Query psy16608
Match_columns 202
No_of_seqs 123 out of 303
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:18:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vgj_A Hypothetical protein PH 99.9 3.4E-23 1.2E-27 163.8 17.6 157 21-191 1-163 (184)
2 1iuh_A 2'-5' RNA ligase; riken 99.9 8.9E-22 3.1E-26 158.3 14.6 129 21-155 1-139 (198)
3 2vfk_A AKAP18 delta; APO, hydr 99.8 3.3E-19 1.1E-23 143.3 15.6 161 21-191 3-181 (205)
4 1jh6_A Cyclic phosphodiesteras 99.7 3.1E-17 1.1E-21 131.0 15.3 119 20-153 7-126 (189)
5 2d4g_A Hypothetical protein BS 99.7 1.5E-17 5.2E-22 129.8 12.0 147 22-191 2-151 (171)
6 2fsq_A ATU0111 protein; alpha- 97.7 0.0007 2.4E-08 55.6 13.3 115 34-158 53-192 (243)
7 2vfk_A AKAP18 delta; APO, hydr 90.3 2.3 7.8E-05 32.7 9.6 64 104-170 2-69 (205)
8 1jh6_A Cyclic phosphodiesteras 89.2 0.97 3.3E-05 34.8 6.6 59 102-171 5-64 (189)
9 1vgj_A Hypothetical protein PH 87.1 1.8 6.2E-05 32.6 6.9 62 106-171 2-65 (184)
10 1iuh_A 2'-5' RNA ligase; riken 86.8 1.8 6.2E-05 33.4 6.8 61 106-171 2-64 (198)
11 2d4g_A Hypothetical protein BS 79.7 2.2 7.7E-05 31.7 4.5 39 106-152 2-40 (171)
12 2i3e_A G-rich; rich protein, C 33.3 83 0.0028 24.8 5.5 98 52-157 61-164 (222)
13 2fsq_A ATU0111 protein; alpha- 29.6 69 0.0024 25.7 4.7 52 33-84 149-207 (243)
14 1wdd_S Ribulose bisphosphate c 26.9 50 0.0017 24.0 3.1 71 60-134 14-93 (128)
15 1c1y_B Proto-onkogene serine/t 24.9 59 0.002 21.4 2.9 35 98-140 7-41 (77)
16 3e6q_A Putative 5-carboxymethy 24.8 2E+02 0.007 20.9 7.0 95 55-151 21-127 (146)
17 3t5s_A Gilaa.00834.A, macropha 23.9 2E+02 0.0067 20.4 6.0 82 58-140 24-115 (135)
18 2xmi_A Cnpase, CNP, 2', 3'-cyc 23.6 55 0.0019 25.8 2.9 94 53-157 68-163 (221)
19 1otg_A 5-carboxymethyl-2-hydro 22.2 2E+02 0.007 20.0 5.9 32 58-89 2-34 (125)
20 1hc7_A Prolyl-tRNA synthetase; 21.8 2.4E+02 0.0084 24.5 7.2 76 62-137 103-193 (477)
21 1rrb_A RAF-1 RBD, RAF proto-on 21.4 99 0.0034 21.7 3.6 35 98-140 24-58 (107)
No 1
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.91 E-value=3.4e-23 Score=163.81 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=127.3
Q ss_pred cceEEEEecCCCHHHHHHHHHHHHHhhccc---c--ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCc
Q psy16608 21 WATLVYIPLQTNLARLYAMLKEELNSVGIS---V--EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNS 95 (202)
Q Consensus 21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~---~--~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~ 95 (202)
+|.|+.|.++. ++++.|.++++.+... . +.++++||||.|+|+++.++++.+.+.|++.++...||++++++
T Consensus 1 mR~Fial~~p~---~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~pf~l~l~g 77 (184)
T 1vgj_A 1 MRAFIAIDVNE---SVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKG 77 (184)
T ss_dssp CEEEEEEECCH---HHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHTTSBCEEEEEEE
T ss_pred CeEEEEEcCCH---HHHHHHHHHHHHHhhcCCCcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHHccCCCeEEEEee
Confidence 36777777765 8899999999988752 2 78999999999999999999999999999998889999999999
Q ss_pred eEEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhhhhcc
Q psy16608 96 IEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFK 175 (202)
Q Consensus 96 ~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~~~~~ 175 (202)
+|+|++..+|||+|+ +|.++ ..|..|++.|.+.+...|++.+. +|+||||||+...... . .++.+.++.+.
T Consensus 78 ~g~F~~~~~p~vl~~-~v~~~-~~L~~L~~~l~~~l~~~g~~~~~-~f~PHiTLar~~~~~~--~----~~~~~~~~~~~ 148 (184)
T 1vgj_A 78 IGVFPNPNYIRVIWA-GIEND-EIIREMAREIEDELAKLGFKKEG-NFVAHITLGRVKFVKD--K----LGLTMKLKELA 148 (184)
T ss_dssp EEEEECSSSEEEEEE-EEETC-HHHHHHHHHHHHHHHTTTCCCCC-CCCCEEEEEEEEEESC--H----HHHHHHHHHTT
T ss_pred EeeCCCCCCCcEEEE-EecCC-HHHHHHHHHHHHHHHHcCCCCCC-CccceEEEEeecccCc--H----HHHHHHHHHhc
Confidence 999999999999997 89775 78999999999999999998877 9999999998764332 0 12223333332
Q ss_pred cCCce-eecccceEEEe
Q psy16608 176 LTSDE-SFHVVTHIHMK 191 (202)
Q Consensus 176 ~~~~~-~~~~v~~v~~k 191 (202)
+... .+. |+++.+-
T Consensus 149 -~~~~~~~~-v~~~~L~ 163 (184)
T 1vgj_A 149 -NEDFGSFV-VDAIELK 163 (184)
T ss_dssp -TCEEEEEE-ECEEEEE
T ss_pred -CCCCCcEE-EeEEEEE
Confidence 2223 677 8888775
No 2
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.88 E-value=8.9e-22 Score=158.26 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=114.7
Q ss_pred cceEEEEecCCCHHHHHHHHHHHHHhhccc----cccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCce
Q psy16608 21 WATLVYIPLQTNLARLYAMLKEELNSVGIS----VEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSI 96 (202)
Q Consensus 21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~ 96 (202)
+|.|+.|.++. ++.+.|.++++.+... .+.++++||||.|+|+++.++++.+.+.|++.++...+|+|+++++
T Consensus 1 mRlFial~~p~---~~~~~l~~~~~~l~~~~~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~~~~pf~l~l~g~ 77 (198)
T 1iuh_A 1 MRLFYAVFLPE---EVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARLRGT 77 (198)
T ss_dssp CEEEEEEECCH---HHHHHHHHHHGGGTTCTTEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred CEEEEEEeCCH---HHHHHHHHHHHHhhhhcCCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHhccCCCeEEEEcce
Confidence 46777777765 8899999999988642 2788999999999999999999999999999888889999999999
Q ss_pred EEEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhc-C-----CCCCCCCCCceEEEEeecCC
Q psy16608 97 EIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEF-K-----LPTYYEEPNFHASIAWCLQD 155 (202)
Q Consensus 97 ~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~-g-----~~~~~~~~~pHiSia~~~~~ 155 (202)
|+|++.++|||+|+ +| +...|..|++.|.+.+... | ++.+.++|+||||||+....
T Consensus 78 g~F~~~~~p~vl~l-~v--~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~~~f~PHiTLar~~~~ 139 (198)
T 1iuh_A 78 GYFPNEGTPRVWFA-KA--EAEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKAP 139 (198)
T ss_dssp EEESSSSSCSEEEE-EE--ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESSC
T ss_pred EECCCCCCCCEEEE-EC--CCHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCcEEeEeccCc
Confidence 99999999999997 78 4578999999999999998 9 98888999999999997643
No 3
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.82 E-value=3.3e-19 Score=143.35 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=120.0
Q ss_pred cceEEEEecCCCHHHHHHHHHHHHHhhcc-------ccccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccC------C
Q psy16608 21 WATLVYIPLQTNLARLYAMLKEELNSVGI-------SVEVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHL------N 87 (202)
Q Consensus 21 w~tfi~i~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~------~ 87 (202)
+|.|++|+++. +++++.|.++++.+.. ..+.++++||||.|+|+++.++++.+.+.|++..... .
T Consensus 3 ~r~Fial~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (205)
T 2vfk_A 3 PNYFLSIPITN--KKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGK 80 (205)
T ss_dssp CCEEEEEECCC--HHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCEEEEEEcCC--HHHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57888888874 3688888888887742 2388999999999999999999999999888765544 8
Q ss_pred ceEEEeCceEEEecCCCceEEEEEeecCC--CccHHHHHHHHHHHHHhcCCC-CCCCCCCceEEEEeecCCCchhHHHHH
Q psy16608 88 RLTIKFNSIEIFCNEEKTRSFIALGANSC--KTSLTSIVQAVDKSAQEFKLP-TYYEEPNFHASIAWCLQDKTATLKPLL 164 (202)
Q Consensus 88 ~F~l~~~~~~~f~n~~~~RvF~~l~v~~~--~~~L~~L~~~i~~~l~~~g~~-~~~~~~~pHiSia~~~~~~~~~l~~~~ 164 (202)
||.|+++++|+|++ ||+|+ +|.++ .+.|..|++.|.+.+...|++ .++++|+||||||+........- ...
T Consensus 81 pf~l~l~g~~~F~~----~vl~~-~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTlar~~~~~~~~~-~~~ 154 (205)
T 2vfk_A 81 HLTLPFHGIGTFQG----QVGFV-KLADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTFMKLSKAPMLWK-KGV 154 (205)
T ss_dssp CCEEEEEEEEEETT----TEEEE-EECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEEEEGGGCHHHHH-TTC
T ss_pred CcEEEEechhhCCC----cEEEE-eecccccHHHHHHHHHHHHHHHHHcCCCcCCCCCcceEEEEEecccchhhhh-ccc
Confidence 99999999999997 69897 78764 267999999999999999994 57889999999999753210000 000
Q ss_pred HHH-HHhhhhcccCCce-eecccceEEEe
Q psy16608 165 TKL-DNIFTQFKLTSDE-SFHVVTHIHMK 191 (202)
Q Consensus 165 ~~l-~~~~~~~~~~~~~-~~~~v~~v~~k 191 (202)
..+ .+.++.+. +... .+. |++|.+-
T Consensus 155 ~~~~~~~l~~~~-~~~~~~~~-v~~i~L~ 181 (205)
T 2vfk_A 155 RKIEPGLYEQFI-DHRFGEEI-LYQIDLC 181 (205)
T ss_dssp SSCCGGGGGGGT-TCEEEEEE-CCEEEEE
T ss_pred cccCHHHHHHhc-CCcCcEEE-eCEEEEE
Confidence 112 13343333 2233 678 8999883
No 4
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.75 E-value=3.1e-17 Score=130.97 Aligned_cols=119 Identities=9% Similarity=0.043 Sum_probs=97.8
Q ss_pred ccceEEEEecCCCHHHHHHHHHHHHHhhcccc-ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEE
Q psy16608 20 SWATLVYIPLQTNLARLYAMLKEELNSVGISV-EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEI 98 (202)
Q Consensus 20 ~w~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~ 98 (202)
.-++|+.++ |. ++++.|.++++.++... ..+.++|||| +|+++.. .+.+.+.|++..+..+||.|+++++|+
T Consensus 7 ~~~~f~~~p-p~---~~~~~l~~~~~~l~~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a~~~~pf~l~l~g~g~ 79 (189)
T 1jh6_A 7 DVYSVWALP-DE---ESEPRFKKLMEALRSEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESACDGLKAYTATVDRVST 79 (189)
T ss_dssp EEEEEEEEE-CT---TTHHHHHHHHHHHHHHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHHHTCBCEEEEEEEEEE
T ss_pred CcEEEEEEC-CH---HHHHHHHHHHHHHHHHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHHhhCCCeEEEEcceec
Confidence 345666666 44 67788888888776543 6778999999 8999877 899999999988889999999999999
Q ss_pred EecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy16608 99 FCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCL 153 (202)
Q Consensus 99 f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~ 153 (202)
| ...+|++|+ +|.. ...|..|++.+++. +|+++. ++|.||||||+..
T Consensus 80 ~--~~~~rvlw~-~v~~-~~~L~~L~~~v~~~---~g~~~~-~~f~PHlTLar~~ 126 (189)
T 1jh6_A 80 G--TFFFQCVFL-LLQT-TPEVMEAGEHCKNH---FNCSTT-TPYMPHLSLLYAE 126 (189)
T ss_dssp E--EETTEEEEE-EECC-CHHHHHHHHHHHHH---TTCCCC-SCCCCEEEEECCC
T ss_pred c--CccceEEEE-eecC-CHHHHHHHHHHHHH---hCCCCC-CCCCCeEEEEEec
Confidence 4 568999996 8975 47899999999886 788764 6899999999864
No 5
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.74 E-value=1.5e-17 Score=129.82 Aligned_cols=147 Identities=15% Similarity=0.120 Sum_probs=109.1
Q ss_pred ceEEEEecCCCHHHHHHHHHHHHHhhcccc--ccCCCCeEeeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceEEE
Q psy16608 22 ATLVYIPLQTNLARLYAMLKEELNSVGISV--EVIPEPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIF 99 (202)
Q Consensus 22 ~tfi~i~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~lHISLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~~f 99 (202)
|.|+.|.++ +++.+.|.++++.+.... +.+ ||||.|+|+++.++++.+.+.|++.++...||.++++++|.|
T Consensus 2 R~Fiai~~~---~~~~~~l~~~~~~~~~~~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~g~F 75 (171)
T 2d4g_A 2 KYGIVLFPS---KKLQDLANSYRKRYDPSYSLIPP---HLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSF 75 (171)
T ss_dssp EEEEEBCCC---HHHHHHHHHHHHHHCGGGGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHHHTCCCEEEEEEEEEEC
T ss_pred eEEEEEeCC---HHHHHHHHHHHHHhCcccCCCCC---eEEeecCCcCChHHHHHHHHHHHHHHccCCCEEEEECCcEEe
Confidence 566666665 488999999999885433 444 999999999999999999999999988899999999999999
Q ss_pred ecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhhhhccc-CC
Q psy16608 100 CNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKL-TS 178 (202)
Q Consensus 100 ~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~~~~~~-~~ 178 (202)
+ .++.++|+ ++.. ...|..|++.+.+.+.. ..+.++|+||||||+.... +.+ .+.++.+.. ..
T Consensus 76 ~--~~~~vl~l-~~~~-~~~L~~L~~~l~~~~~~---~~~~~~f~PHiTLar~~~~--~~~-------~~~~~~~~~~~~ 139 (171)
T 2d4g_A 76 A--PVNNVIYI-KAEP-TEELKTLNEKLYTGVLA---GEQEYNFVPHVTVGQNLSD--DEH-------SDVLGQLKMQEV 139 (171)
T ss_dssp T--TTCCCEEE-EECC-CHHHHHHHHHTTSGGGC---SCCCSCCCCEEEEECSCCH--HHH-------HHHHHHHTTSCC
T ss_pred C--CCCcEEEE-EccC-ChHHHHHHHHHHhcccc---cccCCCCCCeEEeecCCCH--HHH-------HHHHHHhcCCCC
Confidence 7 11239886 7876 57899999999887655 3467789999999985421 222 223333210 11
Q ss_pred ceeecccceEEEe
Q psy16608 179 DESFHVVTHIHMK 191 (202)
Q Consensus 179 ~~~~~~v~~v~~k 191 (202)
+..+. |++|.+-
T Consensus 140 ~~~~~-v~~i~L~ 151 (171)
T 2d4g_A 140 SHEEI-VDRFHLL 151 (171)
T ss_dssp CEEEE-ECEEEEE
T ss_pred ceeEE-ECeEEEE
Confidence 34677 8888765
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=97.73 E-value=0.0007 Score=55.65 Aligned_cols=115 Identities=10% Similarity=0.127 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhcccc-------ccCCCCeEeeeeeec------------cC-cccHHHHHHHHHHhhcc---CCceE
Q psy16608 34 ARLYAMLKEELNSVGISV-------EVIPEPHLSLSKTLV------------IP-YHWIDTLVETLGNNLRH---LNRLT 90 (202)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~-------~~~~~lHISLs~~~~------------~~-~~~i~~~~~~L~~~l~~---~~~F~ 90 (202)
.+..+.+.++++++.... ..++.+|+||--... +. +..++..-+.+.+.++. ..+|.
T Consensus 53 s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~ 132 (243)
T 2fsq_A 53 SQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFN 132 (243)
T ss_dssp SHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCC
T ss_pred ChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHHHHHHhcccCCCCeE
Confidence 356677888888877543 888999999975433 11 22466655566666654 35677
Q ss_pred EEeCceEEEecCCCceEEEEEeecCCC-ccHHHHHHHHHHHHHhcCC-CCCCCCCCceEEEEeecCCCch
Q psy16608 91 IKFNSIEIFCNEEKTRSFIALGANSCK-TSLTSIVQAVDKSAQEFKL-PTYYEEPNFHASIAWCLQDKTA 158 (202)
Q Consensus 91 l~~~~~~~f~n~~~~RvF~~l~v~~~~-~~L~~L~~~i~~~l~~~g~-~~~~~~~~pHiSia~~~~~~~~ 158 (202)
+++.++ .+ .-+-+ .++.+.+ ..|..+-+.+.+ .+|+ .++...+.+|||||+......+
T Consensus 133 ~~v~~l--~~----~~v~L-~Pade~~~~~L~~~R~~l~q---~lGi~~p~hd~y~fHITLgY~~~~l~~ 192 (243)
T 2fsq_A 133 MRVTGL--RP----VGMVM-KGATAEDDSIVALWRDTFAD---FFGYRHPDHDTYEFHITLSYIVSWFEP 192 (243)
T ss_dssp EEEEEE--ET----TEEEE-EESSHHHHHHHHHHHHHHHH---HHTCCCTTGGGCCEEEECEEESSCBCG
T ss_pred EEEecc--cc----ceEEE-ecCCHHHHHHHHHHHHHHHH---HhCCCCCCCcceEEEEEEEeccCCCCH
Confidence 776666 11 12222 2443322 456666666665 5665 3345679999999987644443
No 7
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=90.27 E-value=2.3 Score=32.70 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=34.2
Q ss_pred CceEEEEEeecCCCccHHHHHHHHHHHHHh-c-CC-CCCCCCCCceEEEEeecCCC-chhHHHHHHHHHHh
Q psy16608 104 KTRSFIALGANSCKTSLTSIVQAVDKSAQE-F-KL-PTYYEEPNFHASIAWCLQDK-TATLKPLLTKLDNI 170 (202)
Q Consensus 104 ~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~-~-g~-~~~~~~~~pHiSia~~~~~~-~~~l~~~~~~l~~~ 170 (202)
+.|.|+++.+.. ..+..-+..+.+.+.. . ++ .....+..+||||+.. ++. .+.+.++...|+++
T Consensus 2 ~~r~Fial~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~fl-g~~~~~~~~~l~~~l~~~ 69 (205)
T 2vfk_A 2 QPNYFLSIPITN--KKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVM-QLLNEDEVNIGTDALLEL 69 (205)
T ss_dssp CCCEEEEEECCC--HHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEE-CCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCC--HHHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEE-EcCCHHHHHHHHHHHHHH
Confidence 479999987753 1344444444333321 1 22 2344567889999985 543 33344444444443
No 8
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=89.23 E-value=0.97 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCCceEEEEEeecCCC-ccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEeecCCCchhHHHHHHHHHHhh
Q psy16608 102 EEKTRSFIALGANSCK-TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIF 171 (202)
Q Consensus 102 ~~~~RvF~~l~v~~~~-~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~~~~~~~~l~~~~~~l~~~~ 171 (202)
+...|.||++. .... +.|..+.+.+.+ .++. .++.||||| .|+.....++..+.|.++.
T Consensus 5 ~~~~~~f~~~p-p~~~~~~l~~~~~~l~~---~~~~----~~~~~HiTL---lG~~~~~~~~l~~~L~~~a 64 (189)
T 1jh6_A 5 KKDVYSVWALP-DEESEPRFKKLMEALRS---EFTG----PRFVPHVTV---AVSAYLTADEAKKMFESAC 64 (189)
T ss_dssp CCEEEEEEEEE-CTTTHHHHHHHHHHHHH---HHTC----CCCCCCEEE---EEEEEECHHHHHHHHHHHH
T ss_pred CCCcEEEEEEC-CHHHHHHHHHHHHHHHH---HcCC----CCCCCEEEE---eCCCCCCHHHHHHHHHHHH
Confidence 45568999875 2221 334444444433 3443 447999999 3554433443334444443
No 9
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=87.13 E-value=1.8 Score=32.59 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=31.7
Q ss_pred eEEEEEeecCCCccHHHHHHHHHHHHHhcCC-CCCCCCCCceEEEEeecCCCc-hhHHHHHHHHHHhh
Q psy16608 106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKL-PTYYEEPNFHASIAWCLQDKT-ATLKPLLTKLDNIF 171 (202)
Q Consensus 106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~-~~~~~~~~pHiSia~~~~~~~-~~l~~~~~~l~~~~ 171 (202)
|.|+++.+.. .+...+..+.+.+.+.+. .....+..+||||+.. |+.. +.+.++.+.|+++.
T Consensus 2 R~Fial~~p~---~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~fl-g~~~~~~~~~l~~~l~~~~ 65 (184)
T 1vgj_A 2 RAFIAIDVNE---SVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFL-GEITEEQAEEIKNILKKIA 65 (184)
T ss_dssp EEEEEEECCH---HHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEE-ESCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCH---HHHHHHHHHHHHHhhcCCCcEecCccccEEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence 8999986643 344444444444433221 1122345669999985 4433 33443444444443
No 10
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=86.82 E-value=1.8 Score=33.36 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=31.3
Q ss_pred eEEEEEeecCCCccHHHHHHHHHHHHHhcCCC-CCCCCCCceEEEEeecCCC-chhHHHHHHHHHHhh
Q psy16608 106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKLP-TYYEEPNFHASIAWCLQDK-TATLKPLLTKLDNIF 171 (202)
Q Consensus 106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~-~~~~~~~pHiSia~~~~~~-~~~l~~~~~~l~~~~ 171 (202)
|.|+++.+.. .+...+..+.+.+.+ ++. ....+..+||||+.. ++. .+.+.+..+.|+++.
T Consensus 2 RlFial~~p~---~~~~~l~~~~~~l~~-~~~~r~v~~~~~HiTL~fl-gev~~~~~~~l~~~l~~~~ 64 (198)
T 1iuh_A 2 RLFYAVFLPE---EVRAALVEAQTKVRP-FRGWKPVPPHQLHLTLLFL-GERPEEELPDYLALGHRLA 64 (198)
T ss_dssp EEEEEEECCH---HHHHHHHHHHGGGTT-CTTEEECCGGGCEEEEEEE-EECCGGGHHHHHHHHHHHH
T ss_pred EEEEEEeCCH---HHHHHHHHHHHHhhh-hcCCcccCCCCCEEEEEeC-CcCCHHHHHHHHHHHHHHh
Confidence 8999976643 344444444333332 111 122345799999974 443 233444444444443
No 11
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=79.68 E-value=2.2 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy16608 106 RSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWC 152 (202)
Q Consensus 106 RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~~~~~pHiSia~~ 152 (202)
|.|+++.+.. .+...+..+.+.+.. .++.-.|||||+..
T Consensus 2 R~Fiai~~~~---~~~~~l~~~~~~~~~-----~~~~v~pHiTL~f~ 40 (171)
T 2d4g_A 2 KYGIVLFPSK---KLQDLANSYRKRYDP-----SYSLIPPHLTLRAS 40 (171)
T ss_dssp EEEEEBCCCH---HHHHHHHHHHHHHCG-----GGGTSCSCBCCSSC
T ss_pred eEEEEEeCCH---HHHHHHHHHHHHhCc-----ccCCCCCeEEeecC
Confidence 8899875533 344444444333321 23344559999963
No 12
>2i3e_A G-rich; rich protein, CNP, 2',3'-cyclic-nucleotide 3'- phosphodiesterase, nerve regeneration, hydrolase; NMR {Carassius auratus}
Probab=33.27 E-value=83 Score=24.76 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=53.1
Q ss_pred ccCCCCeEeeeeeeccCcccHHHHH--HHHHHhhccCCceEEEeCceEEEecCCCceEEEEEeecCCCccHHHHHHHHHH
Q psy16608 52 EVIPEPHLSLSKTLVIPYHWIDTLV--ETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDK 129 (202)
Q Consensus 52 ~~~~~lHISLs~~~~~~~~~i~~~~--~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~ 129 (202)
..|..+|.|-+|..+=...=-++.. +.+++.. -+.|+|++.++-+ .||+|=| .|.=..++|.-.-+..++
T Consensus 61 ~~pg~lHCTtkfcdyGka~GAeeYa~~~vVk~sy--gk~ftL~i~~l~v-----TprT~GA-RV~Lte~Ql~LWp~d~dk 132 (222)
T 2i3e_A 61 QNPLQLHCTTKFCDYGKAEGAKEYAELQVVKESL--TKSYELSVTALIV-----TPRTFGA-RVALTEAQVKLWPEGADK 132 (222)
T ss_dssp BCCSSCEEEEEECCSSSCHHHHHHHTCHHHHHGG--GCEEEEEEEEEEE-----CSSEEEE-EEECCHHHHHTSCTGGGG
T ss_pred CCCCCceeeeeecccCCCcchHHHHHHHHHHHhh--cceeEEEEEEEEe-----cccccce-EEEccHhhhhhCCCCccc
Confidence 6778999999998874432212221 2233332 3678888877633 5788777 675433334211111222
Q ss_pred H-HHhcC---CCCCCCCCCceEEEEeecCCCc
Q psy16608 130 S-AQEFK---LPTYYEEPNFHASIAWCLQDKT 157 (202)
Q Consensus 130 ~-l~~~g---~~~~~~~~~pHiSia~~~~~~~ 157 (202)
. +.+-+ -+...+-.+.|||||.+.+-+.
T Consensus 133 ~~v~p~~~p~~~slp~GsRAHiTLGCAagV~~ 164 (222)
T 2i3e_A 133 EGVAPALLPSVEALPAGSRAHVTLGCSAGVET 164 (222)
T ss_dssp SSSCGGGHHHHTTSCCCSSEEEEEEECSSCCT
T ss_pred cccccCCCCCCCCCCCCceeeEeeeccCCCCc
Confidence 0 10000 1223344689999999876553
No 13
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=29.60 E-value=69 Score=25.74 Aligned_cols=52 Identities=13% Similarity=-0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhccccc--c----CCCCeEeeeeeeccCc-ccHHHHHHHHHHhhc
Q psy16608 33 LARLYAMLKEELNSVGISVE--V----IPEPHLSLSKTLVIPY-HWIDTLVETLGNNLR 84 (202)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~--~----~~~lHISLs~~~~~~~-~~i~~~~~~L~~~l~ 84 (202)
+++-.+.|.++-+.+.+.++ . .=-+||||.+.+..-. ++.+.+...+++...
T Consensus 149 de~~~~~L~~~R~~l~q~lGi~~p~hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~~ 207 (243)
T 2fsq_A 149 TAEDDSIVALWRDTFADFFGYRHPDHDTYEFHITLSYIVSWFEPECLPRWQAMLDEELE 207 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCTTGGGCCEEEECEEESSCBCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCcceEEEEEEEeccCCCCHHHHHHHHHHHHHHHH
Confidence 44445556666555554432 2 2359999999886655 466666666655443
No 14
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=26.86 E-value=50 Score=23.98 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=43.9
Q ss_pred eeeeeeccCcccHHHHHHHHHHhhccCCceEEEeCceE-EEecCC--------CceEEEEEeecCCCccHHHHHHHHHHH
Q psy16608 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIE-IFCNEE--------KTRSFIALGANSCKTSLTSIVQAVDKS 130 (202)
Q Consensus 60 SLs~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~-~f~n~~--------~~RvF~~l~v~~~~~~L~~L~~~i~~~ 130 (202)
|+||+-+++++|| .++++-.+++-=...|++..-+ +|.+.. +-=..|.++.= +...-...+..|++|
T Consensus 14 tfSyLP~lt~eqI---~kQI~Yll~qGw~p~lEf~d~~~~~R~~~~~~~~~~~~yW~mWkLPmF-g~td~~~Vl~El~~C 89 (128)
T 1wdd_S 14 TLSYLPPLTVEDL---LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMF-GCTDATQVLKELEEA 89 (128)
T ss_dssp TTTTSSCCCHHHH---HHHHHHHHHTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCCCT-TCCCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHH---HHHHHHHHHCCCeeeEEecCCCceeeccCCCCCcccCCcccccCccCc-cCCCHHHHHHHHHHH
Confidence 5788888887765 4455555555444567765444 454411 22244554442 345678888999999
Q ss_pred HHhc
Q psy16608 131 AQEF 134 (202)
Q Consensus 131 l~~~ 134 (202)
.+++
T Consensus 90 ~k~~ 93 (128)
T 1wdd_S 90 KKAY 93 (128)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 9986
No 15
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=24.94 E-value=59 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.0
Q ss_pred EEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy16608 98 IFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYY 140 (202)
Q Consensus 98 ~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~ 140 (202)
.+||..+|.| .|..|. .+.+++.++|+.-|+.++-
T Consensus 7 hLPn~QrT~V----~VrpG~----tlrdaL~KaLk~R~L~pe~ 41 (77)
T 1c1y_B 7 FLPNKQRTVV----NVRNGM----SLHDCLMKALKVRGLQPEC 41 (77)
T ss_dssp EETTTEEEEE----ECCTTC----BHHHHHHHHHHTTTCCGGG
T ss_pred ECCCCceEEE----EecCCc----CHHHHHHHHHHHcCCCHHH
Confidence 5788888877 677763 3788999999998886654
No 16
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=24.77 E-value=2e+02 Score=20.91 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCCeEeeeeeeccC-cccHHHHHHHHHHhhccCCce-----EEEeCceE--EEecCCCceEEEEEe--ecCCC--ccHHH
Q psy16608 55 PEPHLSLSKTLVIP-YHWIDTLVETLGNNLRHLNRL-----TIKFNSIE--IFCNEEKTRSFIALG--ANSCK--TSLTS 122 (202)
Q Consensus 55 ~~lHISLs~~~~~~-~~~i~~~~~~L~~~l~~~~~F-----~l~~~~~~--~f~n~~~~RvF~~l~--v~~~~--~~L~~ 122 (202)
.=-|+++-.+-++. ...++.|.+.|.+++-+..-| ...+-... ..+..+.++.|.-+. +-.|. ++-+.
T Consensus 21 ~MPHi~IEYS~nl~~~~d~~~l~~~vh~al~~~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~ 100 (146)
T 3e6q_A 21 GMPHLVIEATANLRLETSPGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQA 100 (146)
T ss_dssp CCCEEEEEEETTCEESSCHHHHHHHHHHHHHHTTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHH
T ss_pred CCCeEEEEECCCcccccCHHHHHHHHHHHHHhcCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHH
Confidence 34699999999998 459999999999887542222 22222111 222333345555433 33333 56778
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy16608 123 IVQAVDKSAQEFKLPTYYEEPNFHASIAW 151 (202)
Q Consensus 123 L~~~i~~~l~~~g~~~~~~~~~pHiSia~ 151 (202)
|.+.|-+++.+.--++.. ...++|+.-
T Consensus 101 L~e~v~~al~~~l~~~~~--~~~~lsVeI 127 (146)
T 3e6q_A 101 LGESLCEVLAGAVAGGGE--EGVQVSVEV 127 (146)
T ss_dssp HHHHHHHHHHHHEEECSS--SCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCccC--CceEEEEEE
Confidence 888888877665322221 345666664
No 17
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=23.92 E-value=2e+02 Score=20.43 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=46.8
Q ss_pred eEeeeeeeccCcccHHHHHHHHHHhhcc----CCc---eEEEeCceEEEecCCCceEEEEEeecCCC--ccHHHHHHHHH
Q psy16608 58 HLSLSKTLVIPYHWIDTLVETLGNNLRH----LNR---LTIKFNSIEIFCNEEKTRSFIALGANSCK--TSLTSIVQAVD 128 (202)
Q Consensus 58 HISLs~~~~~~~~~i~~~~~~L~~~l~~----~~~---F~l~~~~~~~f~n~~~~RvF~~l~v~~~~--~~L~~L~~~i~ 128 (202)
.|.++=+...+.++.+.|.+.+.+.+.. ... ..+. +..=+|.....|-++.-+..-++. ++-..+.+.|-
T Consensus 24 ~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~~~s~~i~ 102 (135)
T 3t5s_A 24 CAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNPSISAAIT 102 (135)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCHHHHHHHH
T ss_pred eEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCchHHHHHH
Confidence 4444444555555667777777666543 222 3444 433367766778777655433322 44567777777
Q ss_pred HHH-HhcCCCCCC
Q psy16608 129 KSA-QEFKLPTYY 140 (202)
Q Consensus 129 ~~l-~~~g~~~~~ 140 (202)
+.| +.+|.|+++
T Consensus 103 ~~l~~~Lgi~~~r 115 (135)
T 3t5s_A 103 GCLTQHFKVKPER 115 (135)
T ss_dssp HHHHHHHCCCGGG
T ss_pred HHHHHhcccCccE
Confidence 766 458888754
No 18
>2xmi_A Cnpase, CNP, 2', 3'-cyclic-nucleotide 3'-phosphodiesterase; hydrolase, myelin; HET: FLC; 1.74A {Mus musculus} PDB: 2y1p_A* 2y3x_A 2ydb_A* 2ydc_A* 2ydd_A* 2ilx_A 1woj_A
Probab=23.60 E-value=55 Score=25.76 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=51.5
Q ss_pred cCCCCeEeeeeeeccCcccHHHHH--HHHHHhhccCCceEEEeCceEEEecCCCceEEEEEeecCCCccHHHHHHHHHHH
Q psy16608 53 VIPEPHLSLSKTLVIPYHWIDTLV--ETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTSIVQAVDKS 130 (202)
Q Consensus 53 ~~~~lHISLs~~~~~~~~~i~~~~--~~L~~~l~~~~~F~l~~~~~~~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~ 130 (202)
.|..+|.|-+|..+=...=-++.. +.+++.. -+.|+|++.++-+ .||+|=| .|.=..++|.-.-...+++
T Consensus 68 ~p~vlHCTtkfcdyGka~GAeeYa~~~~Vk~sy--gk~ftl~i~~l~v-----TprT~GA-rV~Lte~Ql~LWp~d~~kv 139 (221)
T 2xmi_A 68 PPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSY--GKAFKLSISALFV-----TPKTAGA-QVVLTDQELQLWPSDLDKP 139 (221)
T ss_dssp CSSCCEEEEEECGGGTSTTHHHHHTCHHHHHHT--TCEEEEEEEEEEE-----CSSEEEE-EEECCHHHHTTSCCCSSCC
T ss_pred CCCCceehhhhcccCCCcchHHHHHHHHHHHhh--cceeEEEEEEEEe-----cccccce-EEEccHhhhhcCCCccccc
Confidence 466799999998774433222222 2233332 4678888877633 4788776 6743223331111112222
Q ss_pred HHhcCCCCCCCCCCceEEEEeecCCCc
Q psy16608 131 AQEFKLPTYYEEPNFHASIAWCLQDKT 157 (202)
Q Consensus 131 l~~~g~~~~~~~~~pHiSia~~~~~~~ 157 (202)
+..-.+| +-.+.|||||.+.+-+.
T Consensus 140 ~~~d~lp---~GsRAHiTLGCaagV~~ 163 (221)
T 2xmi_A 140 SASEGLP---PGSRAHVTLGCAADVQP 163 (221)
T ss_dssp GGGTTSC---TTTTCEEEEEECTTCCT
T ss_pred CccccCC---CCceeeEeeeccCCCCc
Confidence 2222222 34689999999866553
No 19
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=22.22 E-value=2e+02 Score=20.00 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=26.2
Q ss_pred eEeeeeeeccCc-ccHHHHHHHHHHhhccCCce
Q psy16608 58 HLSLSKTLVIPY-HWIDTLVETLGNNLRHLNRL 89 (202)
Q Consensus 58 HISLs~~~~~~~-~~i~~~~~~L~~~l~~~~~F 89 (202)
|+++-.+.++.. ..++.+.+.|.+++.....|
T Consensus 2 H~~ieyS~nl~~~~~~~~L~~~lh~~l~~~~~f 34 (125)
T 1otg_A 2 HFIVECSDNIREEADLPGLFAKVNPTLAATGIF 34 (125)
T ss_dssp EEEEEEEGGGHHHHTHHHHHHHHHHHHHTTSSS
T ss_pred eEEEEeCCCcccccCHHHHHHHHHHHHHHcCCC
Confidence 999999999986 58999999999887654333
No 20
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=21.84 E-value=2.4e+02 Score=24.54 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=51.3
Q ss_pred eeeeccCcccHHHHHHHHHHhhccCCceEEEeCceE-EEecCCCc------eEEEEEeecC-CC------ccHHHHHHHH
Q psy16608 62 SKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIE-IFCNEEKT------RSFIALGANS-CK------TSLTSIVQAV 127 (202)
Q Consensus 62 s~~~~~~~~~i~~~~~~L~~~l~~~~~F~l~~~~~~-~f~n~~~~------RvF~~l~v~~-~~------~~L~~L~~~i 127 (202)
.....++...-..+....++.+.+.+...+.+..++ +|.++.+| |=|+..++.. +. ..+..+++..
T Consensus 103 ~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~ 182 (477)
T 1hc7_A 103 EEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIY 182 (477)
T ss_dssp EEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHH
Confidence 456778887767788778777766555666666554 78888555 4477656643 21 2355566667
Q ss_pred HHHH-HhcCCC
Q psy16608 128 DKSA-QEFKLP 137 (202)
Q Consensus 128 ~~~l-~~~g~~ 137 (202)
.+.+ ..+|++
T Consensus 183 ~~i~~~~Lgl~ 193 (477)
T 1hc7_A 183 ARLAREYAAIP 193 (477)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhcCCe
Confidence 8899 789997
No 21
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=21.43 E-value=99 Score=21.67 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.3
Q ss_pred EEecCCCceEEEEEeecCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy16608 98 IFCNEEKTRSFIALGANSCKTSLTSIVQAVDKSAQEFKLPTYY 140 (202)
Q Consensus 98 ~f~n~~~~RvF~~l~v~~~~~~L~~L~~~i~~~l~~~g~~~~~ 140 (202)
.+||..+|.| +|..|. .|.+++.++|+.-|+.++-
T Consensus 24 hLPNqQrT~V----~VrpG~----tlrdaL~KaLk~R~L~pe~ 58 (107)
T 1rrb_A 24 FLPNKQRTVV----NVRNGM----SLHDCLMKALKVRGLQPEC 58 (107)
T ss_dssp ECTTTCCEEE----ECCTTC----BHHHHHHHHHHHHTCCTTT
T ss_pred ECCCCCeEEE----EecCCc----CHHHHHHHHHHHcCCCHHH
Confidence 5788888887 787773 3788999999998886554
Done!