BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16608
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZYI9|USB1_XENLA Putative U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2
SV=1
Length = 250
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 7/206 (3%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSV----GISVEVIPE 56
+D +H GRIRSF H+R +WAT VYIP Q + L +EL SV G+ + + E
Sbjct: 46 LDENTKHEGRIRSFKHERGNWATYVYIPFQPQ--EEFLDLLDELVSVAAENGVLLTKMSE 103
Query: 57 PHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC 116
H+S S+T+V+ +HWI+ VE+L + L + R I+++ N+EKTR+F+ L +
Sbjct: 104 FHISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLEVSVG 163
Query: 117 KTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFK 175
L +V VD+S QEF L T+Y+EP+FH S+AWC+ DK LK L +L + +F+
Sbjct: 164 MEHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKYEKLKGSCLLELQKVIDRFE 223
Query: 176 LTSDESFHVVTHIHMKTGNKFYSFPL 201
+ + I K GNK + PL
Sbjct: 224 DSDTLTRFNAEEIRCKAGNKTFCIPL 249
>sp|Q91W78|USB1_MOUSE Putative U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2
SV=1
Length = 267
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 117/203 (57%), Gaps = 3/203 (1%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQT--NLARLYAMLKEELNSVGISVEVIPEPHL 59
D+ +HGGRIR+FPH+R +WAT +YIP + + L L + ++ E H+
Sbjct: 64 DDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHV 123
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLS+++V+ +HWI V+ L + + R N ++I+ N+EKTR+FI L +S
Sbjct: 124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFKLTS 178
+V VD++ +EF L T+Y++P+FH S+AWC+ D + L+ L +L I +F+ +
Sbjct: 184 FLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQCLQELQEIVDEFEDSE 243
Query: 179 DESFHVVTHIHMKTGNKFYSFPL 201
+ + K+GNKF+S PL
Sbjct: 244 MLLRVLANQVRCKSGNKFFSMPL 266
>sp|Q5I0I5|USB1_RAT Putative U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1
PE=2 SV=1
Length = 267
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 3/203 (1%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN--LARLYAMLKEELNSVGISVEVIPEPHL 59
D+ HGGRIR+FPH+R +WAT +YIP + N L +L + + E HL
Sbjct: 64 DDSARHGGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRLVQMEEFHL 123
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLS+++V+ +HWI V+ L + + R N ++I+ N+EKTR+FI L +S
Sbjct: 124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTK-LDNIFTQFKLTS 178
+V VD+ +EF L T+Y++P+FH S+AWC+ D L+ + L I +F+ +
Sbjct: 184 FLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDEFEDSE 243
Query: 179 DESFHVVTHIHMKTGNKFYSFPL 201
+ + K+GNKF+S PL
Sbjct: 244 MLLRVLAEQVRCKSGNKFFSMPL 266
>sp|Q0II50|USB1_BOVIN Putative U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1
Length = 265
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 118/207 (57%), Gaps = 9/207 (4%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVG--ISVEVIP 55
+D+ +HGGR+R+FPH+R +WAT VYIP + L L A+L V + +E
Sbjct: 61 VDDSAKHGGRVRTFPHERGNWATHVYIPYEAREEFLDLLDALLCHAQTYVPRLVRMEAF- 119
Query: 56 EPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANS 115
HLSLS+++V+ +HWI V+ L + + +R + ++I+ N+EKTR+F+ L S
Sbjct: 120 --HLSLSQSVVLRHHWILPFVQALKDRVASFHRFCFTTDQVKIYTNQEKTRTFVGLEVTS 177
Query: 116 CKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQF 174
+V VD+ +EF L T+Y++P+FH S+AWC+ D ++ P L +L I +F
Sbjct: 178 GHAHFLDLVAEVDRVMEEFDLSTFYQDPSFHISLAWCVGDARLQMEGPCLQELQGIVDEF 237
Query: 175 KLTSDESFHVVTHIHMKTGNKFYSFPL 201
+ + I K+GNKF+S PL
Sbjct: 238 EDSEMLLRAYAEQIRCKSGNKFFSMPL 264
>sp|Q6DEF6|USB1_DANRE Putative U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2
SV=1
Length = 276
Score = 137 bits (345), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLK--EELNSVGISVEVIPEPHL 59
D EHGGR+RSF H+R +WAT V+ P A L + K + I + V E HL
Sbjct: 73 DKSEEHGGRLRSFQHERGNWATYVFFPYDPEEAFLEVLNKMMAAAEAHDIPLTVSEEFHL 132
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLSKT+V+ +HWI V+++ +L H + ++++ N EKTR+F+ + ++
Sbjct: 133 SLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVSTGTPH 192
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATL-KPLLTKLDNIFTQFKLTS 178
L + + VD++ +EF L T+YE+P+FH S+AWC+ D+T L K L +L + +
Sbjct: 193 LLELSKIVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLLELQGLIDAHE--- 249
Query: 179 DESFHV---VTHIHMKTGNKFYSFPL 201
D FH + KTGNK + FPL
Sbjct: 250 DGPFHARLNCNELRCKTGNKVFVFPL 275
>sp|Q9BQ65|USB1_HUMAN Putative U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1 PE=1
SV=1
Length = 265
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 19/211 (9%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVG--ISVEVIPE 56
D+ +HGGR+R+FPH+R +WAT VY+P + L L +L V + ++V
Sbjct: 62 DDSTKHGGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKVF-- 119
Query: 57 PHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC 116
HLSLS+++V+ +HWI V+ L + +R N ++I+ N+EKTR+FI L S
Sbjct: 120 -HLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSG 178
Query: 117 KTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLK-PLLTKLDNIFTQFK 175
+V VD+ +EF L T+Y++P+FH S+AWC+ D L+ L +L I F
Sbjct: 179 HAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVDGF- 237
Query: 176 LTSDESFHVVTHIHM-----KTGNKFYSFPL 201
E V+ +H K+GNKF+S PL
Sbjct: 238 ----EDAEVLLRVHTEQVRCKSGNKFFSMPL 264
>sp|Q9VHB3|USB1_DROME Putative U6 snRNA phosphodiesterase OS=Drosophila melanogaster
GN=CG16790 PE=2 SV=1
Length = 258
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 7/204 (3%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEP--H 58
+D+P EHGGR+RSF H+R +WAT VY+P + +L E + + +E+ P H
Sbjct: 58 VDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEAIARLEPHLELQPNESLH 117
Query: 59 LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSC-K 117
LSLS+T+V+ YH ID +L + L + I+ NEE+TR+FIA ++
Sbjct: 118 LSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFV 177
Query: 118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLT 177
+T+I+Q +D+ +++L +Y+ +FH S+ WC+ D+ L LT+L +
Sbjct: 178 EKMTAILQPIDQVMLDYRLQQFYDPASFHVSLLWCVGDQETLLNEKLTELKELLDD---- 233
Query: 178 SDESFHVVTHIHMKTGNKFYSFPL 201
D+ V +H+K GNK +++ L
Sbjct: 234 QDKLCLAVNEVHLKCGNKDFTYSL 257
>sp|Q54W16|USB1_DICDI Putative U6 snRNA phosphodiesterase OS=Dictyostelium discoideum
GN=DDB_G0279967 PE=3 SV=1
Length = 275
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 NEHGGRIRSFPHQRNSWATLVYIPLQT----NLARLYAMLKEELNSVGISVEVIPEPHLS 60
+E + R F H ++ T +Y + T ++ L +KE N + I + H+S
Sbjct: 65 DETNKKTRLFEHVEGNYPTFIYFKVPTKSRNDIKELIEQVKEIGNEINIKQDTETCFHIS 124
Query: 61 LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFN-SIEIFCNEEKTRSFIALGAN-SCKT 118
+S+T I H I+T + L L++ + I+ + +F N+ ++R F+++ N S K+
Sbjct: 125 ISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPINQSFKS 184
Query: 119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCL 153
++ +++ +D FK P YY+ P H SI+W L
Sbjct: 185 NILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219
>sp|Q7SEZ0|USB1_NEUCR Putative U6 snRNA phosphodiesterase OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=usb1 PE=3 SV=2
Length = 364
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 54/252 (21%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYI-----------------PLQTNLARLYAMLKEEL 44
D+P+ H GR R PH +W + VYI LQT +A A +L
Sbjct: 103 DDPSLHQGRQRQVPHIPGNWPSHVYIDWDPSSGDRELLSSLVDKLQTRVA-AAAQRYPDL 161
Query: 45 NSVGISVEV------IPEP-HLSLSKTLVIPYHWIDTLVETLGNNLRH--LNRLTIKFN- 94
V IS + + +P H+SLS L + D ++ + LR ++ + F+
Sbjct: 162 EGVKISTALRDPELPVDKPLHISLSAPLTLTSKNKDAFLDDVTRALRSSGVSPFVVDFSG 221
Query: 95 SIEIFCNEEKTRSFIAL--------GANSCKTS----LTSIVQAVDKSAQEFKLPTYYEE 142
+ + +EE TRSF+ L G + +S LT+++Q +K+A+E+ P Y+
Sbjct: 222 GVNWYRSEESTRSFLVLRVREVQNTGMTTADSSPNPRLTTLLQRCNKTAKEYGQPPLYDS 281
Query: 143 PN----FHASIAWCLQDKTATLKPLLTKL---------DNIFTQFKLTSDESFHVVTHIH 189
+ FH +IAW + +LK L + +N+ + KL + SF V T +
Sbjct: 282 QDMGYRFHVTIAWTHARPSESLKQLTDSIFDDCKTMYSENMSIRDKLCTGSSFRVET-VK 340
Query: 190 MKTGNKFYSFPL 201
+K GN F L
Sbjct: 341 VKIGNHVTRFEL 352
>sp|O13915|USB1_SCHPO Putative U6 snRNA phosphodiesterase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usb1 PE=3 SV=2
Length = 265
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 23/221 (10%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVG------ISVEVI 54
D+P H GRIR H W Y+ + + ++ ++E LNS S +
Sbjct: 46 FDSPEFHEGRIRGQKHIEGLWFVQTYLEVDLS-KKVKKGIREFLNSQSRFQSLLCSEHNV 104
Query: 55 PEP-HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKF--NSIEIFCNEEKTRSFIAL 111
P HLS+S+ I Y + LV +LN T+KF + + N+EKTR F+A
Sbjct: 105 PRRLHLSISENYRINYSTKNQLVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLAF 164
Query: 112 GANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIA-----------WCLQDKTATL 160
+ ++ +EF E+ H S A W QD+ +
Sbjct: 165 ECKFSDENYKDLISHASDCMKEFTNRNLREDFLLHISFASSLTNEDEYQNWVSQDRESHF 224
Query: 161 KPLLTKLDNIFTQFKLTSDESFHVVTHIHMKTGNKFYSFPL 201
+ ++ N Q K ESF +V + + G+ ++FP
Sbjct: 225 FKTMNEIINTKIQ-KDQFSESF-IVDSLKLSIGHLIFTFPF 263
>sp|Q3ZBA7|FXL21_BOVIN F-box/LRR-repeat protein 21 OS=Bos taurus GN=FBXL21 PE=2 SV=1
Length = 434
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS 60
+D +E+ G+I +R SW L+ N+ + + +EE+ + E P HL
Sbjct: 263 IDVMSENAGQIEFHSIKRQSWDALIKHSPGVNVVMYFFLYEEEMET--FFKEETPVTHLY 320
Query: 61 LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI-----EIFCNEEKTRSFIALGANS 115
+++ ++ LG N L L + N I E+ C E ++ ALG +
Sbjct: 321 FGRSVS------KEILGRLGLNCPRLTELVVCANGIQVIDTELICIAEHCKNLTALGLSE 374
Query: 116 CKTSLTSIVQAVDKSAQEFKLPTYYEE 142
C+ S ++ ++ V ++ + EE
Sbjct: 375 CEVSCSAFIEFVRLCGRKLTHLSIMEE 401
>sp|B3FL73|FXL21_SHEEP F-box/LRR-repeat protein 21 OS=Ovis aries GN=Fbxl21 PE=1 SV=1
Length = 434
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS 60
+D +E+ G+I +R SW L+ N+ + + +EE+ + E P HL
Sbjct: 263 IDVVSENPGQIEFHSIKRQSWDALIKHSPGVNVVMYFFLYEEEMET--FFKEETPVTHLY 320
Query: 61 LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI-----EIFCNEEKTRSFIALGANS 115
+++ ++ L N L L + N I E+ C E ++ ALG +
Sbjct: 321 FGRSVS------KGILGRLSLNCPRLVELVVCANGIQVIDNELICIAEHCKNLTALGLSE 374
Query: 116 CKTSLTSIVQAV 127
C+ S T+ ++ V
Sbjct: 375 CEVSCTAFIEFV 386
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,845,697
Number of Sequences: 539616
Number of extensions: 2559714
Number of successful extensions: 6457
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6426
Number of HSP's gapped (non-prelim): 22
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)