Y 414
+ R + + AI++ N I A + L ++ K Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474
+ G Q +A+ Y+ + +++ + +
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123
Query: 475 YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534
+ + + E+ + V+Y + A YN + A + ++L++
Sbjct: 124 FPLAIQYMEKQIR--PTTTDPKVFYELG-----QAYY---YNKEYVKADSSFVKVLELKP 173
Query: 535 YNAELFNNLALCCFY---SQQYDMVVTCFERALSL------ALNENAADVWYNISHVAII 585
+ A + + +E+ + + + + I+
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA----- 228
Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634
Y I D A L++D ++ + + L +
Sbjct: 229 ------------YYYTINR--DKVKADAAWKNILALDPTNKKAIDGLKM 263
Score = 64.6 bits (158), Expect = 1e-11
Identities = 27/256 (10%), Positives = 68/256 (26%), Gaps = 41/256 (16%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
+ F N+ A+ + +L + ++N A+C + +YD+ E
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 486 LS-LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA 544
S + + + + L Q +A+ Y+ + +++ +
Sbjct: 64 FSKVNATKAKSADFEYYG-----KILM---KKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115
Query: 545 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG 604
+ + + + E+ + V+Y + +
Sbjct: 116 SYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQA-----------------YYYNK 156
Query: 605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST----YLQA-------AA 653
+ A L + + + A A + + Y + A
Sbjct: 157 --EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
Query: 654 ASSPYLYETHYNQAVI 669
L E + A
Sbjct: 215 KYKDELIEANEYIAYY 230
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 74.7 bits (184), Expect = 2e-14
Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 25/268 (9%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
+ G G + +A+ Q D EA+ + + AI + L+
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
PN + + +A + ++ + + K +K++ + + + + +
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189
Query: 448 YRRL------------LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 495
L + + +L L + S +++ + F AL++
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDY 247
Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
+W + L+ D+ E A+ Y R L++ NL + C Y
Sbjct: 248 SLWNRLG-----ATLANG---DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 556 VVTCFERALSLALNENAADVWYNISHVA 583
V+ F ALS L + +
Sbjct: 300 AVSNFLTALS--LQRKSRNQQQVPHPAI 325
Score = 73.9 bits (182), Expect = 3e-14
Identities = 38/303 (12%), Positives = 88/303 (29%), Gaps = 30/303 (9%)
Query: 369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI 428
+ + + + E ++P+++ + + + +D EA
Sbjct: 46 TVSASEKGYYF---HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAW 102
Query: 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
+G+ N+ + A++ +R L++ N + LA+ + + +
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK- 161
Query: 489 ALNENAADVWYNISHV-AILNALSTSVYN-DQPEVALLFYRRLLQM--GLYNAELFNNLA 544
N + N + +S S + E Y + + +L L
Sbjct: 162 -QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
Query: 545 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG 604
+ S +++ + F AL+ + +W + L
Sbjct: 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGAT-----------------LANGD 261
Query: 605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664
S+ A++ AL I S+ NL + G A + A +
Sbjct: 262 RSE--EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 665 NQA 667
Sbjct: 320 VPH 322
Score = 65.1 bits (159), Expect = 2e-11
Identities = 40/315 (12%), Positives = 79/315 (25%), Gaps = 51/315 (16%)
Query: 375 RAIDIGRNALDCYPNEVTIMTEMARI--------FEGLNNMPMSVKYYKLILKRDATCME 426
RA + + + EMAR + + S K Y +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486
G+ V +LF + +AE + L + ++ + +R L
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 546
L N ++ + + + + A + ++ L N
Sbjct: 127 EL--QPNNLKALMALA-----VSYTNTSHQQD---ACEALKNWIKQNPKYKYLVKNKKGS 176
Query: 547 CFYSQQYDM----------VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596
+++ V + A + D+ + +
Sbjct: 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL-------------- 222
Query: 597 TSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654
+ G AI + AL++ N L A E A A
Sbjct: 223 ---FHLSG----EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275
Query: 655 SSPYLYETHYNQAVI 669
P + YN +
Sbjct: 276 IQPGFIRSRYNLGIS 290
Score = 62.0 bits (151), Expect = 2e-10
Identities = 20/198 (10%), Positives = 47/198 (23%), Gaps = 23/198 (11%)
Query: 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ 531
+ +++ E + W ++ ++ + + Y +
Sbjct: 2 AMEFERAKAAVESDT--EFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTE 59
Query: 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591
+ L + + E A+ + A+ W +
Sbjct: 60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAI--LQDPGDAEAWQFLGIT--------- 108
Query: 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651
AI L L + ++ + LAV H + A L+
Sbjct: 109 --------QAENENEQ--AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158
Query: 652 AAASSPYLYETHYNQAVI 669
+P N+
Sbjct: 159 WIKQNPKYKYLVKNKKGS 176
Score = 44.3 bits (105), Expect = 9e-05
Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 21/227 (9%)
Query: 330 LGKCYFSLGLIREAQQQFNSAL-----------NQFTDIEAFIRMIRVYIRLDQPIRAID 378
L Y + ++A + + + N+ RM + + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 379 IGRNALDCYPNEVTIMTEMAR--IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436
+ A + + + +F ++ + L +G
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258
Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
D+ E A+ Y R L++ NL + C Y V+ F ALS L + +
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS--LQRKSRN 316
Query: 497 VWYNISHVAILNALST----SVYNDQPEVALLFYRRLLQMGLYNAEL 539
N + DQPE+ L +
Sbjct: 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD--VLLRAF 361
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 71.8 bits (177), Expect = 3e-14
Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 31/228 (13%)
Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
E A + + ++ +A + N A + + + +++AL L+ +AA +Y
Sbjct: 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGA 97
Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
N + + A + + L+ G+ N +LF L +Q + + +
Sbjct: 98 G-----NVYV---VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
RA+ LNEN + + L +G+ D A+
Sbjct: 150 RAVE--LNENDTEARFQFGMC-----------------LANEGMLD--EALSQFAAVTEQ 188
Query: 622 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
D H + N V A + + E+A L A P + + ++
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236
Score = 58.3 bits (142), Expect = 1e-09
Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 31/213 (14%)
Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516
+ Y+ F +A+ N+ A + N + +L+++
Sbjct: 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFA--NLLSSV------ 70
Query: 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 576
++ E AL FY + L++ A + + Y FE+AL D++
Sbjct: 71 NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLF 128
Query: 577 YNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 636
Y + V L +LA+ L A+ ++ + ++ +
Sbjct: 129 YMLGTV-----------------LVKLE--QPKLALPYLQRAVELNENDTEARFQFGMCL 169
Query: 637 AREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A EG ++ A + A P + YN V
Sbjct: 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202
Score = 56.4 bits (137), Expect = 5e-09
Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 27/188 (14%)
Query: 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN 541
+ L + + + S E A + + ++ +A +
Sbjct: 8 HHHSS--GLVPRGSHMASMT-GGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601
N A + + + +++AL L + +AA +Y +V
Sbjct: 62 NFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNV-----------------YV 102
Query: 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661
++ + A AL +G L + + + A YLQ A + E
Sbjct: 103 VKE--MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160
Query: 662 THYNQAVI 669
+ +
Sbjct: 161 ARFQFGMC 168
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 72.3 bits (178), Expect = 7e-14
Identities = 48/309 (15%), Positives = 97/309 (31%), Gaps = 35/309 (11%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
+ G L + EA F + EA+ + ++ AI +A
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRD-----ATCMEAIACIGVNHFYN-- 438
P ++ + +A +N ++ + L+ + + ++A I + +
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145
Query: 439 ------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492
++ L+M +A+L +L + S YD RA+ L
Sbjct: 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRP 203
Query: 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552
+ A +W + L+ ++P+ AL Y R L + + N+A+ Q
Sbjct: 204 DDAQLWNKLG-----ATLANG---NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612
YD+ RA+ + S A + + L + D L
Sbjct: 256 YDLAAKQLVRAIY--MQVGGTTPTGEASREA-----TRSMWDFFRMLLNVMNRPD--LVE 306
Query: 613 QCLHLALSI 621
+
Sbjct: 307 LTYAQNVEP 315
Score = 68.9 bits (169), Expect = 9e-13
Identities = 36/279 (12%), Positives = 79/279 (28%), Gaps = 30/279 (10%)
Query: 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
E L N+ + ++ + + EA +G+ N++ +A++ +
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85
Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN-------ISHVAILN 508
+ + LA+ + + L + I + + +
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWL--LSQPQYEQLGSVNLQADVDIDDLNVQS 143
Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
++ L+M +A+L +L + S YD RA+ L
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-- 201
Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
+ A +W + L A+ + AL I+ +
Sbjct: 202 RPDDAQLWNKLGAT-----------------LANGNRPQ--EALDAYNRALDINPGYVRV 242
Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
N+AV + + A+ L A +
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281
Score = 66.9 bits (164), Expect = 4e-12
Identities = 21/208 (10%), Positives = 50/208 (24%), Gaps = 16/208 (7%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
E L FE + W ++ + N+
Sbjct: 20 YHENPMEEGLSMLKLANLAEAALAFEAVC--QAAPEREEAWRSLG-----LTQA---ENE 69
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ +A++ + + + LA+ + + L +
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL--LSQPQYEQLGS 127
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
+ + + + LH AL ++ + +L VL
Sbjct: 128 VNL--QADVDIDDLNVQSEDFFFAAPNEYRE--CRTLLHAALEMNPNDAQLHASLGVLYN 183
Query: 638 REGHIERASTYLQAAAASSPYLYETHYN 665
+ + A+ L+ A P +
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNK 211
Score = 62.3 bits (152), Expect = 1e-10
Identities = 42/275 (15%), Positives = 73/275 (26%), Gaps = 38/275 (13%)
Query: 406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465
+M + Y E G++ A L + + Q E + +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYN--ISHVAILN---ALSTSVYND--- 517
L +++ + + A L+ V +SH N AL++
Sbjct: 62 GLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALAS--LRAWLL 117
Query: 518 -QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 576
QP+ L L + + +Y T A L +N N A +
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA--LEMNPNDAQLH 175
Query: 577 YNISHVAIITECSPFSFSTHTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNLAV 634
++ + + A L A+ + N L
Sbjct: 176 ASLGVL-----------------YNLSN----NYDSAAANLRRAVELRPDDAQLWNKLGA 214
Query: 635 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A + A A +P YN AV
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 72.5 bits (178), Expect = 1e-13
Identities = 29/340 (8%), Positives = 76/340 (22%), Gaps = 39/340 (11%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
S ++A + L + A L+ R + + A
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
P +V + + L + + + AIA G + + L
Sbjct: 135 LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 194
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
+ + + + ++ +A L + +
Sbjct: 195 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIAS--NGG 250
Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
AL + + L + + + + + ++ +A
Sbjct: 251 GKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH- 303
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
L + Q + + + L A +
Sbjct: 304 -GLTPQQVVAIASNGGG-------------------KQALETVQRLLPVLCQAHGLTPQQ 343
Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 665
++ + + ++R L A +P +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383
Score = 69.4 bits (170), Expect = 2e-12
Identities = 28/341 (8%), Positives = 74/341 (21%), Gaps = 32/341 (9%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
+L ++ A + A L+ R + + A P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
+V + + L + + + AIA G + + L
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
+ + + + + ++ +A L +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNG--GGKQ 321
Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
AL + + L + + + + ++ +A L
Sbjct: 322 AL------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH--GL 373
Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
+ Q + + + L A + ++
Sbjct: 374 TPEQVVAIASNGGGK-------------------QALETVQRLLPVLCQAHGLTPEQVVA 414
Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ + ++R L A +P +
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455
Score = 66.7 bits (163), Expect = 1e-11
Identities = 30/339 (8%), Positives = 74/339 (21%), Gaps = 37/339 (10%)
Query: 337 LGLIREAQQQFNSALNQFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390
EA + +AL + A L+ R + + A P +
Sbjct: 46 GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105
Query: 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR 450
V + + L + + + AIA + + L +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 451 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNAL 510
+ + + ++ +A L + AL
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASNGGG--KQAL 221
Query: 511 STSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570
+ + L + + + + ++ +A L
Sbjct: 222 ------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTP 273
Query: 571 NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQN 630
+ S Q + + + L A + ++
Sbjct: 274 QQVVAIASNSGGK-------------------QALETVQRLLPVLCQAHGLTPQQVVAIA 314
Query: 631 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ + ++R L A +P +
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353
Score = 65.9 bits (161), Expect = 2e-11
Identities = 27/329 (8%), Positives = 69/329 (20%), Gaps = 32/329 (9%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
G +L ++ A + A L+ R + + A P
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
+V + + L + + + AIA + + L
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
+ + + + ++ +A L +
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHD--GGKQ 355
Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
AL + + L + + + + ++ +A L
Sbjct: 356 AL------ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GL 407
Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
+ Q + + + L A + ++
Sbjct: 408 TPEQVVAIASHDGGK-------------------QALETVQRLLPVLCQAHGLTPQQVVA 448
Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSP 657
+ I + A A+
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALT 477
Score = 59.8 bits (145), Expect = 1e-09
Identities = 28/315 (8%), Positives = 70/315 (22%), Gaps = 40/315 (12%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
S G ++A + L + A L+ R + + A
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
P +V + + + L + + + AIA G + + L
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 330
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
+ + + + ++ +A L +
Sbjct: 331 PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA--HGLTPEQVVAIASNGGG- 387
Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
AL + + L + + + + ++ +A
Sbjct: 388 -KQAL------ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQA-- 438
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS- 624
L + + + AL+ ++
Sbjct: 439 HGLTPQQVVAIASNGGGR-------------------PALESIVAQLSRPDPALAALTND 479
Query: 625 HGLSQNNLAVLEARE 639
H ++ L A +
Sbjct: 480 HLVALACLGGRPALD 494
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 68.5 bits (168), Expect = 7e-13
Identities = 28/247 (11%), Positives = 67/247 (27%), Gaps = 33/247 (13%)
Query: 440 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 495
Q EV L ++L A+L + + F +AL A+ +
Sbjct: 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMP 77
Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
+V+ + L+ + + A + +L++ N + +Y + +
Sbjct: 78 EVFNYLG-----IYLTQA---GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129
Query: 556 VVTCFERALSLALNENAADVWYN--------------ISHVAIITECSPFSFSTHTSYLF 601
+ N + + + +
Sbjct: 130 AQDDLLAFY--QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 602 IQGISDTRL---AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658
+ IS+ L S+ + L G ++ A+ + A A++ +
Sbjct: 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247
Query: 659 LYETHYN 665
+ H
Sbjct: 248 NFVEHRY 254
Score = 48.5 bits (116), Expect = 3e-06
Identities = 19/205 (9%), Positives = 49/205 (23%), Gaps = 35/205 (17%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
A + +L++ N + +Y + + + N
Sbjct: 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY--QDDPNDPFRSLW--- 150
Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN--LALCCFYSQQ-YDMVVTCF 560
L + + A ++ + +N L Q + +
Sbjct: 151 ------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 204
Query: 561 ERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620
SL E+ ++ + + G D A LA++
Sbjct: 205 TDNTSL--AEHLSETNFYLGKY-----------------YLSLG--DLDSATALFKLAVA 243
Query: 621 IDSSHGLSQNNLAVLEAREGHIERA 645
+ + + + + G +
Sbjct: 244 NNVHNFVEHRYALLELSLLGQDQDD 268
Score = 47.7 bits (114), Expect = 5e-06
Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 25/156 (16%)
Query: 518 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
Q EV L ++L A+L + + F +AL A+ +
Sbjct: 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMP 77
Query: 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633
+V+ + YL G D A + L +D ++ + N
Sbjct: 78 EVFNYLG-----------------IYLTQAGNFD--AAYEAFDSVLELDPTYNYAHLNRG 118
Query: 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ G + A L A P +
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154
Score = 46.5 bits (111), Expect = 1e-05
Identities = 34/250 (13%), Positives = 58/250 (23%), Gaps = 45/250 (18%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
G Y SLGL A+ F+ AL + E F + + A + + L+ P
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
N G+ +Y + ++A
Sbjct: 109 TYN----------YAHLNR------------------------GIALYYGGRDKLAQDDL 134
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
Q + L L ++ + E +NI
Sbjct: 135 LAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWG---WNIVE----F 186
Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
L E + + +E L D F+ A +A
Sbjct: 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA--VAN 244
Query: 569 NENAADVWYN 578
N +
Sbjct: 245 NVHNFVEHRY 254
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 69.1 bits (169), Expect = 1e-12
Identities = 31/260 (11%), Positives = 75/260 (28%), Gaps = 28/260 (10%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI-------EAFIRMIRVYIRLDQPIRAIDIGRN 382
G F EA + A + + E ++ Y + Q ++
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 383 ALDCYPNEVTIMTEMAR-------IFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC- 430
ALD Y N + ++ + ++ + + L AI+
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226
Query: 431 -IGVNHFYNDQPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFER 484
I ++ + ++A+ +++ ++ ++ L+ + Q E
Sbjct: 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286
Query: 485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA 544
L + + L A+ +++ LL Y + Y + A
Sbjct: 287 GLDHITARSHK---FYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343
Query: 545 LCCFYSQQYDMVVTCFERAL 564
S ++ + + L
Sbjct: 344 AVFESSCHFEQAAAFYRKVL 363
Score = 59.1 bits (143), Expect = 2e-09
Identities = 44/346 (12%), Positives = 95/346 (27%), Gaps = 84/346 (24%)
Query: 342 EAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401
+A+ +E ++ Y + + + Y N T+ + I
Sbjct: 30 DAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89
Query: 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN--- 458
+ +KYY L + G+ F + A+ +YR + +
Sbjct: 90 TPQKKLTGLLKYYSLFFR------------GMYEFDQKEYVEAIGYYREAEKELPFVSDD 137
Query: 459 ---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515
AE +A ++ +Q + + +AL +
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------------------- 170
Query: 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA--- 572
Y+ + + +A + YD + E AL LA++
Sbjct: 171 ----------YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220
Query: 573 -ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-----DSSHG 626
A NI++ Y G D ++A++ A +
Sbjct: 221 IAISLLNIANS----------------Y-DRSG--DDQMAVEHFQKAAKVSREKVPDLLP 261
Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672
L+ + G ++A +++ Y + + L
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFL 306
Score = 56.7 bits (137), Expect = 1e-08
Identities = 42/350 (12%), Positives = 100/350 (28%), Gaps = 83/350 (23%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI---RVYIRLDQPIRAIDIGRNALD 385
+ GK Y + + E + + + T + + + + + AI R A
Sbjct: 70 EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129
Query: 386 CY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439
+ ++A + + +S+ +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ----------------------- 166
Query: 440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----A 495
AL Y+ + + +A + YD + E AL LA++ A
Sbjct: 167 ----ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222
Query: 496 DVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM-----GLYNAELFNNLALCCF 548
NI+ + Y+ ++A+ +++ ++ ++ L+
Sbjct: 223 ISLLNIA----------NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272
Query: 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608
+ Q E L + + + + +LF+Q +
Sbjct: 273 KAGQTQKAFQFIEEGLDHITARS------HKFYKEL--------------FLFLQAVYKE 312
Query: 609 RLAIQCLHLALSIDSSHGL------SQNNLAVLEAREGHIERASTYLQAA 652
+ + +H LS L + A + H E+A+ + +
Sbjct: 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362
Score = 32.9 bits (75), Expect = 0.31
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI--EAFIRMIRVYIRLDQPIRAIDIGRNALDC- 386
L G ++A Q L+ T + + + + + + L
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326
Query: 387 -----YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
+ A +FE + + +Y+ +LK
Sbjct: 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 68.7 bits (168), Expect = 2e-12
Identities = 30/263 (11%), Positives = 78/263 (29%), Gaps = 29/263 (11%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI-------EAFIRMIRVYIRLDQPIRAIDIGRN 382
G A + F A ++ + E F +M Y + Q ++D R
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 383 ALDCY-------PNEVTIMTEMARIFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC- 430
A + Y + + A F L ++ +++ +
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228
Query: 431 -IGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFE 483
IG+ Q E A+ +++R + + + + + + + + D
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288
Query: 484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL 543
+ ++ + A +S L +L S +++ + + + ++
Sbjct: 289 KGMAYS---QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345
Query: 544 ALCCFYSQQYDMVVTCFERALSL 566
A + + F + +
Sbjct: 346 AKYYHERKNFQKASAYFLKVEQV 368
Score = 54.4 bits (131), Expect = 6e-08
Identities = 44/344 (12%), Positives = 105/344 (30%), Gaps = 57/344 (16%)
Query: 334 YFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTI 393
Y+SL R + IE R+ + + +D+ + L+ Y N
Sbjct: 54 YYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT---GLLEYYFNFF-- 108
Query: 394 MTEMARIFEGLNNMPMSVKYYKLILKRDAT----CMEAIAC--IGVNHFYNDQPEVALLF 447
++K++K + +A + +++Y Q ++ +
Sbjct: 109 ---RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165
Query: 448 YRRLLQM----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--AD 496
R+ ++ YN + + A +QY+ ++ F++A S+A +
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225
Query: 497 VWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYN------AELFNNLALCCF 548
YNI N Q E A+ +++R + + + + + + +
Sbjct: 226 TLYNIGL----------CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275
Query: 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608
+ D + ++ + A +S + YL
Sbjct: 276 KLGKIDKAHEYHSKGMAYS---QKAGDVIYLSEFEFLKSL----------YLSGPDEEAI 322
Query: 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 652
+ L + + ++A + ++AS Y
Sbjct: 323 QGFFDFLESKMLYADLEDFA-IDVAKYYHERKNFQKASAYFLKV 365
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 3e-12
Identities = 88/488 (18%), Positives = 146/488 (29%), Gaps = 170/488 (34%)
Query: 222 VRPGTLASRGGTLEQSLKTPRTAKSARPLTSQ--AARTIRLGTASMLSQPDGPFIQ---- 275
RP TL+ G+LE L P T+ A ++ +L +P F
Sbjct: 6 TRPLTLSH--GSLEHVLLVP---------TASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 276 VSRLNL-AKY-------ARDKTVAKYL---------FEYLYHHENDV---ASAMDLAVES 315
+ L K+ V ++ FE Y ND+ A+ + ++
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 316 TKACEFRDWWWKVQLGKCYFSLGLI--REAQQQFNSALNQFTDIEAFIRMIRVYIRLDQP 373
T +L K Y + ++ R ++ NSAL F + ++
Sbjct: 115 TLVK-------TKELIKNYITARIMAKRPFDKKSNSAL--FRAVGE--GNAQLV------ 157
Query: 374 IRAIDIG------------RNALDCYPNEVT-IMTEMARIFEGLNNMPMSV-KYYKLIL- 418
AI G R+ Y V ++ A L + K + L
Sbjct: 158 --AI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 419 ------------KRDATCMEAIAC--IGVNHFYNDQPEVALLFYRRLLQ-MGLYNAELFN 463
+D I+C IGV + L Y + +G EL +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGV---------IQLAHYVVTAKLLGFTPGELRS 265
Query: 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVW---YNISHVAI-------------- 506
L +SQ +V A+++A D W + AI
Sbjct: 266 YLKGATGHSQ--GLVT-----AVAIA----ETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 507 -LNALSTSVYNDQPEVA------LLFYRRLLQMGL------YNAELFNN----LALCCFY 549
+L S+ D E +L L Q + N+ L ++L
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 550 SQQYDMVVTCFERAL---SLALNENAADVWYNISHVAIITECSPFS-----FST------ 595
+VV+ ++L +L L + A + S + PFS FS
Sbjct: 375 KN---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-------PFSERKLKFSNRFLPVA 424
Query: 596 ---HTSYL 600
H+ L
Sbjct: 425 SPFHSHLL 432
Score = 42.3 bits (99), Expect = 6e-04
Identities = 63/368 (17%), Positives = 104/368 (28%), Gaps = 139/368 (37%)
Query: 309 MDLAVESTKACEFRDWW------WKVQLGKCYFS-LGLIREAQQQFN--SALNQFTDIEA 359
MDL S A +D W +K G FS L ++ N + F +
Sbjct: 1633 MDLYKTSKAA---QDVWNRADNHFKDTYG---FSILDIVIN-----NPVNLTIHFGGEKG 1681
Query: 360 FIRMIRV-YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY--KL 416
+ IR Y + I +D + +IF+ +N S + K
Sbjct: 1682 --KRIRENYSAM--------IFETIVDGK-------LKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 417 ILKRDATCMEAIACIGVNHFYNDQPEVALL-----FYRRLLQMGLYNAELFNNLALCCFY 471
+L AT QP AL + L GL A+ F
Sbjct: 1725 LL--SAT-------------QFTQP--ALTLMEKAAFEDLKSKGLIPAD-------ATF- 1759
Query: 472 SQQYDMVVTCFERA-LSL----ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY 526
A SL AL ++ + +S V ++FY
Sbjct: 1760 -------------AGHSLGEYAAL-------------ASLADVMSIE---SL--VEVVFY 1788
Query: 527 R-RLLQMGLYNAELFN-NLALCCFYSQQYDMVVTCFERALSLALNENAAD----VW---Y 577
R +Q+ + EL N + + + + + AL + V Y
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGR--VAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV--- 634
N+ + + + A+ + L+ + L
Sbjct: 1847 NVENQQYV-------------------AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 635 LEAREGHI 642
LE EGH+
Sbjct: 1888 LEEVEGHL 1895
Score = 31.9 bits (72), Expect = 0.79
Identities = 48/256 (18%), Positives = 80/256 (31%), Gaps = 64/256 (25%)
Query: 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNA--LS-TSVYNDQPEVA 522
A SQ + F + L AAD + A L L S + +V
Sbjct: 25 ASFFIASQLQE----QFNKILPEPTEGFAAD--DEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 523 LLFYRRLLQMGLYNAE---LFNN----LALCCFYSQQYDM-----VVTCFERALSL---- 566
+ ++L + L E L N LA + ++ + A +
Sbjct: 79 Q--FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 567 -------ALNENAADVWYNISHVAI-----ITECSPFS-----FSTHTSYL--FIQGISD 607
AL + + VAI T+ F + T+ + I+ ++
Sbjct: 137 FDKKSNSALFRAVGEGNAQL--VAIFGGQGNTD-DYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 608 TRLAIQCLHLALSIDS--SHGLSQNNLAVLEAREGHIERAST-YLQAAAASSPYLYET-- 662
T L+ + + L + + GL N L LE YL + S P +
Sbjct: 194 T-LS-ELIRTTLDAEKVFTQGL--NILEWLENPS---NTPDKDYLLSIPISCPLIGVIQL 246
Query: 663 -HYNQAVISNLVSVIP 677
HY V + L+ P
Sbjct: 247 AHY--VVTAKLLGFTP 260
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 64.9 bits (158), Expect = 4e-11
Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 7/174 (4%)
Query: 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACI 431
R + R A+ P + +A G+ + + L EA+A +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
G + + A + ++ + + L + Q + + RA L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQLL 121
Query: 492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
+ +LN +V R + G+ E F L+
Sbjct: 122 PEEPYITAQ-----LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
Score = 60.2 bits (146), Expect = 1e-09
Identities = 19/170 (11%), Positives = 44/170 (25%), Gaps = 11/170 (6%)
Query: 406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465
+ P + + ++ A + + +R L + + E L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF 525
+ Q++ ++A + + H L Q E A
Sbjct: 64 GRVRWTQQRHAEAAVLLQQAS--DAAPEHPGIALWLGHA--LEDA------GQAEAAAAA 113
Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 575
Y R Q+ + L + + + + A+ + V
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ-VRAAVAQGVGAV 162
Score = 57.9 bits (140), Expect = 7e-09
Identities = 16/178 (8%), Positives = 33/178 (18%), Gaps = 31/178 (17%)
Query: 474 QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533
+ A+ W ++ +A + +R L +
Sbjct: 4 DGPRELLQLRAAV--RHRPQDFVAWLMLA-----DAELGM---GDTTAGEMAVQRGLALH 53
Query: 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593
+ E L + Q++ ++A + + H
Sbjct: 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQA--SDAAPEHPGIALWLGHA----------- 100
Query: 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651
L G A A + L R
Sbjct: 101 ------LEDAG--QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
Score = 55.6 bits (134), Expect = 3e-08
Identities = 20/148 (13%), Positives = 29/148 (19%), Gaps = 21/148 (14%)
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
LL R ++ + + LA +R L AL+ +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVA 61
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
+ V A L A H L
Sbjct: 62 RLGRV-------------------RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE 102
Query: 638 REGHIERASTYLQAAAASSPYLYETHYN 665
G E A+ A P
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQ 130
Score = 51.0 bits (122), Expect = 9e-07
Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 2/157 (1%)
Query: 342 EAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI 400
Q +A+ D A++ + + + + L +P + + R+
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 401 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 460
+ + +G Q E A Y R Q+
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 497
+ L + + + + A+ + V
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQ-VRAAVAQGVGAV 162
Score = 44.1 bits (104), Expect = 1e-04
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 21/118 (17%)
Query: 552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611
+ A+ W ++ G+ DT
Sbjct: 4 DGPRELLQLRAAV--RHRPQDFVAWLMLADAE-------------------LGMGDTTAG 42
Query: 612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ L++ H + L + + A+ LQ A+ ++P
Sbjct: 43 EMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 64.6 bits (157), Expect = 4e-11
Identities = 30/247 (12%), Positives = 73/247 (29%), Gaps = 33/247 (13%)
Query: 410 SVKYYKLILKRDATCMEAIACIGVN-HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468
+++ + +L +A+ G + D A + + +++ E +N L
Sbjct: 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146
Query: 469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AILNALSTSVYNDQPEVALLFYR 527
+ TCF AL+ N N+S V L S ++ ++ +
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 528 RLLQMGLYNAELFNNLALCCFYS--------QQYDMVVTCFERALSL-ALNENAADVWYN 578
+QM + + + L + ++ + +A + + D+ N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263
Query: 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638
+ + + A++ A ++D + Q L
Sbjct: 264 RATL-----------------HKYEE--SYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304
Query: 639 EGHIERA 645
+
Sbjct: 305 LSRLTSL 311
Score = 61.6 bits (149), Expect = 4e-10
Identities = 36/261 (13%), Positives = 65/261 (24%), Gaps = 45/261 (17%)
Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM-VVTCFER 484
++ E L +L A+ + Y +
Sbjct: 69 SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128
Query: 485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNN 542
A+ L + W + V Y + A + L N N
Sbjct: 129 AVKL--EPELVEAWNQLGEV----------YWKKGDVTSAHTCFSGALTHCK-NKVSLQN 175
Query: 543 LALCC---------FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593
L++ +S+ V + A+ + + + WY + +
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGN------------ 221
Query: 594 STHTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQ---NNLAVLEAREGHIERASTY 648
+ S F G + A+ A +D + N A L E A
Sbjct: 222 -AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280
Query: 649 LQAAAASSPYLYETHYNQAVI 669
AAA P E + +
Sbjct: 281 FSQAAALDPAWPEPQQREQQL 301
Score = 47.7 bits (113), Expect = 8e-06
Identities = 20/253 (7%), Positives = 69/253 (27%), Gaps = 27/253 (10%)
Query: 342 EAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIR-AIDIGRNALDCYPNEVTIMTEMAR 399
+ QQ L +A + + A + A+ P V ++
Sbjct: 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145
Query: 400 IFEGLNNMPMSVKYYK--LILKRDATCMEAIACI------GVNHFYNDQPEVALLFYRRL 451
++ ++ + + L ++ ++ ++ + ++ ++ +
Sbjct: 146 VYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205
Query: 452 LQMGLYNAELFNNLALCCFYS--------QQYDMVVTCFERALSL-ALNENAADVWYNIS 502
+QM + + + L + ++ + +A + + D+ N +
Sbjct: 206 VQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265
Query: 503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 562
Y + AL + + + E + + ++ +
Sbjct: 266 -----TLHK---YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317
Query: 563 ALSLALNENAADV 575
L +
Sbjct: 318 TKPKKLQSMLGSL 330
Score = 33.8 bits (77), Expect = 0.20
Identities = 20/189 (10%), Positives = 47/189 (24%), Gaps = 20/189 (10%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRN--ALDC 386
QLG+ Y+ G + A F+ AL + + + V +L ++
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 387 Y-------PNE--------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAI 428
+ ++ + ++ Y K D +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
H Y + AL + + + E + + ++ +
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPK 321
Query: 489 ALNENAADV 497
L +
Sbjct: 322 KLQSMLGSL 330
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 64.8 bits (157), Expect = 5e-11
Identities = 30/193 (15%), Positives = 72/193 (37%), Gaps = 10/193 (5%)
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
P + +A I N+ +V+ Y+ L+ A + + + + AL+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507
Y+ +++ A+ ++N+ Q + C+ RA + +N AD N++ +
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA--IQINPAFADAHSNLASI--H 121
Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
A+ YR L++ + + NLA C + ++ +S+
Sbjct: 122 KDS------GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Query: 568 LNENAADVWYNIS 580
++ + ++
Sbjct: 176 ADQLEKNRLPSVH 188
Score = 62.1 bits (150), Expect = 4e-10
Identities = 44/277 (15%), Positives = 96/277 (34%), Gaps = 14/277 (5%)
Query: 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415
++ + + A+ + R AL+ +P + +A + + + ++ +YK
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 416 LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 475
++ T +A + +G + AL Y R +Q+ A+ +NLA S
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535
+ + A L L + D + N++H L + D+ ++L+ +
Sbjct: 128 PEAIASYRTA--LKLKPDFPDAYCNLAHC--LQIVCDWTDYDE------RMKKLVSIVAD 177
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
E ++ +S Y + F +A++ + I+ + P
Sbjct: 178 QLEKNRLPSVHPHHSMLYPL-SHGFRKAIA---ERHGNLCLDKINVLHKPPYEHPKDLKL 233
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL 632
L + +S HL SI H + +
Sbjct: 234 SDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEV 270
Score = 61.0 bits (147), Expect = 7e-10
Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 21/152 (13%)
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
E A+ YR+ L++ A +NLA + + ++ A+ ++ AD +
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
N+ + ++ + D + A+QC A+ I+ + + +NLA +
Sbjct: 82 NMGNT-------------------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122
Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAVI 669
G+I A + A P + + N A
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Score = 58.7 bits (141), Expect = 4e-09
Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 1/174 (0%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
L G I EA + + AL F A + V + + A+ + A+ P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
+ M + + ++ +++ Y ++ + +A + + H + A+ Y
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 502
R L++ + + NLA C + ++ +S+ ++ + ++
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
Score = 57.9 bits (139), Expect = 8e-09
Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 31/211 (14%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+A+ NNLA + V + +AL + A N++ + L
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLA-----SVLQQ---QG 57
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ + AL+ Y+ +++ A+ ++N+ Q + C+ RA+ +N AD
Sbjct: 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI--QINPAFADAHS 115
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
N++ + G + AI AL + + NLA
Sbjct: 116 NLASI-----------------HKDSG--NIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156
Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAV 668
++ + E + +V
Sbjct: 157 IVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187
Score = 52.1 bits (124), Expect = 4e-07
Identities = 32/286 (11%), Positives = 78/286 (27%), Gaps = 5/286 (1%)
Query: 318 ACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRA 376
L G ++EA + A+ T +A+ M + A
Sbjct: 37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96
Query: 377 IDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436
+ A+ P + +A I + N+P ++ Y+ LK +A +
Sbjct: 97 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156
Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
++L+ + E ++ +S Y + F +A++ D
Sbjct: 157 IVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPL-SHGFRKAIAERHGNLCLD 215
Query: 497 VWYNISHVAILNALSTSVYNDQPEVALLFY-RRLLQMGLYNAELFNNLALCCFYSQQYDM 555
+ + + + + V + + F Y +
Sbjct: 216 KINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYAL 275
Query: 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601
+ + A+ + ++S + + + L
Sbjct: 276 --SPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILV 319
Score = 32.5 bits (73), Expect = 0.56
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
H S NNLA ++ +G+IE A + A P H N A +
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 60.2 bits (147), Expect = 2e-10
Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 27/218 (12%)
Query: 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490
+GV + + + AL + R L+ + E LA + + + + A
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--AR 68
Query: 491 NENAADVWYNISHV---AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
+ +S A E AL + ++ A L L
Sbjct: 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVY 128
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
+ D ++AL+L E+ ++ ++ + G D
Sbjct: 129 ALLGERDKAEASLKQALAL---EDTPEIRSALAEL-----------------YLSMGRLD 168
Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
A+ AL + A +G E A
Sbjct: 169 --EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204
Score = 54.1 bits (131), Expect = 2e-08
Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 43/223 (19%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+ L + + +YD +T FERA L N + Y ++ L
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERA--LKENPQDPEALYWLA--RTQLKL------G 53
Query: 518 QPEVALLFYRRLLQ-----------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
AL + L+ + L+ + ++ + A
Sbjct: 54 LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA--E 111
Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
+N A + V + G + A L AL+++ +
Sbjct: 112 RVNPRYAPLHLQRGLV-----------------YALLG--ERDKAEASLKQALALEDTP- 151
Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
++ LA L G ++ A A +P + A
Sbjct: 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194
Score = 45.2 bits (108), Expect = 2e-05
Identities = 34/242 (14%), Positives = 78/242 (32%), Gaps = 35/242 (14%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
+LG ++LG A F AL + D EA + R ++L A++ G+ +
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
P + ++ + L + K L+ +A++
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLE------QALSV----------------- 106
Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507
+ ++ A L L + D ++AL+L E+ ++ ++ +
Sbjct: 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL---EDTPEIRSALAEL--Y 161
Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
++ + + AL Y + L+ + +L A + +
Sbjct: 162 LSM------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
Query: 568 LN 569
+
Sbjct: 216 HH 217
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 61.9 bits (151), Expect = 3e-10
Identities = 40/308 (12%), Positives = 85/308 (27%), Gaps = 62/308 (20%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI-----RVYIRLDQPIRAIDIGRNA 383
G+ + G R F +A+ T+ + I Y L +A+ ++
Sbjct: 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112
Query: 384 LDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRD-------ATC---- 424
L E + + + + + L L R
Sbjct: 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172
Query: 425 ----------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYN----AELFNNLALC 468
+ + A+ FY+ L++ L + NL
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT 232
Query: 469 CFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYNDQ--PEVALL 524
+ + + + L +A + AA + L + E A
Sbjct: 233 YYLLGDFQAAIEHHQERLRIAREFGDRAA-------ERRANSNLGN-SHIFLGQFEDAAE 284
Query: 525 FYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--AD 574
Y+R L + L A+ +L +++ + R L++A L + A
Sbjct: 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344
Query: 575 VWYNISHV 582
+++ +
Sbjct: 345 ACWSLGNA 352
Score = 61.9 bits (151), Expect = 3e-10
Identities = 51/375 (13%), Positives = 107/375 (28%), Gaps = 79/375 (21%)
Query: 334 YFSLGLIREAQQQFNSALNQFTDIE-------AFIRMIRVYIRLDQPIRAIDIGRNALDC 386
LG + Q + + + + A+
Sbjct: 18 SLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQA 77
Query: 387 Y----PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDAT--CMEAIAC--IGVNHF 436
I +++ + L + +++Y+K L L + EA + +G
Sbjct: 78 GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137
Query: 437 YNDQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDM----------VVT 480
+ + A + R L + L + NL ++ V
Sbjct: 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197
Query: 481 CFERAL-----SLALNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM- 532
RA+ +L L + D + L + Y + A+ ++ L++
Sbjct: 198 ALTRAVEFYQENLKLMRDLGD---RGAQGRACGNLG-NTYYLLGDFQAAIEHHQERLRIA 253
Query: 533 -GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVA 583
+ +NL + Q++ ++R L+LA L E A Y++ +
Sbjct: 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT- 312
Query: 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEA 637
+ + AI+ + L+I G + +L +
Sbjct: 313 ----------------YTLLH--EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS 354
Query: 638 REGHIERASTYLQAA 652
G ERA Y +
Sbjct: 355 AIGGHERALKYAEQH 369
Score = 60.0 bits (146), Expect = 1e-09
Identities = 40/293 (13%), Positives = 82/293 (27%), Gaps = 64/293 (21%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIE-------AFIRMIRVYIRLDQPIRAIDIGR 381
QLG YF LG +A Q L + + + + + A
Sbjct: 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150
Query: 382 NALDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC----- 430
L +E + + ++ K A+
Sbjct: 151 RHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210
Query: 431 ------------------IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLA 466
+G ++ + A+ ++ L++ + +NL
Sbjct: 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270
Query: 467 LCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVAILNALSTSVYNDQ--PE 520
+ Q++ ++R L+LA L E A Y++ + Y
Sbjct: 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG----------NTYTLLHEFN 320
Query: 521 VALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA 567
A+ ++ R L + L + A +L ++ + E+ L LA
Sbjct: 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
Score = 58.1 bits (141), Expect = 5e-09
Identities = 38/317 (11%), Positives = 90/317 (28%), Gaps = 83/317 (26%)
Query: 390 EVTIMTEMARIFEGLNNM-----PMSVKYYKLILKR------DATCMEAIACIGVNHFYN 438
+ M+ ++ E ++++ + ++ ++ +A G
Sbjct: 2 PLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNA 61
Query: 439 DQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN--- 491
+ F++ +Q G + + +++ L FY Y+ + + L+LA +
Sbjct: 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121
Query: 492 -ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMG--LYN----AELFNN 542
A N+ + + A + R L + L + N
Sbjct: 122 RLGEAKSSGNLGN----------TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171
Query: 543 LALCCFYSQQYDMV-----------------VTCFERALSLA--LNENA--ADVWYNISH 581
L ++ V ++ L L L + N+ +
Sbjct: 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231
Query: 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSHGLSQNNLAVL 635
++ G D + AI+ L I ++ + +NL
Sbjct: 232 T-----------------YYLLG--DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272
Query: 636 EAREGHIERASTYLQAA 652
G E A+ + +
Sbjct: 273 HIFLGQFEDAAEHYKRT 289
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 62.4 bits (151), Expect = 4e-10
Identities = 27/344 (7%), Positives = 74/344 (21%), Gaps = 40/344 (11%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
S ++A + L + A I L+ R + + A
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
P++V + + L + + + AIA + + L
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
+ + + + ++ +A L + +
Sbjct: 349 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPDQVVAIASNGGKQ 406
Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
L + + L + + + + ++ +
Sbjct: 407 ALETV---------QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQT-- 455
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
L + Q + + + L A +
Sbjct: 456 HGLTPAQVVAIASHDGGK-------------------QALETVQQLLPVLCQAHGLTPDQ 496
Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
++ + + ++R L A +P +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Score = 61.2 bits (148), Expect = 9e-10
Identities = 28/344 (8%), Positives = 73/344 (21%), Gaps = 40/344 (11%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
S G ++A + L + A L+ R + + A
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
P++V + + L + + + AIA G + L
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALE-TVQRLL 415
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
+ + + + ++ + L +
Sbjct: 416 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH--GLTPAQVVAIASHDG-- 471
Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
AL + + L + + + ++ +A
Sbjct: 472 GKQAL------ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAH- 524
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
L + + Q + + + L A +
Sbjct: 525 -GLTPDQVVAIASNGGGK-------------------QALETVQRLLPVLCQAHGLTPDQ 564
Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
++ + + ++R L A + +
Sbjct: 565 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Score = 53.1 bits (127), Expect = 2e-07
Identities = 28/344 (8%), Positives = 78/344 (22%), Gaps = 39/344 (11%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
S ++A + L + A L+ + + + A
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG 491
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
P++V + + L + + + AIA G + + L
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 551
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
+ + + + ++ +A L + + ++
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTQVQVVAIAS--NIG 607
Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
AL + L + + + + ++ +A
Sbjct: 608 GKQALE------TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH- 660
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
L + + Q + + + L A +
Sbjct: 661 -GLTPDQVVAIASNGGGK-------------------QALETVQRLLPVLCQAHGLTQEQ 700
Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
++ + + ++R L A +P +
Sbjct: 701 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744
Score = 48.9 bits (116), Expect = 5e-06
Identities = 32/359 (8%), Positives = 87/359 (24%), Gaps = 36/359 (10%)
Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
S ++A + L + A L+ R + + A
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
P++V + + L + + + AIA + + L
Sbjct: 391 LTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
+ + + + ++ +A L + + ++
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH--GLTPDQVVAIAS--NIG 505
Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
AL+T + L + + + + ++ +A
Sbjct: 506 GKQALATV------QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559
Query: 566 LALNENAADVWYNISHV---------AIITEC-----SPFSFSTHTSYLFI-QGISDTRL 610
L ++ A + + C + S + Q + +
Sbjct: 560 LTPDQVVA--IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQR 617
Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ L A + + ++ + + ++R L A +P +
Sbjct: 618 LLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Score = 46.9 bits (111), Expect = 2e-05
Identities = 27/331 (8%), Positives = 74/331 (22%), Gaps = 32/331 (9%)
Query: 336 SLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM 394
+L ++ A D + A L+ R + + P +V +
Sbjct: 407 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAI 466
Query: 395 TEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454
+ L + + + AIA + L + +
Sbjct: 467 ASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL 526
Query: 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514
+ + ++ +A L ++ A + + AL
Sbjct: 527 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA--IAS--NGGGKQAL---- 578
Query: 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574
+ + L + + + + ++ +A L
Sbjct: 579 --ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH--GLTPAQVV 634
Query: 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634
+ Q + + + L A + ++ +
Sbjct: 635 AIASHDGGK-------------------QALETVQRLLPVLCQAHGLTPDQVVAIASNGG 675
Query: 635 LEAREGHIERASTYLQAAAASSPYLYETHYN 665
+ ++R L A + +
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Score = 46.9 bits (111), Expect = 2e-05
Identities = 17/231 (7%), Positives = 51/231 (22%), Gaps = 31/231 (13%)
Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
+ L + + + + ++ +A L + +
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH--GLPPDQVVAIAS- 265
Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
++ AL T + L + + + + ++
Sbjct: 266 -NIGGKQALETV------QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC 318
Query: 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
+A L + + Q + + + L A +
Sbjct: 319 QAH--GLTPDQVVAIASHDGGK-------------------QALETVQRLLPVLCQAHGL 357
Query: 622 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672
++ + + ++R L A +P + L
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL 408
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 60.1 bits (145), Expect = 5e-10
Identities = 29/205 (14%), Positives = 67/205 (32%), Gaps = 6/205 (2%)
Query: 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSAL 351
+ EYL H A +L E +++ + + + + YF A + L
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR----TL 124
Query: 352 NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI--FEGLNNMPM 409
+Q +E +++ ++LD+ A + D + A + G +
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
+ ++ + + + + + H + E A + L + E NL +
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244
Query: 470 FYSQQYDMVVTCFERALSLALNENA 494
+ + V + L A +
Sbjct: 245 QHLGKPPEVTNRYLSQLKDAHRSHP 269
Score = 51.7 bits (123), Expect = 3e-07
Identities = 36/245 (14%), Positives = 61/245 (24%), Gaps = 45/245 (18%)
Query: 439 DQPEVALLFYRRLLQMGLY-------------NAELFNNLALCCFYSQQYDMVVTCFERA 485
E + YR L Y + A + D +V +R
Sbjct: 32 RDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91
Query: 486 LSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
+S +++ + + Y+ P+ AL + + E
Sbjct: 92 MSRSVDVTNTTFLLMAASIYF--------YDQNPDAALRTLHQGD-----SLECMAMTVQ 138
Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605
+ D+ ++ +E+A + V G
Sbjct: 139 ILLKLDRLDLARKELKKMQ--DQDEDATLTQLATAWV-----------------SLAAGG 179
Query: 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 665
+ A S L N A +G E A LQ A ET N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 666 QAVIS 670
V+S
Sbjct: 240 LVVLS 244
Score = 45.1 bits (106), Expect = 4e-05
Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 21/249 (8%)
Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNAL--D 385
V L + Y + + + +++A + + +
Sbjct: 38 VFLYRAYLAQRKYGVVLDEIKP--SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
T + A I+ N +++ +E +A D+ ++A
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTL-----HQGDSLECMAMTVQILLKLDRLDLAR 150
Query: 446 LFYRRLLQMGLYNAELFNNLALCCFY--SQQYDMVVTCFERALSLALNENAADVWYNISH 503
+++ A ++ F+ + +
Sbjct: 151 KELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAA 208
Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563
+ + E A + L + E NL + + + V +
Sbjct: 209 CHMAQ--------GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
Query: 564 LSLALNENA 572
L A +
Sbjct: 261 LKDAHRSHP 269
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 60.4 bits (147), Expect = 9e-10
Identities = 55/390 (14%), Positives = 107/390 (27%), Gaps = 91/390 (23%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI-----RVYIRLDQPIRAIDIGRNA 383
G+ G R F +A+ T+ + I Y L +A++ +
Sbjct: 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73
Query: 384 LDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRD-------------- 421
L E + + L N ++ + L + R+
Sbjct: 74 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133
Query: 422 ----------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYN----AELFNNL 465
C D + A+ FY L + L + F NL
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL 193
Query: 466 ALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYNDQ--PEV 521
+ + V E+ L +A + AA + L + Y E
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------ERRAYSNLG-NAYIFLGEFET 245
Query: 522 ALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA--- 572
A +Y++ L + L + A+ +L Q Y+ + + L++A N
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305
Query: 573 -ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSH 625
+++ + G + A+ L I S
Sbjct: 306 EGRACWSLGNA-----------------YTALG--NHDQAMHFAEKHLEISREVGDKSGE 346
Query: 626 GLSQNNLAVLEAREGHI-ERASTYLQAAAA 654
++ NL+ L+ G ++ +
Sbjct: 347 LTARLNLSDLQMVLGLSYSTNNSIMSENTE 376
Score = 51.9 bits (125), Expect = 4e-07
Identities = 35/248 (14%), Positives = 69/248 (27%), Gaps = 54/248 (21%)
Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQY 475
+A+C+ +A G + + F+ +Q+G + + +++ L FY Y
Sbjct: 5 MEASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535
+ L+LA DQ
Sbjct: 64 AKALEYHHHDLTLART-----------------------IGDQLGE-------------- 86
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHV-AIITECSP 590
A+ NL +D + C +R L ++ A YN+ +V +
Sbjct: 87 -AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145
Query: 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGHIER 644
+ + A+ LS+ ++ G + NL G+
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205
Query: 645 ASTYLQAA 652
A +
Sbjct: 206 AVIAHEQR 213
Score = 43.1 bits (102), Expect = 2e-04
Identities = 36/266 (13%), Positives = 81/266 (30%), Gaps = 48/266 (18%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN 389
LG Y + G + +A + Y + + D
Sbjct: 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE------NLSLVTALGD-RAA 185
Query: 390 EVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIA--CIGVNHFYNDQPEV 443
+ + L N +V ++ L++ ++ E A +G + + + E
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245
Query: 444 ALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA--- 494
A +Y++ L + L + A+ +L Q Y+ + + L++A N
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305
Query: 495 -ADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM------------GLYN-AE 538
+++ + Y + A+ F + L++ N ++
Sbjct: 306 EGRACWSLG----------NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355
Query: 539 LFNNLALCCFYSQQYDMVVTCFERAL 564
L L L + T + +L
Sbjct: 356 LQMVLGLSYSTNNSIMSENTEIDSSL 381
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 57.5 bits (140), Expect = 9e-10
Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 40/200 (20%)
Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516
+ + + + +Y V E+ + DV ++ Y
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLG----------IAYV 53
Query: 517 DQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574
+ R L N ++ L L Q+YD+ V + N +
Sbjct: 54 KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFN 111
Query: 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNL 632
V + + L G R AI +AL + + G +
Sbjct: 112 VRFRLGVA-----------------LDNLG----RFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 633 AVLEAREGHIERA-STYLQA 651
A + G E A + +A
Sbjct: 151 AFSYEQMGRHEEALPHFKKA 170
Score = 48.2 bits (116), Expect = 1e-06
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 12/136 (8%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
R L N ++ L L Q+YD+ V + N +V + +
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGV 118
Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563
L+ L + + A+ ++ L + ++ +A +++ + F++A
Sbjct: 119 A--LDNL------GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Query: 564 LSLALNENAADVWYNI 579
L+E A+ +
Sbjct: 171 NE--LDEGASVELALV 184
Score = 45.5 bits (109), Expect = 1e-05
Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 21/135 (15%)
Query: 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS 594
+ + + + +Y V E+ + DV ++
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIA------------ 51
Query: 595 THTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654
G D + L +L+ + L + + + A L A
Sbjct: 52 -----YVKTGAVD--RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 655 SSPYLYETHYNQAVI 669
++P + + V
Sbjct: 105 ANPINFNVRFRLGVA 119
Score = 43.6 bits (104), Expect = 5e-05
Identities = 18/182 (9%), Positives = 46/182 (25%), Gaps = 29/182 (15%)
Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
+ ++ + + + A++ ++ ++ ++ +L +
Sbjct: 1 MGNDDIRQVYYRDKG--ISHAKA------GRYSQAVMLLEQVYDADAFDVDVALHLGIAY 52
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
+ D ER+L+ + V +
Sbjct: 53 VKTGAVDRGTELLERSLAD--APDNVKVATVLGLT-----------------YVQVQ--K 91
Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
LA+ L + + + L V G + A + A P + H A
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Query: 668 VI 669
Sbjct: 152 FS 153
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 57.6 bits (140), Expect = 2e-09
Identities = 31/262 (11%), Positives = 61/262 (23%), Gaps = 49/262 (18%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
G + Q + A+ Y + ++ + NN A + +Y+ ++ A+
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQG 68
Query: 492 ENAADVWYNISHV----------------AI-LNALSTSVYN--------DQPEVALLFY 526
+ IS I S + + E L
Sbjct: 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA 128
Query: 527 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIIT 586
+ AE F + V + + A + N +
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--KRAPEDARGYSNRAAA---- 182
Query: 587 ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 646
L AI + A+ D + + A + A
Sbjct: 183 -------------LAKLM--SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227
Query: 647 TYLQAAAASSPYLYETHYNQAV 668
L AA + + +
Sbjct: 228 ETLDAARTKDAEVNNGSSAREI 249
Score = 56.0 bits (136), Expect = 9e-09
Identities = 32/313 (10%), Positives = 73/313 (23%), Gaps = 80/313 (25%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYI---RLDQPI----RAIDIGR 381
G ++ EA + +N A DI + I A++ GR
Sbjct: 10 AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69
Query: 382 NALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP 441
Y +++ F + N + K + I +Y
Sbjct: 70 EMRADYKV-------ISKSFARIGNAYHKLGDLK----------KTIE------YYQKSL 106
Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
+ A + + + E + N A+
Sbjct: 107 T-------------------EHRTADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLE 145
Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
A+ Y +++ +A ++N A + +
Sbjct: 146 G-----KEYF---TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
+A+ + N + + + A++ L A +
Sbjct: 198 KAIE--KDPNFVRAYIRKATA-----------------QIAVK--EYASALETLDAARTK 236
Query: 622 DSSHGLSQNNLAV 634
D+ + +
Sbjct: 237 DAEVNNGSSAREI 249
Score = 46.0 bits (110), Expect = 2e-05
Identities = 14/212 (6%), Positives = 53/212 (25%), Gaps = 33/212 (15%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
A+ + ++Q+D + + +A L+++ N + A
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWE--LHKDIT-YLNNRA--AAEYEK------G 52
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ E A+ ++ G + ++ + ++ + + + +
Sbjct: 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT--IEYYQKSLT-EH 109
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
+ + + + + ++ ++
Sbjct: 110 RTADI-------------------LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150
Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAVI 669
+ A +P + N+A
Sbjct: 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 55.2 bits (133), Expect = 3e-09
Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 10/139 (7%)
Query: 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453
+TE I + + S K I M+ I + + + E A +F+R L
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513
YN + LA +Q+ + A AL +N ++ L
Sbjct: 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA--FALGKNDYTPVFHTGQC--QLRL--- 117
Query: 514 VYNDQPEVALLFYRRLLQM 532
P A + ++Q
Sbjct: 118 ---KAPLKAKECFELVIQH 133
Score = 48.6 bits (116), Expect = 5e-07
Identities = 13/116 (11%), Positives = 37/116 (31%)
Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
++ + + + A F + + +++ + D ++ I + + +Q
Sbjct: 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85
Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
+ A Y +G + + C + CFE + + +E
Sbjct: 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKI 141
Score = 48.6 bits (116), Expect = 6e-07
Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 29/150 (19%)
Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
A+ ++ D Y+ ++ + + + A +F+R L YN + LA
Sbjct: 29 NAIPDDMMDDIYSYAY----DFYNKGRIEE----AEVFFRFLCIYDFYNVDYIMGLAAIY 80
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
+Q+ + A AL +N ++
Sbjct: 81 QIKEQFQQAADLYAVA--FALGKNDYTPVFHTGQC-----------------QLRLK--A 119
Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
A +C L + + L + L+A
Sbjct: 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
Score = 42.9 bits (101), Expect = 6e-05
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
+++ G I EA+ F F +++ + + +Y +Q +A D+ A
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
N+ T + + L + + ++L+++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
Score = 39.8 bits (93), Expect = 7e-04
Identities = 10/147 (6%), Positives = 35/147 (23%), Gaps = 21/147 (14%)
Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAII 585
+ + + + + A + + + F + D ++ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC--IYDFYNVDYIMGLAAI--- 79
Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
I+ + A +A ++ + + + R +A
Sbjct: 80 --------------YQIKE--QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 646 STYLQAAAASSPYLYETHYNQAVISNL 672
+ S Q+ + +
Sbjct: 124 KECFELVIQHSNDEKLKIKAQSYLDAI 150
Score = 34.8 bits (80), Expect = 0.034
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN-QFT 355
Y ++++ + A +F + + + L Y ++A + A
Sbjct: 44 YDFYNKGRIEEAEVFF-RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102
Query: 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390
D + +RL P++A + + +E
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
Score = 30.9 bits (70), Expect = 0.60
Identities = 10/99 (10%), Positives = 24/99 (24%)
Query: 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415
++ + + A R V + +A I++ + Y
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94
Query: 416 LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454
+ + G P A + ++Q
Sbjct: 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Score = 29.4 bits (66), Expect = 2.3
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIR 362
G+C L +A++ F + D + I+
Sbjct: 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 54.7 bits (132), Expect = 4e-09
Identities = 14/125 (11%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473
++ +E + +G N + + + A ++ L + Y+A F L C
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 474 QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533
Y+ + + ++ N ++ + L + A + +
Sbjct: 67 LYEQALQSYSYG--ALMDINEPRFPFHAAEC--HLQL------GDLDGAESGFYSARALA 116
Query: 534 LYNAE 538
Sbjct: 117 AAQPA 121
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 33/161 (20%)
Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
L+E+ + Y + N ++D A ++ L + Y+A F L C
Sbjct: 11 RGLSEDTLEQLYALGF----NQYQAGKWDD----AQKIFQALCMLDHYDARYFLGLGACR 62
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
Y+ + + ++ N ++ + G D
Sbjct: 63 QSLGLYEQALQSYSYG--ALMDINEPRFPFHAAEC-----------------HLQLG--D 101
Query: 608 TRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIER 644
A + A ++ ++ L+ A+LEA +R
Sbjct: 102 LDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
Score = 49.0 bits (117), Expect = 3e-07
Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 3/132 (2%)
Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
+ + + + + K ++ + D +G
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-LNENAADVWY 499
E AL Y M + + A C D + F A +LA +
Sbjct: 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127
Query: 500 NISHVAILNALS 511
A+L A++
Sbjct: 128 RAG--AMLEAVT 137
Score = 42.8 bits (101), Expect = 5e-05
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 21/132 (15%)
Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAII 585
L + E L + + ++D F+ L+ A + +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC--MLDHYDARYFLGLGAC--- 61
Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
Q + A+Q +D + + A + G ++ A
Sbjct: 62 ----------------RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105
Query: 646 STYLQAAAASSP 657
+ +A A +
Sbjct: 106 ESGFYSARALAA 117
Score = 42.0 bits (99), Expect = 8e-05
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
LG + G +AQ+ F + D F+ + L +A+
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
NE A L ++ + +
Sbjct: 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116
Score = 33.2 bits (76), Expect = 0.10
Identities = 12/104 (11%), Positives = 22/104 (21%), Gaps = 19/104 (18%)
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
L+E+ + Y + + G A + +D
Sbjct: 11 RGLSEDTLEQLYALGF-----------------NQYQAG--KWDDAQKIFQALCMLDHYD 51
Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
L G E+A A ++ A
Sbjct: 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Score = 28.6 bits (64), Expect = 3.2
Identities = 7/55 (12%), Positives = 12/55 (21%)
Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
L + + L + + G + A QA Y
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGAC 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 56.3 bits (136), Expect = 4e-09
Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 15/144 (10%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
GV + AL + + ++ + N+ + F R+++ +
Sbjct: 13 GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--D 67
Query: 492 ENAADVWYNISHV---------AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN 542
++ A ++ + AI L ++ + + + LQ L+ E+ N
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAI-KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 126
Query: 543 LALCCFYSQQYDMVVTCFERALSL 566
+A +++ A S+
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSM 150
Score = 48.6 bits (116), Expect = 1e-06
Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 46/195 (23%)
Query: 454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513
M L A N + + + + F + + + + +NI + L
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSA-----VQDPHSRICFNIG--CMYTIL--- 50
Query: 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS-------- 565
A + R + + A + + + +++YD+ + + AL
Sbjct: 51 ---KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
Query: 566 ------LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619
L A +V YNI+ + + + + A + L LA
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFM-----------------YAKKE--EWKKAEEQLALAT 148
Query: 620 SIDSSHGLSQNNLAV 634
S+ S S+ + A+
Sbjct: 149 SMKSEPRHSKIDKAM 163
Score = 43.9 bits (104), Expect = 5e-05
Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 334 YFSLGLIREAQQQFNSALNQFTDI-----EAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
++ G++ ++ + AL+ F+ + + +Y L A +++
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
+ + ++ +++K K EA+ + N + +
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLK----------EALIQLRGNQ--------LIDYK 110
Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
LQ L+ E+ N+A +++ A S+
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Score = 37.8 bits (88), Expect = 0.006
Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 24/135 (17%)
Query: 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591
M L A N + + + + F + + + + +NI +
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSA-----VQDPHSRICFNIGCM--------- 46
Query: 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651
I + A + +++ D ++ +L + + A L+
Sbjct: 47 --------YTILK--NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96
Query: 652 AAASSPYLYETHYNQ 666
A Y
Sbjct: 97 ALIQLRGNQLIDYKI 111
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 55.3 bits (134), Expect = 2e-08
Identities = 45/288 (15%), Positives = 84/288 (29%), Gaps = 57/288 (19%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIE-------AFIRMIRVYIRLDQPIRAIDIGR 381
QLG YF L +A + + L I A + L AI +
Sbjct: 48 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 107
Query: 382 NALDCYPNEVTIMTEMARIFEG-------LNNMPMSVKYYKLILKRDATCMEAIACIGVN 434
L +++R L N+ Y+ + C
Sbjct: 108 RHL-----------DISRELNDKVGEARALYNLGNV--YHAK--GKSFGCPGPQDTGEFP 152
Query: 435 HFYNDQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSL 488
+ + A+ Y L + L + F NL + + V E+ L +
Sbjct: 153 EDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212
Query: 489 A--LNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMG--LYN----AE 538
A + AA + L + Y E A +Y++ L + L + A+
Sbjct: 213 AKEFGDKAA-------ERRAYSNLG-NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264
Query: 539 LFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHV 582
+L Q Y+ + + L++A +++ +
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312
Score = 50.3 bits (121), Expect = 1e-06
Identities = 46/296 (15%), Positives = 86/296 (29%), Gaps = 80/296 (27%)
Query: 422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDM 477
A+C+ +A G + + F+ +Q+G + + +++ L FY Y
Sbjct: 3 ASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61
Query: 478 VVTCFERALSLAL----NENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQ 531
+ L+LA A N+ + + A++ +R L
Sbjct: 62 ALEYHHHDLTLARTIGDQLGEAKASGNLG----------NTLKVLGNFDEAIVCCQRHLD 111
Query: 532 M--GLYN----AELFNNLALC--------------------CFYSQQYDMVVTCFERALS 565
+ L + A NL V +E LS
Sbjct: 112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171
Query: 566 LA--LNENA--ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
L L + A + N+ + ++ G + R A+ L I
Sbjct: 172 LVTALGDRAAQGRAFGNLGNT-----------------HYLLG--NFRDAVIAHEQRLLI 212
Query: 622 ------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671
++ + +NL G E AS Y + L ++AV +
Sbjct: 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL----LARQLKDRAVEAQ 264
Score = 50.3 bits (121), Expect = 1e-06
Identities = 36/264 (13%), Positives = 80/264 (30%), Gaps = 45/264 (17%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGR--NALDCY 387
LG LG EA L+ ++ + R ++G +A
Sbjct: 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY---------NLGNVYHAKGKS 139
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDAT--CMEAIAC--IGVNHFYNDQP 441
+ N + +V Y+ L L + A +G H+
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199
Query: 442 EVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN---- 491
A++ + + L + + ++NL + +++ +++ L LA
Sbjct: 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259
Query: 492 ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMG--LYN----AELFNNL 543
A Y++ + Y E A+ ++ + L + L + +L
Sbjct: 260 AVEAQSCYSLG----------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 544 ALCCFYSQQYDMVVTCFERALSLA 567
+D + E+ L ++
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEIS 333
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 51.1 bits (122), Expect = 7e-08
Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473
++ + + +E + + N + + E A ++ L + Y++ F L C
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 474 QYDMVVTCFERALSLALNENAADVWYNISHV 504
QYD+ + + ++ ++ +
Sbjct: 70 QYDLAIHSYSYG--AVMDIXEPRFPFHAAEC 98
Score = 47.6 bits (113), Expect = 1e-06
Identities = 11/109 (10%), Positives = 28/109 (25%)
Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
+ + + + +A + ++ + D +G Q
Sbjct: 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 489
++A+ Y M + + A C + + A L
Sbjct: 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119
Score = 45.7 bits (108), Expect = 5e-06
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
++ + + Y+++ N + Y D A ++ L + Y++ F L C
Sbjct: 14 NEISSDTLEQLYSLAF----NQYQSGXYED----AHXVFQALCVLDHYDSRFFLGLGACR 65
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582
QYD+ + + ++ ++ +
Sbjct: 66 QAMGQYDLAIHSYSYG--AVMDIXEPRFPFHAAEC 98
Score = 38.0 bits (88), Expect = 0.003
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 21/132 (15%)
Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAII 585
L ++ E +LA + S Y+ F+ L+ + + +
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQAL--CVLDHYDSRFFLGLGAC--- 64
Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
G LAI +D + A + G + A
Sbjct: 65 --------------RQAMG--QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108
Query: 646 STYLQAAAASSP 657
+ L A
Sbjct: 109 ESGLFLAQELIA 120
Score = 28.0 bits (62), Expect = 6.7
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
LG C ++G A ++ + ++ + A A +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 389 NEVTIMTEMARIFEGLN 405
N R+ L
Sbjct: 121 NXPEFXELSTRVSSMLE 137
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 47.4 bits (114), Expect = 1e-06
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
AE + NL + YD + +++AL L+ +A+ WYN+ NA
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLG-----NAYY---KQGD 50
Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
+ A+ +Y++ L++ +AE + NL + YD + +++AL L+ +A+ WYN
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYN 108
Query: 579 I 579
+
Sbjct: 109 L 109
Score = 41.2 bits (98), Expect = 2e-04
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
A+ +Y++ L++ +AE + NL + YD + +++AL L + +A+ WYN+
Sbjct: 20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG- 76
Query: 504 VAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
+ Y Q + A+ +Y++ L++ +AE + NL + YD + ++
Sbjct: 77 ---------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 562 RALSL 566
+AL L
Sbjct: 128 KALEL 132
Score = 38.1 bits (90), Expect = 0.002
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596
AE + NL + YD + +++AL L + +A+ WYN+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA-------------- 44
Query: 597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 656
+ QG D AI+ AL +D + NL ++G + A Y Q A
Sbjct: 45 ---YYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 657 PYLYETHYNQAVI 669
P E YN
Sbjct: 100 PRSAEAWYNLGNA 112
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 47.9 bits (115), Expect = 1e-06
Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 28/155 (18%)
Query: 431 IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFER 484
+G H+ A++ + + L + + ++NL + +++ +++
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 485 ALSLAL----NENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM--GLYN 536
L LA A Y++ + Y E A+ ++ + L + L +
Sbjct: 75 TLLLARQLKDRAVEAQSCYSLG----------NTYTLLQDYEKAIDYHLKHLAIAQELKD 124
Query: 537 ----AELFNNLALCCFYSQQYDMVVTCFERALSLA 567
+L +D + E+ L ++
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
Score = 45.6 bits (109), Expect = 8e-06
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVAILNALSTSV 514
F NL + + V E+ L +A + A + N+ +
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG----------NA 58
Query: 515 YNDQ--PEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSL 566
Y E A +Y++ L + L + A+ +L Q Y+ + + L++
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 567 A 567
A
Sbjct: 119 A 119
Score = 37.1 bits (87), Expect = 0.006
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 28/163 (17%)
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIAC--IGVNHFYNDQP 441
+ + L N +V ++ L++ ++ E IA +G + + +
Sbjct: 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF 65
Query: 442 EVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN---- 491
E A +Y++ L + L + A+ +L Q Y+ + + L++A
Sbjct: 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125
Query: 492 ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM 532
+++ + Y + A+ F + L++
Sbjct: 126 IGEGRACWSLG----------NAYTALGNHDQAMHFAEKHLEI 158
Score = 34.4 bits (80), Expect = 0.042
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 39/172 (22%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN 389
LG ++ LG R+A L + D+ I Y N
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------DKAAERI--------AYSN 54
Query: 390 EVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIAC--IGVNHFYNDQPEV 443
+ + L + +YYK L+L R +EA +C +G + E
Sbjct: 55 -------LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 107
Query: 444 ALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA 489
A+ ++ + L + L + +L +D + E+ L ++
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 47.6 bits (113), Expect = 2e-06
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 18/140 (12%)
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
PE L + ++ N+E + L + Y + + +AL L A+++
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL--QLRGENAELYA 82
Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
++ V + T + AL++DS+ + LA
Sbjct: 83 ALATV----------------LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 638 REGHIERASTYLQAAAASSP 657
+ + +A Q +
Sbjct: 127 MQANYAQAIELWQKVMDLNS 146
Score = 39.1 bits (91), Expect = 0.002
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 473 QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532
Q + + + + N ++ W + + + + +LL YR+ LQ+
Sbjct: 24 QNPEAQLQALQDKI--RANPQNSEQWALLGEYYL--------WQNDYSNSLLAYRQALQL 73
Query: 533 GLYNAELFNNLALCCFYSQQYDM---VVTCFERALSLALNENAADVWYNISHVA 583
NAEL+ LA +Y M ++A LAL+ N ++ A
Sbjct: 74 RGENAELYAALATVLYYQASQHMTAQTRAMIDKA--LALDSNEITALMLLASDA 125
Score = 38.7 bits (90), Expect = 0.002
Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 464
N ++ + ++ + E A +G + + + +LL YR+ LQ+ NAEL+
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83
Query: 465 LALCCFYSQQYDM---VVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV 521
LA +Y M ++A LAL+ N ++ A + A
Sbjct: 84 LATVLYYQASQHMTAQTRAMIDKA--LALDSNEITALMLLASDAFMQA--------NYAQ 133
Query: 522 ALLFYRRLLQM 532
A+ +++++ +
Sbjct: 134 AIELWQKVMDL 144
Score = 37.2 bits (86), Expect = 0.007
Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 11/123 (8%)
Query: 343 AQQQFNSALNQF--------TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM 394
+QQ + L + E + + Y+ + ++ R AL +
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81
Query: 395 TEMARIFEGLNNMPMS---VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL 451
+A + + M+ L D+ + A+ + + F A+ ++++
Sbjct: 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141
Query: 452 LQM 454
+ +
Sbjct: 142 MDL 144
Score = 31.0 bits (70), Expect = 0.87
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPI---RAIDIGRNAL 384
LG+ Y + + AL + E + + V + + AL
Sbjct: 49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108
Query: 385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
NE+T + +A N +++ ++ ++ +
Sbjct: 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 46.3 bits (111), Expect = 2e-06
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
N E + + + + Y + FE+A+ L+ + W L L +
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKA--LYNL------E 54
Query: 518 QPEVALLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
+ E A+ Y ++ + YN +++ A Y + ++ E L
Sbjct: 55 RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Score = 37.0 bits (87), Expect = 0.003
Identities = 8/57 (14%), Positives = 26/57 (45%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500
++ + + +Q+ ++ + + ++Y+ V C+ +++ +E DVW
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 45.5 bits (109), Expect = 4e-06
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
+AE + NL + YD + +++AL L + N A+ WYN+ NA
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG-----NAYYK---QG 57
Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ A+ +Y++ L++ NAE + NL + YD + +++AL L+ N A+
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQ 115
Query: 578 NI 579
N+
Sbjct: 116 NL 117
Score = 35.1 bits (82), Expect = 0.018
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 30/147 (20%)
Query: 489 ALN-ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
A++ N+A+ WYN+ + A+ +Y++ L++ NAE + NL
Sbjct: 2 AMDPGNSAEAWYNLG--NAYYKQ------GDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53
Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
+ YD + +++AL L + N A+ WYN+ + + QG D
Sbjct: 54 YKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA-----------------YYKQGDYD 94
Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAV 634
AI+ AL +D ++ ++ NL
Sbjct: 95 --EAIEYYQKALELDPNNAEAKQNLGN 119
Score = 29.3 bits (67), Expect = 1.7
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
A+ +Y++ L++ NAE + NL + YD + +++AL L+ N A+ N+
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 48.0 bits (114), Expect = 5e-06
Identities = 25/250 (10%), Positives = 60/250 (24%), Gaps = 60/250 (24%)
Query: 339 LIREAQQQFNSALNQFTD-----IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---- 389
I +A++ ++ ++ + + + Q +A D + + N
Sbjct: 13 HIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL 72
Query: 390 --EVTIMTEMARIFEGLNNMPMSVKYYKLIL----KRDATCMEAIACIGVNHFYNDQ-PE 442
+ + + L MP +V+Y + + A+A
Sbjct: 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLS 132
Query: 443 VALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
A+ Y++ + AEL + Q++D ++ S+
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 556
+ L + Y
Sbjct: 193 --------------------------------------TCYKKCIAQVLVQLHRADYVAA 214
Query: 557 VTCFERALSL 566
C + S+
Sbjct: 215 QKCVRESYSI 224
Score = 45.3 bits (107), Expect = 3e-05
Identities = 18/188 (9%), Positives = 49/188 (26%), Gaps = 32/188 (17%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDI-------EAFIRMIRVYIRLDQPIRAIDIGR 381
+ + + + +A+ + + +AF + + L + A+
Sbjct: 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE 100
Query: 382 NALDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD---------ATCME 426
A Y + ++ E L+ + +V Y+ A +
Sbjct: 101 KASVMYVENGTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERLRQAAELIG 159
Query: 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVT 480
+ + + + A ++ M + L + Y
Sbjct: 160 KASRL---LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216
Query: 481 CFERALSL 488
C + S+
Sbjct: 217 CVRESYSI 224
Score = 44.1 bits (104), Expect = 8e-05
Identities = 28/210 (13%), Positives = 53/210 (25%), Gaps = 47/210 (22%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAILNALSTSV 514
A+ F + Q+ V E+A + + + AA +
Sbjct: 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG----------KL 125
Query: 515 YNDQ-PEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLA 567
A+ Y++ + AEL + Q++D ++ S+
Sbjct: 126 MEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 568 LNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623
V L D A +C+ + SI
Sbjct: 186 KEMENYPTCYKKCIAQVLV----------------QLHRA---DYVAAQKCVRESYSIPG 226
Query: 624 SHGLSQNNLA--VLEA-REGHIERASTYLQ 650
G +L+A E E+ +
Sbjct: 227 FSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
Score = 37.2 bits (86), Expect = 0.013
Identities = 24/227 (10%), Positives = 55/227 (24%), Gaps = 74/227 (32%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAILNALSTSV 514
A + A+ ++Q + + + N +AA + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-------- 87
Query: 515 YNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
+ A+ + + M + N A + V +++A ++
Sbjct: 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFE 146
Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
NE R A + +
Sbjct: 147 NEE-----------------------------------RLRQAAELI------------- 158
Query: 629 QNNLAVLEAREGHIERASTYLQAAAASS------PYLYETHYNQAVI 669
+ L R+ + A+ LQ + P Y+ Q ++
Sbjct: 159 -GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204
Score = 34.1 bits (78), Expect = 0.12
Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 30/149 (20%)
Query: 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIITECSPFS 592
A + A+ ++Q + + + N +AA + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML--------- 86
Query: 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERAS 646
+ + A+Q + A + +G ++ + L + +A
Sbjct: 87 ----------KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-MEPLDLSKAV 135
Query: 647 TYLQAAAASSPYLYETHYNQAVISNLVSV 675
Q AAA +I +
Sbjct: 136 HLYQQAAAVFENEERLRQAAELIGKASRL 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 44.8 bits (106), Expect = 7e-06
Identities = 20/116 (17%), Positives = 27/116 (23%), Gaps = 21/116 (18%)
Query: 542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601
L FE + W ++ E
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENE-------------- 65
Query: 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657
LAI L+ A +D LAV E + A L+A S P
Sbjct: 66 -----KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 44.0 bits (104), Expect = 1e-05
Identities = 9/112 (8%), Positives = 24/112 (21%), Gaps = 12/112 (10%)
Query: 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVAL 523
L FE + W ++ N++ +A+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQA--------ENEKDGLAI 71
Query: 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 575
+ + + + LA+ + + L +
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW--LLSQPQYEQL 121
Score = 44.0 bits (104), Expect = 1e-05
Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
E L N+ + ++ + +++ EA +G+ N++ +A++ +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 497
+ + LA+ + + L +
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAW--LLSQPQYEQL 121
Score = 40.5 bits (95), Expect = 2e-04
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQ-FTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
+ G L + EA F + + EA+ + ++ AI +A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
P ++ + +A +N ++ + L
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 33.6 bits (77), Expect = 0.052
Identities = 10/59 (16%), Positives = 15/59 (25%)
Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
A + + +L + +A A L A P H AV
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94
Score = 32.0 bits (73), Expect = 0.18
Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 1/113 (0%)
Query: 342 EAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401
F + N + E + ++L A P +
Sbjct: 3 NTDYPFEAN-NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQ 61
Query: 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454
+++ D + A + V+H AL R L
Sbjct: 62 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 44.2 bits (105), Expect = 4e-05
Identities = 22/224 (9%), Positives = 46/224 (20%), Gaps = 55/224 (24%)
Query: 442 EVALLFYRRL-LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAAD 496
L + L + ++D F+ A +
Sbjct: 10 LAERQAQALLAHPATA--SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67
Query: 497 VWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM-------GLYNAELFNNLALCC 547
+ + V + A + ++ L + +A
Sbjct: 68 ALHQVG----------MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117
Query: 548 FYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603
+ +E++L A A + + +A +
Sbjct: 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA-----------------QQE 160
Query: 604 GISDTRLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGH 641
+ A Q A I + L LE H
Sbjct: 161 K--NLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Score = 36.5 bits (85), Expect = 0.014
Identities = 19/194 (9%), Positives = 42/194 (21%), Gaps = 44/194 (22%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
LG Y + EA+ F + Q D
Sbjct: 31 MLGYVYAFMDRFDEARASFQALQQQAQKSG------------DHTAEHR--------ALH 70
Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYK--LILKR---DATCMEAIAC--IGVNHFYNDQP 441
+ + N + + + L + + + +
Sbjct: 71 Q-------VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 442 EVALLFYRRLLQMG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL----N 491
A Y + L + A F L + + RA + +
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183
Query: 492 ENAADVWYNISHVA 505
E ++ ++ +
Sbjct: 184 EAVNELMTRLNGLE 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 1e-04
Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 33/126 (26%)
Query: 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIRE-------AQ 344
+Y + ++ HH + + FR + + + A
Sbjct: 471 QYFYSHIGHH-------LKNIEHPERMTLFRMV---------FLDFRFLEQKIRHDSTAW 514
Query: 345 QQFNSALNQFTDIEAFIRMIRVYIRLDQPI---RAIDIGRNALDCYPNEVTIMTEMARIF 401
S LN ++ + + YI + P I E I ++ +
Sbjct: 515 NASGSILNTLQQLKFY----KPYICDNDPKYERLVNAILDFLPKI--EENLICSKYTDLL 568
Query: 402 E-GLNN 406
L
Sbjct: 569 RIALMA 574
Score = 36.8 bits (84), Expect = 0.026
Identities = 52/429 (12%), Positives = 123/429 (28%), Gaps = 119/429 (27%)
Query: 141 ELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTN--TIATAARPGTSLKT 198
LL PY+ L L + +++ + ++ + + + T T K
Sbjct: 236 RLLKSKPYE--------NCL---LVLLNVQNAK--AWNA-FNLSCKILLT-----TRFKQ 276
Query: 199 -AAVTAPALTSRPRTESGRPVSGVVRPGT---LASRGGTLEQSLKTPRTAKSARPLT-SQ 253
+ A T+ + + L Q L PR + P S
Sbjct: 277 VTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSI 332
Query: 254 AARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAV 313
A +IR DG + + + + + + + + ++ ++
Sbjct: 333 IAESIR----------DGL----ATWD---------------NWKHVNCDKLTTIIESSL 363
Query: 314 ESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRL--- 370
+ E+R K + L + + I + +
Sbjct: 364 NVLEPAEYR---------KMFDRLSVFPPS-----------AHI-----PTILLSLIWFD 398
Query: 371 -----DQPIRAIDIGRNALDCYPNE--VTIMTEMARIFEGLNNMP----MSVKYYKLILK 419
+ + ++ P E ++I + + L N V +Y +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 420 RDATCMEAIAC-------IGVNHFYN-DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471
D+ + IG +H N + PE LF L ++ ++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 472 SQQYDMV--VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529
+ + + ++ + N+ + ++NA+ + + + Y L
Sbjct: 518 GSILNTLQQLKFYKPYICD--NDPKYE--------RLVNAILDFLPKIEENLICSKYTDL 567
Query: 530 LQMGLYNAE 538
L++ L +
Sbjct: 568 LRIALMAED 576
Score = 33.7 bits (76), Expect = 0.25
Identities = 49/353 (13%), Positives = 96/353 (27%), Gaps = 116/353 (32%)
Query: 409 MSVKYYKLI------LKRDATCME-------AIACIGVNHFYNDQPEVA---LLFYRRLL 452
+Y ++ + C + ++ ++H + V+ LF+ LL
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LL 72
Query: 453 QMGLYNAELFNNLALCCFYS----------QQYDMVVTCFERALSLALNENAADVWYNIS 502
+ F L Y +Q M+ + N+N YN+S
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 503 HVAILNALSTSVYNDQPE------------------VALLFYRRLLQM---------GLY 535
+ L ++ +P L Y+ +M
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 536 N--AELFNNL-ALC----CFYSQQYD-------------------MVVTCFERALSLALN 569
N + L L ++ + D + +E L L L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLL 251
Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFI---QGISDTRLAIQCLHLALSIDSSHG 626
+V N + F+ S L + ++D A H++L S
Sbjct: 252 ----NVQ-NAKAW------NAFNLSCKI--LLTTRFKQVTDFLSAATTTHISL-DHHSMT 297
Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN--LVSVIP 677
L+ + + L + YL P + + +N +S+I
Sbjct: 298 LTPDEVKSLLLK---------YLDCRPQDLP-------REVLTTNPRRLSIIA 334
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 42.5 bits (99), Expect = 3e-04
Identities = 15/166 (9%), Positives = 46/166 (27%), Gaps = 20/166 (12%)
Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALL 446
+A + + K +L + T + I + N + +
Sbjct: 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGID 176
Query: 447 FYRRLLQM-------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 499
+ ++L+ ++ ++ N A + +Y+ + +A+ ++ N
Sbjct: 177 LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---SMA 233
Query: 500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
I + + Y++ ++ A
Sbjct: 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF----FDILEMHAY 275
Score = 38.2 bits (88), Expect = 0.005
Identities = 15/135 (11%), Positives = 47/135 (34%), Gaps = 17/135 (12%)
Query: 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY-NDQ 518
+ +A Y+ + ++ L+ L ++ I NA++ N
Sbjct: 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-----DVYQNLYIENAIANIYAENGY 170
Query: 519 PEVALLFYRRLLQM-------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 571
+ + + ++L+ ++ ++ N A + +Y+ + +A+ ++ N
Sbjct: 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230
Query: 572 A----ADVWYNISHV 582
+ ++Y
Sbjct: 231 SMALIGQLYYQRGEC 245
Score = 34.4 bits (78), Expect = 0.11
Identities = 9/141 (6%), Positives = 30/141 (21%), Gaps = 19/141 (13%)
Query: 293 YLFEYLYHHENDVASAMDLAVESTKACEFRDWWWK-----VQLGKCYFSLGLIREAQQQF 347
Y + D + + ++ + Y G +++ F
Sbjct: 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178
Query: 348 NSALNQFTD--------IEAFIRMIRVYIRLDQPIRAIDIGRNALD------CYPNEVTI 393
L Q ++ + + ++ A++ +
Sbjct: 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238
Query: 394 MTEMARIFEGLNNMPMSVKYY 414
+ L ++
Sbjct: 239 YYQRGECLRKLEYEEAEIEDA 259
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 39.7 bits (93), Expect = 4e-04
Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 474 QYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYND--QPEVALLFYRRLL 530
V +E+A++ L + A+ + + S + + A +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLG----------STFRTLGEYRKAEAVLANGV 54
Query: 531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 572
+ + L A+ + +Y+ V + ++ ++
Sbjct: 55 KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 33.5 bits (77), Expect = 0.049
Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 440 QPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
A+ +Y + + GL AE + L +Y + N
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG--VKQFPNHQA 62
Query: 497 VWYNISHVAILNALSTSVYN-DQPEVALLFYRRLLQMGLYNAELFN-NLALCCFYSQQYD 554
+ + +YN + E + +++ + + + A+ FY+ + D
Sbjct: 63 LRVF---------YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI-LFYADKLD 112
Query: 555 MV 556
Sbjct: 113 ET 114
Score = 33.5 bits (77), Expect = 0.056
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 518 QPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSL-----ALN 569
A+ +Y + + GL AE + L +Y + AL
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 570 ENAADVWYN 578
A V YN
Sbjct: 65 VFYAMVLYN 73
Score = 32.0 bits (73), Expect = 0.16
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 21/119 (17%)
Query: 552 QYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610
V +E+A++ L + A+ + + S G + R
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLG-----------------STFRTLG--EYRK 45
Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA-STYLQAAAASSPYLYETHYNQAV 668
A L + +H + A++ G E+ L+ A +S Y QA+
Sbjct: 46 AEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104
Score = 28.9 bits (65), Expect = 2.4
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI-RVYIRLDQPIRAIDIGRNALDCY 387
LG + +LG R+A+ + + QF + +A V L + + +++ +
Sbjct: 32 GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91
Query: 388 PNEVTI 393
++ TI
Sbjct: 92 SDDETI 97
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 36.9 bits (86), Expect = 0.003
Identities = 23/119 (19%), Positives = 31/119 (26%), Gaps = 23/119 (19%)
Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581
+L G N L L +Q+D + A L + + W +
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA--LDFDPTYSVAWKWLGK 61
Query: 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAR 638
L QG D A Q L+ S G Q L V R
Sbjct: 62 T-----------------LQGQG--DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 10/99 (10%)
Query: 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540
E L A + + + + + +Q + AL R L + +
Sbjct: 7 RLEAML--AQGTDNMLLRFTLG-----KTYAEH---EQFDAALPHLRAALDFDPTYSVAW 56
Query: 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
L +E L+ A + V +
Sbjct: 57 KWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKEL 95
Score = 33.1 bits (76), Expect = 0.064
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 665
+ L L+ + + L + L A + A +L+AA P
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58
Score = 32.7 bits (75), Expect = 0.085
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500
+L G N L L +Q+D + A L + + W
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA--LDFDPTYSVAWKW 58
Score = 30.8 bits (70), Expect = 0.40
Identities = 10/62 (16%), Positives = 17/62 (27%)
Query: 440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 499
Q + AL R L + + L +E L+ A + V
Sbjct: 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93
Query: 500 NI 501
+
Sbjct: 94 EL 95
Score = 28.8 bits (65), Expect = 1.9
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 21/99 (21%)
Query: 559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618
E L A + + + + A+ L A
Sbjct: 7 RLEAML--AQGTDNMLLRFTLGKT-----------------YAEHE--QFDAALPHLRAA 45
Query: 619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657
L D ++ ++ L +G A ++ A++
Sbjct: 46 LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Score = 28.1 bits (63), Expect = 3.7
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
LGK Y A +AL+ A+ + + A + L
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Query: 389 N 389
+
Sbjct: 85 S 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 39.2 bits (91), Expect = 0.004
Identities = 30/310 (9%), Positives = 75/310 (24%), Gaps = 47/310 (15%)
Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQ----LGKCYFSLGLIREAQQQFNSAL- 351
+ ++ + A LA + + ++ ++ LG+ G + +
Sbjct: 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81
Query: 352 ------NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALD--------CYPNEVTIMTEM 397
+ + I+ + A + A P ++
Sbjct: 82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141
Query: 398 ARIFEGLNNMPMSVKYYKLILK-----RDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 452
A++ + + + ++ + ++ +A + + A RL
Sbjct: 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201
Query: 453 QMG-------LYNAELFNNLALCCFYSQQYDMVVTCFERA--LSLALNENAADVWYNISH 503
+ + + + + A N W NI+
Sbjct: 202 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261
Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMG------LYNAELFNNLALCCFYSQQYDMVV 557
IL + E A + L + L + + +
Sbjct: 262 AQILLG--------EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313
Query: 558 TCFERALSLA 567
AL LA
Sbjct: 314 RVLLDALKLA 323
Score = 31.9 bits (72), Expect = 0.79
Identities = 36/333 (10%), Positives = 77/333 (23%), Gaps = 60/333 (18%)
Query: 356 DIEAFIRMIR--VYIRLDQPIRAIDIGRNAL-----DCYPNEVTIMTEMARIFEGLNNMP 408
+ A +R V I P A + + AL + + + + + + +
Sbjct: 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 70
Query: 409 MSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-------- 454
S+ + + + ++ F + A + Q+
Sbjct: 71 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130
Query: 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514
+ L A + + D + + + ++ + S+
Sbjct: 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC-----SL 185
Query: 515 YNDQPEVALLFYRRLLQMG-------LYNAELFNNLALCCFYSQQYDMVVTCFERA--LS 565
+ A RL + + + + +
Sbjct: 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245
Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
A N W NI+ I+ G + A L S
Sbjct: 246 FANNHFLQGQWRNIARAQIL-----------------LG--EFEPAEIVLEELNENARSL 286
Query: 626 GL------SQNNLAVLEAREGHIERASTYLQAA 652
L + L L + G A L A
Sbjct: 287 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 37.9 bits (89), Expect = 0.007
Identities = 42/254 (16%), Positives = 72/254 (28%), Gaps = 66/254 (25%)
Query: 437 YNDQ--PEVALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMVVTCFERAL 486
Y DQ + A L + A NNLA+ +Y +RAL
Sbjct: 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138
Query: 487 SL---ALNENAADVWYNISHVAILNALST--SVYNDQ--PEVALLFYRRLLQMGL----- 534
+ L ++ H + L+ + +Q E +Y+R L++
Sbjct: 139 EIREKVLGKD---------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189
Query: 535 ---YNAELFNNLALCCFYSQQYDMVVTCFERALSL----ALNENAADV---WYNISHVAI 584
A+ NNLA C ++ T ++ L+ + W +
Sbjct: 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER-- 247
Query: 585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS---SH---GLSQNNLAVLEAR 638
+G + + + NL L R
Sbjct: 248 ---------------EECKG--KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR 290
Query: 639 EGHIERASTYLQAA 652
+G E A T +AA
Sbjct: 291 QGKFEAAETLEEAA 304
Score = 35.2 bits (82), Expect = 0.055
Identities = 18/143 (12%), Positives = 35/143 (24%), Gaps = 27/143 (18%)
Query: 444 ALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMVVTCFERALSL----ALN 491
+Y+R L++ A+ NNLA C ++ T ++ L+
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 492 ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYN------AELFNNL 543
+ I + + F NL
Sbjct: 232 SVDDEN------KPIWMHAE-EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNL 284
Query: 544 ALCCFYSQQYDMVVTCFERALSL 566
+++ T E A+
Sbjct: 285 GALYRRQGKFEAAETLEEAAMRS 307
Score = 35.2 bits (82), Expect = 0.056
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 28/123 (22%)
Query: 459 AELFNNLALCCFYSQQ--YDMVVTCFERALSL---ALNENAADVWYNISHVAILNALST- 512
+NL + Y+ Q Y++ V ++AL + H + L+
Sbjct: 27 LRTLHNLVIQ--YASQGRYEVAVPLCKQALEDLEKTSGHD---------HPDVATMLNIL 75
Query: 513 -SVYNDQ--PEVALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMVVTCFE 561
VY DQ + A L + A NNLA+ +Y +
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 562 RAL 564
RAL
Sbjct: 136 RAL 138
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 37.5 bits (88), Expect = 0.010
Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 64/258 (24%)
Query: 434 NHFYNDQ----PEVALLFYRRLLQMGLYN--------AELFNNLALCCFYSQQYDMVVTC 481
+H ++ A+ ++ L+ A + N LAL +Y
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 482 FERALSL---ALNENAADVWYNISHVAILNALST--SVYNDQ--PEVALLFYRRLLQM-- 532
AL++ L ++ H A+ L+ +Y + + A +R L++
Sbjct: 66 LNDALAIREKTLGKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116
Query: 533 ---GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSL---ALNENAADVWYNISHVA 583
G ++ A+ NNLAL C + + V + RAL + L + +V +++A
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Query: 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSHG---LSQNNLAV 634
QG + A L+ S +G +
Sbjct: 177 SC--------------YLKQG--KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEE 220
Query: 635 LEAREGHIERASTYLQAA 652
E + ++ Y +
Sbjct: 221 REESKDKRRDSAPYGEYG 238
Score = 36.7 bits (86), Expect = 0.017
Identities = 44/258 (17%), Positives = 73/258 (28%), Gaps = 70/258 (27%)
Query: 437 YNDQ--PEVALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQ--YDMVVTCFER 484
Y DQ + A L + A NNLA+ Y ++ Y +R
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL--YGKRGKYKEAEPLCKR 110
Query: 485 ALSL---ALNENAADVWYNISHVAILNALST--SVYNDQ--PEVALLFYRRLLQMGL--- 534
AL + L + H + L+ + +Q E +YRR L++
Sbjct: 111 ALEIREKVLGKF---------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161
Query: 535 -----YNAELFNNLALCCFYSQQYDMVVTCFERALSL----ALNENAADV---WYNISHV 582
A+ NNLA C +Y T ++ L+ D W +
Sbjct: 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221
Query: 583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS---SH---GLSQNNLAVLE 636
+ R + + + +L L
Sbjct: 222 -----------------EESKD--KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262
Query: 637 AREGHIERASTYLQAAAA 654
R+G +E A T A+
Sbjct: 263 RRQGKLEAAHTLEDCASR 280
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 36.1 bits (83), Expect = 0.025
Identities = 21/208 (10%), Positives = 50/208 (24%), Gaps = 35/208 (16%)
Query: 305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD-------I 357
++ ++L + K + K+ G EA A +
Sbjct: 1 ISDPVELLKRAEKKGVPSSGFMKLFSGS---DSYKFEEAADLCVQAATIYRLRKELNLAG 57
Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCY-----PNE-VTIMTEMARIFEGLNNMPMSV 411
++F++ + A + A C+ V + +IF
Sbjct: 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117
Query: 412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNL 465
+ + +E A+ Y + + + F
Sbjct: 118 NFKFEL----GEILENDL---------HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164
Query: 466 ALCCFYSQQYDMVVTCFERALSLALNEN 493
A QY + + + ++
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNR 192
Score = 32.3 bits (73), Expect = 0.43
Identities = 11/123 (8%), Positives = 27/123 (21%), Gaps = 17/123 (13%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAILNALSTSV 514
+ C V E A+ + + A+ + +
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL-------GEILEN 129
Query: 515 YNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
A+ Y + + + F A QY + + + ++
Sbjct: 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189
Query: 569 NEN 571
Sbjct: 190 GNR 192
Score = 30.4 bits (68), Expect = 1.6
Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 28/141 (19%)
Query: 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFS 592
+ C V E A+ + + A+ + +
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE----------- 125
Query: 593 FSTHTSYLFIQGISDTRLAIQCLHLALS----IDSSHGLSQ--NNLAVLEAREGHIERAS 646
+ + D AI C LA S ++ A L+A +G AS
Sbjct: 126 -------ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178
Query: 647 TYLQAAAASSPYLYETHYNQA 667
SS + ++
Sbjct: 179 DIYSKLIKSSMGNRLSQWSLK 199
Score = 29.2 bits (65), Expect = 4.1
Identities = 16/150 (10%), Positives = 36/150 (24%), Gaps = 30/150 (20%)
Query: 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFS 592
A+L A ++ ++ F +A A + +
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF--------- 87
Query: 593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL------SQNNLA-VLEAREGHIERA 645
+ ++ A+ L A+ I + G + L +LE +A
Sbjct: 88 ----------KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA 137
Query: 646 STYLQAAAASSPYLYETHYNQAVISNLVSV 675
+ A + +
Sbjct: 138 IDCYELAGEWYAQDQSVALSNKCFIKCADL 167
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 32.0 bits (74), Expect = 0.10
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 489 ALN-ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLAL 545
A++ N+A+ WYN+ + Y Q + A+ +Y++ L++ NAE + NL
Sbjct: 2 AMDPGNSAEAWYNLG----------NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 51
Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
+ YD + +++AL L+ N A+ N+
Sbjct: 52 AYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 83
Score = 28.9 bits (66), Expect = 1.1
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 537 AELFNNLALCCFYSQ-QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
AE + NL +Y Q YD + +++AL L + N A+ WYN+ +
Sbjct: 9 AEAWYNLGNA-YYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA------------- 52
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634
+ QG D AI+ AL +D ++ ++ NL
Sbjct: 53 ----YYKQGDYD--EAIEYYQKALELDPNNAEAKQNLGN 85
Score = 28.1 bits (64), Expect = 2.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
NAE + NL + YD + +++AL L+ N A+ N+
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 83
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 31.9 bits (73), Expect = 0.12
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 444 ALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 502
AL LQ + E + + + + ++ A+ LN ++ +
Sbjct: 19 ALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPDSPALQARKM 76
Query: 503 HVAILNALSTSVYN 516
+ ILN + +YN
Sbjct: 77 VMDILNFYNKDMYN 90
Score = 26.9 bits (60), Expect = 6.6
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 522 ALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
AL LQ + E + + + + ++ A+ L
Sbjct: 19 ALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 32.7 bits (75), Expect = 0.12
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
+ AL Y + ++ N N A F Y+ E+A+ +
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80
Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 546
++ I N+ ++ + A+ FY + L ++
Sbjct: 81 AYARIGNSYFKE---EKYKDAIHFYNKSLAEH-RTPDVLKKCQQA 121
Score = 31.5 bits (72), Expect = 0.28
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
+ AL Y + ++ N N A F Y+ E+A+ +
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller,
alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB:
2pm6_A 3mzl_B
Length = 399
Score = 34.0 bits (77), Expect = 0.14
Identities = 20/182 (10%), Positives = 47/182 (25%), Gaps = 25/182 (13%)
Query: 482 FERALSLALNENAADVWYNIS------HVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535
R L D+ N+ + L + + E+ + R+ + G
Sbjct: 205 LSRILYSISKREVDDLVENLDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHR 264
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
L + D V + + ++ D + + +
Sbjct: 265 QDSL-----TLYLAAGSLDKVASIWLSEFPDLEDKLKKD------------NKTIYEAHS 307
Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
FI+ + I + + L G+ E A+ +L + +
Sbjct: 308 ECMTEFIERFTVFSNFINGSSTINNEQLIAKFLE--FINLTTSTGNFELATEFLNSLPSD 365
Query: 656 SP 657
+
Sbjct: 366 NE 367
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.16
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 17/34 (50%)
Query: 89 TSLKTAANDQQPISTSVMSTPGSAPT----ATVD 118
SLK A SAP AT++
Sbjct: 27 ASLKLYA-------------DDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 0.72
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 194 TSLKT-AAVTAPALTSRPRTE 213
SLK A +APAL + E
Sbjct: 27 ASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.0
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 234 LEQSLK--TPRTAKSARP-LTSQAARTI 258
L+ SLK +A P L +A T+
Sbjct: 25 LQASLKLYADDSA----PALAIKA--TM 46
Score = 29.9 bits (66), Expect = 1.6
Identities = 5/14 (35%), Positives = 7/14 (50%), Gaps = 4/14 (28%)
Query: 4 PGSAPT----ATVD 13
SAP AT++
Sbjct: 34 DDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 2.2
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 21/44 (47%)
Query: 275 QVSRL--NLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVEST 316
+ +L +L YA D SA LA+++T
Sbjct: 21 ALKKLQASLKLYADD-------------------SAPALAIKAT 45
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 31.9 bits (73), Expect = 0.17
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500
+ LA + FE + + + +Y+
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYH 46
Score = 31.9 bits (73), Expect = 0.17
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
+ LA + FE + + + +Y+
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYH 46
Score = 29.9 bits (68), Expect = 0.71
Identities = 9/65 (13%), Positives = 22/65 (33%)
Query: 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490
+ H +D AL + L++ + +L + D + + + + +A
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 491 NENAA 495
E
Sbjct: 73 EEGTQ 77
Score = 29.2 bits (66), Expect = 1.5
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550
+ Y ++ +D AL + L++ + +L
Sbjct: 3 DPEDPFTRYALA-----QEHLK---HDNASRALALFEELVETDPDYVGTYYHLGKLYERL 54
Query: 551 QQYDMVVTCFERALSLALNENAA 573
+ D + + + + +A E
Sbjct: 55 DRTDDAIDTYAQGIEVAREEGTQ 77
Score = 28.4 bits (64), Expect = 2.1
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
LA + + RA + + P T+Y+ +
Sbjct: 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL 50
Score = 28.4 bits (64), Expect = 2.7
Identities = 6/53 (11%), Positives = 13/53 (24%)
Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663
A+ + D + + +L L R + A +
Sbjct: 26 ALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 32.3 bits (74), Expect = 0.19
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 37/142 (26%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
G + E A + Y + +++ N +NN A F +++ V E+A+ +
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74
Query: 492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 551
A A+ +
Sbjct: 75 TRADYKLI-------------------------------------AKAMSRAGNAFQKQN 97
Query: 552 QYDMVVTCFERALSLALNENAA 573
+ V F R+LS +
Sbjct: 98 DLSLAVQWFHRSLSEFRDPELV 119
Score = 31.1 bits (71), Expect = 0.38
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
E A + Y + +++ N +NN A F +++ V E+A+ + A
Sbjct: 25 EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 32.0 bits (72), Expect = 0.57
Identities = 16/185 (8%), Positives = 43/185 (23%), Gaps = 28/185 (15%)
Query: 473 QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM 532
+ + + + + V I+ + Q ++ +
Sbjct: 213 KSLNRASELLGEIV--QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270
Query: 533 GLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSP 590
N + ++ A+ + D + L + + + + V
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTG--IDLEMSWLN-YVLLGKV-------- 319
Query: 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 650
++G R A A ++ + + + YL
Sbjct: 320 ---------YEMKG--MNREAADAYLTAFNLRPGANTLYWIENGI--FQTSVPYVVPYLD 366
Query: 651 AAAAS 655
AS
Sbjct: 367 KFLAS 371
Score = 28.5 bits (63), Expect = 7.5
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN 389
G E+ Q N+ ++ ++ + +VY A D A + P
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342
Query: 390 EVTIMTEMARIFEGLNNMPMSVKYY 414
T+ IF+ ++P V Y
Sbjct: 343 ANTLYWIENGIFQ--TSVPYVVPYL 365
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 30.6 bits (68), Expect = 0.78
Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 13/124 (10%)
Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515
+ A L + A + +YD RA+ ++ + + + A +A
Sbjct: 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 67
Query: 516 ND--QPEVALLFYRRLLQMGLYNAEL-----------FNNLALCCFYSQQYDMVVTCFER 562
+ AL + L EL + AL + + F++
Sbjct: 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127
Query: 563 ALSL 566
+ +
Sbjct: 128 VVEM 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 31.2 bits (70), Expect = 1.2
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR----LLQMGLYNA 459
L + + + +++ K + G +F + A++ Y + L +
Sbjct: 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE 306
Query: 460 E-----------LFNNLALCCFYSQQYDMVVTCFERALSL 488
+ F NLA+C ++Y V C ++AL L
Sbjct: 307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 29.5 bits (67), Expect = 1.5
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
G + E A+ FY + +++ NA F N A Y V ERA+ ++
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--ID 76
Query: 492 ENAADVWYN 500
+ +
Sbjct: 77 PAYSKAYGR 85
Score = 27.9 bits (63), Expect = 4.7
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
E A+ FY + +++ NA F N A Y V ERA+ ++ + +
Sbjct: 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGR 85
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 29.3 bits (66), Expect = 1.6
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTD----IEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
LG+ Y++ + A+ QF ++++ +++ + A +
Sbjct: 45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104
Query: 386 CYPN 389
YP
Sbjct: 105 QYPG 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 30.6 bits (69), Expect = 1.7
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAE---------------LFNNLALCCFYSQQYD 476
G +F + + ALL Y++++ Y + NLA+C Q +
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213
Query: 477 MVVTCFERALSL 488
+ +AL L
Sbjct: 214 AAIESCNKALEL 225
Score = 30.6 bits (69), Expect = 1.8
Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 22/146 (15%)
Query: 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSAL 351
KY + + M+ + ++ ++ G YF G ++A Q+ +
Sbjct: 121 KYELHLKSFEKAKESWEMNSEEKLEQSTIVKER------GTVYFKEGKYKQALLQYKKIV 174
Query: 352 NQFTDIEAF-------IRMIRV---------YIRLDQPIRAIDIGRNALDCYPNEVTIMT 395
+ +F + +R+ +++L AI+ AL+ N ++
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234
Query: 396 EMARIFEGLNNMPMSVKYYKLILKRD 421
+N+ ++ ++ +L+
Sbjct: 235 RRGEAHLAVNDFELARADFQKVLQLY 260
Score = 28.7 bits (64), Expect = 6.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 539 LFNNLALCCFYSQQYDMVVTCFERALSL 566
NLA+C Q + + +AL L
Sbjct: 198 SHLNLAMCHLKLQAFSAAIESCNKALEL 225
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 28.8 bits (65), Expect = 2.1
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
A+ Y +L+ N ++N A+ +Y + ++ L
Sbjct: 23 AVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
Score = 28.8 bits (65), Expect = 2.1
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
A+ Y +L+ N ++N A+ +Y + ++ L
Sbjct: 23 AVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 29.6 bits (66), Expect = 2.4
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD 356
Y + H+N +ST++ K+ LI + QQF N+F +
Sbjct: 22 YGFRHQNAQGEGTAADYKSTQSA-IDQITGKLN--------RLIGKTNQQFELIDNEFNE 72
Query: 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM---TEMARIFE------GLNNM 407
IE I + + R D L N+ TI +EM++++E N
Sbjct: 73 IEQQIGNVINWTR-DAMTEIWSYNAELLVAMENQHTIDLADSEMSKLYERVKKQLRENAE 131
Query: 408 PMSVKYYKLILKRDATCMEAIA 429
+++ K D CME+I
Sbjct: 132 EDGTGCFEIFHKCDDQCMESIR 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 30.0 bits (67), Expect = 2.6
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 19/128 (14%)
Query: 378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY 437
G + P ++ E+ I + + ++ + G + F
Sbjct: 134 KEGNFSFPNVPPMADLLYEVEVIGF--DETKEGKARSDMTVEERIGAADRRKMDGNSLFK 191
Query: 438 NDQPEVALLFYRRLLQ-------MGLYNAE----------LFNNLALCCFYSQQYDMVVT 480
++ E A+ Y + LY N+A C ++YD +
Sbjct: 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251
Query: 481 CFERALSL 488
L+
Sbjct: 252 HCNIVLTE 259
Score = 28.4 bits (63), Expect = 7.6
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 539 LFNNLALCCFYSQQYDMVVTCFERALSL 566
N+A C ++YD + L+
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE 259
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA; 2.50A
{Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 29.2 bits (65), Expect = 3.1
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD 356
Y + H+N + ++ST+A K+ +I + ++F+ +F++
Sbjct: 22 YGFRHQNSEGTGQAADLKSTQAA-IDQINGKLN--------RVIEKTNEKFHQIEKEFSE 72
Query: 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM---TEMARIFE------GLNNM 407
+E I+ + Y+ D I L N+ TI +EM ++FE N
Sbjct: 73 VEGRIQDLEKYVE-DTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAE 131
Query: 408 PMSVKYYKLILKRDATCMEAIA 429
M +K+ K D C+E+I
Sbjct: 132 EMGNGCFKIYHKCDNACIESIR 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 28.3 bits (64), Expect = 3.6
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
+ AL Y +++ +N L++N + Y + + L
Sbjct: 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Score = 28.3 bits (64), Expect = 3.6
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
+ AL Y +++ +N L++N + Y + + L
Sbjct: 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 28.9 bits (64), Expect = 3.7
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD 356
Y + H ND M +ST+ KV ++ + +Q+ ++F++
Sbjct: 22 YGFQHSNDQGVGMAADSDSTQKA-IDKITSKVN--------NIVDKMNKQYGIIDHEFSE 72
Query: 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM---TEMARIFEGL------NNM 407
IE + MI I DQ L N+ T+ + ++ + N M
Sbjct: 73 IETRLNMINNKID-DQIQDIWTYNAELLVLLENQKTLDEHDANVNNLYNKVKRALGSNAM 131
Query: 408 PMSVKYYKLILKRDATCMEAIA 429
++L K D CME I
Sbjct: 132 EDGKGCFELYHKCDDQCMETIR 153
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 29.6 bits (65), Expect = 4.1
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 483
C + +G Y +Q A +YR Q+ N + +N LA+ + + +
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 484 RAL 486
R++
Sbjct: 211 RSI 213
Score = 28.4 bits (62), Expect = 9.8
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
A FY +LLQ +FN + L C +++ + S + ++ Y
Sbjct: 98 ASGFYTQLLQ---ELCTVFN-VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-Q 152
Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563
+++ + Y +Q A +YR Q+ N + +N LA+ + + + R+
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
Query: 564 L 564
+
Sbjct: 213 I 213
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B*
3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B*
2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B*
3r2x_B* 3sm5_B* ...
Length = 174
Score = 28.9 bits (64), Expect = 4.2
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 19/148 (12%)
Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD 356
Y YHH ND S EST+ F KV +I + QF + +F++
Sbjct: 22 YGYHHSNDQGSGYAADKESTQKA-FDGITNKVN--------SVIEKMNTQFEAVGKEFSN 72
Query: 357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM---TEMARIFE------GLNNM 407
+E + + + D + L NE T+ + + +++ N
Sbjct: 73 LERRLENLNKKME-DGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVK 131
Query: 408 PMSVKYYKLILKRDATCMEAIACIGVNH 435
+ ++ K D CM ++ ++
Sbjct: 132 ELGNGCFEFYHKCDDECMNSVKNGTYDY 159
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A
{Homo sapiens} SCOP: a.6.1.4
Length = 106
Score = 27.7 bits (61), Expect = 4.7
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 26/92 (28%)
Query: 331 GKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390
G+ L Q NS L F+ + ++I + C ++
Sbjct: 31 GEKRLCL------PQILNSVLRDFSLQQINAVCDELHIYCSR-------------CTADQ 71
Query: 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDA 422
+ I + + +P S LI K DA
Sbjct: 72 L-------EILKVMGILPFSAPSCGLITKTDA 96
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP:
a.6.1.4
Length = 101
Score = 27.3 bits (60), Expect = 5.7
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA 422
L + + L+ P + E RI GL + V KLI ++D
Sbjct: 41 LVGGLHTVYTKLKRLEITPVVCNV--EQVRILRGLGAIQPGVNRCKLISRKDF 91
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 27.8 bits (62), Expect = 7.4
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
A+ Y + L + N +N A S Q++ E A +
Sbjct: 30 AIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Score = 27.8 bits (62), Expect = 7.4
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
A+ Y + L + N +N A S Q++ E A +
Sbjct: 30 AIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
G +F A+ Y +++ +A ++N A + + +A+
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 28.4 bits (64), Expect = 8.6
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 18/45 (40%)
Query: 326 WKVQLGKCYFSLG--------------LIREAQQQFNSALNQFTD 356
+K K Y + ++ A+N +D
Sbjct: 11 YKKAFNKSYATFEDEEAARKNFLESVKYVQS----NGGAINHLSD 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.384
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,992,099
Number of extensions: 596667
Number of successful extensions: 2428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1634
Number of HSP's successfully gapped: 361
Length of query: 677
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 577
Effective length of database: 3,909,693
Effective search space: 2255892861
Effective search space used: 2255892861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)