Your job contains 1 sequence.
>psy16608
MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLS
LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSL
TSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDKTATLKPLLTKLDNIFTQFKLTSDE
SFHVVTHIHMKTGNKFYSFPLT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16608
(202 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NE74 - symbol:USB1 "Uncharacterized protein" ... 344 2.6e-31 1
RGD|1305215 - symbol:Usb1 "U6 snRNA biogenesis 1" species... 340 6.9e-31 1
MGI|MGI:2142454 - symbol:Usb1 "U6 snRNA biogenesis 1" spe... 336 1.8e-30 1
ZFIN|ZDB-GENE-040801-197 - symbol:usb1 "U6 snRNA biogenes... 328 1.3e-29 1
UNIPROTKB|Q9BQ65 - symbol:USB1 "Putative U6 snRNA phospho... 322 5.6e-29 1
UNIPROTKB|Q0II50 - symbol:USB1 "Putative U6 snRNA phospho... 321 7.1e-29 1
FB|FBgn0037713 - symbol:CG16790 species:7227 "Drosophila ... 301 9.4e-27 1
UNIPROTKB|F1RFS6 - symbol:USB1 "Uncharacterized protein" ... 239 3.5e-20 1
TAIR|locus:2176162 - symbol:AT5G51170 "AT5G51170" species... 153 1.7e-15 2
DICTYBASE|DDB_G0279967 - symbol:DDB_G0279967 "UPF0406 fam... 186 1.4e-14 1
POMBASE|SPAC23C11.10 - symbol:mpn1 "mitochondrial respira... 117 2.9e-05 1
>UNIPROTKB|F1NE74 [details] [associations]
symbol:USB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0034477 "U6 snRNA 3'-end processing"
evidence=IEA] Pfam:PF09749 GeneTree:ENSGT00390000004596 OMA:FHLSLAW
InterPro:IPR019146 PANTHER:PTHR13522 EMBL:AADN02065746
EMBL:AADN02065747 IPI:IPI00574691 Ensembl:ENSGALT00000001326
Uniprot:F1NE74
Length = 256
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 71/204 (34%), Positives = 112/204 (54%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN--LARLYAMLKEELNSVGISVEVIPEPHL 59
D+ + HGGR+R FPH+R WAT VY+P Q L +L + SV + E H+
Sbjct: 53 DDSSRHGGRVRCFPHERGGWATHVYLPYQAQEEFLELLELLASHARTYVPSVTAMEEFHV 112
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLS+++V+ YHWI +++L L +R + ++++ N+ KTR+F+ L ++
Sbjct: 113 SLSQSVVLRYHWISPFMQSLKERLAAFHRFFCVADRVKVYTNQNKTRTFVGLEVSTGHFQ 172
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLTS 178
L +V VDK +E+ LP +Y++P+FH S+AWC+ D +I +F+ S
Sbjct: 173 LLELVSEVDKVMEEYDLPVFYKDPSFHISMAWCVGDLRGSLEGQCLQELQDIVDRFE-DS 231
Query: 179 DESFHVV-THIHMKTGNKFYSFPL 201
V I K+GNKF+SFPL
Sbjct: 232 ARILRVQWEQIRCKSGNKFFSFPL 255
>RGD|1305215 [details] [associations]
symbol:Usb1 "U6 snRNA biogenesis 1" species:10116 "Rattus
norvegicus" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=ISO;ISS] [GO:0034477 "U6 snRNA 3'-end processing"
evidence=ISO;ISS] Pfam:PF09749 RGD:1305215 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0090305 GO:GO:0004518 CTD:79650
eggNOG:NOG251744 GeneTree:ENSGT00390000004596 HOGENOM:HOG000047515
HOVERGEN:HBG081315 OMA:FHLSLAW OrthoDB:EOG4CVG84 GO:GO:0034477
HAMAP:MF_03040 InterPro:IPR019146 PANTHER:PTHR13522 EMBL:BC088280
IPI:IPI00359057 RefSeq:NP_001014035.1 UniGene:Rn.95149
Ensembl:ENSRNOT00000017960 GeneID:307643 KEGG:rno:307643
UCSC:RGD:1305215 InParanoid:Q5I0I5 NextBio:657695
Genevestigator:Q5I0I5 Uniprot:Q5I0I5
Length = 267
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 72/204 (35%), Positives = 111/204 (54%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN--LARLYAMLKEELNSVGISVEVIPEPHL 59
D+ HGGRIR+FPH+R +WAT +YIP + N L +L + + E HL
Sbjct: 64 DDSARHGGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRLVQMEEFHL 123
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLS+++V+ +HWI V+ L + + R N ++I+ N+EKTR+FI L +S
Sbjct: 124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLTS 178
+V VD+ +EF L T+Y++P+FH S+AWC+ D I +F+ S
Sbjct: 184 FLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDEFE-DS 242
Query: 179 DESFHVVTH-IHMKTGNKFYSFPL 201
+ V+ + K+GNKF+S PL
Sbjct: 243 EMLLRVLAEQVRCKSGNKFFSMPL 266
>MGI|MGI:2142454 [details] [associations]
symbol:Usb1 "U6 snRNA biogenesis 1" species:10090 "Mus
musculus" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0034477 "U6 snRNA 3'-end
processing" evidence=ISO] Pfam:PF09749 MGI:MGI:2142454
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0090305
GO:GO:0004518 CTD:79650 eggNOG:NOG251744
GeneTree:ENSGT00390000004596 HOGENOM:HOG000047515
HOVERGEN:HBG081315 OrthoDB:EOG4CVG84 GO:GO:0034477 HAMAP:MF_03040
InterPro:IPR019146 PANTHER:PTHR13522 EMBL:AK135527 EMBL:AK160901
EMBL:AK168683 EMBL:BC016418 IPI:IPI00127404 RefSeq:NP_598715.2
UniGene:Mm.29069 ProteinModelPortal:Q91W78 PhosphoSite:Q91W78
PRIDE:Q91W78 Ensembl:ENSMUST00000034245 GeneID:101985
KEGG:mmu:101985 UCSC:uc009myg.2 InParanoid:Q91W78 NextBio:355218
Bgee:Q91W78 CleanEx:MM_AA960436 Genevestigator:Q91W78
Uniprot:Q91W78
Length = 267
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 70/204 (34%), Positives = 114/204 (55%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQT--NLARLYAMLKEELNSVGISVEVIPEPHL 59
D+ +HGGRIR+FPH+R +WAT +YIP + + L L + ++ E H+
Sbjct: 64 DDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHV 123
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLS+++V+ +HWI V+ L + + R N ++I+ N+EKTR+FI L +S
Sbjct: 124 SLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQ 183
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLTS 178
+V VD++ +EF L T+Y++P+FH S+AWC+ D I +F+ S
Sbjct: 184 FLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQCLQELQEIVDEFE-DS 242
Query: 179 DESFHVVTH-IHMKTGNKFYSFPL 201
+ V+ + + K+GNKF+S PL
Sbjct: 243 EMLLRVLANQVRCKSGNKFFSMPL 266
>ZFIN|ZDB-GENE-040801-197 [details] [associations]
symbol:usb1 "U6 snRNA biogenesis 1" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] Pfam:PF09749
ZFIN:ZDB-GENE-040801-197 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0090305 GO:GO:0004518 CTD:79650 eggNOG:NOG251744
GeneTree:ENSGT00390000004596 HOGENOM:HOG000047515
HOVERGEN:HBG081315 OrthoDB:EOG4CVG84 HAMAP:MF_03040
InterPro:IPR019146 PANTHER:PTHR13522 EMBL:BC077163 IPI:IPI00865833
RefSeq:NP_001003460.1 UniGene:Dr.84507 STRING:Q6DEF6
Ensembl:ENSDART00000007029 GeneID:445066 KEGG:dre:445066
InParanoid:Q6DEF6 NextBio:20831829 ArrayExpress:Q6DEF6 Bgee:Q6DEF6
Uniprot:Q6DEF6
Length = 276
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 70/205 (34%), Positives = 107/205 (52%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLK--EELNSVGISVEVIPEPHL 59
D EHGGR+RSF H+R +WAT V+ P A L + K + I + V E HL
Sbjct: 73 DKSEEHGGRLRSFQHERGNWATYVFFPYDPEEAFLEVLNKMMAAAEAHDIPLTVSEEFHL 132
Query: 60 SLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTS 119
SLSKT+V+ +HWI V+++ +L H + ++++ N EKTR+F+ + ++
Sbjct: 133 SLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVSTGTPH 192
Query: 120 LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXXXXXXDNIFTQFKLTSD 179
L + + VD++ +EF L T+YE+P+FH S+AWC+ D + D
Sbjct: 193 LLELSKIVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLL--ELQGLIDAHED 250
Query: 180 ESFHV---VTHIHMKTGNKFYSFPL 201
FH + KTGNK + FPL
Sbjct: 251 GPFHARLNCNELRCKTGNKVFVFPL 275
>UNIPROTKB|Q9BQ65 [details] [associations]
symbol:USB1 "Putative U6 snRNA phosphodiesterase"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IMP] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IDA] [GO:0034477 "U6 snRNA 3'-end processing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] Pfam:PF09749
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0090305
GO:GO:0004518 EMBL:AC010543 Orphanet:1775 CTD:79650
eggNOG:NOG251744 HOVERGEN:HBG081315 OMA:FHLSLAW OrthoDB:EOG4CVG84
GO:GO:0034477 HAMAP:MF_03040 InterPro:IPR019146 PANTHER:PTHR13522
EMBL:AK023216 EMBL:AK301494 EMBL:AK303121 EMBL:AC012182
EMBL:BC004415 EMBL:BC006291 EMBL:BC007774 EMBL:BC010099
EMBL:BC021554 IPI:IPI00304431 IPI:IPI00641878 IPI:IPI01008741
RefSeq:NP_001182231.1 RefSeq:NP_001191840.1 RefSeq:NP_078874.2
UniGene:Hs.408702 ProteinModelPortal:Q9BQ65 IntAct:Q9BQ65
MINT:MINT-1184765 STRING:Q9BQ65 PhosphoSite:Q9BQ65 DMDM:74732815
PaxDb:Q9BQ65 PRIDE:Q9BQ65 DNASU:79650 Ensembl:ENST00000219281
Ensembl:ENST00000423271 Ensembl:ENST00000539737 GeneID:79650
KEGG:hsa:79650 UCSC:uc002emz.3 GeneCards:GC16P058033
H-InvDB:HIX0019615 HGNC:HGNC:25792 HPA:HPA041791 MIM:604173
MIM:613276 neXtProt:NX_Q9BQ65 Orphanet:221046 PharmGKB:PA143485394
HOGENOM:HOG000213585 InParanoid:Q9BQ65 PhylomeDB:Q9BQ65
ChiTaRS:C16orf57 GenomeRNAi:79650 NextBio:68808 ArrayExpress:Q9BQ65
Bgee:Q9BQ65 CleanEx:HS_C16orf57 Genevestigator:Q9BQ65
Uniprot:Q9BQ65
Length = 265
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 72/205 (35%), Positives = 110/205 (53%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVGISVEVIPEPH 58
D+ +HGGR+R+FPH+R +WAT VY+P + L L +L V V + H
Sbjct: 62 DDSTKHGGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRM-KVFH 120
Query: 59 LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKT 118
LSLS+++V+ +HWI V+ L + +R N ++I+ N+EKTR+FI L S
Sbjct: 121 LSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSGHA 180
Query: 119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKLT 177
+V VD+ +EF L T+Y++P+FH S+AWC+ D I F+
Sbjct: 181 QFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVDGFE-D 239
Query: 178 SDESFHVVTH-IHMKTGNKFYSFPL 201
++ V T + K+GNKF+S PL
Sbjct: 240 AEVLLRVHTEQVRCKSGNKFFSMPL 264
>UNIPROTKB|Q0II50 [details] [associations]
symbol:USB1 "Putative U6 snRNA phosphodiesterase"
species:9913 "Bos taurus" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0034477 "U6
snRNA 3'-end processing" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
Pfam:PF09749 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0090305 GO:GO:0004518 EMBL:BC122807 IPI:IPI00693025
RefSeq:NP_001068945.1 UniGene:Bt.11459 Ensembl:ENSBTAT00000020923
GeneID:510934 KEGG:bta:510934 CTD:79650 eggNOG:NOG251744
GeneTree:ENSGT00390000004596 HOGENOM:HOG000047515
HOVERGEN:HBG081315 InParanoid:Q0II50 OMA:FHLSLAW OrthoDB:EOG4CVG84
NextBio:20869691 GO:GO:0034477 HAMAP:MF_03040 InterPro:IPR019146
PANTHER:PTHR13522 Uniprot:Q0II50
Length = 265
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 71/205 (34%), Positives = 111/205 (54%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTN---LARLYAMLKEELNSVGISVEVIPEP 57
+D+ +HGGR+R+FPH+R +WAT VYIP + L L A+L V V +
Sbjct: 61 VDDSAKHGGRVRTFPHERGNWATHVYIPYEAREEFLDLLDALLCHAQTYVPRLVRM-EAF 119
Query: 58 HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCK 117
HLSLS+++V+ +HWI V+ L + + +R + ++I+ N+EKTR+F+ L S
Sbjct: 120 HLSLSQSVVLRHHWILPFVQALKDRVASFHRFCFTTDQVKIYTNQEKTRTFVGLEVTSGH 179
Query: 118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKL 176
+V VD+ +EF L T+Y++P+FH S+AWC+ D I +F+
Sbjct: 180 AHFLDLVAEVDRVMEEFDLSTFYQDPSFHISLAWCVGDARLQMEGPCLQELQGIVDEFED 239
Query: 177 TSDESFHVVTHIHMKTGNKFYSFPL 201
+ I K+GNKF+S PL
Sbjct: 240 SEMLLRAYAEQIRCKSGNKFFSMPL 264
>FB|FBgn0037713 [details] [associations]
symbol:CG16790 species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR009097 Pfam:PF09749 EMBL:AE014297 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0090305 SUPFAM:SSF55144
GO:GO:0004518 eggNOG:NOG251744 GeneTree:ENSGT00390000004596
HAMAP:MF_03040 InterPro:IPR019146 PANTHER:PTHR13522 EMBL:BT023530
EMBL:BT023543 RefSeq:NP_649911.1 UniGene:Dm.24041
ProteinModelPortal:Q9VHB3 IntAct:Q9VHB3 MINT:MINT-329328
PaxDb:Q9VHB3 PRIDE:Q9VHB3 EnsemblMetazoa:FBtr0082112 GeneID:41155
KEGG:dme:Dmel_CG16790 UCSC:CG16790-RA FlyBase:FBgn0037713
InParanoid:Q9VHB3 OMA:TYVYVPA OrthoDB:EOG49ZW57 PhylomeDB:Q9VHB3
GenomeRNAi:41155 NextBio:822449 Bgee:Q9VHB3 Uniprot:Q9VHB3
Length = 258
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 64/204 (31%), Positives = 107/204 (52%)
Query: 1 MDNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVIPEP--H 58
+D+P EHGGR+RSF H+R +WAT VY+P + +L E + + +E+ P H
Sbjct: 58 VDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEAIARLEPHLELQPNESLH 117
Query: 59 LSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKT 118
LSLS+T+V+ YH ID +L + L + I+ NEE+TR+FIA ++
Sbjct: 118 LSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFV 177
Query: 119 S-LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXXXXXXDNIFTQFKLT 177
+T+I+Q +D+ +++L +Y+ +FH S+ WC+ D +
Sbjct: 178 EKMTAILQPIDQVMLDYRLQQFYDPASFHVSLLWCVGDQETLLNEKLTELKELLDD---- 233
Query: 178 SDESFHVVTHIHMKTGNKFYSFPL 201
D+ V +H+K GNK +++ L
Sbjct: 234 QDKLCLAVNEVHLKCGNKDFTYSL 257
>UNIPROTKB|F1RFS6 [details] [associations]
symbol:USB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0034477 "U6 snRNA 3'-end processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] Pfam:PF09749 GeneTree:ENSGT00390000004596
InterPro:IPR019146 PANTHER:PTHR13522 EMBL:CU466242
Ensembl:ENSSSCT00000003107 OMA:FHISISW Uniprot:F1RFS6
Length = 150
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 50/146 (34%), Positives = 78/146 (53%)
Query: 58 HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCK 117
HLSLS+++V+ +HWI V+ L + + R + ++I+ N+EKTR+F+ L S
Sbjct: 5 HLSLSQSVVLRHHWILPFVQVLKDRVASFQRFCFTADQVKIYTNQEKTRTFVGLEVTSGH 64
Query: 118 TSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQDXXXXXXXX-XXXXDNIFTQFKL 176
+V VDK +EF L T+Y++P+FH S+AWC+ D I F+
Sbjct: 65 AQFLDLVSEVDKVMEEFDLTTFYQDPSFHVSLAWCVGDARLQLEGRCLQELQEIVDAFE- 123
Query: 177 TSDESFHV-VTHIHMKTGNKFYSFPL 201
S+ + I K+GNKF+S PL
Sbjct: 124 DSEMLLRMHAEQIRCKSGNKFFSMPL 149
>TAIR|locus:2176162 [details] [associations]
symbol:AT5G51170 "AT5G51170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0048573 "photoperiodism, flowering" evidence=RCA]
Pfam:PF09749 EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB023044
InterPro:IPR019146 PANTHER:PTHR13522 EMBL:AY088702 EMBL:BT004333
EMBL:BT005590 IPI:IPI00538019 RefSeq:NP_568753.1 UniGene:At.29692
ProteinModelPortal:Q9LU57 IntAct:Q9LU57 DNASU:835191
EnsemblPlants:AT5G51170.1 GeneID:835191 KEGG:ath:AT5G51170
TAIR:At5g51170 HOGENOM:HOG000272712 InParanoid:Q9LU57 OMA:GNYALHV
PhylomeDB:Q9LU57 ProtClustDB:CLSN2689985 ArrayExpress:Q9LU57
Genevestigator:Q9LU57 Uniprot:Q9LU57
Length = 285
Score = 153 (58.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 56 EPHLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANS 115
E H+SL + + + H I++++ L L+ R I FN E+F N++ TRSF++L +
Sbjct: 134 EFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITT 193
Query: 116 CKTS-LTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCLQD 155
S ++ + AV++ + LP +Y++P H S+ W L D
Sbjct: 194 SGLSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGD 234
Score = 62 (26.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 6 EHGGRIRSFPHQRNSWATLVYIPL 29
E G R+R+FPH ++A VY+P+
Sbjct: 61 EPGVRVRNFPHVDGNYALHVYVPV 84
>DICTYBASE|DDB_G0279967 [details] [associations]
symbol:DDB_G0279967 "UPF0406 family protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] Pfam:PF09749
dictyBase:DDB_G0279967 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
EMBL:AAFI02000035 GO:GO:0090305 GO:GO:0004518 eggNOG:NOG251744
HAMAP:MF_03040 InterPro:IPR019146 PANTHER:PTHR13522
RefSeq:XP_641434.1 EnsemblProtists:DDB0266862 GeneID:8622319
KEGG:ddi:DDB_G0279967 OMA:NQSRIFL ProtClustDB:CLSZ2846810
Uniprot:Q54W16
Length = 275
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 42/155 (27%), Positives = 79/155 (50%)
Query: 5 NEHGGRIRSFPHQRNSWATLVYIPLQT----NLARLYAMLKEELNSVGISVEVIPEPHLS 60
+E + R F H ++ T +Y + T ++ L +KE N + I + H+S
Sbjct: 65 DETNKKTRLFEHVEGNYPTFIYFKVPTKSRNDIKELIEQVKEIGNEINIKQDTETCFHIS 124
Query: 61 LSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNS-IEIFCNEEKTRSFIALGAN-SCKT 118
+S+T I H I+T + L L++ + I+ + +F N+ ++R F+++ N S K+
Sbjct: 125 ISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPINQSFKS 184
Query: 119 SLTSIVQAVDKSAQEFKLPTYYEEPNFHASIAWCL 153
++ +++ +D FK P YY+ P H SI+W L
Sbjct: 185 NILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219
>POMBASE|SPAC23C11.10 [details] [associations]
symbol:mpn1 "mitochondrial respiratory chain complex
III assembly Usb1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
Pfam:PF09749 PomBase:SPAC23C11.10 GO:GO:0005634 EMBL:CU329670
GO:GO:0008380 GO:GO:0006397 GO:GO:0090305 GO:GO:0004518
HAMAP:MF_03040 InterPro:IPR019146 PANTHER:PTHR13522 PIR:T38248
RefSeq:NP_593641.2 EnsemblFungi:SPAC23C11.10.1 GeneID:2542061
KEGG:spo:SPAC23C11.10 eggNOG:NOG269005 OrthoDB:EOG4HMNM3
NextBio:20803135 Uniprot:O13915
Length = 265
Score = 117 (46.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 42/158 (26%), Positives = 65/158 (41%)
Query: 2 DNPNEHGGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVG------ISVEVIP 55
D+P H GRIR H W Y+ + + ++ ++E LNS S +P
Sbjct: 47 DSPEFHEGRIRGQKHIEGLWFVQTYLEVDLS-KKVKKGIREFLNSQSRFQSLLCSEHNVP 105
Query: 56 EP-HLSLSKTLVIPYHWIDTLVETLGNNLRHLNRLTIKFN--SIEIFCNEEKTRSFIALG 112
HLS+S+ I Y + LV +LN T+KF + + N+EKTR F+A
Sbjct: 106 RRLHLSISENYRINYSTKNQLVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLAFE 165
Query: 113 ANSCKTSLTSIVQAVDKSAQEFKLPTYYEEPNFHASIA 150
+ ++ +EF E+ H S A
Sbjct: 166 CKFSDENYKDLISHASDCMKEFTNRNLREDFLLHISFA 203
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 202 190 0.00091 110 3 11 22 0.43 32
31 0.42 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 602 (64 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 17.56u 0.08s 17.64t Elapsed: 00:00:23
Total cpu time: 17.56u 0.08s 17.64t Elapsed: 00:00:25
Start: Thu Aug 15 12:19:53 2013 End: Thu Aug 15 12:20:18 2013