RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16608
         (202 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 68/211 (32%)

Query: 8   GGRIRSFPHQRNSWATLVYIPLQTNLARLYAMLK-EELNSVGISVEVIPE----PHLSLS 62
              IR      ++W  +    L T +     +L+  E   +   + V P     P    +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP----T 389

Query: 63  KTLVIPYHWIDTLVETLGNNLRHLNRLTIKFNSIEIFCNEEKTRSFIALGANSCKTSLTS 122
             L +   W D                 +  + + +  N+    S +         S+ S
Sbjct: 390 ILLSL--IWFD-----------------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 123 IVQAVDKSAQEFKLPTYYEEPNFHASI--------AWCLQDKTATLKPLLTKLDNIFTQF 174
           I   +    +         E   H SI         +   D       +   LD  F   
Sbjct: 431 IYLELKVKLE--------NEYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYF--- 473

Query: 175 KLTSDESFHVVTHI--HMKT---GNKFYSFP 200
                  +    HI  H+K      +   F 
Sbjct: 474 -------YS---HIGHHLKNIEHPERMTLFR 494



 Score = 35.2 bits (80), Expect = 0.011
 Identities = 40/279 (14%), Positives = 77/279 (27%), Gaps = 112/279 (40%)

Query: 4   PNEHGGRIRSFPHQRNS-WATL-VYIPLQTNLARLYAMLKEELNSVGISVEVIPEPHLSL 61
             +     R +  QR+  +    V+     +  + Y  L++ L      +E+ P  ++ +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL------LELRPAKNVLI 155

Query: 62  ------SKT-LVI------------PY--HWI--------DTLVETLGNNL--------- 83
                  KT + +             +   W+        +T++E L   L         
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWT 214

Query: 84  ---RHLNRLTIKFNSIE-----IFCNEEKTRSFIALG-----------ANSCKTSLT--- 121
               H + + ++ +SI+     +  ++      + L              SCK  LT   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 122 -SIVQAV-------------------DKSAQEF---------KLPTYYEE-----PNFHA 147
             +   +                   D+               LP    E     P   +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLS 331

Query: 148 SIAWCLQDKTATLKPLLT----KLDNIFTQF--KLTSDE 180
            IA  ++D  AT          KL  I       L   E
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370


>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10
           plasmid, replication initiator dimer.; 2.75A
           {Pseudomonas syringae PV} SCOP: a.4.5.10
          Length = 132

 Score = 26.0 bits (57), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 157 TATLKPLLTKLDNIFTQFKL 176
           + T+ P LT L   FT ++L
Sbjct: 112 SPTIIPHLTMLHKEFTSYQL 131


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,909,383
Number of extensions: 152305
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 7
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)