RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16608
         (202 letters)



>d2a10a1 d.58.56.1 (A:4-107) Carboxysome shell protein CcmK4
          {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 104

 Score = 26.2 bits (58), Expect = 1.2
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 49 ISVEVIPEPHLSLSKTLVIPY 69
           +  +IP PH ++   L I +
Sbjct: 72 KTWVIIPRPHENVVAVLPIDF 92


>d2a1ba1 d.58.56.1 (A:2-102) Carboxysome shell protein CcmK2
          {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 101

 Score = 25.8 bits (57), Expect = 1.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 49 ISVEVIPEPHLSLSKTLVIPY 69
          +S  +I  PH +L   L I Y
Sbjct: 72 LSTHIIARPHENLEYVLPIRY 92


>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX,
           N-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 88

 Score = 24.4 bits (53), Expect = 4.4
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 39  MLKEELNSVGISVEVIPEPHLSLSKTLVIP-YHWIDTLVETLGNNLRHLNRLTIKFNSIE 97
           ML E   ++G+  + +  P L +           +   +E   +  R L        ++ 
Sbjct: 15  MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARY-LTALG 73

Query: 98  IFC 100
           I  
Sbjct: 74  IPV 76


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
          domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 23.5 bits (51), Expect = 8.2
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 10 RIRSFPHQRNSWATLVYIPLQTNLARLYAMLKEELNSVGISVEVI 54
           I S P +        ++   + +      +   L ++   VE+I
Sbjct: 32 WIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEMI 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 720,682
Number of extensions: 29404
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 7
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)