Query psy16611
Match_columns 341
No_of_seqs 700 out of 2994
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 17:22:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1129|consensus 100.0 1.6E-46 3.4E-51 298.1 20.8 335 1-338 45-442 (478)
2 KOG4626|consensus 100.0 7.6E-33 1.6E-37 237.1 20.6 257 74-337 230-502 (966)
3 KOG4626|consensus 100.0 6.3E-33 1.4E-37 237.6 19.0 215 120-336 253-467 (966)
4 KOG1126|consensus 100.0 2.2E-27 4.7E-32 205.7 18.5 218 121-340 355-606 (638)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-25 2.9E-30 208.5 29.3 221 116-338 328-555 (615)
6 KOG1126|consensus 99.9 1.3E-26 2.8E-31 200.9 17.5 213 109-326 414-626 (638)
7 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-24 4.6E-29 200.5 29.0 213 109-326 358-577 (615)
8 PRK15174 Vi polysaccharide exp 99.9 6.4E-24 1.4E-28 197.0 28.8 221 110-335 104-328 (656)
9 PRK15174 Vi polysaccharide exp 99.9 1.7E-23 3.7E-28 194.2 29.6 249 74-330 88-357 (656)
10 COG3063 PilF Tfp pilus assembl 99.9 2.9E-23 6.2E-28 158.5 24.1 211 119-330 35-246 (250)
11 TIGR02521 type_IV_pilW type IV 99.9 9.9E-23 2.1E-27 166.7 27.4 204 119-322 31-234 (234)
12 KOG1155|consensus 99.9 2.3E-23 4.9E-28 173.6 22.8 217 120-338 331-554 (559)
13 KOG1125|consensus 99.9 1.6E-23 3.5E-28 179.1 21.1 202 122-323 288-530 (579)
14 KOG1173|consensus 99.9 4.2E-23 9.1E-28 175.9 23.1 231 101-336 297-534 (611)
15 PRK09782 bacteriophage N4 rece 99.9 1.4E-22 3E-27 192.7 28.7 212 121-336 511-722 (987)
16 PRK11189 lipoprotein NlpI; Pro 99.9 1.5E-22 3.3E-27 170.5 25.6 213 119-338 64-284 (296)
17 PRK12370 invasion protein regu 99.9 6.4E-23 1.4E-27 187.4 25.0 200 133-334 275-484 (553)
18 PRK11447 cellulose synthase su 99.9 2E-22 4.2E-27 198.9 29.2 209 124-334 274-538 (1157)
19 KOG1155|consensus 99.9 2.1E-22 4.6E-27 167.8 21.5 194 125-320 268-495 (559)
20 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-21 2.4E-26 190.9 30.4 221 111-336 460-680 (899)
21 PRK09782 bacteriophage N4 rece 99.9 1.1E-21 2.5E-26 186.4 29.1 215 119-339 477-691 (987)
22 PRK11447 cellulose synthase su 99.9 8.2E-22 1.8E-26 194.6 29.1 222 108-334 377-680 (1157)
23 PRK11788 tetratricopeptide rep 99.9 2.3E-21 5.1E-26 171.2 28.5 211 120-333 108-324 (389)
24 PRK11788 tetratricopeptide rep 99.9 1.3E-21 2.8E-26 172.9 26.6 223 109-335 62-292 (389)
25 KOG0547|consensus 99.9 2.1E-22 4.6E-27 168.9 20.2 219 119-339 326-551 (606)
26 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-21 4.5E-26 189.0 30.2 213 120-335 602-814 (899)
27 PRK12370 invasion protein regu 99.9 1.8E-21 3.9E-26 178.0 25.5 206 107-319 286-501 (553)
28 KOG0547|consensus 99.9 7.3E-22 1.6E-26 165.7 19.7 217 109-330 353-576 (606)
29 COG3063 PilF Tfp pilus assembl 99.9 6E-21 1.3E-25 145.9 22.0 185 153-339 35-221 (250)
30 TIGR02521 type_IV_pilW type IV 99.9 3.4E-20 7.4E-25 151.6 25.7 184 152-337 30-215 (234)
31 PLN02789 farnesyltranstransfer 99.9 1.3E-19 2.8E-24 152.4 25.5 211 124-336 42-266 (320)
32 PF13429 TPR_15: Tetratricopep 99.9 2.4E-21 5.3E-26 162.9 14.2 215 120-338 45-261 (280)
33 KOG1125|consensus 99.9 5.5E-20 1.2E-24 157.7 19.0 225 74-311 285-562 (579)
34 KOG1129|consensus 99.9 9.5E-21 2.1E-25 151.7 13.2 212 120-333 257-471 (478)
35 KOG2076|consensus 99.9 7.3E-19 1.6E-23 157.7 26.5 218 120-339 140-497 (895)
36 KOG2003|consensus 99.8 1.4E-19 3.1E-24 151.1 19.0 215 120-336 491-705 (840)
37 KOG1173|consensus 99.8 4.7E-19 1E-23 151.5 21.7 211 128-340 287-504 (611)
38 PF13429 TPR_15: Tetratricopep 99.8 4.3E-20 9.3E-25 155.3 14.4 196 121-320 80-277 (280)
39 PRK10049 pgaA outer membrane p 99.8 3.2E-18 7E-23 162.3 27.8 206 128-333 246-469 (765)
40 KOG0624|consensus 99.8 2.8E-18 6.1E-23 138.5 22.3 220 120-339 39-271 (504)
41 PRK11189 lipoprotein NlpI; Pro 99.8 2E-18 4.4E-23 145.5 22.8 201 132-339 39-250 (296)
42 KOG2002|consensus 99.8 1.2E-18 2.6E-23 157.5 22.3 222 111-337 159-388 (1018)
43 PLN02789 farnesyltranstransfer 99.8 5.5E-18 1.2E-22 142.6 23.6 248 76-331 34-313 (320)
44 KOG2002|consensus 99.8 4.1E-18 8.9E-23 154.0 24.0 218 120-337 200-426 (1018)
45 KOG0624|consensus 99.8 1.2E-17 2.7E-22 134.8 23.4 219 120-340 107-390 (504)
46 PRK10049 pgaA outer membrane p 99.8 1.4E-17 3.1E-22 158.0 28.0 144 194-337 279-439 (765)
47 KOG2076|consensus 99.8 3.4E-18 7.4E-23 153.5 22.2 212 107-321 164-513 (895)
48 KOG1840|consensus 99.8 6E-18 1.3E-22 148.5 22.9 225 113-337 193-462 (508)
49 TIGR03302 OM_YfiO outer membra 99.8 1.1E-17 2.5E-22 137.1 22.6 192 113-323 27-235 (235)
50 KOG1174|consensus 99.8 6.7E-18 1.4E-22 139.4 20.6 215 120-337 301-517 (564)
51 TIGR00540 hemY_coli hemY prote 99.8 3.6E-17 7.9E-22 144.5 26.5 217 120-337 119-382 (409)
52 PRK15359 type III secretion sy 99.8 2.8E-18 6.1E-23 128.4 16.4 129 207-340 13-141 (144)
53 TIGR03302 OM_YfiO outer membra 99.8 1.1E-17 2.5E-22 137.1 20.9 162 108-288 59-234 (235)
54 COG2956 Predicted N-acetylgluc 99.8 5.2E-17 1.1E-21 130.2 23.7 204 120-324 70-282 (389)
55 KOG0548|consensus 99.8 2E-17 4.4E-22 141.0 21.1 217 120-337 225-472 (539)
56 PRK10747 putative protoheme IX 99.8 1.9E-16 4.1E-21 139.3 26.6 212 120-337 119-373 (398)
57 PRK15359 type III secretion sy 99.8 9.4E-18 2E-22 125.6 15.3 122 175-301 15-136 (144)
58 COG2956 Predicted N-acetylgluc 99.8 3.2E-16 7E-21 125.7 23.4 212 126-340 42-264 (389)
59 PRK10370 formate-dependent nit 99.8 8.2E-17 1.8E-21 126.9 20.0 122 166-289 52-176 (198)
60 KOG4162|consensus 99.8 1.3E-16 2.9E-21 141.2 22.7 215 107-326 469-789 (799)
61 cd05804 StaR_like StaR_like; a 99.8 2.3E-16 5E-21 137.6 23.9 202 118-322 5-217 (355)
62 KOG1840|consensus 99.8 1.2E-16 2.6E-21 140.4 21.4 207 114-320 236-479 (508)
63 KOG2003|consensus 99.8 9.6E-17 2.1E-21 134.4 19.1 213 122-336 457-671 (840)
64 COG5010 TadD Flp pilus assembl 99.8 3.3E-16 7.1E-21 122.7 20.3 181 135-318 49-229 (257)
65 PRK14574 hmsH outer membrane p 99.8 7.9E-16 1.7E-20 144.2 26.0 201 112-318 30-230 (822)
66 TIGR00540 hemY_coli hemY prote 99.7 9.3E-16 2E-20 135.6 24.7 196 122-320 156-399 (409)
67 KOG3060|consensus 99.7 2.9E-15 6.2E-20 116.4 23.8 204 133-338 26-238 (289)
68 PRK10747 putative protoheme IX 99.7 9.4E-16 2E-20 134.9 24.2 192 124-321 158-391 (398)
69 PRK10370 formate-dependent nit 99.7 5.3E-16 1.2E-20 122.3 19.4 134 200-335 52-188 (198)
70 TIGR02552 LcrH_SycD type III s 99.7 2.5E-16 5.5E-21 117.5 16.5 131 208-340 4-134 (135)
71 KOG0550|consensus 99.7 8.5E-17 1.8E-21 133.0 14.4 215 120-335 118-364 (486)
72 PRK15179 Vi polysaccharide bio 99.7 4.8E-15 1E-19 136.6 27.3 147 176-324 75-221 (694)
73 KOG0548|consensus 99.7 2.9E-15 6.2E-20 128.0 22.8 147 190-339 227-440 (539)
74 KOG0495|consensus 99.7 3.4E-15 7.4E-20 130.2 23.5 216 108-329 576-791 (913)
75 PRK14574 hmsH outer membrane p 99.7 2.4E-15 5.1E-20 141.0 23.9 192 142-336 23-214 (822)
76 KOG0550|consensus 99.7 2.7E-16 5.8E-21 130.1 13.7 149 190-340 172-336 (486)
77 KOG0495|consensus 99.7 1.6E-14 3.4E-19 126.1 24.9 216 120-338 517-732 (913)
78 KOG0553|consensus 99.7 5.5E-16 1.2E-20 123.7 14.0 117 223-339 81-197 (304)
79 KOG4162|consensus 99.7 1.1E-14 2.3E-19 129.4 23.2 206 135-340 460-769 (799)
80 KOG1174|consensus 99.7 1.4E-14 3.1E-19 120.0 21.0 221 109-331 188-408 (564)
81 PRK15179 Vi polysaccharide bio 99.7 6.9E-15 1.5E-19 135.5 21.4 154 138-293 71-224 (694)
82 PRK14720 transcript cleavage f 99.7 8.5E-15 1.8E-19 136.0 21.7 203 115-336 27-268 (906)
83 KOG3060|consensus 99.7 4.5E-14 9.7E-19 109.9 21.8 182 120-303 53-237 (289)
84 COG5010 TadD Flp pilus assembl 99.7 1.2E-14 2.6E-19 114.0 18.0 169 110-284 61-229 (257)
85 PRK15363 pathogenicity island 99.7 1E-14 2.2E-19 107.1 15.9 123 214-338 27-150 (157)
86 KOG1156|consensus 99.7 2E-14 4.4E-19 125.3 20.3 212 122-335 10-263 (700)
87 TIGR02552 LcrH_SycD type III s 99.7 8.5E-15 1.8E-19 109.2 15.4 116 175-292 5-120 (135)
88 KOG1128|consensus 99.6 1.2E-14 2.6E-19 128.3 15.8 192 120-322 399-618 (777)
89 KOG0553|consensus 99.6 8.9E-15 1.9E-19 116.9 13.3 113 192-306 86-198 (304)
90 KOG1127|consensus 99.6 1.9E-14 4.2E-19 130.8 16.8 204 132-335 471-674 (1238)
91 cd05804 StaR_like StaR_like; a 99.6 1.5E-13 3.4E-18 119.9 21.7 174 149-325 2-182 (355)
92 COG4783 Putative Zn-dependent 99.6 2.9E-12 6.3E-17 109.0 24.4 153 150-321 303-455 (484)
93 KOG1127|consensus 99.6 3.1E-14 6.8E-19 129.4 13.3 219 120-339 563-898 (1238)
94 PF12569 NARP1: NMDA receptor- 99.6 6.7E-12 1.4E-16 112.0 27.4 198 123-320 8-291 (517)
95 PRK15363 pathogenicity island 99.6 2.9E-13 6.3E-18 99.5 15.1 102 184-287 32-133 (157)
96 PLN03088 SGT1, suppressor of 99.6 2E-13 4.4E-18 117.8 16.5 112 191-304 6-117 (356)
97 PLN03218 maturation of RBCL 1; 99.6 1.1E-11 2.3E-16 119.9 29.2 192 120-316 508-709 (1060)
98 COG4783 Putative Zn-dependent 99.5 3E-12 6.5E-17 108.9 22.3 153 184-338 303-455 (484)
99 KOG1128|consensus 99.5 4.3E-13 9.2E-18 118.8 16.7 176 149-335 394-597 (777)
100 KOG1130|consensus 99.5 6.7E-14 1.5E-18 116.1 10.9 201 120-320 96-344 (639)
101 PLN03218 maturation of RBCL 1; 99.5 3.2E-11 6.9E-16 116.7 29.5 195 120-319 543-747 (1060)
102 PLN03081 pentatricopeptide (PP 99.5 6.7E-12 1.4E-16 118.9 22.7 195 120-318 326-555 (697)
103 PLN03088 SGT1, suppressor of 99.5 1.2E-12 2.6E-17 113.0 15.9 113 156-270 5-117 (356)
104 KOG2376|consensus 99.5 6.8E-12 1.5E-16 108.8 20.1 194 127-326 20-259 (652)
105 KOG1156|consensus 99.5 1.2E-11 2.7E-16 108.3 21.4 205 120-324 76-287 (700)
106 PRK14720 transcript cleavage f 99.5 3.7E-12 8E-17 118.8 19.3 164 147-327 25-205 (906)
107 PLN03081 pentatricopeptide (PP 99.5 6E-12 1.3E-16 119.2 21.2 191 120-315 291-486 (697)
108 PRK10866 outer membrane biogen 99.5 3.4E-11 7.3E-16 98.1 22.6 165 152-316 31-237 (243)
109 KOG1130|consensus 99.5 1.5E-13 3.2E-18 114.1 7.9 195 126-320 24-264 (639)
110 PF12569 NARP1: NMDA receptor- 99.5 5.2E-11 1.1E-15 106.4 23.8 200 120-321 39-335 (517)
111 TIGR02795 tol_pal_ybgF tol-pal 99.5 4.2E-12 9.1E-17 92.3 14.2 109 223-331 2-116 (119)
112 PF13525 YfiO: Outer membrane 99.4 3.6E-11 7.7E-16 95.7 20.0 158 154-311 6-198 (203)
113 COG3071 HemY Uncharacterized e 99.4 2.1E-10 4.6E-15 95.3 24.7 200 120-320 119-390 (400)
114 PF04733 Coatomer_E: Coatomer 99.4 3.8E-12 8.2E-17 106.1 14.6 202 122-330 69-275 (290)
115 CHL00033 ycf3 photosystem I as 99.4 1.4E-11 3.1E-16 95.2 14.9 103 223-325 35-154 (168)
116 PLN03077 Protein ECB2; Provisi 99.4 9.6E-11 2.1E-15 113.7 23.8 188 125-319 530-719 (857)
117 COG4235 Cytochrome c biogenesi 99.4 4.2E-11 9.2E-16 96.7 16.9 118 205-324 140-260 (287)
118 PRK02603 photosystem I assembl 99.4 2.4E-11 5.2E-16 94.3 14.9 121 185-325 33-154 (172)
119 PLN03077 Protein ECB2; Provisi 99.4 2.2E-10 4.7E-15 111.3 24.4 145 186-335 553-701 (857)
120 PRK02603 photosystem I assembl 99.4 3.7E-11 8E-16 93.2 15.3 118 151-290 33-153 (172)
121 PRK10866 outer membrane biogen 99.4 4.2E-10 9.2E-15 91.7 21.8 164 120-283 33-238 (243)
122 cd00189 TPR Tetratricopeptide 99.4 1.9E-11 4E-16 84.8 12.2 98 225-322 2-99 (100)
123 PF13525 YfiO: Outer membrane 99.4 1.7E-10 3.8E-15 91.7 19.1 152 186-337 4-187 (203)
124 KOG4340|consensus 99.4 4.3E-11 9.4E-16 95.7 15.3 188 129-320 20-207 (459)
125 CHL00033 ycf3 photosystem I as 99.4 4.1E-11 8.8E-16 92.7 14.9 102 133-236 13-119 (168)
126 TIGR02795 tol_pal_ybgF tol-pal 99.4 3.7E-11 8E-16 87.3 13.9 104 189-292 4-111 (119)
127 PF04733 Coatomer_E: Coatomer 99.4 2.4E-11 5.2E-16 101.4 14.4 167 120-293 103-272 (290)
128 COG4235 Cytochrome c biogenesi 99.4 4.4E-11 9.6E-16 96.6 15.3 120 169-290 138-260 (287)
129 KOG3785|consensus 99.4 3.6E-10 7.8E-15 92.6 20.3 194 129-332 32-226 (557)
130 COG3071 HemY Uncharacterized e 99.4 3.8E-09 8.2E-14 88.0 26.5 211 122-335 87-371 (400)
131 KOG3785|consensus 99.4 7.3E-11 1.6E-15 96.6 16.2 211 122-337 60-328 (557)
132 PF09976 TPR_21: Tetratricopep 99.3 1.3E-10 2.7E-15 87.5 16.4 117 166-283 24-144 (145)
133 PF13414 TPR_11: TPR repeat; P 99.3 7.7E-12 1.7E-16 81.2 8.4 66 257-322 3-69 (69)
134 KOG1915|consensus 99.3 1.7E-09 3.6E-14 92.0 22.9 216 120-339 74-294 (677)
135 PF14938 SNAP: Soluble NSF att 99.3 1.5E-10 3.3E-15 97.1 16.8 164 160-324 42-229 (282)
136 cd00189 TPR Tetratricopeptide 99.3 5E-11 1.1E-15 82.5 11.7 97 190-288 3-99 (100)
137 PRK15331 chaperone protein Sic 99.3 1.8E-10 3.9E-15 85.2 14.5 103 223-326 37-139 (165)
138 PF13414 TPR_11: TPR repeat; P 99.3 1.9E-11 4.1E-16 79.3 8.3 66 223-288 3-69 (69)
139 PRK11906 transcriptional regul 99.3 1.2E-09 2.5E-14 93.9 21.1 163 157-321 259-437 (458)
140 PF09976 TPR_21: Tetratricopep 99.3 3.9E-10 8.5E-15 84.8 16.1 121 127-250 19-145 (145)
141 PRK10153 DNA-binding transcrip 99.3 4.6E-10 1E-14 101.0 19.1 120 169-291 358-487 (517)
142 PRK10153 DNA-binding transcrip 99.3 4.1E-10 8.9E-15 101.3 18.8 143 181-326 331-488 (517)
143 KOG1915|consensus 99.3 4E-09 8.7E-14 89.7 23.2 220 110-336 316-551 (677)
144 PRK10803 tol-pal system protei 99.3 2.8E-10 6E-15 93.4 15.7 113 223-335 142-261 (263)
145 KOG0543|consensus 99.3 1.8E-10 3.8E-15 96.5 14.6 100 223-322 257-357 (397)
146 COG0457 NrfG FOG: TPR repeat [ 99.3 7.4E-09 1.6E-13 84.5 24.4 204 120-323 60-268 (291)
147 KOG1070|consensus 99.3 3.2E-09 6.9E-14 100.7 24.1 217 110-332 1452-1675(1710)
148 KOG0543|consensus 99.3 1.8E-10 3.9E-15 96.4 14.4 114 226-339 211-339 (397)
149 PRK11906 transcriptional regul 99.3 4.9E-10 1.1E-14 96.1 16.9 159 123-283 259-433 (458)
150 PF12895 Apc3: Anaphase-promot 99.3 2.9E-11 6.3E-16 81.7 7.5 79 237-316 3-83 (84)
151 PF12895 Apc3: Anaphase-promot 99.2 4.6E-11 1E-15 80.7 8.4 79 167-248 3-83 (84)
152 PRK10803 tol-pal system protei 99.2 5.5E-10 1.2E-14 91.6 16.0 104 154-257 143-251 (263)
153 COG4785 NlpI Lipoprotein NlpI, 99.2 2.8E-09 6.1E-14 81.6 18.2 197 119-322 65-268 (297)
154 PF13432 TPR_16: Tetratricopep 99.2 5.3E-11 1.1E-15 76.2 7.6 62 263-324 3-64 (65)
155 PF14938 SNAP: Soluble NSF att 99.2 2.4E-09 5.1E-14 89.9 19.7 202 120-322 36-268 (282)
156 PF13432 TPR_16: Tetratricopep 99.2 9.2E-11 2E-15 75.0 8.3 64 228-291 2-65 (65)
157 PRK15331 chaperone protein Sic 99.2 5.5E-10 1.2E-14 82.6 12.4 102 148-251 32-133 (165)
158 PF12688 TPR_5: Tetratrico pep 99.2 1.2E-09 2.6E-14 77.9 13.0 95 190-284 4-102 (120)
159 PRK04841 transcriptional regul 99.1 1.4E-08 3E-13 99.8 22.9 207 120-326 492-766 (903)
160 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 2.6E-09 5.6E-14 92.2 15.3 118 127-249 177-294 (395)
161 PRK04841 transcriptional regul 99.1 1.9E-08 4E-13 98.8 23.3 200 123-322 413-643 (903)
162 PF12688 TPR_5: Tetratrico pep 99.1 2.9E-09 6.3E-14 76.0 12.8 98 154-251 2-103 (120)
163 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 3E-09 6.6E-14 91.7 15.4 117 194-315 176-292 (395)
164 COG0457 NrfG FOG: TPR repeat [ 99.1 1.4E-07 2.9E-12 76.9 24.6 199 132-332 36-243 (291)
165 KOG4234|consensus 99.1 2.4E-09 5.2E-14 80.9 11.8 115 190-304 98-215 (271)
166 KOG2376|consensus 99.1 3.4E-08 7.4E-13 86.3 20.0 157 156-318 15-202 (652)
167 PF14559 TPR_19: Tetratricopep 99.1 5.2E-10 1.1E-14 72.3 7.1 66 268-333 2-67 (68)
168 KOG1941|consensus 99.1 4.9E-09 1.1E-13 86.3 13.4 208 114-321 78-321 (518)
169 KOG4648|consensus 99.1 1E-10 2.2E-15 95.3 3.7 207 123-333 101-343 (536)
170 COG4105 ComL DNA uptake lipopr 99.1 2.7E-07 5.9E-12 73.4 22.5 185 120-325 35-238 (254)
171 PF13512 TPR_18: Tetratricopep 99.0 1.6E-08 3.5E-13 73.3 13.9 108 223-330 10-138 (142)
172 KOG4648|consensus 99.0 1.4E-09 3.1E-14 88.8 9.4 109 227-335 101-209 (536)
173 KOG1070|consensus 99.0 5.2E-08 1.1E-12 92.8 20.6 198 135-335 1440-1644(1710)
174 PF13371 TPR_9: Tetratricopept 99.0 2.2E-09 4.9E-14 70.4 8.6 70 264-333 2-71 (73)
175 KOG4340|consensus 99.0 1.5E-08 3.2E-13 81.5 14.5 192 120-315 45-265 (459)
176 COG1729 Uncharacterized protei 99.0 1.4E-08 3.1E-13 81.3 14.3 105 156-260 144-252 (262)
177 KOG4234|consensus 99.0 7.8E-09 1.7E-13 78.2 11.9 110 154-265 96-210 (271)
178 COG1729 Uncharacterized protei 99.0 1.8E-08 3.9E-13 80.7 14.1 108 226-333 144-257 (262)
179 PF14559 TPR_19: Tetratricopep 99.0 1.9E-09 4E-14 69.7 7.0 66 234-299 2-67 (68)
180 COG4700 Uncharacterized protei 99.0 2.4E-07 5.3E-12 69.5 18.1 149 164-316 67-218 (251)
181 PF13371 TPR_9: Tetratricopept 99.0 7.1E-09 1.5E-13 67.9 8.6 66 230-295 2-67 (73)
182 COG4700 Uncharacterized protei 98.9 4.7E-07 1E-11 68.0 18.2 158 127-286 64-222 (251)
183 KOG3081|consensus 98.9 1.6E-06 3.4E-11 69.0 21.6 160 159-327 114-278 (299)
184 KOG1586|consensus 98.9 5.3E-07 1.2E-11 70.1 18.1 182 132-328 27-232 (288)
185 KOG2047|consensus 98.9 7.9E-07 1.7E-11 78.8 20.9 200 120-321 388-616 (835)
186 PF13512 TPR_18: Tetratricopep 98.9 1.5E-07 3.3E-12 68.3 13.9 121 153-292 10-134 (142)
187 PF06552 TOM20_plant: Plant sp 98.9 3.7E-08 7.9E-13 73.8 10.6 60 275-334 53-123 (186)
188 KOG2047|consensus 98.9 2E-06 4.3E-11 76.4 22.7 209 109-322 342-581 (835)
189 KOG3081|consensus 98.9 3.4E-06 7.4E-11 67.1 21.6 162 122-292 111-277 (299)
190 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2E-08 4.3E-13 86.3 9.9 69 217-287 71-142 (453)
191 KOG2796|consensus 98.8 2.8E-06 6.1E-11 67.4 20.9 136 155-290 179-319 (366)
192 KOG1941|consensus 98.8 8.1E-08 1.8E-12 79.3 12.8 195 126-320 50-275 (518)
193 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 6.2E-08 1.4E-12 83.3 12.5 70 182-253 70-142 (453)
194 KOG2796|consensus 98.8 9.9E-07 2.1E-11 69.9 17.2 186 125-325 128-320 (366)
195 COG4105 ComL DNA uptake lipopr 98.8 1.9E-06 4.1E-11 68.7 18.8 171 152-339 33-215 (254)
196 KOG4555|consensus 98.8 8.8E-07 1.9E-11 62.4 14.0 96 191-288 47-146 (175)
197 PF13424 TPR_12: Tetratricopep 98.8 2.4E-08 5.3E-13 66.3 6.3 64 188-251 6-74 (78)
198 PF13424 TPR_12: Tetratricopep 98.7 2.5E-08 5.5E-13 66.2 5.9 63 223-285 5-74 (78)
199 PF04184 ST7: ST7 protein; In 98.7 1.9E-06 4E-11 74.6 18.4 201 125-328 174-422 (539)
200 KOG2053|consensus 98.7 9.6E-06 2.1E-10 74.7 23.8 211 109-324 36-259 (932)
201 KOG4555|consensus 98.7 1E-06 2.2E-11 62.1 13.6 98 157-254 47-146 (175)
202 COG4785 NlpI Lipoprotein NlpI, 98.7 2.6E-06 5.5E-11 65.7 15.7 129 152-283 64-192 (297)
203 KOG2610|consensus 98.7 3.8E-06 8.3E-11 69.0 17.5 170 156-325 106-283 (491)
204 PF05843 Suf: Suppressor of fo 98.7 1.8E-06 3.9E-11 72.3 16.0 133 155-289 3-139 (280)
205 PF05843 Suf: Suppressor of fo 98.7 2.1E-06 4.5E-11 71.9 16.0 137 121-257 3-141 (280)
206 PF06552 TOM20_plant: Plant sp 98.6 4.6E-07 1E-11 68.0 10.4 103 169-297 7-120 (186)
207 PF04184 ST7: ST7 protein; In 98.6 4.7E-06 1E-10 72.2 17.5 165 164-330 179-385 (539)
208 KOG2610|consensus 98.6 3.2E-06 6.9E-11 69.5 15.2 156 127-284 111-274 (491)
209 KOG1585|consensus 98.5 3.2E-05 7E-10 60.9 18.5 196 120-316 32-252 (308)
210 COG3898 Uncharacterized membra 98.5 7.4E-05 1.6E-09 62.9 21.5 167 120-288 121-294 (531)
211 KOG4642|consensus 98.5 9.2E-07 2E-11 69.1 8.7 94 191-286 14-107 (284)
212 KOG3617|consensus 98.5 2E-05 4.3E-10 72.2 17.9 186 120-320 758-996 (1416)
213 KOG4642|consensus 98.5 1.4E-06 3.1E-11 68.0 9.3 95 156-252 13-107 (284)
214 COG3898 Uncharacterized membra 98.5 0.00014 3.1E-09 61.3 21.3 196 126-324 91-296 (531)
215 PF13428 TPR_14: Tetratricopep 98.5 5.7E-07 1.2E-11 52.1 5.3 41 293-333 3-43 (44)
216 PF13281 DUF4071: Domain of un 98.4 0.00015 3.2E-09 62.2 20.8 172 152-326 140-340 (374)
217 PF13428 TPR_14: Tetratricopep 98.4 9.1E-07 2E-11 51.2 5.3 40 259-298 3-42 (44)
218 KOG0376|consensus 98.4 8.1E-07 1.8E-11 76.4 7.1 105 231-335 12-116 (476)
219 KOG3617|consensus 98.4 0.00014 2.9E-09 67.0 20.4 202 116-317 855-1171(1416)
220 KOG0545|consensus 98.3 8.7E-06 1.9E-10 64.0 10.4 102 223-324 178-297 (329)
221 KOG1585|consensus 98.3 0.00027 5.8E-09 55.9 18.3 168 153-320 31-219 (308)
222 PF13431 TPR_17: Tetratricopep 98.3 1.1E-06 2.4E-11 47.4 3.1 32 280-311 2-33 (34)
223 KOG0545|consensus 98.2 3.5E-05 7.7E-10 60.7 12.3 106 188-293 179-300 (329)
224 PF13431 TPR_17: Tetratricopep 98.2 1.1E-06 2.5E-11 47.4 3.0 32 246-277 2-33 (34)
225 KOG2471|consensus 98.2 7.5E-06 1.6E-10 70.6 9.2 144 127-270 214-382 (696)
226 KOG1586|consensus 98.2 0.0014 3E-08 51.6 21.6 168 125-293 40-231 (288)
227 KOG0530|consensus 98.2 0.00011 2.4E-09 58.6 14.4 173 129-303 53-233 (318)
228 KOG2471|consensus 98.2 1.4E-05 3.1E-10 68.9 10.2 147 158-304 211-382 (696)
229 PF13281 DUF4071: Domain of un 98.2 0.00043 9.2E-09 59.4 18.9 170 120-292 142-340 (374)
230 COG3118 Thioredoxin domain-con 98.2 0.00059 1.3E-08 55.7 18.5 161 153-315 134-296 (304)
231 KOG4507|consensus 98.2 1.8E-05 3.8E-10 69.8 10.6 101 234-334 618-719 (886)
232 KOG0376|consensus 98.2 2.8E-06 6E-11 73.2 5.7 107 158-266 9-115 (476)
233 PF10300 DUF3808: Protein of u 98.2 0.00053 1.2E-08 61.8 20.2 155 165-321 200-377 (468)
234 KOG2053|consensus 98.2 0.00011 2.4E-09 68.0 15.5 139 165-306 21-160 (932)
235 PF10300 DUF3808: Protein of u 98.2 0.00022 4.7E-09 64.3 17.4 156 131-286 200-376 (468)
236 KOG2300|consensus 98.1 0.0011 2.4E-08 57.6 19.8 203 131-336 287-533 (629)
237 KOG0551|consensus 98.1 6.5E-05 1.4E-09 61.9 11.6 123 167-289 56-185 (390)
238 PF07719 TPR_2: Tetratricopept 98.1 9.3E-06 2E-10 43.9 4.8 32 293-324 3-34 (34)
239 PF00515 TPR_1: Tetratricopept 98.1 9.9E-06 2.2E-10 43.8 4.7 24 297-320 7-30 (34)
240 PF00515 TPR_1: Tetratricopept 98.1 7.1E-06 1.5E-10 44.4 4.1 34 257-290 1-34 (34)
241 PF03704 BTAD: Bacterial trans 98.1 0.00027 5.9E-09 53.1 14.2 113 194-320 13-125 (146)
242 KOG0551|consensus 98.1 0.00016 3.6E-09 59.6 13.3 99 153-253 81-183 (390)
243 COG3118 Thioredoxin domain-con 98.1 0.00041 9E-09 56.6 15.4 152 122-276 137-291 (304)
244 COG0790 FOG: TPR repeat, SEL1 98.1 0.0055 1.2E-07 51.9 24.3 187 129-325 51-271 (292)
245 PF07719 TPR_2: Tetratricopept 98.0 1.7E-05 3.7E-10 42.9 5.1 31 259-289 3-33 (34)
246 PF04910 Tcf25: Transcriptiona 98.0 0.00094 2E-08 57.9 17.3 171 146-324 33-226 (360)
247 KOG0530|consensus 98.0 0.0019 4.1E-08 51.8 16.9 218 77-301 41-269 (318)
248 COG2976 Uncharacterized protei 97.9 0.0014 3E-08 50.2 15.4 97 226-323 92-191 (207)
249 PF03704 BTAD: Bacterial trans 97.9 0.00042 9.2E-09 52.0 12.9 114 157-285 10-124 (146)
250 KOG2300|consensus 97.9 0.0028 6.1E-08 55.2 18.6 188 125-315 329-551 (629)
251 PF08424 NRDE-2: NRDE-2, neces 97.9 0.0021 4.5E-08 55.1 18.1 146 140-287 6-184 (321)
252 KOG1258|consensus 97.9 0.019 4.2E-07 51.6 24.1 217 114-330 74-405 (577)
253 KOG1550|consensus 97.8 0.0052 1.1E-07 56.8 20.1 174 134-319 227-425 (552)
254 KOG1914|consensus 97.8 0.0085 1.8E-07 53.1 19.6 179 141-320 267-464 (656)
255 PF02259 FAT: FAT domain; Int 97.8 0.013 2.8E-07 51.1 21.5 115 223-337 146-304 (352)
256 KOG1308|consensus 97.8 2.7E-05 5.8E-10 64.4 4.1 92 160-253 121-212 (377)
257 COG2976 Uncharacterized protei 97.8 0.01 2.2E-07 45.6 21.1 100 190-290 92-192 (207)
258 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0052 1.1E-07 52.7 17.9 146 174-321 6-184 (321)
259 KOG1258|consensus 97.7 0.022 4.7E-07 51.3 21.1 204 131-336 267-486 (577)
260 COG0790 FOG: TPR repeat, SEL1 97.7 0.023 5.1E-07 48.1 21.0 161 120-289 74-269 (292)
261 PF13181 TPR_8: Tetratricopept 97.7 8.4E-05 1.8E-09 40.1 4.0 30 293-322 3-32 (34)
262 KOG1308|consensus 97.7 5E-05 1.1E-09 62.8 4.2 95 126-220 121-215 (377)
263 PF02259 FAT: FAT domain; Int 97.7 0.009 2E-07 52.1 18.6 141 183-323 142-341 (352)
264 COG2909 MalT ATP-dependent tra 97.7 0.023 5.1E-07 53.4 21.2 200 123-322 419-649 (894)
265 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00047 1E-08 41.1 6.8 47 292-338 2-48 (53)
266 PF13181 TPR_8: Tetratricopept 97.6 0.00015 3.2E-09 39.1 4.3 30 259-288 3-32 (34)
267 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.012 2.5E-07 51.2 16.7 177 141-320 290-495 (660)
268 KOG4507|consensus 97.5 0.00037 7.9E-09 61.9 7.8 93 200-293 620-712 (886)
269 PF04910 Tcf25: Transcriptiona 97.5 0.011 2.3E-07 51.4 16.7 36 109-147 33-68 (360)
270 KOG1914|consensus 97.5 0.046 9.9E-07 48.7 20.0 186 135-322 309-503 (656)
271 PF09613 HrpB1_HrpK: Bacterial 97.5 0.02 4.4E-07 42.8 15.3 83 225-307 12-94 (160)
272 KOG1550|consensus 97.5 0.019 4.2E-07 53.1 18.5 157 169-335 228-406 (552)
273 PRK10941 hypothetical protein; 97.5 0.0024 5.3E-08 52.7 11.3 80 258-337 182-261 (269)
274 KOG0985|consensus 97.5 0.014 3.1E-07 55.6 17.2 56 120-180 1105-1160(1666)
275 PF13174 TPR_6: Tetratricopept 97.4 0.0003 6.5E-09 37.5 4.0 31 293-323 2-32 (33)
276 KOG2396|consensus 97.4 0.0041 8.8E-08 54.5 12.5 90 205-296 89-179 (568)
277 PF13176 TPR_7: Tetratricopept 97.3 0.0002 4.4E-09 39.2 2.6 25 294-318 2-26 (36)
278 PF04781 DUF627: Protein of un 97.3 0.0033 7.2E-08 43.6 8.6 102 126-252 3-107 (111)
279 PF14561 TPR_20: Tetratricopep 97.3 0.0055 1.2E-07 41.4 9.5 66 243-308 8-75 (90)
280 KOG2422|consensus 97.3 0.059 1.3E-06 48.4 18.0 156 167-323 252-451 (665)
281 PF13174 TPR_6: Tetratricopept 97.3 0.00078 1.7E-08 35.8 4.4 31 259-289 2-32 (33)
282 PF13176 TPR_7: Tetratricopept 97.3 0.00076 1.6E-08 36.8 4.3 28 259-286 1-28 (36)
283 KOG3824|consensus 97.2 0.0017 3.6E-08 53.3 7.6 78 223-300 116-193 (472)
284 PRK10941 hypothetical protein; 97.2 0.0076 1.7E-07 49.8 11.3 74 223-296 181-254 (269)
285 PF07079 DUF1347: Protein of u 97.2 0.14 3E-06 44.8 19.9 140 191-338 383-543 (549)
286 KOG3616|consensus 97.2 0.01 2.2E-07 54.6 12.8 170 124-314 666-847 (1636)
287 KOG3824|consensus 97.2 0.0018 3.9E-08 53.1 7.3 77 189-267 118-194 (472)
288 PF09613 HrpB1_HrpK: Bacterial 97.1 0.011 2.4E-07 44.2 10.7 82 122-203 13-94 (160)
289 KOG1464|consensus 97.1 0.082 1.8E-06 43.0 16.0 190 131-320 39-260 (440)
290 KOG0985|consensus 97.1 0.05 1.1E-06 52.1 16.9 171 125-317 1054-1246(1666)
291 PF14561 TPR_20: Tetratricopep 97.1 0.0066 1.4E-07 41.1 8.6 45 140-184 9-53 (90)
292 KOG2396|consensus 97.1 0.0083 1.8E-07 52.6 10.9 95 169-265 87-182 (568)
293 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.18 3.9E-06 44.2 18.4 203 119-326 302-537 (660)
294 KOG3616|consensus 97.1 0.029 6.3E-07 51.8 14.4 169 156-324 768-1028(1636)
295 PF04781 DUF627: Protein of un 97.0 0.013 2.7E-07 40.8 9.4 47 241-287 62-108 (111)
296 KOG3364|consensus 97.0 0.02 4.3E-07 41.2 10.5 81 257-337 32-117 (149)
297 PF10602 RPN7: 26S proteasome 97.0 0.018 3.9E-07 44.6 11.3 98 188-285 37-141 (177)
298 COG4649 Uncharacterized protei 96.9 0.11 2.4E-06 39.3 16.3 120 166-285 71-195 (221)
299 COG2909 MalT ATP-dependent tra 96.9 0.26 5.5E-06 46.8 19.6 190 125-316 464-684 (894)
300 COG3914 Spy Predicted O-linked 96.9 0.1 2.2E-06 47.1 16.2 133 167-301 45-186 (620)
301 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.01 2.2E-07 35.4 6.9 34 260-293 4-37 (53)
302 PF08631 SPO22: Meiosis protei 96.8 0.23 5E-06 41.7 20.7 121 130-252 4-150 (278)
303 smart00028 TPR Tetratricopepti 96.8 0.0028 6.1E-08 33.0 4.1 31 293-323 3-33 (34)
304 PF12968 DUF3856: Domain of Un 96.8 0.068 1.5E-06 37.5 11.5 88 198-285 20-128 (144)
305 PF08631 SPO22: Meiosis protei 96.8 0.25 5.4E-06 41.5 23.0 198 119-318 35-273 (278)
306 COG4976 Predicted methyltransf 96.8 0.0021 4.6E-08 50.4 4.4 61 232-292 4-64 (287)
307 KOG3364|consensus 96.8 0.042 9.1E-07 39.6 10.4 72 188-259 33-107 (149)
308 COG3914 Spy Predicted O-linked 96.8 0.15 3.3E-06 46.0 16.1 137 132-270 43-189 (620)
309 PF12968 DUF3856: Domain of Un 96.8 0.11 2.3E-06 36.6 12.4 98 223-320 7-129 (144)
310 KOG3783|consensus 96.7 0.34 7.3E-06 43.5 18.0 211 111-325 262-525 (546)
311 PF10602 RPN7: 26S proteasome 96.7 0.069 1.5E-06 41.4 12.6 99 223-321 36-143 (177)
312 PRK15180 Vi polysaccharide bio 96.7 0.01 2.2E-07 51.9 8.5 124 165-290 301-424 (831)
313 PF09986 DUF2225: Uncharacteri 96.7 0.049 1.1E-06 43.6 11.9 86 167-252 91-194 (214)
314 smart00028 TPR Tetratricopepti 96.7 0.0041 8.8E-08 32.3 4.1 30 259-288 3-32 (34)
315 KOG2041|consensus 96.7 0.093 2E-06 48.3 14.3 53 197-249 770-822 (1189)
316 KOG1310|consensus 96.6 0.0089 1.9E-07 52.8 7.6 99 190-290 377-478 (758)
317 PRK15180 Vi polysaccharide bio 96.6 0.042 9E-07 48.3 11.5 127 129-257 299-425 (831)
318 PF09986 DUF2225: Uncharacteri 96.6 0.066 1.4E-06 42.8 12.1 87 200-286 90-194 (214)
319 KOG3807|consensus 96.6 0.35 7.6E-06 40.7 16.8 122 124-247 189-335 (556)
320 COG4976 Predicted methyltransf 96.5 0.0042 9.1E-08 48.8 4.6 61 195-257 3-63 (287)
321 COG4649 Uncharacterized protei 96.5 0.23 5E-06 37.6 16.7 144 161-319 47-195 (221)
322 PF07079 DUF1347: Protein of u 96.5 0.27 5.9E-06 43.1 15.6 125 156-283 382-521 (549)
323 KOG4814|consensus 96.5 0.041 8.9E-07 49.9 10.9 98 189-286 356-457 (872)
324 KOG1839|consensus 96.5 0.04 8.6E-07 54.1 11.6 160 125-286 938-1128(1236)
325 COG5191 Uncharacterized conser 96.5 0.012 2.6E-07 48.6 7.0 73 223-295 107-180 (435)
326 KOG3807|consensus 96.4 0.46 9.9E-06 40.0 18.0 174 157-332 188-403 (556)
327 TIGR02561 HrpB1_HrpK type III 96.4 0.24 5.1E-06 36.6 13.6 74 234-307 21-94 (153)
328 TIGR02561 HrpB1_HrpK type III 96.4 0.06 1.3E-06 39.6 9.5 77 127-203 18-94 (153)
329 KOG0890|consensus 96.4 0.54 1.2E-05 49.5 19.2 114 221-336 1668-1800(2382)
330 KOG4814|consensus 96.2 0.072 1.6E-06 48.4 11.0 97 225-321 356-458 (872)
331 KOG1310|consensus 96.2 0.023 4.9E-07 50.4 7.7 100 156-257 377-479 (758)
332 KOG1839|consensus 96.2 0.078 1.7E-06 52.2 11.7 163 156-320 935-1128(1236)
333 PF04053 Coatomer_WDAD: Coatom 96.0 0.52 1.1E-05 42.3 15.5 130 128-285 270-401 (443)
334 PF13374 TPR_10: Tetratricopep 96.0 0.02 4.4E-07 32.1 4.6 27 259-285 4-30 (42)
335 KOG2581|consensus 96.0 0.45 9.8E-06 41.1 13.9 100 224-323 170-279 (493)
336 PF13374 TPR_10: Tetratricopep 95.8 0.024 5.3E-07 31.7 4.4 30 223-252 2-31 (42)
337 KOG0529|consensus 95.8 0.76 1.6E-05 39.9 14.7 89 132-220 41-144 (421)
338 COG5191 Uncharacterized conser 95.8 0.02 4.4E-07 47.3 5.0 88 175-264 95-183 (435)
339 COG1747 Uncharacterized N-term 95.7 1.5 3.3E-05 39.3 22.0 198 122-324 69-292 (711)
340 KOG2041|consensus 95.6 0.5 1.1E-05 43.8 13.5 80 187-280 796-875 (1189)
341 PF10345 Cohesin_load: Cohesin 95.5 2.3 5E-05 40.3 19.8 197 122-319 364-605 (608)
342 PF10345 Cohesin_load: Cohesin 95.5 2.3 5E-05 40.3 21.1 181 136-317 38-251 (608)
343 KOG2581|consensus 95.5 1.5 3.3E-05 38.1 18.1 131 127-257 134-281 (493)
344 COG2912 Uncharacterized conser 95.4 0.18 4E-06 41.2 9.4 77 259-335 183-259 (269)
345 COG3629 DnrI DNA-binding trans 95.2 0.15 3.3E-06 42.2 8.5 63 223-285 153-215 (280)
346 KOG2422|consensus 95.2 2.4 5.2E-05 38.6 16.0 155 131-288 250-450 (665)
347 PF12862 Apc5: Anaphase-promot 95.2 0.17 3.6E-06 34.6 7.4 27 260-286 44-70 (94)
348 PRK13184 pknD serine/threonine 95.1 0.51 1.1E-05 46.3 12.9 133 193-328 481-628 (932)
349 PF12862 Apc5: Anaphase-promot 95.1 0.16 3.5E-06 34.7 7.2 54 199-252 10-70 (94)
350 COG3629 DnrI DNA-binding trans 94.9 0.42 9.2E-06 39.7 10.3 62 258-319 154-215 (280)
351 KOG0529|consensus 94.9 1.9 4.2E-05 37.5 14.3 134 166-301 41-193 (421)
352 PRK13184 pknD serine/threonine 94.9 0.41 9E-06 46.9 11.5 106 228-334 480-595 (932)
353 PF15015 NYD-SP12_N: Spermatog 94.8 0.25 5.4E-06 42.8 8.6 91 193-283 182-288 (569)
354 COG2912 Uncharacterized conser 94.7 0.36 7.7E-06 39.6 9.2 73 223-295 181-253 (269)
355 PF11207 DUF2989: Protein of u 94.6 0.59 1.3E-05 36.6 9.7 74 202-277 121-198 (203)
356 PF04053 Coatomer_WDAD: Coatom 94.6 0.88 1.9E-05 40.9 12.2 101 164-283 272-373 (443)
357 KOG1464|consensus 94.6 1.6 3.4E-05 35.8 12.3 157 166-322 40-222 (440)
358 KOG1538|consensus 94.4 0.9 1.9E-05 41.9 11.7 50 265-317 781-830 (1081)
359 PF11207 DUF2989: Protein of u 94.3 0.79 1.7E-05 35.9 9.9 75 168-243 121-198 (203)
360 PF10579 Rapsyn_N: Rapsyn N-te 94.2 0.42 9.1E-06 31.0 6.8 18 236-253 19-36 (80)
361 PF07720 TPR_3: Tetratricopept 94.2 0.21 4.5E-06 27.1 4.7 20 294-313 4-23 (36)
362 PF10373 EST1_DNA_bind: Est1 D 94.2 0.24 5.2E-06 41.5 7.7 62 206-269 1-62 (278)
363 KOG0890|consensus 94.1 2 4.4E-05 45.7 14.6 137 184-324 1667-1837(2382)
364 KOG4014|consensus 94.0 2.2 4.7E-05 32.9 13.2 169 131-320 47-233 (248)
365 PF07721 TPR_4: Tetratricopept 94.0 0.1 2.2E-06 25.8 3.0 13 264-276 8-20 (26)
366 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.85 1.8E-05 29.6 7.8 59 262-320 11-72 (80)
367 PF07720 TPR_3: Tetratricopept 93.9 0.32 7E-06 26.3 5.0 21 259-279 3-23 (36)
368 PF15015 NYD-SP12_N: Spermatog 93.8 0.35 7.7E-06 42.0 7.7 88 126-213 183-288 (569)
369 PF10373 EST1_DNA_bind: Est1 D 93.7 0.36 7.8E-06 40.5 7.7 62 242-303 1-62 (278)
370 COG4941 Predicted RNA polymera 93.6 4.1 8.9E-05 34.6 17.4 133 202-337 271-411 (415)
371 PF07721 TPR_4: Tetratricopept 93.5 0.14 3E-06 25.3 3.1 24 292-315 2-25 (26)
372 PF10516 SHNi-TPR: SHNi-TPR; 93.5 0.21 4.5E-06 27.4 3.9 27 259-285 3-29 (38)
373 COG3947 Response regulator con 93.1 0.51 1.1E-05 39.0 7.2 60 259-318 281-340 (361)
374 KOG0686|consensus 92.9 1.1 2.3E-05 38.9 9.1 97 188-284 151-256 (466)
375 smart00299 CLH Clathrin heavy 92.9 2.8 6.1E-05 30.9 12.3 33 132-164 20-52 (140)
376 COG5536 BET4 Protein prenyltra 92.9 3.3 7.2E-05 34.2 11.3 51 208-260 95-147 (328)
377 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.22 4.9E-06 27.3 3.3 28 189-216 3-30 (38)
378 COG3947 Response regulator con 92.7 2.9 6.2E-05 34.8 10.9 61 224-284 280-340 (361)
379 KOG0546|consensus 92.7 0.21 4.5E-06 42.3 4.7 127 192-335 227-353 (372)
380 PF10255 Paf67: RNA polymerase 92.6 0.89 1.9E-05 40.0 8.6 27 258-284 165-191 (404)
381 KOG2114|consensus 92.6 2.4 5.2E-05 40.4 11.5 19 227-245 435-453 (933)
382 PF04190 DUF410: Protein of un 92.6 5.3 0.00012 33.2 15.5 143 158-320 15-170 (260)
383 PF00244 14-3-3: 14-3-3 protei 92.2 5.6 0.00012 32.5 12.9 42 122-163 4-46 (236)
384 PF09670 Cas_Cas02710: CRISPR- 92.0 4.5 9.8E-05 35.7 12.3 63 120-182 132-198 (379)
385 PF11817 Foie-gras_1: Foie gra 91.9 2.5 5.4E-05 34.8 10.1 60 258-317 179-244 (247)
386 TIGR03504 FimV_Cterm FimV C-te 91.8 0.66 1.4E-05 26.4 4.6 25 295-319 3-27 (44)
387 COG4941 Predicted RNA polymera 91.6 7.8 0.00017 33.0 17.1 159 135-296 212-404 (415)
388 KOG0546|consensus 91.5 0.37 8.1E-06 40.8 4.8 130 157-303 226-355 (372)
389 PRK11619 lytic murein transgly 91.5 13 0.00029 35.4 20.8 56 264-319 319-374 (644)
390 TIGR03504 FimV_Cterm FimV C-te 91.4 0.36 7.9E-06 27.5 3.3 26 122-147 2-27 (44)
391 KOG1463|consensus 91.3 8.4 0.00018 32.9 12.4 164 125-288 134-318 (411)
392 COG3014 Uncharacterized protei 91.2 8.8 0.00019 32.8 13.3 42 138-179 40-84 (449)
393 COG4455 ImpE Protein of avirul 91.0 6.8 0.00015 31.3 11.8 61 194-256 8-68 (273)
394 PF09670 Cas_Cas02710: CRISPR- 90.8 9.6 0.00021 33.7 13.2 60 157-216 135-198 (379)
395 smart00386 HAT HAT (Half-A-TPR 90.7 0.91 2E-05 23.3 4.4 28 306-333 2-29 (33)
396 KOG1463|consensus 90.5 10 0.00022 32.4 13.2 165 158-322 133-318 (411)
397 PF13041 PPR_2: PPR repeat fam 90.5 1.7 3.8E-05 25.3 5.9 28 224-251 4-31 (50)
398 PF12854 PPR_1: PPR repeat 90.4 0.9 1.9E-05 24.1 4.2 27 290-316 6-32 (34)
399 COG5159 RPN6 26S proteasome re 90.4 9.4 0.0002 31.8 14.2 57 261-317 129-191 (421)
400 PF12739 TRAPPC-Trs85: ER-Golg 90.3 13 0.00028 33.4 15.5 31 120-150 209-239 (414)
401 smart00386 HAT HAT (Half-A-TPR 90.3 1.1 2.3E-05 23.0 4.5 27 272-298 2-28 (33)
402 PF13041 PPR_2: PPR repeat fam 90.2 1.9 4.2E-05 25.1 5.9 29 258-286 4-32 (50)
403 KOG4014|consensus 90.2 7.2 0.00016 30.2 15.4 155 150-321 31-198 (248)
404 PF11817 Foie-gras_1: Foie gra 90.1 4.4 9.5E-05 33.4 9.9 23 227-249 182-204 (247)
405 COG1747 Uncharacterized N-term 89.6 16 0.00034 33.2 18.7 167 120-290 100-292 (711)
406 KOG1538|consensus 89.6 5.7 0.00012 36.9 10.7 50 231-283 781-830 (1081)
407 PF10255 Paf67: RNA polymerase 89.4 6.3 0.00014 34.9 10.7 59 260-319 125-192 (404)
408 COG4455 ImpE Protein of avirul 89.0 5.7 0.00012 31.7 9.0 63 230-292 8-70 (273)
409 KOG4151|consensus 88.9 2.4 5.2E-05 40.0 8.1 102 192-293 58-163 (748)
410 KOG2114|consensus 88.8 5 0.00011 38.4 10.0 55 127-182 342-397 (933)
411 PF12854 PPR_1: PPR repeat 88.8 1.5 3.2E-05 23.3 4.2 26 257-282 7-32 (34)
412 KOG0687|consensus 88.7 13 0.00028 31.6 11.3 101 153-253 104-211 (393)
413 cd02682 MIT_AAA_Arch MIT: doma 88.6 3.1 6.7E-05 26.9 6.2 24 261-284 10-33 (75)
414 PF09797 NatB_MDM20: N-acetylt 88.5 6.6 0.00014 34.5 10.5 45 169-213 199-243 (365)
415 PF12739 TRAPPC-Trs85: ER-Golg 88.1 19 0.00041 32.3 15.4 154 156-323 211-402 (414)
416 smart00299 CLH Clathrin heavy 88.0 8.8 0.00019 28.2 13.9 121 162-303 16-137 (140)
417 COG5536 BET4 Protein prenyltra 87.5 15 0.00033 30.5 11.2 162 137-300 50-236 (328)
418 PHA02537 M terminase endonucle 87.2 14 0.00031 29.9 10.7 35 303-338 190-224 (230)
419 COG5159 RPN6 26S proteasome re 87.2 16 0.00036 30.5 16.8 199 123-321 7-236 (421)
420 KOG0276|consensus 86.7 20 0.00044 33.3 12.1 27 187-213 666-692 (794)
421 COG5187 RPN7 26S proteasome re 86.6 18 0.00039 30.3 11.9 102 187-288 115-223 (412)
422 KOG1920|consensus 85.9 9.4 0.0002 38.2 10.4 24 261-284 1003-1026(1265)
423 PF09797 NatB_MDM20: N-acetylt 85.7 7.6 0.00017 34.1 9.3 44 203-248 199-242 (365)
424 COG5187 RPN7 26S proteasome re 85.7 20 0.00043 30.0 12.3 123 132-254 88-223 (412)
425 PF01535 PPR: PPR repeat; Int 85.6 1.7 3.7E-05 21.9 3.3 23 227-249 4-26 (31)
426 KOG4521|consensus 85.4 45 0.00097 33.8 16.1 166 153-322 920-1134(1480)
427 PF01535 PPR: PPR repeat; Int 85.3 1.7 3.7E-05 21.9 3.2 25 294-318 3-27 (31)
428 KOG0687|consensus 84.3 25 0.00054 30.0 13.8 101 187-287 104-211 (393)
429 PF11846 DUF3366: Domain of un 84.3 6.2 0.00013 31.0 7.4 48 275-323 129-176 (193)
430 PF13226 DUF4034: Domain of un 83.1 21 0.00047 29.8 10.2 34 274-307 116-149 (277)
431 KOG0276|consensus 83.0 13 0.00027 34.5 9.2 110 190-317 617-747 (794)
432 PRK09687 putative lyase; Provi 82.2 29 0.00063 29.2 23.0 199 120-334 69-277 (280)
433 TIGR00756 PPR pentatricopeptid 82.0 4.1 8.8E-05 21.0 4.0 26 294-319 3-28 (35)
434 PF14863 Alkyl_sulf_dimr: Alky 82.0 8.7 0.00019 28.4 6.8 51 257-307 70-120 (141)
435 PF09205 DUF1955: Domain of un 82.0 14 0.00031 27.0 7.5 51 235-285 98-148 (161)
436 PF04348 LppC: LppC putative l 81.9 0.43 9.4E-06 44.1 0.0 167 154-329 25-203 (536)
437 TIGR00756 PPR pentatricopeptid 81.9 3.9 8.4E-05 21.0 3.9 24 227-250 4-27 (35)
438 PRK11619 lytic murein transgly 81.6 51 0.0011 31.6 21.6 188 125-317 247-465 (644)
439 PF13226 DUF4034: Domain of un 81.4 27 0.00059 29.2 10.2 127 195-339 8-147 (277)
440 cd02680 MIT_calpain7_2 MIT: do 81.1 3 6.5E-05 27.0 3.6 16 166-181 19-34 (75)
441 TIGR02710 CRISPR-associated pr 80.5 40 0.00087 29.7 12.8 21 196-216 139-159 (380)
442 PF10952 DUF2753: Protein of u 80.4 11 0.00024 27.0 6.4 26 227-252 5-30 (140)
443 KOG3783|consensus 80.3 48 0.001 30.4 19.2 179 136-319 250-477 (546)
444 PF14863 Alkyl_sulf_dimr: Alky 80.3 8.7 0.00019 28.5 6.3 51 223-273 70-120 (141)
445 KOG2063|consensus 80.1 65 0.0014 31.9 17.4 163 122-285 507-712 (877)
446 COG3014 Uncharacterized protei 79.6 39 0.00085 29.1 13.5 34 291-324 213-246 (449)
447 KOG4279|consensus 79.4 15 0.00033 35.0 8.7 177 152-334 200-406 (1226)
448 KOG4279|consensus 79.2 17 0.00037 34.7 8.9 54 132-185 256-319 (1226)
449 KOG0128|consensus 78.3 69 0.0015 31.2 22.8 213 120-334 114-355 (881)
450 KOG0128|consensus 78.1 70 0.0015 31.1 19.9 152 133-287 93-261 (881)
451 PF13812 PPR_3: Pentatricopept 78.1 7.1 0.00015 20.0 4.1 25 226-250 4-28 (34)
452 KOG0686|consensus 77.9 49 0.0011 29.3 13.9 96 223-318 150-256 (466)
453 cd02680 MIT_calpain7_2 MIT: do 77.6 5.7 0.00012 25.7 4.1 17 200-216 19-35 (75)
454 PF14929 TAF1_subA: TAF RNA Po 77.6 62 0.0013 30.2 14.6 160 170-336 275-466 (547)
455 PF06957 COPI_C: Coatomer (COP 75.8 41 0.00089 30.1 10.1 30 299-328 308-337 (422)
456 KOG2062|consensus 75.7 67 0.0015 30.9 11.6 174 149-332 55-249 (929)
457 PHA02537 M terminase endonucle 75.5 22 0.00048 28.8 7.8 22 269-290 190-211 (230)
458 PF04190 DUF410: Protein of un 75.2 47 0.001 27.6 21.8 92 122-213 13-116 (260)
459 KOG1920|consensus 75.1 41 0.0009 34.0 10.6 18 229-246 945-962 (1265)
460 PF10952 DUF2753: Protein of u 74.9 16 0.00034 26.2 5.9 58 122-179 4-76 (140)
461 KOG4151|consensus 74.5 14 0.0003 35.2 7.2 108 158-267 58-171 (748)
462 KOG2063|consensus 74.3 96 0.0021 30.8 15.2 164 156-319 507-712 (877)
463 PF11846 DUF3366: Domain of un 74.2 13 0.00028 29.2 6.3 32 223-254 144-175 (193)
464 cd02681 MIT_calpain7_1 MIT: do 74.1 7.7 0.00017 25.2 4.0 17 165-181 18-34 (76)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 73.1 33 0.00071 24.9 12.9 114 135-250 1-126 (126)
466 smart00101 14_3_3 14-3-3 homol 73.1 51 0.0011 27.1 15.5 56 123-178 5-64 (244)
467 PF04348 LppC: LppC putative l 71.6 1.3 2.8E-05 41.1 0.0 112 173-285 9-126 (536)
468 PF09205 DUF1955: Domain of un 71.6 38 0.00081 24.9 9.9 53 268-320 97-149 (161)
469 KOG2561|consensus 71.4 28 0.0006 31.0 7.8 96 156-251 166-295 (568)
470 PRK12798 chemotaxis protein; R 71.4 75 0.0016 28.3 21.6 192 126-321 87-287 (421)
471 cd02679 MIT_spastin MIT: domai 71.3 10 0.00022 24.8 4.1 15 271-285 22-36 (79)
472 cd02683 MIT_1 MIT: domain cont 70.6 25 0.00054 22.9 5.9 25 261-285 10-34 (77)
473 PRK15490 Vi polysaccharide bio 69.7 60 0.0013 30.4 10.0 79 199-281 20-98 (578)
474 cd02682 MIT_AAA_Arch MIT: doma 69.6 17 0.00037 23.5 4.8 25 226-250 9-33 (75)
475 smart00777 Mad3_BUB1_I Mad3/BU 69.2 36 0.00078 24.6 6.9 42 206-247 82-123 (125)
476 PF04097 Nic96: Nup93/Nic96; 69.1 1.1E+02 0.0024 29.3 14.8 25 301-326 515-539 (613)
477 TIGR03362 VI_chp_7 type VI sec 68.8 74 0.0016 27.2 16.9 156 154-320 101-279 (301)
478 KOG0889|consensus 68.4 1.5E+02 0.0032 34.4 13.6 45 223-267 2812-2856(3550)
479 KOG1811|consensus 67.1 1.1E+02 0.0025 28.7 11.5 87 197-288 566-655 (1141)
480 PF12921 ATP13: Mitochondrial 65.2 50 0.0011 23.9 8.4 29 225-253 4-32 (126)
481 TIGR02710 CRISPR-associated pr 65.0 1E+02 0.0022 27.3 13.1 55 124-178 135-196 (380)
482 cd02684 MIT_2 MIT: domain cont 64.2 16 0.00034 23.7 4.0 16 166-181 19-34 (75)
483 PF02064 MAS20: MAS20 protein 64.1 23 0.00051 25.4 5.1 32 296-327 68-99 (121)
484 COG4259 Uncharacterized protei 63.7 45 0.00099 22.9 6.6 35 292-326 73-107 (121)
485 PRK15490 Vi polysaccharide bio 63.6 45 0.00098 31.2 8.0 79 131-211 20-98 (578)
486 KOG1497|consensus 63.3 97 0.0021 26.6 10.2 99 187-285 103-212 (399)
487 PF04212 MIT: MIT (microtubule 62.7 36 0.00077 21.4 6.0 25 261-285 9-33 (69)
488 PF04212 MIT: MIT (microtubule 62.5 26 0.00056 22.0 4.8 20 229-248 11-30 (69)
489 TIGR03362 VI_chp_7 type VI sec 61.7 1E+02 0.0022 26.3 17.5 148 131-286 111-279 (301)
490 KOG2561|consensus 61.7 60 0.0013 29.1 7.9 27 190-216 166-192 (568)
491 KOG4521|consensus 60.9 99 0.0022 31.5 10.0 118 187-308 920-1071(1480)
492 smart00777 Mad3_BUB1_I Mad3/BU 60.4 62 0.0014 23.4 6.9 53 223-281 69-123 (125)
493 smart00671 SEL1 Sel1-like repe 59.9 23 0.0005 18.3 4.0 13 168-180 20-32 (36)
494 PF04840 Vps16_C: Vps16, C-ter 59.5 1.2E+02 0.0025 26.3 10.5 121 109-248 167-287 (319)
495 PF15469 Sec5: Exocyst complex 59.2 82 0.0018 24.4 8.3 28 305-332 153-180 (182)
496 PF08626 TRAPPC9-Trs120: Trans 58.7 2.4E+02 0.0052 29.6 13.7 83 238-320 360-474 (1185)
497 PF05053 Menin: Menin; InterP 58.7 1.3E+02 0.0028 28.1 9.7 29 257-285 318-346 (618)
498 PF04090 RNA_pol_I_TF: RNA pol 58.3 92 0.002 24.7 11.3 33 156-188 44-76 (199)
499 cd02681 MIT_calpain7_1 MIT: do 57.9 32 0.00068 22.4 4.5 19 267-285 16-34 (76)
500 smart00745 MIT Microtubule Int 57.6 28 0.00061 22.4 4.4 20 266-285 17-36 (77)
No 1
>KOG1129|consensus
Probab=100.00 E-value=1.6e-46 Score=298.07 Aligned_cols=335 Identities=27% Similarity=0.307 Sum_probs=303.1
Q ss_pred CcchhhhhhcccccccccccchhhccccccccCCCCCCccCCcccCC--CCCCCCCCCCCCCCcceeccCCCccCCCCch
Q psy16611 1 MRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTA--PALTSRPRTESGRPVSGVVRPGTLASRGGTL 78 (341)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
|||||++||+||+++++.|+++.++|.+.|++.+|||+|+++|.++. +++..+|.+..|+|++|+++|....+++|++
T Consensus 45 mraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm 124 (478)
T KOG1129|consen 45 MRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSM 124 (478)
T ss_pred HHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccH
Confidence 68999999999999999999999999999999999999999999887 6788899999999999999999999999999
Q ss_pred HhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHH--------------------------------
Q psy16611 79 EQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLA-------------------------------- 126 (341)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------------------------- 126 (341)
++|+++.|.+.+++++++.+++..|+|++++...++.+|+..+++++-
T Consensus 125 ~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~ 204 (478)
T KOG1129|consen 125 AQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQA 204 (478)
T ss_pred HhhccCccccccccccccccchhhhhhhhhhhccCCcceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888887765
Q ss_pred --------------------------HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy16611 127 --------------------------KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 180 (341)
Q Consensus 127 --------------------------~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 180 (341)
.+|++.|-+.+|.+.++..++..| .++.+..++.+|....+.+.|+..|.+.+
T Consensus 205 ~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 205 VLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 788888889999999999888877 67888888888988888899999999888
Q ss_pred HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ 260 (341)
Q Consensus 181 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 260 (341)
...|.+...+...+.++...+++++|.++|+.+++.+|.+ .++...+|..|+..++.+-|+.+|++.+.+.-.+++.+
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 8889888888888999999999999999999999998888 88888888888888888999999999988888889999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAASSPY---LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
+++|.+++..++++-++..|++++....+ -.++|+++|.+....|++.-|..+|+-++..+++|.+++.+++.+...
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence 99999999999999999999999886542 346899999999999999999999999999999999999988887765
Q ss_pred h
Q psy16611 338 F 338 (341)
Q Consensus 338 ~ 338 (341)
-
T Consensus 442 ~ 442 (478)
T KOG1129|consen 442 S 442 (478)
T ss_pred c
Confidence 3
No 2
>KOG4626|consensus
Probab=100.00 E-value=7.6e-33 Score=237.08 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=184.6
Q ss_pred CCCchHhhhcccccccccCCccchhHhhhhhhh----------------hhcccCCCCCchhHhhhcHHHHHHHcCCchH
Q psy16611 74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLGT----------------ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPM 137 (341)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (341)
..|.+-.++..+..+.+..|.-. ..++.+|. .++...|++. .++-++|.+|+.+|..+-
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---VAHGNLACIYYEQGLLDL 304 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch---hhccceEEEEeccccHHH
Confidence 34555555555555555555432 23444442 1233344444 556666677777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16611 138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 217 (341)
Q Consensus 138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 217 (341)
|+..|+++++..|+.++++.++|..+...|+..+|..+|.+++.+.|+.+++.++||.+|..+|.+++|...|+++++..
T Consensus 305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHH
Q psy16611 218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQ 297 (341)
Q Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 297 (341)
|.. ..++.++|.+|.++|++++|+.+|++++++.|..++++.++|..|..+|+...|+.+|.+++.++|...+++.+|
T Consensus 385 p~~--aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 385 PEF--AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hhh--hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 777 777777777777777777777777777777777777777777777777777777777777777777777777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
|.+|...|+..+|+..|++++.+.|+.+++...+..+.+.
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 8888888888888888888888888887777776665543
No 3
>KOG4626|consensus
Probab=100.00 E-value=6.3e-33 Score=237.56 Aligned_cols=215 Identities=18% Similarity=0.234 Sum_probs=130.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.++++||.+|...+.+++|+..|.+++...|+++.++.++|.+|+.+|..+-|+..|++++++.|+.++++.++|..+-.
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555566666666666666666
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|+..+|..+|.+++.+.|.. +++.+++|.+|..+|.+++|..+|+++++..|..+.++.+||.+|.++|++++|+.+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred ccchHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 666666666666666666665 666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
|++++.+.|...+++.++|..|..+|+...|+.+|.+++.++|...++...|+.+.+
T Consensus 411 YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 411 YKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666655544
No 4
>KOG1126|consensus
Probab=99.95 E-value=2.2e-27 Score=205.68 Aligned_cols=218 Identities=16% Similarity=0.238 Sum_probs=207.7
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHH----------------------------------HhCCCCHHHHHHHHHHHHhc
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLIL----------------------------------KRDATCMEAIACIGVNHFYN 166 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l----------------------------------~~~~~~~~~~~~la~~~~~~ 166 (341)
....+|..|+..++|++|..+|+.+- ..+|+.++.|..+|.||..+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 35567899999999999999998763 34566799999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16611 167 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (341)
++++.|+++|+++++++|....+|..+|.-+.....++.|..+|++++..+|.+ ..+|+.+|.+|.++++++.|.-+|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh--YnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH--YNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--hHHHHhhhhheeccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 247 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
++|++++|.+....+.+|.++.+.|+.++|+.+|++|+.++|.++-..+..+.+++.++++++|+..+++..++.|++..
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS 592 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy16611 327 SWDILRKLEQYFSY 340 (341)
Q Consensus 327 ~~~~l~~~~~~~~~ 340 (341)
+++.++++.+.+++
T Consensus 593 v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 593 VFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999887754
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=1.3e-25 Score=208.50 Aligned_cols=221 Identities=9% Similarity=0.008 Sum_probs=177.3
Q ss_pred CchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16611 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 195 (341)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 195 (341)
+.....+..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33346677888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
+++..|++++|+.+|++++.++|++ ...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 8888888888888888888888888 88888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCchhHH------HHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 276 ASTYLQAAAASSPYLYETH------YNQAVI-SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~------~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
|+..|++++.+.|++...+ .+.+.+ +...|++++|+.++++++.++|++..++..++.+....
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 8888888888877643322 222333 33468888888888888888888877777777665543
No 6
>KOG1126|consensus
Probab=99.95 E-value=1.3e-26 Score=200.91 Aligned_cols=213 Identities=15% Similarity=0.187 Sum_probs=207.6
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+..+|+.| .+|-.+|.+|..+++++.|+++|+++++++|.+.-+|..+|.-+....++|+|..+|+.++..+|.+..
T Consensus 414 i~~~~~sP---esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 414 IDTDPNSP---ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HhhCCCCc---HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 45678888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (341)
+|+.+|.+|.++++++.|.-+|++|++++|.+ ......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
..+++++|+..+++..++.|+...+++.+|.+|.+.|+.+.|+..|.-|.+++|.-..
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999999999999999999999999999999999999998665
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.1e-24 Score=200.46 Aligned_cols=213 Identities=13% Similarity=0.067 Sum_probs=195.0
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+...|..+ ..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..
T Consensus 358 l~l~P~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IELDPRVT---QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 44456555 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH------HHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS------QNN 262 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~ 262 (341)
.+..+|.++...|++++|+..|++++...|.+ +.++..+|.++...|++++|+..|++++.+.|..... +..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999875332 223
Q ss_pred HHHHH-HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 263 LAVLE-AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 263 l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.+.++ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 33334 44699999999999999999999999999999999999999999999999999887554
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=6.4e-24 Score=197.05 Aligned_cols=221 Identities=12% Similarity=-0.019 Sum_probs=125.5
Q ss_pred ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16611 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 189 (341)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 189 (341)
...|+++ .++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|++...
T Consensus 104 ~~~P~~~---~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a 180 (656)
T PRK15174 104 AVNVCQP---EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM 180 (656)
T ss_pred HhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH
Confidence 3455555 5566666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
+..++. +...|++++|+..+++++...|.. .......++.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 181 ~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 181 IATCLS-FLNKSRLPEDHDLARALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ 258 (656)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 543321 333344444443333333332211 011222334455555666666666666666666666666666666666
Q ss_pred hCCHHH----HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 270 EGHIER----ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 270 ~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.|++++ |+..|+++++++|++..++..+|.++...|++++|+..+++++.++|+++.++..++.+.
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666654 566666666666666666666666666666666666666666666666666555555544
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.7e-23 Score=194.23 Aligned_cols=249 Identities=13% Similarity=-0.000 Sum_probs=177.4
Q ss_pred CCCchHhhhcccccccccCCccchhHhhhhhhh----------------hhcccCCCCCchhHhhhcHHHHHHHcCCchH
Q psy16611 74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLGT----------------ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPM 137 (341)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (341)
..|..++|+..+++.....|..... ...++. .++...|+++ ..+..++.++...|++++
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a--~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~---~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPED--VLLVASVLLKSKQYATVADLAEQAWLAFSGNS---QIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCChHH
Confidence 4677888888887766666655422 122221 2344567777 778899999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
|+..+++++...|++..++..++. +...|++++|+..+++++...|. .......++.++...|++++|+..|++++..
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999888766543 66677777777777777766542 2333445566667777777777777777777
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 217 ALNENAADVWYNISHVAIGISDTRL----AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
+|++ ..+++.+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|++..
T Consensus 242 ~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 242 GLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred CCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 7776 7777777777777777764 677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
++..+|.++...|++++|+..|++++..+|++......
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 77777777777777777777777777777766544433
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.93 E-value=2.9e-23 Score=158.52 Aligned_cols=211 Identities=19% Similarity=0.139 Sum_probs=197.3
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..+++.||.-|++.|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.+|++++|...|++++... .. .....|-|+|.|..+.|+++.|.++|+++++.+|+.+.....++..++..|+|-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999853 22 448899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
.++++.....+-..+.+.....+-...|+-+.+..+=.+.....|...+....
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 99999998888778888888888999999999999988888999998776543
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.93 E-value=9.9e-23 Score=166.72 Aligned_cols=204 Identities=21% Similarity=0.182 Sum_probs=190.6
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.|++++...|.+...+..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
..|++++|+..+++++...+.......+..+|.++...|++++|...++++++.+|++...+..+|.++...|++++|+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998643222277899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
.+++++...|.+...+..++.++...|+.++|..+.+.+....|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999888888888999999999999999999888776654
No 12
>KOG1155|consensus
Probab=99.93 E-value=2.3e-23 Score=173.59 Aligned_cols=217 Identities=16% Similarity=0.179 Sum_probs=202.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
...--+|..|...++.++|+.+|+++++++|....+|..+|+-|..+++...|++.|++|++++|.+..+|+.||+.|.-
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 44555678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
++...=|+-+|++++...|.+ ...|..+|.||.+.++.++|+++|++++.....+..++..+|.+|.+++++.+|..+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHH-------hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 280 LQAAAA-------SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 280 ~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
|++.++ ..|....+...|+..+.+.+++++|..+..+++.-++...++...+..+.+..
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 999998 34555667778999999999999999999999999888888888888887654
No 13
>KOG1125|consensus
Probab=99.92 E-value=1.6e-23 Score=179.15 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=188.9
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 201 (341)
-+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.++...++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhh-----------------------------------------ccccchHHHHHHHHHHHHhcCCHH
Q psy16611 202 QYDMVVTCFERALSL-----------------------------------------ALNENAADVWYNISHVAIGISDTR 240 (341)
Q Consensus 202 ~~~~A~~~~~~al~~-----------------------------------------~~~~~~~~~~~~la~~~~~~g~~~ 240 (341)
.-.+|..++.+.+.. .|....+++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 999999999888765 221112677888999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 241 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+|+.+|+.||...|++...|+.||-.+..-.+.++|+..|.+|+++.|....++++||.++..+|.|++|.++|-.||.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q psy16611 321 HPG 323 (341)
Q Consensus 321 ~p~ 323 (341)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 765
No 14
>KOG1173|consensus
Probab=99.92 E-value=4.2e-23 Score=175.94 Aligned_cols=231 Identities=18% Similarity=0.162 Sum_probs=213.0
Q ss_pred hhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy16611 101 TIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 180 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 180 (341)
..-+|..-+...|+.+ .+|+.+|..|+..|++.+|..+|.++..++|....+|...|..+...|+.+.|+.+|..|-
T Consensus 297 Lf~lsh~LV~~yP~~a---~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 297 LFLLSHKLVDLYPSKA---LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred HHHHHHHHHHhCCCCC---cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 3444455566778887 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------
Q psy16611 181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID------- 253 (341)
Q Consensus 181 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 253 (341)
++-|........+|.-|...+++..|..+|.+++.+.|.+ +-++..+|.+.+..+.|.+|..+|+.++..-
T Consensus 374 rl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D--plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 374 RLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD--PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999 9999999999999999999999999999432
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
+.....+.++|.++.+++++++|+.+|++++.+.|.+..++..+|.+|..+|+++.|+.+|.+++.+.|++..+...|..
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 12345789999999999999999999999999999999999999999999999999999999999999999888777765
Q ss_pred HHH
Q psy16611 334 LEQ 336 (341)
Q Consensus 334 ~~~ 336 (341)
.-+
T Consensus 532 aie 534 (611)
T KOG1173|consen 532 AIE 534 (611)
T ss_pred HHH
Confidence 543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.4e-22 Score=192.69 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=192.3
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 200 (341)
..+.++.++...|++++|+..|++++...|. ...++.+|.++...|++++|+.+|+++++.+|.....+..++......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 3666677778999999999999998777555 456788899999999999999999999999999888888777777788
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 280 (341)
|++++|+..|+++++.+| + ..++.++|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|
T Consensus 590 Gr~~eAl~~~~~AL~l~P-~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAP-S--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999 4 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 281 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
+++++++|+++.+++++|.++..+|++++|+.+|++++++.|++.......+.+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999777766555543
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.92 E-value=1.5e-22 Score=170.53 Aligned_cols=213 Identities=14% Similarity=0.093 Sum_probs=176.8
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
..|++++|+..|+++++.+|++ +..... ..+....+++++|+..|.+.+...+.. .|. .+.++...|++.++ .
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~--~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPND--PYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC--HHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-H
Confidence 9999999999999999999998 532211 223456789999999998877554322 222 35566667776443 2
Q ss_pred HHHHH-------HHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Q psy16611 279 YLQAA-------AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP-GHSYSWDILRKLEQYF 338 (341)
Q Consensus 279 ~~~~a-------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 338 (341)
.++.+ .++.|....+|+++|.++...|++++|+.+|+++++.+| ++.+.++.+..+....
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 33333 355667778999999999999999999999999999996 7788877777666553
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.92 E-value=6.4e-23 Score=187.41 Aligned_cols=200 Identities=12% Similarity=0.027 Sum_probs=183.5
Q ss_pred CCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16611 133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN---------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 203 (341)
Q Consensus 133 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 203 (341)
+++++|+.+|+++++.+|+++.++..+|.+|... +++++|+..++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3467999999999999999999999999887643 3489999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 204 DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
++|+.+|+++++++|++ +.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..++++
T Consensus 355 ~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999888777787888899999999999999
Q ss_pred HHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 284 AASS-PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 284 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
+... |+++..+..+|.++..+|++++|...++++....|++..++..+..+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 9875 77888899999999999999999999999988888877766666543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2e-22 Score=198.93 Aligned_cols=209 Identities=12% Similarity=0.093 Sum_probs=190.3
Q ss_pred cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH--------------H
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE--------------L 189 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~ 189 (341)
.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 34788999999999999999999999999999999999999999999999999999999997642 1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL--- 266 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--- 266 (341)
...+|.++...|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~--~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTD--SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 2345888999999999999999999999999 99999999999999999999999999999999987766555443
Q ss_pred ---------------------------------------HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16611 267 ---------------------------------------EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307 (341)
Q Consensus 267 ---------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 307 (341)
+...|++++|+..|+++++++|+++.+++.++.+|...|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 308 QESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 308 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
++|+..|+++++..|+++.+++.++.+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999888766544
No 19
>KOG1155|consensus
Probab=99.91 E-value=2.1e-22 Score=167.85 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=150.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHH---H-------------------------------HHHHHHHHHhcCChH
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCME---A-------------------------------IACIGVNHFYNDQPE 170 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~-------------------------------~~~la~~~~~~~~~~ 170 (341)
.|.+.+.+.|+++|+..|+.+.+.+|-..+ . ...+|+.|...++.+
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 346667778888888888888877775211 1 112455555667778
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 171 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
+|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+ ..+|+.+|++|.-++...=|+-+|++++
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888 8888888888888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 251 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 251 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+..|.+...|..||.+|.+.++.++|+++|++++.....+..++..||.+|.+.++.++|..+|++.++.
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888877777778888888888888888888888887764
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.1e-21 Score=190.89 Aligned_cols=221 Identities=16% Similarity=0.160 Sum_probs=199.8
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF 190 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 190 (341)
..|.++ ..+..+|.++...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|++++...|.+..++
T Consensus 460 ~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 460 KQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred hCCCCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 345555 67888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
..++.++...|++++|+..+++++..+|.+ ...+..++.++...|++++|+..++++++..|.+...|..+|.++...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQE--IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999888 888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 271 GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 271 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
|++++|+..|+++++..|.+..++..++.++...|++++|+..|++++..+|++..++..+..+..
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888877766554
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.1e-21 Score=186.43 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=197.3
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...+.++|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..+|.++.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH
Confidence 3889999999987 899999999999999999754 46667888889999999999999988776654 55789999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
..|++++|+.+|+++++..|.. ...+..++......|++++|+..|+++++.+|+ ..++.++|.++.+.|++++|+.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999988 778878888888889999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
.|++++.++|++..++.++|.++...|++++|+..|+++++++|+++.++..++.+....+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999998877654
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=8.2e-22 Score=194.55 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=147.5
Q ss_pred hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHH-------------------------
Q psy16611 108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN------------------------- 162 (341)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~------------------------- 162 (341)
++...|+++ .+++.+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 377 Al~~~P~~~---~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDS---YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 344566666 6788888999999999999999999999888887766554443
Q ss_pred -----------------HHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHH
Q psy16611 163 -----------------HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 225 (341)
Q Consensus 163 -----------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 225 (341)
+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++..|.+ +..
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~--~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND--PEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHH
Confidence 4456888899999999999999988888999999999999999999999888888776 555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH----------------------------------------HhcCCCCHHHHHHHHH
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLA----------------------------------------LSIDSSHGLSQNNLAV 265 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~l~~ 265 (341)
++.++..+...+++++|+..++++ ++..|.++..+..+|.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 544444444444444443333221 1123444445555555
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
++...|++++|+..|+++++.+|++..++..++.+|...|++++|+..|+++++..|++...+..++.+
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555544444443
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.3e-21 Score=171.19 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=176.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLA 194 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la 194 (341)
..+..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45677888888889999999999998888888888888889899889999999999998888777643 2456788
Q ss_pred HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCH
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHI 273 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~ 273 (341)
.++...|++++|+.+|+++++..|.. ..+++.+|.++...|++++|++.+++++..+|.+ ..++..++.+|...|++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 88888899999999999998888888 8888889999999999999999999998887765 45677888888899999
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
++|+..++++++..|+.. .+..++.++.+.|++++|+..++++++..|++......+..
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 999999999988888764 44788888999999999999999999888888766544443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.3e-21 Score=172.89 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=196.0
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 184 (341)
+..+|++. ..+..+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|+++++..|
T Consensus 62 l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 62 LKVDPETV---ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred HhcCcccH---HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 34455554 778899999999999999999999999864332 35688999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN---AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN 261 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 261 (341)
.+..++..++.++...|++++|++.++++++..|.+. ....+..+|.++...|++++|+..|+++++.+|++..++.
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 218 (389)
T PRK11788 139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI 218 (389)
T ss_pred chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence 9999999999999999999999999999999887651 1345678999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.+|.++...|++++|+..|+++++.+|.+ ..++..++.+|...|++++|+..++++++..|+.... ..++.+.
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~ 292 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL 292 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence 99999999999999999999999998876 3577889999999999999999999999999987554 4555443
No 25
>KOG0547|consensus
Probab=99.91 E-value=2.1e-22 Score=168.85 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=179.3
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..+....|..++-.|++-.|...|+.+|.++|.+...|..++.+|....+.++....|.++..++|+++++|+..|++++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 45666677788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
-++++++|+.-|++++.++|++ ...+..++.+.++++++++++..|+++.+..|+.++++...|.++..+++|++|++
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 8888888888888888888888 88888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCC------chhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 279 YLQAAAASSPY------LYETHYNQAVI-SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 279 ~~~~al~~~p~------~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
.|..++++.|. +...+.+.|.+ +...+++..|+.+++++++++|....++..++++.-+.+
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 88888888887 44444443333 223478888888888888888888888888887765543
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.1e-21 Score=189.02 Aligned_cols=213 Identities=15% Similarity=0.040 Sum_probs=150.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777777777777766666666666666
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|++++|+..++.+....|.. ...+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..
T Consensus 682 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHPKA--ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhCcCC--hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666666666666 6666777777777777777777777777776665 5566667777777777777777
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
++++++..|++..+++.+|.++...|++++|+.+|+++++..|+++.++..++.+.
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777766666655543
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=1.8e-21 Score=177.95 Aligned_cols=206 Identities=11% Similarity=0.042 Sum_probs=184.0
Q ss_pred hhcccCCCCCchhHhhhcHHHHHHHc---------CCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q psy16611 107 ASMLSQPDGPFIQVSRLNLAKIFEGL---------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 177 (341)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (341)
.++..+|+++ .++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 286 ~Al~ldP~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~ 362 (553)
T PRK12370 286 QCVNMSPNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK 362 (553)
T ss_pred HHHhcCCccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3455677776 6778888776533 448899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC
Q psy16611 178 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSH 256 (341)
Q Consensus 178 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 256 (341)
++++++|+++.+++.+|.++...|++++|+..++++++++|.+ ...+..++.+++..|++++|+..++++++.. |++
T Consensus 363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999998 7777777777888999999999999999875 788
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
+..+..+|.++...|++++|+..+.+.....|....++..++..|...|+ +|...+++.++
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 99999999999999999999999999998889888889999999988884 67776666554
No 28
>KOG0547|consensus
Probab=99.90 E-value=7.3e-22 Score=165.67 Aligned_cols=217 Identities=16% Similarity=0.123 Sum_probs=196.7
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+..+|.++ ..++.++.+|....+.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++.++|++..
T Consensus 353 I~l~~~~~---~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPAFN---SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HhcCcccc---hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 33344444 448899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------HGLSQNN 262 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~ 262 (341)
.+..++...+++++++++...|+.+.+..|.. ++++...|.++..+++|++|++.|++++++.|. ++..+..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 99999999999999999999999999999999 999999999999999999999999999999998 5555555
Q ss_pred HHHHH-HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 263 LAVLE-AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 263 l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
.|.+. .-.+++..|+..++++++++|....++..||.+..++|+.++|+++|+++..+.-+..+..+.
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a 576 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHA 576 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55544 335899999999999999999999999999999999999999999999999887665554433
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.89 E-value=6e-21 Score=145.92 Aligned_cols=185 Identities=17% Similarity=0.107 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
..+...||.-|+..|++..|.+-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++ .++++|.|..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--GDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--cchhhhhhHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16611 233 AIGISDTRLAIQCLHLALSID--SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES 310 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 310 (341)
++.+|++++|...|++++..- +..+.++-|+|.|..+.|+++.|..+|+++++++|+++.....++...++.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999999753 566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 311 YNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 311 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
..++++.....+-..+...+..++.+.++
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~g 221 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLG 221 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence 99999999888877777777777766554
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=3.4e-20 Score=151.64 Aligned_cols=184 Identities=17% Similarity=0.141 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 231 (341)
....++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.+ ...+.++|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--GDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSID--SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 309 (341)
++...|++++|+..+++++... +.....+..+|.++...|++++|...+++++..+|++...+..++.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999854 45677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 310 SYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 310 A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
|..++++++...|++...+..+..+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999988888877766666544
No 31
>PLN02789 farnesyltranstransferase
Probab=99.87 E-value=1.3e-19 Score=152.40 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=191.0
Q ss_pred cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 202 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 202 (341)
.+-.++...+.+++|+..+.+++..+|++..+|...+.++..+| ++++++..+.+++..+|++..+|+..+.++...|+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 33456777889999999999999999999999999999999998 68999999999999999999999999999988887
Q ss_pred h--hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCH----
Q psy16611 203 Y--DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHI---- 273 (341)
Q Consensus 203 ~--~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~---- 273 (341)
. ++++.+++++++.+|++ ..+|...+.++...|+++++++++.++++.+|.+..+|+..+.+.... |.+
T Consensus 122 ~~~~~el~~~~kal~~dpkN--y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKN--YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 4 78899999999999999 999999999999999999999999999999999999999999998776 333
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
++++.+..+++.++|++..+|..++.++.. .++..+|...+.+++...|++..+...+..+..
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 578888899999999999999999999988 456678999999999999999888877776654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=2.4e-21 Score=162.89 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=114.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++..
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHH
Confidence 5566778888889999999999999998888888888788777 688899999999888887654 46667777788888
Q ss_pred cCChhHHHHHHHHHHhhc--cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLA--LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.++++++...++++.... +.+ ..+|..+|.++.+.|++++|+..|+++++.+|++..++..++.++...|+++++.
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDS--ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 899999999988877554 445 7888899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
..++......|.++..+..+|.++..+|++++|+.+|++++..+|+++.....++.+....
T Consensus 201 ~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 201 EALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence 8888888887888888889999999999999999999999999999988888887765543
No 33
>KOG1125|consensus
Probab=99.86 E-value=5.5e-20 Score=157.69 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=193.2
Q ss_pred CCCchHhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH
Q psy16611 74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM 153 (341)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 153 (341)
.+.-+.+++...+. +. ....+-+-.+++..+|.+. .+|..||.+....++-..|+..++++++++|++.
T Consensus 285 ~pdPf~eG~~lm~n-G~-------L~~A~LafEAAVkqdP~ha---eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKN-GD-------LSEAALAFEAAVKQDPQHA---EAWQKLGITQAENENEQNAISALRRCLELDPTNL 353 (579)
T ss_pred CCChHHHHHHHHhc-CC-------chHHHHHHHHHHhhChHHH---HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence 44556666666655 11 1123333467788889888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------------------------------------C--CcHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMG-----------------------------------------L--YNAELF 190 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------------------------p--~~~~~~ 190 (341)
+++..||..|...|.-..|++++.+-+... | .++++.
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 999999999999999888988888875432 3 456778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
..||.+|...|+|++|+++|+.+|...|.+ ...|+.||-++....+..+|+..|++|+++.|....++++||..++.+
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCc----------hhHHHHHHHHHHHcCCHHHHH
Q psy16611 271 GHIERASTYLQAAAASSPYL----------YETHYNQAVISNLAGDLQESY 311 (341)
Q Consensus 271 g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~ 311 (341)
|.|++|+++|-.+|.+.+.. ..+|..|-.++..+++.+-+.
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99999999999999986541 247777777787778776443
No 34
>KOG1129|consensus
Probab=99.85 E-value=9.5e-21 Score=151.69 Aligned_cols=212 Identities=18% Similarity=0.205 Sum_probs=200.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.|+.+|.+..+...|+..|.+.++..|.+...+..++.++..+++.++|.++|+.+++.+|.+.++...+|..|+.
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY 336 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY 336 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCCHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS---SHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A 276 (341)
.++.+-|+.+|++.+.+.-.+ ++.+.++|.|++..++++-++..|++++.... .-.++|+++|.+....|++.-|
T Consensus 337 ~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 999999999999999999999 99999999999999999999999999998753 3478999999999999999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
..+|+-++..++++..++.+|+.+-.+.|+.++|..++..+-...|+-.+..++++.
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 999999999999999999999999999999999999999999999987776655543
No 35
>KOG2076|consensus
Probab=99.85 E-value=7.3e-19 Score=157.70 Aligned_cols=218 Identities=18% Similarity=0.123 Sum_probs=181.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
...+..|...+..|++++|..++.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45566677777788999999999999999998888899999999999998888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------------------
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------------------------ 255 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------------ 255 (341)
+|++.+|.-+|.++++.+|.+ ....+..+.+|.+.|+...|+..|.+++...|.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 888889988899988888888 888888888888888888888877776665551
Q ss_pred --------------------------------------------------------------------------------
Q psy16611 256 -------------------------------------------------------------------------------- 255 (341)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (341)
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence
Q ss_pred -----------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-chhHHHHHHH
Q psy16611 256 -----------------------------------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPY-LYETHYNQAV 299 (341)
Q Consensus 256 -----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 299 (341)
++..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 0123344556666778999999999888776543 3569999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
||..+|.+++|+.+|++++.+.|++.+++..|+.+.+.++
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 9999999999999999999999999999999999887654
No 36
>KOG2003|consensus
Probab=99.85 E-value=1.4e-19 Score=151.13 Aligned_cols=215 Identities=20% Similarity=0.180 Sum_probs=204.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.+..+-|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66777788889999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
..+..+|++++.++..+-|.+ +.++..+|.+|-+.|+-.+|..++-...+..|-+.++.-.||..|....-+++|+.+
T Consensus 571 led~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
|+++--+.|+...-...++.|+.+.|+|++|...|+......|.+.+....+.++..
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 999999999988888889999999999999999999999999999998887776644
No 37
>KOG1173|consensus
Probab=99.84 E-value=4.7e-19 Score=151.51 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=189.9
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 128 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
++...|+..+-..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|....+|...|..+...+..++|+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHH
Confidence 55666666666666666677778888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
.+|..|-++.|.. ..-...+|.-|...++++-|.++|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-
T Consensus 367 aaY~tAarl~~G~--hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 367 AAYFTAARLMPGC--HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHhccCC--cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 9999999999998 78888899999999999999999999999999999999999999999999999999999998432
Q ss_pred C-------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16611 288 P-------YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340 (341)
Q Consensus 288 p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 340 (341)
+ .....+.+||.++.+++++++|+.+|++++.+.|.+..++..++-+...++.
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 1 2344789999999999999999999999999999999999988888877654
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=4.3e-20 Score=155.32 Aligned_cols=196 Identities=17% Similarity=0.094 Sum_probs=125.2
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCF 198 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 198 (341)
.+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++...++++++...++++.... +.++..|..+|.++.
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34444455 689999999999999988764 56777888888999999999999999987655 678899999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
..|++++|+.+|+++++.+|++ ..++..++.++...|+++++...++...+..|.++..+..+|.++..+|++++|+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999999999 99999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+|++++..+|+++.++..+|.++...|+.++|..++++++..
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999998754
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=3.2e-18 Score=162.29 Aligned_cols=206 Identities=13% Similarity=-0.009 Sum_probs=182.4
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCC
Q psy16611 128 IFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQ 202 (341)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~ 202 (341)
.+...|++++|+..|+++++..+.. ..+...+|.+|...|++++|+..|++++..+|.+ ......++.++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4467899999999999999886432 2344457999999999999999999999988766 4567778888999999
Q ss_pred hhHHHHHHHHHHhhcccc-------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNE-------------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
+++|+..++++....|.. ....++..++.++...|++++|++.+++++...|++..++..+|.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999987632 1145778999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
.|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++.+...-..
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877654443
No 40
>KOG0624|consensus
Probab=99.83 E-value=2.8e-18 Score=138.51 Aligned_cols=220 Identities=18% Similarity=0.175 Sum_probs=201.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+...|+.-+.+++++.|+...+....|.+++.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhcccc-chHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNE-NAADV------------WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 266 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~-~~~~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 266 (341)
+|++++|..-|++.+.-+|.+ ...++ +......+...|+...|+++....+++.|=++..+...+.+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 999999999999999999865 11222 22334455667999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+..+++..+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888777666665543
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=2e-18 Score=145.54 Aligned_cols=201 Identities=13% Similarity=0.018 Sum_probs=162.6
Q ss_pred cCCchHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 132 LNNMPMSVKYYKLILKRDA----TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
.+..+.++..+.+++...+ ..+..|+.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566888999999996443 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
..|+++++++|++ ..++.++|.++...|++++|++.|+++++.+|+++..... ..+....+++++|+..|.+.+...
T Consensus 119 ~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTY--NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999999999 9999999999999999999999999999999998742221 223456789999999998877554
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHHhh
Q psy16611 288 PYLYETHYNQAVISNLAGDLQESYNIVKKS-------LDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~l~~~~~~~~ 339 (341)
+.. .|. .+.++...|+..++ ..++.+ .++.|+..++++.++.+....+
T Consensus 196 ~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 196 DKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred Ccc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 322 232 35566666766443 233333 3566777789999988877554
No 42
>KOG2002|consensus
Probab=99.83 E-value=1.2e-18 Score=157.45 Aligned_cols=222 Identities=20% Similarity=0.156 Sum_probs=140.1
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 189 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 189 (341)
..|++. ...+.-|.+.+..++|..|+.+|+.++..+|.. ++....+|.|+.++|+.+.|+..|.++++++|.+..+
T Consensus 159 ~sp~Ni---l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 159 QSPDNI---LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred hCCcch---HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 445555 566667777777777777777777777777653 4556677777777777777777777777777776666
Q ss_pred HHHHHHHHHHcC---ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q psy16611 190 FNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS---HGLSQNNL 263 (341)
Q Consensus 190 ~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 263 (341)
+..||.+-.... .+..++..+.++...++.+ +.++..++.-++..|+|..+..+...++..... .++.++.+
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n--P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN--PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 666665544433 3455666666666666666 666666666666666666666666666554422 23345666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
|.+|..+|+|++|..+|.+++..++++ .-.++.+|..|...|+++.|+.+|++++...|++.+....++.+...
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 666666666666666666666666555 44555666666666666666666666666666666666555555544
No 43
>PLN02789 farnesyltranstransferase
Probab=99.83 E-value=5.5e-18 Score=142.58 Aligned_cols=248 Identities=8% Similarity=-0.001 Sum_probs=209.5
Q ss_pred CchHhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcC-CchHHHHHHHHHHHhCCCCHH
Q psy16611 76 GTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLN-NMPMSVKYYKLILKRDATCME 154 (341)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~~~~~ 154 (341)
..+.++..-+|......... .+.+.+-..++..+|++. .+|...+.++...| ++++++..+.+++..+|++..
T Consensus 34 ~~~~~a~~~~ra~l~~~e~s---erAL~lt~~aI~lnP~~y---taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERS---PRALDLTADVIRLNPGNY---TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCchhH---HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence 34666666666644333332 356666667788889888 88999999999998 689999999999999999999
Q ss_pred HHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 155 AIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 155 ~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
+|+..+.++...|+. ++++.++.++++.+|++..+|...+.++...|+++++++++.++++.+|.+ ..+|+..+.+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--~sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--NSAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--hhHHHHHHHH
Confidence 999999999988874 788999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhc---CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 233 AIGI---SDT----RLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 233 ~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
+... |.+ ++++.+..+++..+|++..+|+.++.++.. .++..+|+..+.+++...|.+..++..|+.+|
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 8776 333 578889999999999999999999999988 45677899999999999999999999999999
Q ss_pred HHcC------------------CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 302 NLAG------------------DLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 302 ~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
.... ..++|...++..-..+|-....|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 266 CEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred HhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 8642 34678888888766677666666543
No 44
>KOG2002|consensus
Probab=99.82 E-value=4.1e-18 Score=154.02 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=200.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALC 196 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~ 196 (341)
..++..|.++.+.|+.+.|+..|.++++++|.+..++..||.+-....+ +..+...+.++...++.+|.++..|+..
T Consensus 200 D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 200 DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH 279 (1018)
T ss_pred CccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 3467788999999999999999999999999999999999988776554 6789999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCHH
Q psy16611 197 CFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHIE 274 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~ 274 (341)
++..|+|..+..+..-++...... ...+.++.+|.+|..+|+|++|..+|.++++.++++ .-.++.+|.+|+..|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 999999999999999999876443 446789999999999999999999999999999998 778899999999999999
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 275 RASTYLQAAAASSPYLYETHYNQAVISNLAG----DLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
.|+.+|++.+...|++..+...||.+|...+ ..++|..+..+++...|.+.++|..++++...
T Consensus 360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999998886 67899999999999999999999999988653
No 45
>KOG0624|consensus
Probab=99.82 E-value=1.2e-17 Score=134.83 Aligned_cols=219 Identities=13% Similarity=0.140 Sum_probs=185.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH---HHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM---EAIA------------CIGVNHFYNDQPEVALLFYRRLLQMGL 184 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p 184 (341)
.+++..|.+++++|++++|...|+.+++.+|++. ++.. .....++..|+...++.+....++..|
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 6777788888888888888888888888888532 2221 223344556888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH---
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN--- 261 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--- 261 (341)
.+...+...+.||...|+...|+.-++.+-++..++ .+.++.++.+++..|+.+.++...+++++++|++-..+-
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYK 264 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHH
Confidence 888889999999999999999999999999999999 999999999999999999999999999999998632211
Q ss_pred -----------------------------------------------HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16611 262 -----------------------------------------------NLAVLEAREGHIERASTYLQAAAASSPYLYETH 294 (341)
Q Consensus 262 -----------------------------------------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 294 (341)
.+..++..-|++.+|+..+.+++.++|++..++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 123345555889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 340 (341)
...+.+|.-...|+.|+..|+++.+.+++|..+...+.+.++...+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ 390 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888876543
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.4e-17 Score=157.95 Aligned_cols=144 Identities=10% Similarity=-0.048 Sum_probs=81.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------C
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS---------------H 256 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~ 256 (341)
|.+|...|++++|+.+|++++..+|.. ........++.++...|++++|+..++++....|. .
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 334444444444444444444333322 00123333444445555555555555555544431 1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
..++..++.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++.++|++...+..++.+..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 23445566666666777777777777777777777777777777777777777777777777777777666666655544
Q ss_pred H
Q psy16611 337 Y 337 (341)
Q Consensus 337 ~ 337 (341)
.
T Consensus 439 ~ 439 (765)
T PRK10049 439 D 439 (765)
T ss_pred H
Confidence 3
No 47
>KOG2076|consensus
Probab=99.82 E-value=3.4e-18 Score=153.49 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=186.9
Q ss_pred hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q psy16611 107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 186 (341)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 186 (341)
..+..+|.++ .+|..||.+|.+.|+.+++...+-.+-.++|++.+.|..++....++|+++.|.-+|.++++.+|.+
T Consensus 164 EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 164 EVIKQDPRNP---IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHhCccch---hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 3445566666 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhh--------------------------------------------------
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSL-------------------------------------------------- 216 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------- 216 (341)
....+..+.+|.+.|+...|...|.+++..
T Consensus 241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~n 320 (895)
T KOG2076|consen 241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLN 320 (895)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHH
Confidence 999999999999999999999988888776
Q ss_pred --------------------------------------------------------------------------------
Q psy16611 217 -------------------------------------------------------------------------------- 216 (341)
Q Consensus 217 -------------------------------------------------------------------------------- 216 (341)
T Consensus 321 i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 321 ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH
Confidence
Q ss_pred ------c-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 217 ------A-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 217 ------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
+ +.....+.++.++.++...|++.+|+.+|..+....+. +..+|+.+|.+|..+|.+++|+++|++++...|
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 1 00123667889999999999999999999999887653 467999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
++.++...|+.++.++|+.++|.+.++....-+
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999998877333
No 48
>KOG1840|consensus
Probab=99.82 E-value=6e-18 Score=148.50 Aligned_cols=225 Identities=17% Similarity=0.124 Sum_probs=183.8
Q ss_pred CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q psy16611 113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-- 182 (341)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 182 (341)
-.+|........++..|..+|+|++|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345555566667999999999999999999999988 3433444556999999999999999999999975
Q ss_pred ------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc------chHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 183 ------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 183 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
+|..+.++.+||..|...|++++|..++++++++.... .....+.+++.++...+++++|+.++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45556789999999999999999999999999884331 236678899999999999999999999998
Q ss_pred hcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCchhHHHHHHHHHHHcCCHHHHHHHH
Q psy16611 251 SID--------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS--------PYLYETHYNQAVISNLAGDLQESYNIV 314 (341)
Q Consensus 251 ~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 314 (341)
++. +.-+..+.++|.+|..+|+|++|.++|++++.+. +.....+.++|..|.+.+++.+|...|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 763 2336789999999999999999999999999875 222347788999999999999999999
Q ss_pred HHHHhc----CCCCHHH---HHHHHHHHHH
Q psy16611 315 KKSLDL----HPGHSYS---WDILRKLEQY 337 (341)
Q Consensus 315 ~~al~~----~p~~~~~---~~~l~~~~~~ 337 (341)
.++..+ .|+++.. +.+|+.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 998865 4555444 4444444443
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.81 E-value=1.1e-17 Score=137.05 Aligned_cols=192 Identities=10% Similarity=-0.002 Sum_probs=149.4
Q ss_pred CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH-
Q psy16611 113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE- 188 (341)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~- 188 (341)
|.+......++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45555557888888888899999999999999988888765 57788899999999999999999999988887665
Q ss_pred --HHHHHHHHHHHc--------CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 189 --LFNNLALCCFYS--------QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL 258 (341)
Q Consensus 189 --~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 258 (341)
+++.+|.++... |++++|+..|++++..+|++ ...+..+..+... ... ...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~~----~~~-------------~~~ 167 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDYL----RNR-------------LAG 167 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHHH----HHH-------------HHH
Confidence 688888888876 77888888888888888887 4443222221111 000 012
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
....+|.++...|++.+|+..|++++...|+. ..+++.+|.++...|++++|..+++......|+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 23577888999999999999999999987764 468999999999999999999988887766653
No 50
>KOG1174|consensus
Probab=99.81 E-value=6.7e-18 Score=139.42 Aligned_cols=215 Identities=15% Similarity=0.128 Sum_probs=196.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|+--+...+...++..|+.+-+++|..+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.|..|-.+|..
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 44555667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNIS-HVAI-GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.|++.+|...-+.+++..|.+ +..+..+| .++. .-.--++|.+++++++++.|....+...++..+...|++++++
T Consensus 381 ~~~~kEA~~~An~~~~~~~~s--A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNS--ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcc--hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999999999999999999999 88888886 4443 4445689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
..+++.+...|+. ..+..||.++...+.+++|..+|..++.++|++..+...+.++.+.
T Consensus 459 ~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 459 KLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999988864 5788999999999999999999999999999999999999888764
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=3.6e-17 Score=144.51 Aligned_cols=217 Identities=8% Similarity=-0.038 Sum_probs=162.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..++..|.++.+.|+++.|..++.++.+..|++. .+....+.++...|+++.|+..+++.++..|+++.++..++.++.
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556667777777888888888888777777664 455556777777888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhh--------------------------------------cccc--chHHHHHHHHHHHHhcCC
Q psy16611 199 YSQQYDMVVTCFERALSL--------------------------------------ALNE--NAADVWYNISHVAIGISD 238 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~--------------------------------------~~~~--~~~~~~~~la~~~~~~g~ 238 (341)
..|++++|.+.+.+..+. .|.. ..+.++..++..+...|+
T Consensus 199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~ 278 (409)
T TIGR00540 199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD 278 (409)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 888877777766666533 2210 125667778888889999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHcCCHHHHHHHH
Q psy16611 239 TRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASSPYLY--ETHYNQAVISNLAGDLQESYNIV 314 (341)
Q Consensus 239 ~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~ 314 (341)
+++|++.++++++..|++.... ..........++.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++|
T Consensus 279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999988887532 2223333445788889999999999999999 78889999999999999999999
Q ss_pred H--HHHhcCCCCHHHHHHHHHHHHH
Q psy16611 315 K--KSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 315 ~--~al~~~p~~~~~~~~l~~~~~~ 337 (341)
+ ++++..|++.... .++.+...
T Consensus 359 e~a~a~~~~p~~~~~~-~La~ll~~ 382 (409)
T TIGR00540 359 KNVAACKEQLDANDLA-MAADAFDQ 382 (409)
T ss_pred HHhHHhhcCCCHHHHH-HHHHHHHH
Confidence 9 5777888876644 55655543
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=2.8e-18 Score=128.43 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=96.6
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
..+|+++++++|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.+
T Consensus 13 ~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34577777776553 4456777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16611 287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340 (341)
Q Consensus 287 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 340 (341)
+|+++.+++++|.++...|++++|+..|++++.+.|+++..+..++.+...++.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776666543
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.80 E-value=1.1e-17 Score=137.06 Aligned_cols=162 Identities=10% Similarity=0.052 Sum_probs=132.4
Q ss_pred hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhc--------CChHHHHHHH
Q psy16611 108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCME---AIACIGVNHFYN--------DQPEVALLFY 176 (341)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~--------~~~~~A~~~~ 176 (341)
.+...|+++....+++.+|.++...|++++|+..|+++++.+|++.. +++.+|.++... |++++|++.|
T Consensus 59 ~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 59 LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 34568888877778999999999999999999999999999998765 689999999876 7899999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16611 177 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256 (341)
Q Consensus 177 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 256 (341)
++++..+|++...+..+..+....+ .. ......+|.+++..|++.+|+..|+++++..|+.
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~-----------------~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRN-----------------RL--AGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHH-----------------HH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 9999999998766543332211100 11 2334578888999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 257 ---GLSQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 257 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
+.+++.+|.++...|++++|..+++......|
T Consensus 200 ~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 200 PATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999998888776555
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.2e-17 Score=130.20 Aligned_cols=204 Identities=16% Similarity=0.221 Sum_probs=118.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 194 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 194 (341)
...+.||.+|.+.|+.+.|+.+-+..++. |+ ...+...||.-|+..|-++.|+..|........--..+...|.
T Consensus 70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl 148 (389)
T COG2956 70 EAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 45555555555555555555555544432 22 1234455555555555555565555555544444445555666
Q ss_pred HHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
.+|....+|++|++.-++..++.+.. ..+..+..++..+....+++.|+..+.++++.+|.+..+-..+|.++...|
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g 228 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKG 228 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence 66666666666666666666655554 234455556666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 272 HIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+|+.|++.++.+++.+|+.. .+...|..||.++|+.++...++.++.+..+..
T Consensus 229 ~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 229 DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 66666666666666665543 355556666666666666666666666655543
No 55
>KOG0548|consensus
Probab=99.80 E-value=2e-17 Score=140.96 Aligned_cols=217 Identities=12% Similarity=0.112 Sum_probs=189.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-------HHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-------ELFNN 192 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~ 192 (341)
...-.+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++..-... .....
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999 8888899999999999999999888888877654322 23445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcccc------------------------chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16611 193 LALCCFYSQQYDMVVTCFERALSLALNE------------------------NAADVWYNISHVAIGISDTRLAIQCLHL 248 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (341)
+|..|...++++.++.+|.+++.-.... ....--..-|..++..|+|..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6778888899999999999988753221 0023345568999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 249 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
+++.+|+++..|.+.+.+|.++|.+..|+...+.+++++|++...|...|.++..+.+|++|.+.|.++++++|++.++.
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy16611 329 DILRKLEQY 337 (341)
Q Consensus 329 ~~l~~~~~~ 337 (341)
..+.++.+.
T Consensus 464 ~~~~rc~~a 472 (539)
T KOG0548|consen 464 DGYRRCVEA 472 (539)
T ss_pred HHHHHHHHH
Confidence 888887664
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=1.9e-16 Score=139.26 Aligned_cols=212 Identities=10% Similarity=-0.013 Sum_probs=166.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA-IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..++..+....+.|+++.|..+|.++.+.+|++... ....+.++...|+++.|+..+++..+..|+++.++..++.+|.
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555667689999999999999999988887543 3445889999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhc------------------------------------------cccchHHHHHHHHHHHHhc
Q psy16611 199 YSQQYDMVVTCFERALSLA------------------------------------------LNENAADVWYNISHVAIGI 236 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~------------------------------------------~~~~~~~~~~~la~~~~~~ 236 (341)
..|++++|++.+.+..+.. |++ +.++..++..+...
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~--~~~~~~~A~~l~~~ 276 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ--VALQVAMAEHLIEC 276 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC--HHHHHHHHHHHHHC
Confidence 9999999987666655331 222 55667778888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 237 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 237 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
|+.++|.+.++++++. +.++.....++.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|..+|++
T Consensus 277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999984 4455444434433 448889999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH
Q psy16611 317 SLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 317 al~~~p~~~~~~~~l~~~~~~ 337 (341)
+++..|++.. +..++.+...
T Consensus 354 al~~~P~~~~-~~~La~~~~~ 373 (398)
T PRK10747 354 ALKQRPDAYD-YAWLADALDR 373 (398)
T ss_pred HHhcCCCHHH-HHHHHHHHHH
Confidence 9999988755 2345555443
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.78 E-value=9.4e-18 Score=125.59 Aligned_cols=122 Identities=15% Similarity=0.024 Sum_probs=61.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16611 175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 175 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 254 (341)
+|+++++.+|++ ++.+|.++...|++++|+.+|++++..+|.+ ..+|..+|.++...|++++|+..|+++++++|
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444444443 3334455555555555555555555555555 55555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
+++.+++++|.++...|++++|+..|++++.+.|+++..+.+++.+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55555555555555555555555555555555555555444444443
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.2e-16 Score=125.74 Aligned_cols=212 Identities=14% Similarity=0.092 Sum_probs=188.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHc
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFYS 200 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~ 200 (341)
|.-+.-.++.++|+..|..+++.+|...++...||..|...|+.+.|+..-+..+. .|+. ..+...||.-|+..
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHh
Confidence 56667788999999999999999999999999999999999999999999766654 4443 34788999999999
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhCCHHH
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-----GLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~ 275 (341)
|-++.|...|....+...-- ..+...+..+|....+|++|++..++..++.++. +..++.++..+....+.+.
T Consensus 121 Gl~DRAE~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhHHHHHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999998765444 7889999999999999999999999999988765 5688999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhc
Q psy16611 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH-SYSWDILRKLEQYFSY 340 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~ 340 (341)
|+..++++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +++...+..++.++++
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988 5666777777666553
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.78 E-value=8.2e-17 Score=126.93 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH-HhcCC--HHHH
Q psy16611 166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA-IGISD--TRLA 242 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~-~~~g~--~~~A 242 (341)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++++.|++ ..++..+|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444444444555555555555555555555555555555555555555555444 44444444432 33343 2444
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
...++++++.+|++..+++.+|..+...|++++|+.+|+++++..|.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455554444444444444444444444444444444444444443
No 60
>KOG4162|consensus
Probab=99.77 E-value=1.3e-16 Score=141.22 Aligned_cols=215 Identities=19% Similarity=0.140 Sum_probs=180.0
Q ss_pred hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q psy16611 107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR-DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 185 (341)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 185 (341)
.+++.+|.|| ...+.++..|..+++.+.|..+.+++++. ..+++.+|..++.++...+++.+|+...+.++.-.|+
T Consensus 469 ~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 469 EAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 3556688999 77889999999999999999999999999 5568899999999999999999999998888776555
Q ss_pred cHHH----------------------------------------------------------------------------
Q psy16611 186 NAEL---------------------------------------------------------------------------- 189 (341)
Q Consensus 186 ~~~~---------------------------------------------------------------------------- 189 (341)
|...
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 2111
Q ss_pred ---------------------------HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH
Q psy16611 190 ---------------------------FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242 (341)
Q Consensus 190 ---------------------------~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 242 (341)
|...+..+...++.++|..++.++-.+.|.. +..|+..|.++...|++.+|
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHHHHHhhHHH
Confidence 4456667777777788888888888888877 88888888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST--YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++++|.+.++|+.+|.++.+.|+.++|.++|..++++
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 888888888888888888888888888888777777 888888888888888888888888888888888888888888
Q ss_pred CCCCHH
Q psy16611 321 HPGHSY 326 (341)
Q Consensus 321 ~p~~~~ 326 (341)
.+.+|.
T Consensus 784 e~S~PV 789 (799)
T KOG4162|consen 784 EESNPV 789 (799)
T ss_pred ccCCCc
Confidence 877754
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=2.3e-16 Score=137.62 Aligned_cols=202 Identities=10% Similarity=0.020 Sum_probs=171.2
Q ss_pred hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16611 118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA 194 (341)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 194 (341)
...++..+|..+...|+.+++...+.++....+.+ .+..+..+.++...|++++|...+++++..+|.+..++.. +
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 34889999999999999999999999988877644 5667788999999999999999999999999999987775 5
Q ss_pred HHHHHcCChh----HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 195 LCCFYSQQYD----MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 195 ~~~~~~~~~~----~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
..+...|++. .+...+.......|.. ...+..+|.++...|++++|+..++++++.+|++..++..+|.++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 5555555444 4444444433455555 778889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 271 GHIERASTYLQAAAASSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 271 g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
|++++|+.++++++...|.+.. .+..++.++...|++++|+..|++++...|
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999998774432 466899999999999999999999987766
No 62
>KOG1840|consensus
Probab=99.77 E-value=1.2e-16 Score=140.45 Aligned_cols=207 Identities=18% Similarity=0.184 Sum_probs=174.0
Q ss_pred CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--
Q psy16611 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRD--------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-- 183 (341)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 183 (341)
.++.+......+|.+|...+++.+|+.+|++++.+. |.-+.++.+||..|...|++++|..++++++++.
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 455554445569999999999999999999999753 3345678899999999999999999999998763
Q ss_pred ------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc-----cc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 184 ------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NE-NAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 184 ------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
|.-...+.+++.++...+++++|..++++++++.- .+ .....+.++|.+|..+|++++|.++|++++.
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33455688899999999999999999999998742 22 3477899999999999999999999999998
Q ss_pred cC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 252 ID--------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-------PYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 252 ~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
+. +.....+.++|..|.+.+++.+|...|.+++.+. |+....+.+|+.+|..+|++++|+++.++
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 64 2335678899999999999999999999998753 34445889999999999999999999999
Q ss_pred HHhc
Q psy16611 317 SLDL 320 (341)
Q Consensus 317 al~~ 320 (341)
++..
T Consensus 476 ~~~~ 479 (508)
T KOG1840|consen 476 VLNA 479 (508)
T ss_pred HHHH
Confidence 9843
No 63
>KOG2003|consensus
Probab=99.76 E-value=9.6e-17 Score=134.39 Aligned_cols=213 Identities=21% Similarity=0.134 Sum_probs=189.9
Q ss_pred hhcHHHHHHH--cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 122 RLNLAKIFEG--LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 122 ~~~l~~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
-.+|..+++. -.++..|..+...++..+.-++.++.+.|.+-+..|++++|.+.|++++..+....++++++|..+..
T Consensus 457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred hhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 3344444444 34677788888888888888888899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
+|+.++|+++|-+.-.+--++ ..+++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+..+|.++
T Consensus 537 ~~~ldeald~f~klh~il~nn--~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNN--AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 999999999999988887778 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
+-......|.+.++.-.|+..|....-.++|+.+|+++--+.|+.......++.|-+
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776666666544
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.76 E-value=3.3e-16 Score=122.73 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=167.9
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16611 135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 214 (341)
Q Consensus 135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 214 (341)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|+|.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666777789999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16611 215 SLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294 (341)
Q Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 294 (341)
.+.|++ .++|..+|.+|.+.|++++|...|.+++++.|.++.+..|+|..+.-.|+++.|..++..+....+.+..+.
T Consensus 128 ~l~p~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 128 RLAPTD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred ccCCCC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
.+++.+...+|++++|.+...+-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999987765543
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=7.9e-16 Score=144.22 Aligned_cols=201 Identities=10% Similarity=0.006 Sum_probs=176.6
Q ss_pred CCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16611 112 QPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN 191 (341)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 191 (341)
.|..+ ...+..+.+..++|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.......
T Consensus 30 ~p~~~---~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMA---DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred Cccch---hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 45555 678888999999999999999999999999998655558888999999999999999999944455556666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
.+|.++...|++++|++.|+++++.+|++ +.++..++.++...++.++|++.++++...+|.+... ..++.++...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 66889999999999999999999999999 9999999999999999999999999999999985554 55666666678
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
+..+|+..|+++++.+|++..++..+..++...|-...|.+..++--
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 88789999999999999999999999999999999998887776533
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=9.3e-16 Score=135.59 Aligned_cols=196 Identities=13% Similarity=0.017 Sum_probs=168.4
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM------------------- 182 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------- 182 (341)
....+.++...|+++.|...++.+++..|+++.++..++.++...|++++|++.+.+..+.
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4445788999999999999999999999999999999999999999999888887776543
Q ss_pred -------------------CC----CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHH--HHHHHHHHHhcC
Q psy16611 183 -------------------GL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV--WYNISHVAIGIS 237 (341)
Q Consensus 183 -------------------~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~la~~~~~~g 237 (341)
.| +++..+..++..+...|++++|.+.++++++..|++ ... ...........+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~--~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD--RAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc--ccchhHHHHHhhhcCCC
Confidence 22 355667888899999999999999999999999998 432 123333344568
Q ss_pred CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Q psy16611 238 DTRLAIQCLHLALSIDSSHG--LSQNNLAVLEAREGHIERASTYLQ--AAAASSPYLYETHYNQAVISNLAGDLQESYNI 313 (341)
Q Consensus 238 ~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (341)
+.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++.. +..+|.++.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999999 889999999999999999999999 67888887665 55999999999999999999
Q ss_pred HHHHHhc
Q psy16611 314 VKKSLDL 320 (341)
Q Consensus 314 ~~~al~~ 320 (341)
|++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998754
No 67
>KOG3060|consensus
Probab=99.75 E-value=2.9e-15 Score=116.45 Aligned_cols=204 Identities=13% Similarity=0.037 Sum_probs=152.1
Q ss_pred CCchHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16611 133 NNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 206 (341)
Q Consensus 133 g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 206 (341)
.+.++-+++....+... ++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 34455555555554432 222333445555666778888888888887777788888888888888888888888
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
+++|+..++-+|.+ ..++.....+...+|+.-+|++.+.+.++.++.+.++|..++.+|...|+|++|..+|++.+-+
T Consensus 106 ~e~y~~lL~ddpt~--~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPTD--TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcch--hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888888887 7777777777777788888888888888888888888888888888888888888888888888
Q ss_pred CCCchhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 287 SPYLYETHYNQAVISNLAG---DLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 287 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
.|.++..+..+|.+++-+| +++-|.++|.++++++|.+..+++.+-.+..++
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 8888888888888877765 556778888888888887777777666655544
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=9.4e-16 Score=134.89 Aligned_cols=192 Identities=13% Similarity=0.031 Sum_probs=167.5
Q ss_pred cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------------------- 182 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------- 182 (341)
..+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999666655432
Q ss_pred ---------------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH
Q psy16611 183 ---------------------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241 (341)
Q Consensus 183 ---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 241 (341)
.|+++.+...++..+...|+.++|...++++++..+ + ......++.+ ..++.++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~--~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-D--ERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C--HHHHHHHhhc--cCCChHH
Confidence 234566677889999999999999999999999544 4 5444444443 4499999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
+++.+++.++..|+++..+..+|.++...+++++|..+|+++++..|++. .+..++.++.++|+.++|..+|++++.+.
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999864 46689999999999999999999998764
No 69
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.74 E-value=5.3e-16 Score=122.32 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=121.4
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCC--HHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE-AREGH--IERA 276 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A 276 (341)
.++.++++..++++++.+|++ ...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~--~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN--SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 677899999999999999999 999999999999999999999999999999999999999999975 67787 5999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
...++++++.+|++..+++.+|.++...|++++|+.+|++++++.|.+..-...+..+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN 188 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765444444443
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.74 E-value=2.5e-16 Score=117.46 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=116.1
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
+.+++++..+|++ ....+.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+
T Consensus 4 ~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQ--LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhh--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888 88888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16611 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340 (341)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 340 (341)
|++...++.+|.++...|++++|+..|+++++++|++.........+...++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 134 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLES 134 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998888777777776654
No 71
>KOG0550|consensus
Probab=99.73 E-value=8.5e-17 Score=132.95 Aligned_cols=215 Identities=19% Similarity=0.185 Sum_probs=175.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHH-----H-------h------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLIL-----K-------R------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l-----~-------~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 181 (341)
..+...+.++...++..+|...++..- . . .|....+....+.|+...|++++|...--..++
T Consensus 118 k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 118 KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 445555666666666666665554211 0 0 011223344667788888999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 182 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
+++.+.++++..|.+++..++.+.|+.+|++++.++|+. .....|..-|+-.++.|++.+|.++|.++|.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 999999999999999999999999999999999999887 1234567788889999999999999999999
Q ss_pred cCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 252 IDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327 (341)
Q Consensus 252 ~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 327 (341)
++|++ +..|.+.+.+..++|+..+|+...+.++.+++....++...|.|+..++++++|++.|+++++...+ .+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~ 356 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEI 356 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cch
Confidence 99986 5678999999999999999999999999999999999999999999999999999999999998877 444
Q ss_pred HHHHHHHH
Q psy16611 328 WDILRKLE 335 (341)
Q Consensus 328 ~~~l~~~~ 335 (341)
...+.+..
T Consensus 357 r~~l~~A~ 364 (486)
T KOG0550|consen 357 RRTLREAQ 364 (486)
T ss_pred HHHHHHHH
Confidence 44444433
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.73 E-value=4.8e-15 Score=136.58 Aligned_cols=147 Identities=11% Similarity=-0.034 Sum_probs=101.0
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 176 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
........|.+.+++.+||.+....|.+++|..+++.++++.|++ ..++.+++.++.+.+++++|+..+++++..+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 333344566666777777777777777777777777777777776 677777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
++..++.+|.++.+.|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++...+-
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 777777777777777777777777777776666666677777777777777777777777776665443
No 73
>KOG0548|consensus
Probab=99.72 E-value=2.9e-15 Score=128.02 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=112.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH-----------------------------------
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI----------------------------------- 234 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~----------------------------------- 234 (341)
...+|...+...++..|+++|.++++++ .+ ...+.+.+.+|+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~--it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TD--ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hh--hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566777777778888888888888876 44 343433333333
Q ss_pred ------hcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16611 235 ------GISDTRLAIQCLHLALSID--------------------------SSHGLSQNNLAVLEAREGHIERASTYLQA 282 (341)
Q Consensus 235 ------~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (341)
..++++.|+.+|++++... |.-..--...|..++..|+|..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3456666777777766432 11222334568888999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 283 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
++..+|++...+.+.+.||.++|.+..|+...+++++++|++..++...+.+...++
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888777766544
No 74
>KOG0495|consensus
Probab=99.72 E-value=3.4e-15 Score=130.18 Aligned_cols=216 Identities=16% Similarity=0.135 Sum_probs=186.5
Q ss_pred hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16611 108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA 187 (341)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 187 (341)
++...|..+ ..|+-.+..+...|+...|..++.++++.+|++.++|+....+.+...+++.|..+|.++....| ..
T Consensus 576 av~~~pkae---~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-Te 651 (913)
T KOG0495|consen 576 AVEQCPKAE---ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TE 651 (913)
T ss_pred HHHhCCcch---hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cc
Confidence 444556555 56777777888888888888888888888888888888888888888888888888888887655 56
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
.+|+.-+.+...+++.++|+.+++++++..|.. ...|..+|+++.++++.+.|.+.|...++..|.....|..++.+-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f--~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDF--HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch--HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 778888888888899999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD 329 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 329 (341)
.+.|..-.|...++++.-.+|++...|......-.+.|+.+.|.....++++-.|++...|.
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 89999999999999999999999999988888899999999999999999999998877664
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=2.4e-15 Score=141.05 Aligned_cols=192 Identities=8% Similarity=-0.001 Sum_probs=166.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc
Q psy16611 142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 221 (341)
Q Consensus 142 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 221 (341)
+--..-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.....+..++...|+.++|+.++++++.-.+..
T Consensus 23 ~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~- 101 (822)
T PRK14574 23 FISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS- 101 (822)
T ss_pred HHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-
Confidence 3334456788999999999999999999999999999999999996444488889999999999999999999444444
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
......+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++
T Consensus 102 -~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 102 -SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 66666678899999999999999999999999999999999999999999999999999999999986554 5667777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 302 NLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
...++..+|+..++++++.+|++.++...+.....
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67888878999999999999999998766655543
No 76
>KOG0550|consensus
Probab=99.71 E-value=2.7e-16 Score=130.06 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=133.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH------------
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------------ 257 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------ 257 (341)
...-+.|+...|++++|...--..+++++.+ .++++..|.+++..++.+.|+.+|+++++++|++.
T Consensus 172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 172 KLLKAECLAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence 3445677888889999999888999999999 99999999999999999999999999999999874
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
..+..-|.-.++.|+|.+|.+.|.++|.++|++.. .|.+.+.+...+|+..+|+...+.++.++|....++...+.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 35667788899999999999999999999998764 68889999999999999999999999999999999988888
Q ss_pred HHHHhhc
Q psy16611 334 LEQYFSY 340 (341)
Q Consensus 334 ~~~~~~~ 340 (341)
+...++.
T Consensus 330 c~l~le~ 336 (486)
T KOG0550|consen 330 CHLALEK 336 (486)
T ss_pred HHHHHHH
Confidence 8877653
No 77
>KOG0495|consensus
Probab=99.70 E-value=1.6e-14 Score=126.11 Aligned_cols=216 Identities=15% Similarity=0.070 Sum_probs=160.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|++-+..+...+-++-|+..|..+++.+|.....|...+..-...|..++-..++++++...|.....|...+..+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 56777778888888888888888888888888888888877777777888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|+...|..++.++++.+|++ .++|+....+.....+++.|..+|.++....|. ..+|..-+.+...+++.++|+..
T Consensus 597 agdv~~ar~il~~af~~~pns--eeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNS--EEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCc--HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence 888888888888888888877 777777666666666777777777766665443 45666666666666667777777
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
++++++..|+....|..+|.++.++++.+.|...|...+..-|+....|..++++...-
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 77777766666666667777777777777777777666666676666666666665543
No 78
>KOG0553|consensus
Probab=99.70 E-value=5.5e-16 Score=123.73 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
++-+..-|.-+++.++|.+|+..|.+||+++|.++..|++.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44455566666677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
.+|++++|+..|+++++++|++...+..|......+.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 7777777777777777777777777766666665543
No 79
>KOG4162|consensus
Probab=99.70 E-value=1.1e-14 Score=129.36 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=185.9
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16611 135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERA 213 (341)
Q Consensus 135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 213 (341)
..+++..++++++.+|+|+.+.+.++.-|..+++.+.|+.+.+++++. ..+++.+|..++.++..++++.+|+.+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999 5678899999999999999999999888777
Q ss_pred Hhhccc--------------------------------------------------------------------------
Q psy16611 214 LSLALN-------------------------------------------------------------------------- 219 (341)
Q Consensus 214 l~~~~~-------------------------------------------------------------------------- 219 (341)
+.-.++
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 654111
Q ss_pred ------------------------c---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16611 220 ------------------------E---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272 (341)
Q Consensus 220 ------------------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 272 (341)
. .....|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 1 1134566778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16611 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN--IVKKSLDLHPGHSYSWDILRKLEQYFSY 340 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~ 340 (341)
+++|.+.|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.+.++|+.++.+-+..+.
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999888888 9999999999999999999999877653
No 80
>KOG1174|consensus
Probab=99.68 E-value=1.4e-14 Score=120.02 Aligned_cols=221 Identities=10% Similarity=0.010 Sum_probs=152.4
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+...|.+++.+.-...++.++.....+.-+..++-.-....|++...+..+|.+++..|++++|+..|+++..++|....
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 34456677665555555666665666666667777777888999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (341)
..-..|.++...|+++.-.......+...... ..-|+.-+..++..+++..|+.+-++++..+|.+..++...|..+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t--a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT--ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc--hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 76666666666666666666666666665555 5566666666666666666666666666666666666666666666
Q ss_pred HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
..|+.++|+-.|+.+..+.|...+.|..|..+|...|++.||...-..++...|++..+...+
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 666666666666666666666666666666666666666555555555555555544444333
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.68 E-value=6.9e-15 Score=135.52 Aligned_cols=154 Identities=14% Similarity=-0.046 Sum_probs=139.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16611 138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 217 (341)
Q Consensus 138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 217 (341)
++.-+.......|.+.+++.+||.+....|.+++|+..++.++++.|++..++..++.++.+.+++++|+..+++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33334444556788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16611 218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 293 (341)
Q Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 293 (341)
|++ ...++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus 151 p~~--~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 151 SSS--AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred CCC--HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999999887655444
No 82
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.68 E-value=8.5e-15 Score=136.02 Aligned_cols=203 Identities=12% Similarity=0.043 Sum_probs=171.7
Q ss_pred CCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--------
Q psy16611 115 GPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------- 186 (341)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------- 186 (341)
+|....++..+...+...+++++++..++.+++.+|+....++.+|.++.+.++++++.-. .++...+.+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3334488999999999999999999999999999999999999999999999887776655 555544444
Q ss_pred -----------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 187 -----------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 187 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
..+++.+|.||-..|++++|...|+++++.+|++ +.+++++|..|... +.++|+.++.+++..
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3889999999999999999999999999999999 99999999999998 999999999999865
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH--------HHH------------HHHHHcCCHHHHHHHHH
Q psy16611 256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY--------NQA------------VISNLAGDLQESYNIVK 315 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~l~------------~~~~~~g~~~~A~~~~~ 315 (341)
+...++|.++..++.+.+..+|++.+.+. .++ .+|...+++++++..++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 66667888888888888888887765321 223 66777888999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHH
Q psy16611 316 KSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 316 ~al~~~p~~~~~~~~l~~~~~ 336 (341)
.+++++|+|..++..+..+.+
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999888888877765
No 83
>KOG3060|consensus
Probab=99.68 E-value=4.5e-14 Score=109.89 Aligned_cols=182 Identities=13% Similarity=0.081 Sum_probs=165.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+-.+..+....|+.+-|..++++.-...|....+....|..+...|++++|+++|+..++.+|.+...+...--+...
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 44445567778899999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERA 276 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A 276 (341)
+|+--+|++.+..-++..+.+ .++|..++.+|...|+|++|.-+|++++-+.|.++..+..+|.+++-+| +++-|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999988776 56779
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
.++|.++++++|.+..+++.+-.+...
T Consensus 211 rkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 999999999999888888776555433
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.67 E-value=1.2e-14 Score=114.02 Aligned_cols=169 Identities=19% Similarity=0.128 Sum_probs=159.0
Q ss_pred ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16611 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 189 (341)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 189 (341)
...|++. .. .+++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++....|+++..
T Consensus 61 ~~~p~d~---~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 61 LRNPEDL---SI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred hcCcchH---HH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 3567776 44 7888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
|..+|.+|.+.|++++|...|.+++++.|.. +.+..|+|..+.-.|+++.|..++..+....+.+..+..+++.+...
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHH
Q psy16611 270 EGHIERASTYLQAAA 284 (341)
Q Consensus 270 ~g~~~~A~~~~~~al 284 (341)
+|++++|.....+-+
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 999999998876544
No 85
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.66 E-value=1e-14 Score=107.13 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=93.1
Q ss_pred Hhhc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 214 LSLA-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 214 l~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
..+. ++. .+..+.+|..++..|++++|...|+-...++|.+...|++||.++..+|+|++|+..|.+++.++|+++.
T Consensus 27 ~~~~~~~~--l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 27 LDDDVTQP--LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HCCChHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 3444 555 7777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
.++++|.|+...|+.+.|.+.|+.++...-.++.-.....+....+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 8888888888888888888888888877644444444444444443
No 86
>KOG1156|consensus
Probab=99.66 E-value=2e-14 Score=125.27 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=162.6
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 201 (341)
.+.-+.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|..+...++..++.+..+|..+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 34444556677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16611 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 281 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (341)
+|++|+++|+.|+.+.|++ ..+|..++....++++++.....-.+.++..|.....|..++..+...|++..|...++
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN--~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDN--LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887 77888888888888888877777777777777777777777777777777777777666
Q ss_pred HHHHhC---CCc---------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 282 AAAASS---PYL---------------------------------------YETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 282 ~al~~~---p~~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
...+.. |+. .......+.++.+++++++|...|...+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 654433 111 11223467888899999999999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy16611 320 LHPGHSYSWDILRKLE 335 (341)
Q Consensus 320 ~~p~~~~~~~~l~~~~ 335 (341)
.+|++...+..+..+.
T Consensus 248 rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKAL 263 (700)
T ss_pred hCchhHHHHHHHHHHH
Confidence 9999988776666554
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.65 E-value=8.5e-15 Score=109.18 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=66.2
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16611 175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 175 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 254 (341)
.|++++..+|++....+.+|..+...|++++|+..+++++..+|.+ ..++..+|.++...|++++|+..++++++.+|
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455555555555555555555555555555555555555555555 55555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
.++..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 55555555555555555555555555555555555443
No 88
>KOG1128|consensus
Probab=99.63 E-value=1.2e-14 Score=128.35 Aligned_cols=192 Identities=17% Similarity=0.206 Sum_probs=154.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH-----------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE----------- 188 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----------- 188 (341)
.....++..+...|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++.
T Consensus 399 q~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC
Confidence 45555666666666666666666654 3344455555555555555555555555 222222
Q ss_pred -----------------HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 189 -----------------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 189 -----------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
+...+|......++|.++.++++..++++|-. ...|+.+|.+..+.++++.|.+.|..++.
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 33444555556789999999999999999999 99999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 252 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
++|++...|++++..|.+.|+..+|...++++++.+-++..+|.|...+..+.|.+++|+..|.+.+.+.-
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988999999999999999999999999999887643
No 89
>KOG0553|consensus
Probab=99.63 E-value=8.9e-15 Score=116.91 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=57.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
.-|.-++..++|.+|+..|.+||+++|.+ +..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n--AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTN--AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 33444444455555555555555555555 5555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16611 272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 306 (341)
++++|++.|+++++++|++...+.+|..+-.+.++
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 55555555555555555555444444444444433
No 90
>KOG1127|consensus
Probab=99.62 E-value=1.9e-14 Score=130.76 Aligned_cols=204 Identities=14% Similarity=0.064 Sum_probs=185.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16611 132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 211 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 211 (341)
..+...|...|-++++.++..+.++..+|.+|....+...|.++|+++.++++.+..++-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34578899999999999999999999999999998899999999999999999999999999999999999999999987
Q ss_pred HHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 212 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
.+-+..|.......|..+|..|.+.+++..|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 77777766544566777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.+.+..+.....+|+|.+|+..+...+....+.......++.+.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999887666655555554443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.62 E-value=1.5e-13 Score=119.86 Aligned_cols=174 Identities=15% Similarity=0.019 Sum_probs=148.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHH
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 225 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 225 (341)
+|+++.++..+|.++...|+.+.+...+.++....+.+ .+.....+.++...|++++|...++++++.+|.+ ..+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD--LLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHH
Confidence 78999999999999999999999999999988877644 5567788999999999999999999999999999 766
Q ss_pred HHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 226 WYNISHVAIGISD----TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 226 ~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
+.. +..+...|+ ...+.+.+......+|.....+..+|.++...|++++|+..++++++++|++..++..+|.++
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 664 555544444 444444444433566777788889999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 302 NLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
...|++++|+.++++++...|.++
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCc
Confidence 999999999999999999987543
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.57 E-value=2.9e-12 Score=108.98 Aligned_cols=153 Identities=17% Similarity=0.097 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16611 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 229 (341)
|....++|..+..++..|++++|+..++..+...|+++..+...+.++...++..+|.+.+++++.++|.. ...+.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 309 (341)
|.++++.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|.. ..+..|...|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999998776544 45666777889999
Q ss_pred HHHHHHHHHhcC
Q psy16611 310 SYNIVKKSLDLH 321 (341)
Q Consensus 310 A~~~~~~al~~~ 321 (341)
|+..+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998888776
No 93
>KOG1127|consensus
Probab=99.57 E-value=3.1e-14 Score=129.42 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=187.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|..+|..|...+++..|+..|+.++..+|.+.+.|..+|.+|...|.+..|++.|.++..++|.+....+..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 44566788899999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred cCChhHHHHHHHHHHhh---------------------------------------------------------------
Q psy16611 200 SQQYDMVVTCFERALSL--------------------------------------------------------------- 216 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~--------------------------------------------------------------- 216 (341)
.|+|.+|+..+...+..
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 88888888877766554
Q ss_pred -----------------------------cccc-----------------chHHHHHHHHHHHHh--------cCCHHHH
Q psy16611 217 -----------------------------ALNE-----------------NAADVWYNISHVAIG--------ISDTRLA 242 (341)
Q Consensus 217 -----------------------------~~~~-----------------~~~~~~~~la~~~~~--------~g~~~~A 242 (341)
.+++ .....|+++|..|+. +.+...|
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 0111 012357888877765 2344579
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
+.+++++++++.++...|+.||.+ ...|.+.-|..+|-+.+...|.....|.|+|.++.+..+++-|...|.++..++|
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 999999999999999999999988 6679999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy16611 323 GHSYSWDILRKLEQYFS 339 (341)
Q Consensus 323 ~~~~~~~~l~~~~~~~~ 339 (341)
.+...|...+.+.....
T Consensus 882 ~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVG 898 (1238)
T ss_pred hhhHHHHHHHHhHHHHH
Confidence 99999988887766543
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=6.7e-12 Score=112.01 Aligned_cols=198 Identities=12% Similarity=0.009 Sum_probs=141.6
Q ss_pred hcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-
Q psy16611 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ- 201 (341)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~- 201 (341)
+-...++...|++++|+++++.....-.+........|.++..+|++++|...|+..+..+|++...+..+..+.....
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 3345677778888888888877777777777777788888888888888888888888888888777777776663222
Q ss_pred ----ChhHHHHHHHHHHhhcc-----------------------------------------------------------
Q psy16611 202 ----QYDMVVTCFERALSLAL----------------------------------------------------------- 218 (341)
Q Consensus 202 ----~~~~A~~~~~~al~~~~----------------------------------------------------------- 218 (341)
+.+.-..+|++.....|
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 23334444444322200
Q ss_pred ----------------------ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16611 219 ----------------------NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 219 ----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 276 (341)
......+++.+++.|...|++++|+++.+++|+..|..++.+...|.++...|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 0111235567788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
...++.+-.++..+-.+....+..+.+.|+.++|...+.....-
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 88888888888877777777777888888888887777665443
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.56 E-value=2.9e-13 Score=99.46 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
++.-+..+.+|..++..|++++|...|+-+..++|.+ ...|+++|.++..+|+|.+|+..|.+++.++|+++..++++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 3344444444555555555555555555555555554 55555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 264 AVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
|.++...|+.+.|.+.|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 555555555555555555554443
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.56 E-value=2e-13 Score=117.81 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
...|..++..|+|++|+.+|++++.++|.+ ..+++++|.++...|++++|+..+++++.++|.++.+++.+|.++..+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 344555556666666666666666666666 666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16611 271 GHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304 (341)
Q Consensus 271 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 304 (341)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666665555555554433
No 97
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.55 E-value=1.1e-11 Score=119.93 Aligned_cols=192 Identities=9% Similarity=0.024 Sum_probs=105.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD--ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l 193 (341)
..|..+...|.+.|++++|+.+|+++.... | +...|..+...|.+.|++++|.+.|+++... .| +...|..+
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaL 585 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHH
Confidence 566667777888888888888887776543 3 4566777777777777777777777776542 23 34555666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIGISDTRLAIQCLHLALSID--SSHGLSQNNLAVLEARE 270 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 270 (341)
...|.+.|++++|.++|+++.+.+. .+ ...|..+...|.+.|++++|+..|+++.+.. |+ ..+|..+...|.+.
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~ 662 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Confidence 6666666666666666666665542 22 4455555555555555555555555555431 22 33344444444444
Q ss_pred CCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 271 GHIERASTYLQAAAASS-PYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 271 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
|++++|.+.++++.+.. +.+..++..+...|.+.|++++|...|++
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444444444443322 11222333333344444444444444333
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=3e-12 Score=108.92 Aligned_cols=153 Identities=17% Similarity=0.074 Sum_probs=145.4
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
|....+++..+..++..|++++|+..++..+...|++ +..+-..+.+++..|+.++|.+.+++++..+|+....+.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 6778889999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
|.++.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+...+.-+...+...+...++..
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999988888877777766654
No 99
>KOG1128|consensus
Probab=99.54 E-value=4.3e-13 Score=118.75 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (341)
.|.....-..++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++.+|+ +..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d---~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD---PRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc---chhHHH
Confidence 3445667778999999999999999999975 45667778888888888888888888884333 333333
Q ss_pred H----------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16611 229 I----------------------------SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280 (341)
Q Consensus 229 l----------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 280 (341)
+ |......++|.++.++++..++++|-....|+.+|.+..+.++++.|.+.|
T Consensus 463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 3 333344689999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 281 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
..++.++|++..+|.+++..|...++..+|...++++++.+-++...|.+...+.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs 597 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS 597 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh
Confidence 9999999999999999999999999999999999999999887777766554443
No 100
>KOG1130|consensus
Probab=99.53 E-value=6.7e-14 Score=116.14 Aligned_cols=201 Identities=16% Similarity=0.141 Sum_probs=159.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------hHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQ--------------------PEVAL 173 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~--------------------~~~A~ 173 (341)
.+--+||..+.-.|.|++|+.++.+-+..... ...++|++|.+|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 34456788899999999999998887765322 46789999999988765 45566
Q ss_pred HHHHHHHHcCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHH
Q psy16611 174 LFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAI 243 (341)
Q Consensus 174 ~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~ 243 (341)
++|..-+++... ...++-+||+.|+..|+|+.|+..-+.-+.+.... ....++.++|.++.-.|+++.|+
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 666665554332 23467899999999999999999988888776544 23468899999999999999999
Q ss_pred HHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHH
Q psy16611 244 QCLHLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY------LYETHYNQAVISNLAGDLQESY 311 (341)
Q Consensus 244 ~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~ 311 (341)
++|+..+.+. ...+...+.+|..|....++++|+.++.+-+.+... ...+++.||..+...|..++|+
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 9999987653 123567889999999999999999999998876532 2347888999999999999999
Q ss_pred HHHHHHHhc
Q psy16611 312 NIVKKSLDL 320 (341)
Q Consensus 312 ~~~~~al~~ 320 (341)
.+.++.+++
T Consensus 336 ~fae~hl~~ 344 (639)
T KOG1130|consen 336 YFAELHLRS 344 (639)
T ss_pred HHHHHHHHH
Confidence 998888765
No 101
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.52 E-value=3.2e-11 Score=116.69 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=129.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR----DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLA 194 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 194 (341)
..|..+...|.+.|++++|.++|.++... .| +...+..+...|.+.|++++|++.|+++.+.+ +.+...|..+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 55666777777888888888888877652 33 45667777777777788888888887777765 34566777777
Q ss_pred HHHHHcCChhHHHHHHHHHHhhc--cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhC
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 271 (341)
..|.+.|++++|+.+|+++.+.. |+ ...|..+...|.+.|++++|.++++++.+.. +.+..++..+...|.+.|
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPD---EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 77777777777777777776552 22 4556666666666677777777766666543 334556666666666666
Q ss_pred CHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 272 HIERASTYLQAAAAS--SPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 272 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
++++|+..|++.... .| +...|..+...|.+.|++++|.+.|++...
T Consensus 699 ~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666665442 23 344566666666666666666666665543
No 102
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.50 E-value=6.7e-12 Score=118.93 Aligned_cols=195 Identities=11% Similarity=-0.023 Sum_probs=102.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..+..+...+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|+.+...|.
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~ 402 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 345555556666666666666666665543 33444555555556666666666666555432 23345555555555
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C---------------------
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID---S--------------------- 254 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p--------------------- 254 (341)
..|+.++|++.|++..+..... ....+..+...+...|..++|.++|+.+.+.. |
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 5555555555555554432111 03334444444445555555555555444321 1
Q ss_pred ----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 255 ----------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 255 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
.+..+|..+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++++|.+.+++..
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1233455555555555555555555555555555555555556666666666666666655554
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=1.2e-12 Score=113.01 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 235 (341)
+...|..++..|++++|+.+|.++++.+|.+..+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777777777777777777777777777 7777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
+|++++|+..|+++++++|++..+...++.+...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777777777776666666554443
No 104
>KOG2376|consensus
Probab=99.49 E-value=6.8e-12 Score=108.76 Aligned_cols=194 Identities=17% Similarity=0.110 Sum_probs=156.4
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 206 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 206 (341)
..+...|+|++|+....+++...|++..++.....++.+.++|++|+...+.-....-.+ ...+..+.|.++.++.++|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHH
Confidence 456678999999999999999999999999999999999999999995555433221111 2226889999999999999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------------
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------------------------------- 255 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------------------- 255 (341)
+..++ ..++.+ ..+....|++++++|+|++|+..|+..++.+.+
T Consensus 99 lk~~~---~~~~~~--~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 99 LKTLK---GLDRLD--DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred HHHHh---cccccc--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 99998 345555 678888999999999999999999987654321
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCc--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 256 HGLSQNNLAVLEAREGHIERASTYLQAAAASS-------PYL--------YETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+.+.+++.+.++...|+|.+|++.++.++.+. ..+ ..+...|+.++..+|+.++|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 34678899999999999999999999995432 111 126778999999999999999999999999
Q ss_pred CCCCHH
Q psy16611 321 HPGHSY 326 (341)
Q Consensus 321 ~p~~~~ 326 (341)
+|.+..
T Consensus 254 ~~~D~~ 259 (652)
T KOG2376|consen 254 NPADEP 259 (652)
T ss_pred cCCCch
Confidence 887753
No 105
>KOG1156|consensus
Probab=99.48 E-value=1.2e-11 Score=108.25 Aligned_cols=205 Identities=14% Similarity=0.082 Sum_probs=141.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.+|..+|.++....+|++|+++|+.|+.+.|+|..+|..++....++++++.....-.+.++..|..-..|...+..+..
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhhc---ccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16611 200 SQQYDMVVTCFERALSLA---LNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~---~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 273 (341)
.|++..|....+...+.. |+. ...........+....|.+++|++.+.+--...-+........+.++.+++++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 777777766666555443 222 22344455556666667766666665554333333344555678899999999
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCC
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESY-NIVKKSLDLHPGH 324 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~ 324 (341)
++|...|...+..+|++...+..+-.++.+-.+.-+++ ..|...-+..|.+
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 99999999999999999998888888886444444555 5666555555544
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.48 E-value=3.7e-12 Score=118.78 Aligned_cols=164 Identities=9% Similarity=-0.053 Sum_probs=145.7
Q ss_pred HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc-----
Q psy16611 147 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----- 221 (341)
Q Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----- 221 (341)
..+|.+..++..+...+...+++++|+..++.+++..|+....++.+|.++...+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 346889999999999999999999999999999999999999999999999999988877666 5555544440
Q ss_pred ------------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 222 ------------AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 222 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
.-.+++.+|.||-++|++++|...|+++++.+|+++.+++++|..|... ++++|+.++.+++..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 0378999999999999999999999999999999999999999999999 999999999999876
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327 (341)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 327 (341)
+...+++.++..++.+.+..+|++.+.
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 666779999999999999999988665
No 107
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.48 E-value=6e-12 Score=119.23 Aligned_cols=191 Identities=9% Similarity=-0.025 Sum_probs=149.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCC 197 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 197 (341)
..|..+...|.+.|++++|+.+|++..... .-+...+..+...+...|++++|.+.+..+++.. +.+..++..+...|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 678889999999999999999999987653 2266788899999999999999999999999876 56778899999999
Q ss_pred HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHH
Q psy16611 198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 276 (341)
.+.|++++|...|++..+ .+ ...|+.+...|.+.|+.++|++.|+++.+.. ..+..++..+...+...|..++|
T Consensus 371 ~k~G~~~~A~~vf~~m~~---~d--~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR---KN--LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHCCCHHHHHHHHHhCCC---CC--eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999998764 24 6789999999999999999999999998753 22355666666777777777777
Q ss_pred HHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16611 277 STYLQAAAASSPY--LYETHYNQAVISNLAGDLQESYNIVK 315 (341)
Q Consensus 277 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (341)
..+|+...+..+- +...|..+...|.+.|++++|.+.++
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 7777777643211 12244445555555555555544444
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.48 E-value=3.4e-11 Score=98.09 Aligned_cols=165 Identities=9% Similarity=0.003 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWY 227 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~ 227 (341)
.+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++ ....+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34444455555555555555555555555555544332 2455555555555555555555555555554 3344455
Q ss_pred HHHHHHHhcC------------------CHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhCC
Q psy16611 228 NISHVAIGIS------------------DTRLAIQCLHLALSIDSSHG-----------------LSQNNLAVLEAREGH 272 (341)
Q Consensus 228 ~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~g~ 272 (341)
.+|.++...+ ...+|+..|++.++..|++. .--...|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5554432222 12345555555555555542 122356788999999
Q ss_pred HHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 273 IERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
|..|+.-++.+++..|+.. +++..++..|..+|..++|......
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999887654 4888899999999999998876653
No 109
>KOG1130|consensus
Probab=99.47 E-value=1.5e-13 Score=114.13 Aligned_cols=195 Identities=18% Similarity=0.192 Sum_probs=141.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH------cCCCcHHHHHHHHH
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQ------MGLYNAELFNNLAL 195 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~ 195 (341)
|.-+++.|++...+.+|+.+++...++. .+|..+|..|+.+++|++|+++-..=+. ..-..+...-+||+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4667888999999999999998876654 3467889999999999999887543222 12223445668888
Q ss_pred HHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHh
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISD--------------------TRLAIQCLHLALS 251 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~ 251 (341)
++-..|.|++|+.++.+-+.+...- ....+++++|.+|...|+ ++.|.++|.+-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 8888999999998888877664322 336788889988877653 3445556655555
Q ss_pred cCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 252 IDSS------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY------ETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 252 ~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
+... ...++-++|..|+-+|+|+.|+...+.-+.+..... .++.++|.++.-.|+++.|+++|++.+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4322 134667788888888899999888888777654433 3788888888889999999888888764
Q ss_pred c
Q psy16611 320 L 320 (341)
Q Consensus 320 ~ 320 (341)
+
T Consensus 264 L 264 (639)
T KOG1130|consen 264 L 264 (639)
T ss_pred H
Confidence 4
No 110
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=5.2e-11 Score=106.40 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=161.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCC---------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-----QPEVALLFYRRLLQMGLY--------- 185 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~--------- 185 (341)
...-..|.++...|++++|...|...++.+|++...+..+..+..... +.+.-..+|++.....|.
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L 118 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPL 118 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhc
Confidence 334557899999999999999999999999999988888877773222 333444444443222111
Q ss_pred ------------------------------------------------------------------------c--HHHHH
Q psy16611 186 ------------------------------------------------------------------------N--AELFN 191 (341)
Q Consensus 186 ------------------------------------------------------------------------~--~~~~~ 191 (341)
. ..+++
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~ 198 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY 198 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence 1 12458
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
.++..|...|++++|+++++++|...|.. ++.+...|.++...|++.+|.+.++.+..++..+-.+....+..+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 88999999999999999999999999999 9999999999999999999999999999999999988889999999999
Q ss_pred CHHHHHHHHHHHHHhCCCch-------hHHH--HHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 272 HIERASTYLQAAAASSPYLY-------ETHY--NQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~-------~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
+.++|...+..-...+.+.. -.|+ ..|.+|.+.|++..|++.|..+.+..
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999987655432111 1444 57899999999999999999888663
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.45 E-value=4.2e-12 Score=92.28 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYN 296 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 296 (341)
...++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4567888888888888888888888888877765 4677888888888888888888888888887765 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 297 QAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
+|.++...|++++|..++++++...|++..+....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 88888888888888888888888888887655443
No 112
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.45 E-value=3.6e-11 Score=95.69 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNI 229 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~l 229 (341)
..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.+...|.+ ....+++.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 344444444444555555555555444443332 2344444555555555555555555555544444 233444444
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHH
Q psy16611 230 SHVAIGI-----------SDTRLAIQCLHLALSIDSSHG-----------------LSQNNLAVLEAREGHIERASTYLQ 281 (341)
Q Consensus 230 a~~~~~~-----------g~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~ 281 (341)
|.+++.. +...+|+..|+..++..|++. .--+.+|..|.+.|.+..|+..++
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4443322 223355555555555555542 122346778888888888888888
Q ss_pred HHHHhCCCchh---HHHHHHHHHHHcCCHHHHH
Q psy16611 282 AAAASSPYLYE---THYNQAVISNLAGDLQESY 311 (341)
Q Consensus 282 ~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 311 (341)
.+++..|+... ++..++.+|.++|..+.|.
T Consensus 166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888887653 6777888888888877443
No 113
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=2.1e-10 Score=95.32 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=117.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
.+++.-+....+.|+++.+-.++.++-+..++ ...+....+.+....|++..|..-..++++..|.++.+......+|.
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~ 198 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 33444445555566666666666665555322 23344455555556666666666666666666666666655566666
Q ss_pred HcCChhHHHHHHHHHHhh--------------------------------------cccc--chHHHHHHHHHHHHhcCC
Q psy16611 199 YSQQYDMVVTCFERALSL--------------------------------------ALNE--NAADVWYNISHVAIGISD 238 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~--------------------------------------~~~~--~~~~~~~~la~~~~~~g~ 238 (341)
..|+|.+...++.+.-+. -|.. ..+.+...++.-+...|+
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 666655555544443222 0000 012233334444555555
Q ss_pred HHHHHHHHHHH-------------------------------HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 239 TRLAIQCLHLA-------------------------------LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 239 ~~~A~~~~~~a-------------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
.++|.+..+++ ++..|+++..+..+|..+.+.+.|.+|..+|+.+++..
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 55555555554 44456667777777777777777777777777777776
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 359 ~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 359 PS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 64 445667777777777777777777777743
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.44 E-value=3.8e-12 Score=106.14 Aligned_cols=202 Identities=17% Similarity=0.073 Sum_probs=153.7
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
...++..+...++.+..+..++..+.... .+.......|.++...|++++|++.+.+. .+.+.......++..
T Consensus 69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHH
Confidence 33344444433455566666655543322 23445567778888899999999988764 567888888899999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.++++.|.+.++.+.+.+.+. .-.....+.+.+..| .+.+|...|++.....+.++..++.++.++..+|+|++|.
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999998887766 444444444555555 6999999999988888889999999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNLAGDL-QESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
..+++++..+|++++++.+++.+....|+. +.+.+++.+....+|+++.....
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999999999998 66778888888899999765543
No 115
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.40 E-value=1.4e-11 Score=95.18 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 299 (341)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..|++++.+.|.+...+.+++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4455555555555555555555555555554332 2355555555555555555555555555555555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHHhcCCCCH
Q psy16611 300 ISN-------LAGDLQ-------ESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 300 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 325 (341)
++. ..|+++ +|+.+|++++..+|++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 555 445544 55666667777777653
No 116
>PLN03077 Protein ECB2; Provisional
Probab=99.40 E-value=9.6e-11 Score=113.72 Aligned_cols=188 Identities=11% Similarity=0.022 Sum_probs=154.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCC
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCFYSQQ 202 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 202 (341)
+-..|.+.|++++|...|+.. +.+...|..+...|...|+.++|+++|++..+. .| +...+..+-..+...|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcCh
Confidence 346788899999999998886 457888999999999999999999999998875 34 34456666677888999
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (341)
+++|..+|+...+..+-......|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999998744322211578889999999999999999999886 34454 67788888888889999999999999
Q ss_pred HHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 283 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
++++.|++...+..++.+|...|++++|.+..+...+
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887754
No 117
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.2e-11 Score=96.72 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q psy16611 205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERASTYLQ 281 (341)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 281 (341)
.-+.-++.-+..+|++ .+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 140 ~l~a~Le~~L~~nP~d--~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 140 ALIARLETHLQQNPGD--AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3334444444445555 5555555555555555555555555555555555555555554443322 2344555555
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 282 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+++..+|.+..+.+.||..++..|+|.+|...++..++..|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 5555555555555555555555555555555555555554444
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.38 E-value=2.4e-11 Score=94.26 Aligned_cols=121 Identities=18% Similarity=0.268 Sum_probs=94.4
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
.....++.+|..+...|++++|+.+|++++...|+. ....++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 455677888888888888888888888888776654 1246788888888888888888888888888888888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
|.++...|+...+...+..++. .+++|..++++++.++|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887776665555442 26788888888888888873
No 119
>PLN03077 Protein ECB2; Provisional
Probab=99.38 E-value=2.2e-10 Score=111.31 Aligned_cols=145 Identities=11% Similarity=0.071 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSL--ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--SSHGLSQN 261 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 261 (341)
+...|..+...|...|+.++|+++|++..+. .|+ ...+..+...+.+.|++++|.++|+.+.+.. ..+...|.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd---~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD---EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 4445555566666666666666666665543 232 2344444455666666666666666665322 12235566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.+..++.+.|++++|.+.+++. .+.|+ ..+|..|...+...|+.+.+....++.+++.|++...+..+..+.
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 6666666677777776666654 23342 455666666666667777777777777777777777666665554
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.37 E-value=3.7e-11 Score=93.22 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16611 151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227 (341)
Q Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (341)
.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.++++++...|.+ ...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHH
Confidence 456678889999999999999999999998876653 4688999999999999999999999999999988 88899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
.+|.++...|+...+...+.+++. .+++|+.++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 999999998888777766666542 3677888888888888776
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.37 E-value=4.2e-10 Score=91.67 Aligned_cols=164 Identities=7% Similarity=-0.086 Sum_probs=137.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA---IACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 193 (341)
...+..|..++..|++++|+..|++++...|....+ .+.+|.+|+..+++++|+..|++.++.+|++ +.+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 557778899999999999999999999999987655 4899999999999999999999999998876 4678888
Q ss_pred HHHHHHcC---------------C---hhHHHHHHHHHHhhcccc-chHHH--------------HHHHHHHHHhcCCHH
Q psy16611 194 ALCCFYSQ---------------Q---YDMVVTCFERALSLALNE-NAADV--------------WYNISHVAIGISDTR 240 (341)
Q Consensus 194 a~~~~~~~---------------~---~~~A~~~~~~al~~~~~~-~~~~~--------------~~~la~~~~~~g~~~ 240 (341)
|.++...+ + ..+|+..|++.++..|++ ...++ -+.+|..|.+.|.|.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 88764443 1 347889999999999988 11222 145688899999999
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 241 LAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 241 ~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
.|+.-++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999988765 578899999999999999998877554
No 122
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.37 E-value=1.9e-11 Score=84.76 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 304 (341)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777777777777777777777677777777777777777777777777777777767777777777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q psy16611 305 GDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 305 g~~~~A~~~~~~al~~~p 322 (341)
|++++|..++.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776665
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.37 E-value=1.7e-10 Score=91.75 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---LSQN 261 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 261 (341)
++..++..|..++..|+|.+|+..|++++...|.. ....+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46778999999999999999999999999999887 6678999999999999999999999999999998874 5788
Q ss_pred HHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCchhH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy16611 262 NLAVLEAREG-----------HIERASTYLQAAAASSPYLYET-----------------HYNQAVISNLAGDLQESYNI 313 (341)
Q Consensus 262 ~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~ 313 (341)
.+|.++.... ...+|+..|+..+...|++..+ -+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876543 3458999999999999987542 23578889999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 314 VKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 314 ~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
++.+++..|+.......+..+...
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHH
Confidence 999999999997765555554443
No 124
>KOG4340|consensus
Probab=99.36 E-value=4.3e-11 Score=95.73 Aligned_cols=188 Identities=15% Similarity=0.056 Sum_probs=162.8
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16611 129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 208 (341)
Q Consensus 129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 208 (341)
+.+..+|.++++++..-.+..|.+...+..+|.||+...++..|-.+|++.-.+.|.........+..++..+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 209 CFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
+.........- .......-+.+.+..+++..+....++.- ..+++....+.|.+.++.|+++.|++-|+.+++...
T Consensus 100 V~~~~~D~~~L--~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 100 VAFLLLDNPAL--HSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHhcCCHHH--HHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 98877654211 24555556677778888888877666532 125678899999999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
-++-.-++++.+.++.|+++.|+++..+.++.
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 88889999999999999999999998887754
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.36 E-value=4.1e-11 Score=92.67 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHH
Q psy16611 133 NNMPMSVKYYKLILKRDATC--MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 133 g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~ 207 (341)
..+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33555555555554444333 3445666666666666666666666666554432 235666666666666666666
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhc
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGI 236 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~ 236 (341)
..|++++.+.|.. ...+.++|.++...
T Consensus 93 ~~~~~Al~~~~~~--~~~~~~la~i~~~~ 119 (168)
T CHL00033 93 EYYFQALERNPFL--PQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHhCcCc--HHHHHHHHHHHHHh
Confidence 6666666666655 55566666666533
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.36 E-value=3.7e-11 Score=87.29 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLA 264 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~ 264 (341)
.++.+|..+...|++++|+..|++++..+|++ ....+++.+|.++...|++++|+..|++++...|++ +.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555555555555555555555555554443 113445555555555555555555555555555443 34455555
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
.++...|++++|+..++++++..|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555443
No 127
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.36 E-value=2.4e-11 Score=101.36 Aligned_cols=167 Identities=17% Similarity=0.084 Sum_probs=140.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
...+..|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+...+....+++.+.
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 44566678888899999999988764 5788888899999999999999999999999888877766666667666
Q ss_pred cC--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH-HHH
Q psy16611 200 SQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI-ERA 276 (341)
Q Consensus 200 ~~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A 276 (341)
.| ++.+|..+|++.....+.+ +..++.++.+++.+|+|++|.+.+++++..+|.+++++.+++.+....|+. +.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 66 6999999999998887788 899999999999999999999999999999999999999999999999998 667
Q ss_pred HHHHHHHHHhCCCchhH
Q psy16611 277 STYLQAAAASSPYLYET 293 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~ 293 (341)
.+++.+....+|+++.+
T Consensus 256 ~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhCCCChHH
Confidence 78888888889987653
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.4e-11 Score=96.60 Aligned_cols=120 Identities=18% Similarity=0.103 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHH
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQC 245 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~ 245 (341)
.+.-+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++ ++.+..+|.+++.+. ...++...
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4444455555555666666666666666666666666666666666666666 666666665554332 24456666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
++++++.+|.+..+.+.||..++..|+|.+|+..++..++..|.+
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 666666666666666666666666666666666666666655544
No 129
>KOG3785|consensus
Probab=99.35 E-value=3.6e-10 Score=92.63 Aligned_cols=194 Identities=20% Similarity=0.139 Sum_probs=138.7
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 129 FEGLNNMPMSVKYYKLILKRDATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 129 ~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
+....+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+...+.-+.+.+.+|+.+++..|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4457889999999888776554433 556678999999999999999999998877778899999999999999999998
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
....++ |++ +-....+-.+..+.++-++-. .|.+.+. +..+-...++.+.+..-.|.+|+..|++.+..+
T Consensus 112 ~~~~ka----~k~--pL~~RLlfhlahklndEk~~~-~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKA----PKT--PLCIRLLFHLAHKLNDEKRIL-TFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhC----CCC--hHHHHHHHHHHHHhCcHHHHH-HHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 877665 333 222222223333444433332 2333332 122344556677777778888888888888877
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
|+....-..++.||.++.-++-+.+.++-.++..|+++-+...++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 777777777888888888888888888888888888877665443
No 130
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=3.8e-09 Score=88.03 Aligned_cols=211 Identities=10% Similarity=-0.023 Sum_probs=173.1
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHc
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYS 200 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 200 (341)
..+-|..-+..|+|.+|.+...+.-+..+...-++..-+..-.++|+++.+-.++.++-+..++ ...+....+.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4455677778999999999999988877777777888888999999999999999999998544 456777889999999
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------------------
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--------------------------- 253 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 253 (341)
|+++.|.....++++..|.+ +.+......+|...|+|.+...++.+.-+..
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~--~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRH--PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCchhHHHHHHHHHHhCcCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999 9999999999999999999887776644321
Q ss_pred ---------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------------------HhC
Q psy16611 254 ---------------SSHGLSQNNLAVLEAREGHIERASTYLQAAA-------------------------------ASS 287 (341)
Q Consensus 254 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------------------~~~ 287 (341)
..++.....++.-+..+|++++|.+..++++ +..
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 1124455566777888999999988877764 345
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
|+++..+..||..+.+.+.+.+|..+|+.+++..|+..+ +..++...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~ 371 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADAL 371 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHH
Confidence 777789999999999999999999999999999887543 33444433
No 131
>KOG3785|consensus
Probab=99.35 E-value=7.3e-11 Score=96.62 Aligned_cols=211 Identities=16% Similarity=0.134 Sum_probs=161.6
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------------cCC---
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ--------------MGL--- 184 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------~~p--- 184 (341)
.+-+|.+++..|+|++|...|.-+...+.-+.+.+.+++.+++.+|.|.+|.....++-+ ++.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 445679999999999999999999987777889999999999999999999887766422 111
Q ss_pred ---------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 185 ---------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 185 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
+..+-...|+.+.+..-.|++|+++|++.+.-+|+. ......++.||.++.-++-+.+.+.-.++..|+
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey--~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY--IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh--hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 112224567777777889999999999999999998 888899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh--CCH----------------HHHHHHHHH----------HHHhCCC----chhHHHHHHHHHHH
Q psy16611 256 HGLSQNNLAVLEARE--GHI----------------ERASTYLQA----------AAASSPY----LYETHYNQAVISNL 303 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~--g~~----------------~~A~~~~~~----------al~~~p~----~~~~~~~l~~~~~~ 303 (341)
+..+.+..+...++. |+. +.+...++. +++.-|. -+++..+|...|.+
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 988888777766654 222 122222211 1222222 34588899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 304 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
+++.++|+...+. ++|..+.-+...+.+...
T Consensus 298 q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 298 QNDVQEAISLCKD---LDPTTPYEYILKGVVFAA 328 (557)
T ss_pred cccHHHHHHHHhh---cCCCChHHHHHHHHHHHH
Confidence 9999999887664 788887766655554443
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.35 E-value=1.3e-10 Score=87.49 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHH
Q psy16611 166 NDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRL 241 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~ 241 (341)
.++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|++++...|+. ....+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555555554 3344555555555555555555555555554333 223345555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5555544 2222333444555555555555555555555544
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.34 E-value=7.7e-12 Score=81.20 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG-DLQESYNIVKKSLDLHP 322 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 322 (341)
+.+|..+|.++...|++++|+..|+++++++|++..+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555554
No 134
>KOG1915|consensus
Probab=99.32 E-value=1.7e-09 Score=92.02 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=191.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|+..|.--..++++..|..+|++++..+..+...|...+.+-++..+...|...+.+++.+-|.-...|+....+-..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56777788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|+...|..+|++-+...|+ ..+|......-...++.+.|...|++.+-..|+ ...|...+..-.+.|+...|...
T Consensus 154 LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPD---EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999998 588998888888999999999999999988865 67889999999999999999999
Q ss_pred HHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhh
Q psy16611 280 LQAAAASSPYLYE---THYNQAVISNLAGDLQESYNIVKKSLDLHPGH--SYSWDILRKLEQYFS 339 (341)
Q Consensus 280 ~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~ 339 (341)
|++|++.-.++.. .....+..-..+..++.|...|+-+++.-|.+ .+.+..+....++++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 9999987665433 55567777788899999999999999999988 556666666655554
No 135
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.32 E-value=1.5e-10 Score=97.11 Aligned_cols=164 Identities=17% Similarity=0.130 Sum_probs=95.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHH
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNI 229 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~l 229 (341)
|.+|...|++++|.++|.++....- .-...+...+.++... ++++|+.+|++++.+.-.. .....+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4555556666666666666544321 1123344555555444 7777777777777653222 224566777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-------hHHH
Q psy16611 230 SHVAIGI-SDTRLAIQCLHLALSIDSS--H----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-------ETHY 295 (341)
Q Consensus 230 a~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 295 (341)
|.+|... |++++|+++|+++++.... . ...+..+|.++...|+|++|+..|++.....-++. ..++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 7777776 7777777777777765321 1 34556677777777777777777777766432211 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
..+.|+...|++..|...+++....+|..
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56667777777777777777777777654
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.31 E-value=5e-11 Score=82.54 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
++.+|.++...|++++|+..++++++..|.+ ..++..+|.++...+++++|+..+++++...|.+..++..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3444555555555555555555555555544 44555555555555555555555555555555555555555555555
Q ss_pred hCCHHHHHHHHHHHHHhCC
Q psy16611 270 EGHIERASTYLQAAAASSP 288 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p 288 (341)
.|++++|...+.+++...|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555554443
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=99.30 E-value=1.8e-10 Score=85.22 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
.+..+..|.-++..|++++|...|+-..-.+|.+.+.|..||.++..+++|++|+..|..+..++++++...+..|.|+.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 303 LAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.+|+.++|..+|+.++. .|.+..
T Consensus 117 ~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 117 LMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HhCCHHHHHHHHHHHHh-CcchHH
Confidence 66666666666666666 344433
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=1.9e-11 Score=79.34 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSP 288 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 288 (341)
+..|..+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5667777777777777777777777777777777777777777777777 57777777777777665
No 139
>PRK11906 transcriptional regulator; Provisional
Probab=99.30 E-value=1.2e-09 Score=93.88 Aligned_cols=163 Identities=10% Similarity=0.093 Sum_probs=135.9
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHc---------CChhHHHHHHHHHHhhccccc
Q psy16611 157 ACIGVNHFYNDQ---PEVALLFYRRLL---QMGLYNAELFNNLALCCFYS---------QQYDMVVTCFERALSLALNEN 221 (341)
Q Consensus 157 ~~la~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~ 221 (341)
+..|......+. .+.|+.+|.+++ .++|....++..++.|++.. ....+|....+++++++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 666766665543 567999999999 99999999999999998764 24567899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH-
Q psy16611 222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI- 300 (341)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~- 300 (341)
+.++..+|.++...++++.|...|++++.++|+.+.+|+..|.+....|+.++|...++++++++|.-..+-...-.+
T Consensus 338 -a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 338 -GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred -HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999765543332222
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q psy16611 301 SNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~ 321 (341)
.+-....++|+..|-+--+..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 417 MYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHcCCchhhhHHHHhhccccc
Confidence 334566788888887654443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.29 E-value=3.9e-10 Score=84.80 Aligned_cols=121 Identities=12% Similarity=-0.046 Sum_probs=104.1
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHc
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYS 200 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 200 (341)
......++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+...++.++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 34446899999999999999999988 5667889999999999999999999999987655 45788999999999
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
|++++|+..++.. ...+.. +.++..+|.++...|++++|+..|++++
T Consensus 99 ~~~d~Al~~L~~~-~~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQI-PDEAFK--ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHhc-cCcchH--HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999773 223333 7788999999999999999999999875
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.29 E-value=4.6e-10 Score=101.01 Aligned_cols=120 Identities=14% Similarity=0.023 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhh--ccccchHHHHHHHHHHHHhcCC
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--------YDMVVTCFERALSL--ALNENAADVWYNISHVAIGISD 238 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~--~~~~~~~~~~~~la~~~~~~g~ 238 (341)
+..|+.+|+++++++|+++.++-.++.++..... ...+....++++.+ ++.. +.++..+|..+...|+
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~--~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL--PRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC--hHHHHHHHHHHHhcCC
Confidence 5556666666666666666665555555433211 22233333333332 2222 4444444444444455
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
+++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 5555555555555554 244444555555555555555555555555554443
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.28 E-value=4.1e-10 Score=101.32 Aligned_cols=143 Identities=13% Similarity=0.006 Sum_probs=117.2
Q ss_pred HcCCCcHHHH--HHHHHHHHHcCC---hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC--------CHHHHHHHHH
Q psy16611 181 QMGLYNAELF--NNLALCCFYSQQ---YDMVVTCFERALSLALNENAADVWYNISHVAIGIS--------DTRLAIQCLH 247 (341)
Q Consensus 181 ~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~ 247 (341)
...|.+..+| +..|..+...++ ...|+.+|+++++++|++ ..++..++.++.... +...+....+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~--a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF--TYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3455665554 445555555444 779999999999999999 888888888775432 3456666667
Q ss_pred HHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 248 LALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 248 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
+++.. ++.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 76664 677788999999999999999999999999999999 578999999999999999999999999999999987
Q ss_pred H
Q psy16611 326 Y 326 (341)
Q Consensus 326 ~ 326 (341)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
No 143
>KOG1915|consensus
Probab=99.28 E-value=4e-09 Score=89.74 Aligned_cols=220 Identities=11% Similarity=0.102 Sum_probs=180.5
Q ss_pred ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH---------HHHHHHH-HHhcCChHHHHHHHHHH
Q psy16611 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA---------IACIGVN-HFYNDQPEVALLFYRRL 179 (341)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~la~~-~~~~~~~~~A~~~~~~a 179 (341)
..+|.|- .+|+.+-.+-...|+.+.-.+.|++++..-|-..+- |.+.+.. -....+.+.+.+.|+.+
T Consensus 316 ~~np~nY---DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 316 SKNPYNY---DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HhCCCCc---hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455555 889988888888999999999999999887753322 2222221 12568999999999999
Q ss_pred HHcCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 180 LQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 180 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
+++-|.. +.+|...|....++.+...|...+-.++...|.+ ..+.....+-.++++++....+|++.++..|.
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 9998864 5678889999999999999999999999999985 55666667778889999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE--THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
+..+|...|..-..+|+.+.|...|+-|+....-+.. .|......-...|.++.|..+|++.++..+... +|...+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 9999999999999999999999999999976543332 666777788889999999999999999987665 7766665
Q ss_pred HHH
Q psy16611 334 LEQ 336 (341)
Q Consensus 334 ~~~ 336 (341)
+..
T Consensus 549 fe~ 551 (677)
T KOG1915|consen 549 FEA 551 (677)
T ss_pred Hhc
Confidence 543
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.27 E-value=2.8e-10 Score=93.35 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=97.4
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHH
Q psy16611 223 ADVWYNISHVA-IGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHY 295 (341)
Q Consensus 223 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 295 (341)
...++..+..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677777765 56799999999999999999987 5799999999999999999999999999888774 56889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.+|.++..+|++++|...|+++++.+|++..+.....++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999987776665553
No 145
>KOG0543|consensus
Probab=99.27 E-value=1.8e-10 Score=96.48 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
..++.|++.|+.++++|.+|+..+.++|..+|.|..+++..|.++..+|+|+.|+..|++++++.|+|..+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999888888888887
Q ss_pred HcCCHHHH-HHHHHHHHhcCC
Q psy16611 303 LAGDLQES-YNIVKKSLDLHP 322 (341)
Q Consensus 303 ~~g~~~~A-~~~~~~al~~~p 322 (341)
+..++.+. .+.|.+++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 77666554 677888776543
No 146
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.27 E-value=7.4e-09 Score=84.46 Aligned_cols=204 Identities=22% Similarity=0.224 Sum_probs=179.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH-H
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILK--RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL-C 196 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~ 196 (341)
......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.........+. +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 5566677888999999999999999987 677888899999999999999999999999999988877666666666 8
Q ss_pred HHHcCChhHHHHHHHHHHhhccc-cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCHH
Q psy16611 197 CFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLEAREGHIE 274 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 274 (341)
+...|+++.|...+.+++...|. ......+...+..+...++++.++..+.+++...+. ....+..++..+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 99999999999999999887662 222667777777788999999999999999999999 6899999999999999999
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 275 RASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
+|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999987777888888888788899999999999999986
No 147
>KOG1070|consensus
Probab=99.27 E-value=3.2e-09 Score=100.68 Aligned_cols=217 Identities=14% Similarity=0.066 Sum_probs=184.4
Q ss_pred ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16611 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR-DAT----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184 (341)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 184 (341)
..+|+.. ..|+.+...+.+.++.++|.+.++++|.. ++. -..+|..+-+....-|.-+.-.+.|++|.+.+.
T Consensus 1452 rssPNSS---i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1452 RSSPNSS---ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred hcCCCcc---hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc
Confidence 4567777 66777778899999999999999999974 332 234565555555566777788889999988653
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNN 262 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 262 (341)
...++..|..+|...+++++|.++|+..++...+. ..+|..++..++.+++-+.|...+.+|++.-|. +..+...
T Consensus 1529 -~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1529 -AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred -hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 45678899999999999999999999999998877 999999999999999999999999999999987 7788889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
.+.+.++.|+-+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.....|++++.+.-.-..+.+...
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987654444444333
No 148
>KOG0543|consensus
Probab=99.27 E-value=1.8e-10 Score=96.43 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSIDSS---------------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
....|..|++.|+|..|...|++++..-.. -..++.|++.++.++++|.+|+....++|.++|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 344455555556666666555555543211 13478899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
..+++..|.++..+|+++.|+..|+++++++|+|..+...+..|.+...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888876543
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=99.26 E-value=4.9e-10 Score=96.14 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=132.9
Q ss_pred hcHHHHHHHcC---CchHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCcH
Q psy16611 123 LNLAKIFEGLN---NMPMSVKYYKLIL---KRDATCMEAIACIGVNHFYN---------DQPEVALLFYRRLLQMGLYNA 187 (341)
Q Consensus 123 ~~l~~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~ 187 (341)
+..|...+..+ ..+.|+.+|.+++ ..+|+...++..++.+++.. .+..+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 33444444443 3457889999999 99999999999999998864 235678999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL- 266 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~- 266 (341)
.++..+|.++...++++.|...|++++.++|+. +.+|+..|.+....|+.++|.+.++++++++|....+-...-.+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~--A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDI--ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999876544333333
Q ss_pred HHHhCCHHHHHHHHHHH
Q psy16611 267 EAREGHIERASTYLQAA 283 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~a 283 (341)
.+-....++|+..|-+-
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 417 MYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHcCCchhhhHHHHhhc
Confidence 44456778888877654
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.25 E-value=2.9e-11 Score=81.72 Aligned_cols=79 Identities=24% Similarity=0.221 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q psy16611 237 SDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIV 314 (341)
Q Consensus 237 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 314 (341)
|+++.|+.+++++++..|. +...++.+|.++++.|+|++|+..+++ .+.++.+...++.+|.++.++|++++|+.+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555555542 233444455555555555555555555 4444444444455555555555555555555
Q ss_pred HH
Q psy16611 315 KK 316 (341)
Q Consensus 315 ~~ 316 (341)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.25 E-value=4.6e-11 Score=80.73 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16611 167 DQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (341)
|+++.|+.+|+++++..|. +...++.+|.+++..|++++|+.++++ ...++.+ ....+.+|.++..+|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHHH
Confidence 4444444444444444442 233344444444444444444444444 4444433 4444444444444444444444
Q ss_pred HHHH
Q psy16611 245 CLHL 248 (341)
Q Consensus 245 ~~~~ 248 (341)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4443
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.24 E-value=5.5e-10 Score=91.63 Aligned_cols=104 Identities=10% Similarity=0.043 Sum_probs=58.9
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHH
Q psy16611 154 EAIACIGVNH-FYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYN 228 (341)
Q Consensus 154 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~ 228 (341)
..++..+..+ ...|++++|+..|+..++..|++ +.+++++|.+|+..|++++|+..|++++...|++ ...++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444443 33456666666666666665555 3455666666666666666666666666555554 33555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
+|.++...|++++|...|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66666556666666666666665555544
No 153
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=2.8e-09 Score=81.62 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=148.4
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
+..++..|..|-..|-..-|.-.|.+++.+.|+.++++..+|..+...|+++.|.+.|...++++|....++.+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 36677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
.-|++.-|.+-+.+-.+.+|++-....|..+.. ..-+..+|...+.+-.+...+....|+..+ ..+|+.. -..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS-~e~ 217 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKIS-EET 217 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhcc-HHH
Confidence 999999999999999999998833344444332 334566776655544333322222232222 2233332 123
Q ss_pred HHHHHHHhCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 279 YLQAAAASSPYL-------YETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 279 ~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
.++++.....++ .++++.+|..+...|+.++|...|+-++.-+-
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 344444433333 34788999999999999999999999887653
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.23 E-value=5.3e-11 Score=76.18 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=31.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+|..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445555555555555555555555555555555555555555555555555555555544
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.23 E-value=2.4e-09 Score=89.94 Aligned_cols=202 Identities=12% Similarity=0.034 Sum_probs=148.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CcH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNA 187 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~ 187 (341)
..+...|..|...+++++|...|.++....-. ....+...+.+|... ++++|+.+|++++.+.- .-.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55667789999999999999999998765321 234566777777666 99999999999988632 124
Q ss_pred HHHHHHHHHHHHc-CChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy16611 188 ELFNNLALCCFYS-QQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------ 256 (341)
Q Consensus 188 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 256 (341)
.++..+|.+|... |++++|+++|++++.+.... .....+..+|.++...|+|++|++.|++.....-++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 5788999999998 99999999999999985433 335677899999999999999999999998754221
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC
Q psy16611 257 -GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-----THYNQAVISNL--AGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 257 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p 322 (341)
...+...+.++...|++..|...+++....+|.... ....+..++.. ...+.+++..|.+...+++
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 234567788899999999999999999999886543 33444444443 3567777777776655554
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.22 E-value=9.2e-11 Score=75.05 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566677777777777777777777777777777777777777777777777777777776653
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=99.20 E-value=5.5e-10 Score=82.65 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=81.7
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16611 148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227 (341)
Q Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (341)
+.++..+..+..|.-++..|++++|...|+-....+|.+.+.|..||.++..+++|++|+..|..+..+.+++ +...+
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~f 109 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPVF 109 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCccc
Confidence 3444566677788888888888888888888888888888888888888888888888888888888887777 77788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
..|.|++.+|+.+.|+.+|..++.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 888888888888888888888877
No 158
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.18 E-value=1.2e-09 Score=77.90 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS---HGLSQNNLAV 265 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~ 265 (341)
++.+|.++-..|+.++|+.+|++++...... ....++..+|.++..+|++++|+..+++++...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3444444444444444444444444433222 12334444455555555555555555554444444 3344444444
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q psy16611 266 LEAREGHIERASTYLQAAA 284 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al 284 (341)
++...|++++|+..+-.++
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4445555555544444433
No 159
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=1.4e-08 Score=99.77 Aligned_cols=207 Identities=12% Similarity=0.063 Sum_probs=156.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------- 185 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 185 (341)
.....+|.++...|++++|...+.+++..... ...++..+|.++...|++++|...+++++.....
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 34566788888999999999999998865332 1235667888999999999999999998875211
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------ 256 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 256 (341)
....+..+|.++...|++++|...+++++...... .....+..++.++...|++++|...+.++..+....
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 23345678888999999999999999988763321 124566778889999999999998888876542110
Q ss_pred -----------------------------------H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------ch
Q psy16611 257 -----------------------------------G----LSQNNLAVLEAREGHIERASTYLQAAAASSPY------LY 291 (341)
Q Consensus 257 -----------------------------------~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 291 (341)
. ..+..++.++...|++++|...+++++..... ..
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0 01346778888999999999999999876322 23
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.++..+|.++...|+.++|...+.+++++......
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 47788999999999999999999999988755433
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.13 E-value=2.6e-09 Score=92.16 Aligned_cols=118 Identities=16% Similarity=0.257 Sum_probs=94.0
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 206 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 206 (341)
..+...++++.|+.+|++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445567788888888888777653 5566788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (341)
+.+.++++...|.. ...|+.|+.+|...|++++|+..++.+
T Consensus 254 L~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88888888888888 888888888888888888888776654
No 161
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1.9e-08 Score=98.83 Aligned_cols=200 Identities=13% Similarity=-0.025 Sum_probs=157.0
Q ss_pred hcHHHHHHHcCCchHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HH
Q psy16611 123 LNLAKIFEGLNNMPMSVKYYKLILKRDAT---------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AE 188 (341)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~ 188 (341)
...+.++...|+++++...+..+....+. .......++.++...|++++|..++++++...+.. ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 44567778899999999999988764321 13345567888899999999999999999854432 23
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------C
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--------H 256 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~ 256 (341)
+...+|.++...|++++|...+++++...... .....+..++.++...|++++|...+++++..... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 56778999999999999999999998764432 12346678899999999999999999999876321 2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPY-----LYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
...+..+|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 334567889999999999999999999876432 234566789999999999999999999987643
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.12 E-value=2.9e-09 Score=75.97 Aligned_cols=98 Identities=22% Similarity=0.208 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNI 229 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~l 229 (341)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|++ ....+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888888888888888888865443 4577888888888888888888888888887772 126677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q psy16611 230 SHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~ 251 (341)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877764
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.12 E-value=3e-09 Score=91.73 Aligned_cols=117 Identities=21% Similarity=0.146 Sum_probs=87.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 273 (341)
-.++...++++.|+..+++..+.+|+ +...++.++...++-.+|+..+.++++..|.+...+...+..+...+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34444567777888888777766644 3445677777777777888888888877777777777778888888888
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVK 315 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (341)
+.|+...+++..+.|++...|+.|+.+|...|++++|+..+.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 888888888888888877788888888888888888776655
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.11 E-value=1.4e-07 Score=76.89 Aligned_cols=199 Identities=19% Similarity=0.161 Sum_probs=173.0
Q ss_pred cCCchHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 132 LNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 56777788888888888776 378888999999999999999999999997 78888999999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 208 TCFERALSLALNENAADVWYNISH-VAIGISDTRLAIQCLHLALSIDS---SHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
..+.+++...+.. .......+. ++...|+++.|...+.+++...| .....+...+..+...++++.++..+.++
T Consensus 116 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP--DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999999988776 555555666 89999999999999999988776 45667777777788999999999999999
Q ss_pred HHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 284 AASSPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 284 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
+...+. ....+..++..+...+++++|...+.+++...|.....+..+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 243 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLA 243 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHH
Confidence 999999 6889999999999999999999999999999998444443333
No 165
>KOG4234|consensus
Probab=99.09 E-value=2.4e-09 Score=80.92 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 266 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 266 (341)
+-.-|+-++..|+|.+|..-|..++.+.|.. .....|.+.|.++++++.++.|+..+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3456889999999999999999999998876 4456778888899999999999999999999999888888888999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16611 267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 304 (341)
|.++.+|++|+..|++.++.+|....+.-..+.+--..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 99999999999999999999888776665555544333
No 166
>KOG2376|consensus
Probab=99.08 E-value=3.4e-08 Score=86.30 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 235 (341)
++.--..+...|+|++|.+...+.+...|++..+...-..++...++|++|+...++-...... ....+..+.|+++
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHHH
Confidence 3333445567899999999999999999999999999999999999999999555443322211 2233789999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------------
Q psy16611 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP--------------------------- 288 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------------------- 288 (341)
++..++|+..++ ..++.+..+....|.+++++|+|++|...|+..++.+.
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 999999999999 45666677888899999999999999999998854321
Q ss_pred ---C-chhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 289 ---Y-LYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 289 ---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
. +.+.++|.+.++...|+|.+|++.+++++
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1 33467899999999999999999999994
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.08 E-value=5.2e-10 Score=72.26 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
...|++++|+..|++++..+|++..+++.++.+|.+.|++++|...+++++..+|+++..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777776666666554
No 168
>KOG1941|consensus
Probab=99.06 E-value=4.9e-09 Score=86.32 Aligned_cols=208 Identities=18% Similarity=0.138 Sum_probs=161.8
Q ss_pred CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--
Q psy16611 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-- 186 (341)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 186 (341)
+..+.-.++++++..+....++.+++.+.+..+...... ..+...++..+..++.++++++.|+.+++...++
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 344555889999999999999999999999888764333 3567789999999999999999999999875443
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q psy16611 187 ----AELFNNLALCCFYSQQYDMVVTCFERALSLALNE--------NAADVWYNISHVAIGISDTRLAIQCLHLALSID- 253 (341)
Q Consensus 187 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 253 (341)
..++..||..+-...++++|.-+..++.++.... ....+++.++..+..+|+.-.|.++.+++.++.
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 2478899999999999999999999998874322 123467889999999999999999999998764
Q ss_pred -----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHH-----HHHHHHHH
Q psy16611 254 -----SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQE-----SYNIVKKS 317 (341)
Q Consensus 254 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~-----A~~~~~~a 317 (341)
+........+|.+|...|+.+.|...|+++......- ..++...+.++....-..+ |+++-+++
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~ 317 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRL 317 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 2235567789999999999999999999998754321 2355566666655444443 77777777
Q ss_pred HhcC
Q psy16611 318 LDLH 321 (341)
Q Consensus 318 l~~~ 321 (341)
+++.
T Consensus 318 levA 321 (518)
T KOG1941|consen 318 LEVA 321 (518)
T ss_pred HHHH
Confidence 7654
No 169
>KOG4648|consensus
Probab=99.06 E-value=1e-10 Score=95.35 Aligned_cols=207 Identities=6% Similarity=-0.090 Sum_probs=144.9
Q ss_pred hcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16611 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 202 (341)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 202 (341)
-..|.-|+++|+|++|+.+|.+++..+|.++..+.+.+..|+..+.|..|..-+..++.++.....+|...+..-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHh---------c-CCHHHHHHHHHHHH----------------------
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIG---------I-SDTRLAIQCLHLAL---------------------- 250 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---------~-g~~~~A~~~~~~al---------------------- 250 (341)
..+|.+-++.++.+.|.+ .+....++.+-.- . | +-+|..--.+++
T Consensus 181 ~~EAKkD~E~vL~LEP~~--~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN--IELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred HHHHHHhHHHHHhhCccc--HHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 999999999999999988 5544333322210 0 1 111222222222
Q ss_pred ----hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 251 ----SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 251 ----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
....++...-.+ +..|.+..+++.++....+++..+|........-+.+-.-.|...++...++.++.+.|.+..
T Consensus 258 ~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 258 VSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred eccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 111111111112 445555666666666666666666555544445555555566677777777777777777655
Q ss_pred HHHHHHH
Q psy16611 327 SWDILRK 333 (341)
Q Consensus 327 ~~~~l~~ 333 (341)
+...+.+
T Consensus 337 ~~~~~sr 343 (536)
T KOG4648|consen 337 PKETETR 343 (536)
T ss_pred chhhhhh
Confidence 5444443
No 170
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.06 E-value=2.7e-07 Score=73.36 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=98.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH---HHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA---ELFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l 193 (341)
..+++-|...++.|++++|+..|+.+....|.. ..+...++.++++.++++.|+...++-+.+.|.++ .+++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 334445555555555555555555555554432 23444555555555555555555555555544432 234444
Q ss_pred HHHHHHcC--------ChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 194 ALCCFYSQ--------QYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 194 a~~~~~~~--------~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
|.+++..= -..+|+..|+..+...|++ ...++...+. .++..+ +.--..+|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~--------------~~~d~L------A~~Em~Ia 174 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV--------------KLNDAL------AGHEMAIA 174 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH--------------HHHHHH------HHHHHHHH
Confidence 44433311 1123444444444444443 0011110000 000000 11123467
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQESYNIVKKSLDLH-PGHS 325 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 325 (341)
..|.+.|.+..|+..++.+++..|+.. +++..+..+|..+|-.++|.+.-. ++..+ |++.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p~s~ 238 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYPDSQ 238 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCCCCc
Confidence 888899999999999999998776543 477888888999999888877654 45444 5543
No 171
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.04 E-value=1.6e-08 Score=73.32 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh---HHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE---THYN 296 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 296 (341)
...++.-|...+..|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|.++. +++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4455566666666666666666666666555443 345556666666666666666666666666665543 5555
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 297 QAVISNLAGD---------------LQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 297 l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
.|.++..+.. ..+|...|++.+...|++..+...
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 6666655554 678889999999999988765543
No 172
>KOG4648|consensus
Probab=99.04 E-value=1.4e-09 Score=88.81 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 306 (341)
...|+-|+++|.|++|+.+|.+++...|.++..+.+.+.+|++..+|..|...+..++.++.....+|...+.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666666666666666666666666666666666666666666655555566666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 307 LQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 307 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
..+|.+.++.++.+.|++.+....++.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 66666666666666666555555444443
No 173
>KOG1070|consensus
Probab=99.03 E-value=5.2e-08 Score=92.77 Aligned_cols=198 Identities=16% Similarity=0.077 Sum_probs=171.9
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc----HHHHHHHHHHHHHcCChhHHHHH
Q psy16611 135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN----AELFNNLALCCFYSQQYDMVVTC 209 (341)
Q Consensus 135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~~~~~~A~~~ 209 (341)
-.+..+-|++.+..+|+..-.|..+...+.+.++.++|.+.+++++.. ++.. ..+|..+-++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 445677889999999999999999999999999999999999999974 3332 23455555555556777788899
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
|++|.++... ..++..|..+|...+.+++|.++|+.+++...+...+|..++..++++.+-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 9999887633 6789999999999999999999999999999888999999999999999999999999999999998
Q ss_pred --chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 290 --LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 290 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
+.......+.+.++.|+.+.+...|+-.+.-+|...+.|..+....
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 7778888999999999999999999999999999999997765543
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.03 E-value=2.2e-09 Score=70.36 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=48.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
..+|...+++++|+.++++++.++|+++..|..+|.++..+|++++|...|+++++..|++..+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3556667777777777777777777777777777777777777777777777777777776666555443
No 175
>KOG4340|consensus
Probab=99.03 E-value=1.5e-08 Score=81.49 Aligned_cols=192 Identities=15% Similarity=0.069 Sum_probs=154.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.....+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...........-...+...-+-+.+.
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 55667899999999999999999999999999888888999999999999999998877654322233455555667778
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.+++..+....++.-. .+. .....+.|.+.++.|++++|++-|+.+++...-++-+-++++.++++.|++..|+++
T Consensus 125 e~Dl~g~rsLveQlp~--en~--Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS--ENE--ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccC--CCc--cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 8888888777666421 133 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----CCCc-------------------------hhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16611 280 LQAAAAS----SPYL-------------------------YETHYNQAVISNLAGDLQESYNIVK 315 (341)
Q Consensus 280 ~~~al~~----~p~~-------------------------~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (341)
..+.++. .|.. ..++...+-++++.|+++.|.+.+.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 8887753 2321 1144456677888999988876654
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.02 E-value=1.4e-08 Score=81.27 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHH
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISH 231 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~ 231 (341)
.|..+.-++..|+|..|...|..-++..|++ +.++++||.+++.+|+|++|...|..+.+-.|+. ..++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666666677777777777777777776654 4567777777777777777777777777766666 44667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQ 260 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 260 (341)
+...+|+.++|...|+++++..|....+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777777777665443
No 177
>KOG4234|consensus
Probab=99.02 E-value=7.8e-09 Score=78.20 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (341)
.-+-.-|.-++..|+|++|..-|..++.+.|... ..|.+.|.+++.++.++.|+..+.++++++|.. ..++..
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~R 173 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALER 173 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHH
Confidence 3455678899999999999999999999998754 467788999999999999999999999999999 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
.+.+|.++..|++|++-|++.++.+|....+.-.+..
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999999999999999999999987665544443
No 178
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=1.8e-08 Score=80.75 Aligned_cols=108 Identities=14% Similarity=0.041 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHHHH
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQAV 299 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 299 (341)
.|+.+.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|+|++|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5556666666666666666666666666554 4566666666666666666666666666655544 346677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
+...+|+.++|...|+++++..|+...+......
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 7777777777777777777777776665544433
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.00 E-value=1.9e-09 Score=69.66 Aligned_cols=66 Identities=21% Similarity=0.130 Sum_probs=41.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 299 (341)
+..|++++|+..|++++..+|++..++..++.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 355666666666666666666666666666666666666666666666666666666555554443
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.97 E-value=2.4e-07 Score=69.46 Aligned_cols=149 Identities=17% Similarity=0.086 Sum_probs=94.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-ccccchHHHHHHHHHHHHhcCCHHHH
Q psy16611 164 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-ALNENAADVWYNISHVAIGISDTRLA 242 (341)
Q Consensus 164 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~la~~~~~~g~~~~A 242 (341)
.+.=+.+....-..+.+...|.. .-.+.||..+...|++.+|..+|++++.- ..++ ...+..+++..+..+++..|
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--AAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--HHHHHHHHHHHHhhccHHHH
Confidence 33344555555555555555533 33456677777777777777777776652 3344 66677777777777777777
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 243 IQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 243 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
...+++..+.+|. .++....+|.++...|++.+|...|+.++...|+ +.+...++..+.++|+.++|..-+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 7777777776653 3556666677777777777777777777776664 44555667777777766665554433
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.95 E-value=7.1e-09 Score=67.95 Aligned_cols=66 Identities=21% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 295 (341)
..+|...+++++|++++++++..+|+++..+..+|.++..+|++++|+..|+++++..|++..+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 345566666666666666666666666666666666666666666666666666666666555443
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.93 E-value=4.7e-07 Score=67.98 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=133.0
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCChhH
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ-MGLYNAELFNNLALCCFYSQQYDM 205 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~ 205 (341)
....+.=|.+....-..+.+...|. ..-.+.+|......|++.+|...|++++. +.-.++..+..+++..+..+++..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 3444455666666666666666663 45678899999999999999999999986 566788899999999999999999
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
|...+++..+.+|....++....+|.++...|++.+|...|+.++...|+ +......+..+..+|+..+|...+....+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999887655788899999999999999999999999998876 67777889999999999998888776654
Q ss_pred h
Q psy16611 286 S 286 (341)
Q Consensus 286 ~ 286 (341)
.
T Consensus 222 ~ 222 (251)
T COG4700 222 T 222 (251)
T ss_pred H
Confidence 3
No 183
>KOG3081|consensus
Probab=98.92 E-value=1.6e-06 Score=68.98 Aligned_cols=160 Identities=15% Similarity=0.059 Sum_probs=93.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh---
Q psy16611 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG--- 235 (341)
Q Consensus 159 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--- 235 (341)
-+.+|...|++++|++..... .+.++...-..++.+..+++-|...++++..++.+. .+..+|..+..
T Consensus 114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA----TLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----HHHHHHHHHHHHhc
Confidence 344555555555555554441 233344444455555556666666666655554322 33334444332
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH-H
Q psy16611 236 -ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN-I 313 (341)
Q Consensus 236 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~ 313 (341)
.+.+.+|.-+|++.-...+..+..+..++.++..+|+|++|...++.++..++++++++.++..+-...|...++.. .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 24466677777776666666666777777777777777777777777777777777777777777666766655433 4
Q ss_pred HHHHHhcCCCCHHH
Q psy16611 314 VKKSLDLHPGHSYS 327 (341)
Q Consensus 314 ~~~al~~~p~~~~~ 327 (341)
+.+....+|+++-.
T Consensus 265 l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhcCCcchHH
Confidence 44444556666543
No 184
>KOG1586|consensus
Probab=98.90 E-value=5.3e-07 Score=70.12 Aligned_cols=182 Identities=15% Similarity=0.066 Sum_probs=122.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----C--CcHHHHHHHHHHHHHcCChhH
Q psy16611 132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG----L--YNAELFNNLALCCFYSQQYDM 205 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~ 205 (341)
.+++++|.++|.++- ..|...+++..|-..|.++-... . +-...|...+.+|. ..+..+
T Consensus 27 ~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEE 91 (288)
T ss_pred CcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHH
Confidence 457788888777763 33444455555555555554321 1 12334445555554 458999
Q ss_pred HHHHHHHHHhhcccc----chHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHH
Q psy16611 206 VVTCFERALSLALNE----NAADVWYNISHVAIGI-SDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIE 274 (341)
Q Consensus 206 A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~ 274 (341)
|+.++++++++..+. .....+..+|.+|... .++++|+.+|+++-+..... -..+...+..-..+++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998886554 1133456788888654 88999999999987664322 234455566667889999
Q ss_pred HHHHHHHHHHHhCCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 275 RASTYLQAAAASSPYLYE-------THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 275 ~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
+|+..|++.....-++.. .++.-|.|+....+.-.+...+++..+++|...+.+
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 999999998776554432 344567777777888888888899999999876654
No 185
>KOG2047|consensus
Probab=98.88 E-value=7.9e-07 Score=78.81 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=160.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY---------- 185 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------- 185 (341)
..|..+|..|...|+.+.|..+|+++++..-. -..+|...|..-....+++.|+++.+++...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 56888999999999999999999999886532 3578889999999999999999999998764211
Q ss_pred --------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC
Q psy16611 186 --------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--SS 255 (341)
Q Consensus 186 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 255 (341)
+..+|..++......|-++.....|++.+.+.--. +....|.|..+....-++++.+.|++.+.+. |.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT--Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT--PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 23467888888888999999999999999998888 9999999999999999999999999999987 45
Q ss_pred CHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 256 HGLSQNNLAVLE---AREGHIERASTYLQAAAASSPYLY--ETHYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 256 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
-.++|...-..+ +.-.+.+.|...|+++++..|... ..+..++..-.+-|--..|+..|+++-..-
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 556665433332 223478999999999999887322 255666777777788888888888766543
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.88 E-value=1.5e-07 Score=68.32 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYN 228 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~ 228 (341)
+..++.-|...+..|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++-++++|.+ ....+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4455666666666666666666666666555432 3455666666666666666666666666666665 33445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
.|.+++.+.. ..+...+..+ ...+...+|...|++.+...|++..
T Consensus 90 ~gL~~~~~~~-----~~~~~~~~~d--------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDE-----GSLQSFFRSD--------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhh-----hHHhhhcccc--------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 5555555433 0111111000 0011255778888888888887654
No 187
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.87 E-value=3.7e-08 Score=73.76 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 275 RASTYLQAAAASSPYLYETHYNQAVISNLAG-----------DLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
+|+.-|++++.++|+..+++.++|.+|...+ .|++|..+|+++.+.+|++...+..|...
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444444444555555555555555544432 24556666666666666666655554433
No 188
>KOG2047|consensus
Probab=98.86 E-value=2e-06 Score=76.37 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=165.3
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR-DAT-----CMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 182 (341)
+..+|.+. ..|.. ++-+..|+..+-+..|.++++. +|. -...|..+|..|...|+.+.|...|+++.+.
T Consensus 342 LRQn~~nV---~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 342 LRQNPHNV---EEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HhcCCccH---HHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 34444444 55555 5666788899999999998763 554 3467889999999999999999999999986
Q ss_pred CCC----cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----------------chHHHHHHHHHHHHhcCCHHHH
Q psy16611 183 GLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----------------NAADVWYNISHVAIGISDTRLA 242 (341)
Q Consensus 183 ~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A 242 (341)
.-. -..+|...|..-....+++.|+.+.+++....... ....+|..++......|-++.-
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 432 35788899999999999999999999997763221 1145677888888889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH---cCCHHHHHHHHHHH
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS--PYLYETHYNQAVISNL---AGDLQESYNIVKKS 317 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a 317 (341)
...|++.+.+.--.+....|.|..+....-++++.+.|++.+.+. |.-.++|..+-.-+.+ --+.+.|..+|+++
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999988889999999999999999999999999999886 4445566554333322 24788999999999
Q ss_pred HhcCC
Q psy16611 318 LDLHP 322 (341)
Q Consensus 318 l~~~p 322 (341)
++..|
T Consensus 577 L~~Cp 581 (835)
T KOG2047|consen 577 LDGCP 581 (835)
T ss_pred HhcCC
Confidence 99877
No 189
>KOG3081|consensus
Probab=98.86 E-value=3.4e-06 Score=67.12 Aligned_cols=162 Identities=17% Similarity=0.041 Sum_probs=111.4
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-- 199 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 199 (341)
...-+.++...|++++|.+..... .+.++...-..++.++.+++-|.+.++++.+.+.+ ..+..||..+..
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la 183 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLA 183 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHh
Confidence 334457777788888887776663 24555666666777777888888888877776543 333444444443
Q ss_pred --cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 200 --SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 200 --~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.+++.+|.-+|+..-+..+.. +......+.|++.+|+|++|...++.++..++.+++++.++..+-...|...++.
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 346777888888877766666 7778888888888888888888888888888888888888877777777765554
Q ss_pred H-HHHHHHHhCCCchh
Q psy16611 278 T-YLQAAAASSPYLYE 292 (341)
Q Consensus 278 ~-~~~~al~~~p~~~~ 292 (341)
. .+.+....+|.++.
T Consensus 262 ~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHhcCCcchH
Confidence 4 44444555566543
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=2e-08 Score=86.34 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=64.7
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS---QNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
+|++ +..|+++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 71 dP~~--a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKT--AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6777 9999999999999999999999999999999999854 9999999999999999999999999973
No 191
>KOG2796|consensus
Probab=98.85 E-value=2.8e-06 Score=67.44 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----ccccchHHHHHHH
Q psy16611 155 AIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSL----ALNENAADVWYNI 229 (341)
Q Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~l 229 (341)
+.+.+..++.-.|+|.-++..+.+.++.+ |..+.....||.+.++.|+.+.|..+|++.-+. +.......+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455666666677777777777777666 455666667777777777777777777644322 1111224455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
+.+|.-.+++.+|...|.+++..+|.++.+.++.+.++.-.|+..+|++.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 6666667777777777777777777777777777777777777777777777777776653
No 192
>KOG1941|consensus
Probab=98.84 E-value=8.1e-08 Score=79.32 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=152.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----cHHHHHHHH
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRD----AT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-----NAELFNNLA 194 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la 194 (341)
..+...+|.|++++.+--..+... .. ..+++.+++..+...-++.+++.+-+-.+.+... -..+...++
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 356667777877766544443322 11 2466788999999999999999988887775332 235677799
Q ss_pred HHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----C------HHHH
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS----H------GLSQ 260 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~ 260 (341)
..+...+.++++++.|++++++...+ ....++..+|..|....++++|.-+..++.++-.. + ..++
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 99999999999999999999986544 33467889999999999999999999999876421 2 3467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAASSP------YLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+.++..+..+|+..+|.++.+++.++.- ........+|++|...|+.+.|..-|+++...
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7899999999999999999999987642 22335667999999999999999999998865
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.84 E-value=6.2e-08 Score=83.34 Aligned_cols=70 Identities=27% Similarity=0.283 Sum_probs=66.7
Q ss_pred cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD---VWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 182 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
.+|+++..++++|..|+..|+|++|+..|+++++++|++ .. +|+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~--aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP--DEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999 74 59999999999999999999999999973
No 194
>KOG2796|consensus
Probab=98.81 E-value=9.9e-07 Score=69.94 Aligned_cols=186 Identities=16% Similarity=0.208 Sum_probs=149.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 204 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 204 (341)
-+.+....|+..+.+.-+...... ...+..........+..++.+++-+. .+.+.+..++...|.|.
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~ 194 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV 194 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence 356666778888887776665432 12223333344445778888887654 67788899999999999
Q ss_pred HHHHHHHHHHhhc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 205 MVVTCFERALSLA-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSI----D--SSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 205 ~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
-++..+.+.++.+ |.. +.....+|.+.++.|+.+.|..+|+..-+. + .....+..+.+.++.-.+++..|.
T Consensus 195 iS~d~~~~vi~~~~e~~--p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQE--PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred hhHHHHHHHHHhCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence 9999999999988 455 888899999999999999999999954433 2 334567788889999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
..|.+++..+|.++.+..+.+.|+...|+..+|++.++.++...|...
T Consensus 273 r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 273 RFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999999999999863
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.80 E-value=1.9e-06 Score=68.66 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWY 227 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~ 227 (341)
.+..|+.-|....+.|++++|+..|+.+....|.. ..+...++..+++.+++++|+...++-+.+.|.+ ....+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46778888888888888888888888888877654 4577788888888888888888888888888877 4455667
Q ss_pred HHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16611 228 NISHVAIGIS--------DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299 (341)
Q Consensus 228 ~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 299 (341)
..|.+++..- -..+|+..|++.+...|++.-+-.....+ ..+...+ ..--...|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHH
Confidence 7777664431 23456666777777777654321111110 1111111 112245788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
.|.+.|.+..|+..++.+++-.|+.......|..+...+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~ 215 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYY 215 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 9999999999999999999999988777777766665544
No 196
>KOG4555|consensus
Probab=98.77 E-value=8.8e-07 Score=62.42 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVL 266 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~ 266 (341)
..-|..+...|+.+.|++.|.+++.+.|.. +.+|++.++.+.-+|+.++|+.-+++++++.... -.++...|.+
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 344555555666666666666666666666 6666666666666666666666666666654332 2344555666
Q ss_pred HHHhCCHHHHHHHHHHHHHhCC
Q psy16611 267 EAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~~~p 288 (341)
|..+|+-+.|...|+.+-++..
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCC
Confidence 6666666666666666555443
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.77 E-value=2.4e-08 Score=66.32 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhc---c-cc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLA---L-NE-NAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
.++.++|.+|...|++++|+.+|++++++. + .. ....++.++|.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444444444444331 0 00 1133444444444444444444444444443
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.75 E-value=2.5e-08 Score=66.23 Aligned_cols=63 Identities=27% Similarity=0.289 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSID---S----SHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..++.++|.+|..+|++++|+.+|++++++. + ....++.++|.++...|++++|+.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666665431 1 1133445555555555555555555555544
No 199
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.75 E-value=1.9e-06 Score=74.63 Aligned_cols=201 Identities=15% Similarity=0.050 Sum_probs=131.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------------
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------------------- 185 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------- 185 (341)
+.....+..+...-++.-+++++.+|+.+.+|..|+.-. .....+|+++|+++++....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 335566788899999999999999999999998887632 23467788888887753210
Q ss_pred ------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHH
Q psy16611 186 ------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI-DSSHGL 258 (341)
Q Consensus 186 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 258 (341)
...+...+|.|..+.|+.++|++.++..++..|......++.++..++...+.|.++...+.+.=++ -|..+.
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 0234567888888888888888888888887765434678888888888888888888888875433 245555
Q ss_pred HHHHHHHHHHHh-CC---------------HHHHHHHHHHHHHhCCCchhHHHHHHH------HHHHcCCHHHHHHHHHH
Q psy16611 259 SQNNLAVLEARE-GH---------------IERASTYLQAAAASSPYLYETHYNQAV------ISNLAGDLQESYNIVKK 316 (341)
Q Consensus 259 ~~~~l~~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~------~~~~~g~~~~A~~~~~~ 316 (341)
..+.-+....+. ++ -..|++.+.+|++.+|.-+..+..+-. -+.+.|+ .||+.+---
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~ 410 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFF 410 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHH
Confidence 555544433221 11 134667888888888876654433211 1333444 555555444
Q ss_pred HHhcCCCCHHHH
Q psy16611 317 SLDLHPGHSYSW 328 (341)
Q Consensus 317 al~~~p~~~~~~ 328 (341)
.+..-.+-+.+.
T Consensus 411 hL~hWk~veGAL 422 (539)
T PF04184_consen 411 HLQHWKRVEGAL 422 (539)
T ss_pred HHHHHhcCHhHH
Confidence 444433333333
No 200
>KOG2053|consensus
Probab=98.74 E-value=9.6e-06 Score=74.71 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=114.0
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+...|+.+ -+...-|.++.+.|+.++|..+++..-...+++...+-.+-.+|..++++++|..+|++++..+|. .+
T Consensus 36 lkk~Pn~~---~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee 111 (932)
T KOG2053|consen 36 LKKHPNAL---YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE 111 (932)
T ss_pred HHHCCCcH---HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence 33455544 344444566666666666665555554455555556666666666666666666666666666666 55
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHhcC-CCCH-
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR---------LAIQCLHLALSID-SSHG- 257 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~---------~A~~~~~~al~~~-p~~~- 257 (341)
..+.+-.+|.+.+.|.+=.+.--+..+..|+. ....|..+..++......+ -|...+++.++.. +-..
T Consensus 112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 55555555555555554433333333344444 1223333333333322222 2334444444443 1111
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAA-ASS-PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
.-....-.++..+|++++|...+..-+ +.. +.+...-..-...+...+++.+-.+...+.+...+++
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 111122345567788888888884332 333 3333333445667777888888888888888888887
No 201
>KOG4555|consensus
Probab=98.74 E-value=1e-06 Score=62.08 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHH
Q psy16611 157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAI 234 (341)
Q Consensus 157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~ 234 (341)
-..|......|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|++-+++++++.... ..-.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456666777888888888888888888888888888888888888888888888888875444 23456777788888
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q psy16611 235 GISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 235 ~~g~~~~A~~~~~~al~~~p 254 (341)
.+|+-+.|..-|+.+-++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88888888888877766543
No 202
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=2.6e-06 Score=65.74 Aligned_cols=129 Identities=16% Similarity=0.038 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 231 (341)
.+..++..|..|-..|-+.-|.--|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|.. --+..+.|.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--NYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--hHHHhccce
Confidence 456678889999999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
.++.-|++.-|.+-+.+-...+|+++---..+-.. ...-+..+|...+.+-
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR 192 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQR 192 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHH
Confidence 99999999999999999999999987422222111 2233566666655443
No 203
>KOG2610|consensus
Probab=98.68 E-value=3.8e-06 Score=69.02 Aligned_cols=170 Identities=9% Similarity=-0.007 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-cccc-chHHHHHHHHHHH
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-ALNE-NAADVWYNISHVA 233 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~-~~~~~~~~la~~~ 233 (341)
...-+.+....|++-+|-..+++.++..|.+..++..--..++..|+...-...+++.+.. +++. ....+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556667788888888889999999988888888888888888888888888888776 4333 2244556677788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHcCCHHH
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL----YETHYNQAVISNLAGDLQE 309 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~ 309 (341)
...|-|++|.+..++++++++.+.-+...++.++...|++.++.++..+.-..-... ...|...+.++..-+.|+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 888999999999999999999988888888999999999999988887653321111 0134456778888889999
Q ss_pred HHHHHHHHH--hcCCCCH
Q psy16611 310 SYNIVKKSL--DLHPGHS 325 (341)
Q Consensus 310 A~~~~~~al--~~~p~~~ 325 (341)
|+..|.+-+ ++..++.
T Consensus 266 aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 266 ALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHHHhhccch
Confidence 999888765 4445554
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.67 E-value=1.8e-06 Score=72.31 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16611 155 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADVWYNISHVA 233 (341)
Q Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 233 (341)
+|..+.......+..+.|...|.++++..+....+|...|.+.+. .++.+.|..+|+.+++..|.+ ...|..+...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 445555555555556666666666665444555666666666444 344444666666666666666 66666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
...|+.+.|..+|++++..-+... .+|......-...|+.+......+++.+..|+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 666666666666666666544433 35555555555666666666666666665555
No 205
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.66 E-value=2.1e-06 Score=71.93 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=105.5
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.|+.+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466666777777778889999999886666677888888888666 5666669999999999888888888888888888
Q ss_pred cCChhHHHHHHHHHHhhccccc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 200 SQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
.++.+.|..+|++++..-+... ...+|......-...|+.+...++.+++.+..|.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8999999999999988866652 346788888888888888888888888888887743
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.64 E-value=4.6e-07 Score=67.95 Aligned_cols=103 Identities=17% Similarity=0.014 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHL 248 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (341)
++.|.+.++.....+|.+.+.+++-|..+..+.++...-+ ...-+++|+.-|++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e--------------------------s~~miedAisK~ee 60 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE--------------------------SKKMIEDAISKFEE 60 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH--------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch--------------------------HHHHHHHHHHHHHH
Confidence 4566666666666777777777766666665433211000 00112344444555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCchhHHHHH
Q psy16611 249 ALSIDSSHGLSQNNLAVLEAREGH-----------IERASTYLQAAAASSPYLYETHYNQ 297 (341)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l 297 (341)
++.++|+...+++++|.+|..++. |++|..+|+++...+|++...+..|
T Consensus 61 AL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 61 ALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555555555555555555544322 5666677777777777665544433
No 207
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.63 E-value=4.7e-06 Score=72.25 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=122.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----------------------
Q psy16611 164 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----------------------- 220 (341)
Q Consensus 164 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------------------- 220 (341)
....+.+.-++.-++|++++|+.+.+|..|+.-. ..-..++.++|+++++.....
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 4557788889999999999999999998887642 234567777777776651110
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCchhHHHHH
Q psy16611 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYETHYNQ 297 (341)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 297 (341)
....+...+|.|..+.|+.++|++.+++.++..|. +..+..++..++...+.|.++...+.+.-++. |++....+.-
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 11334577999999999999999999999998775 46689999999999999999999999865442 4555555544
Q ss_pred HHHHHH-cCC---------------HHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 298 AVISNL-AGD---------------LQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 298 ~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
+.+..+ .++ -..|.+.+.+|++.+|.-+.....
T Consensus 337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 444322 121 134778999999999988775433
No 208
>KOG2610|consensus
Probab=98.61 E-value=3.2e-06 Score=69.48 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=132.3
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHcCC
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN---AELFNNLALCCFYSQQ 202 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~ 202 (341)
.+....|++.+|-...++.++..|.+.-++..--..++.+|+.+.-...+++.+.. +++. ..+.-.++..+...|-
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 45667899999999999999999999999888888999999999999999999877 6555 5566778889999999
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
|++|.+.-++++++++.+ ..+...++.++...|++.++.++..+--..-... ..-|...+.++..-+.|+.|++
T Consensus 191 y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999999999999 8899999999999999999999887743221111 2345567888889999999999
Q ss_pred HHHHHH
Q psy16611 279 YLQAAA 284 (341)
Q Consensus 279 ~~~~al 284 (341)
.|.+-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998765
No 209
>KOG1585|consensus
Probab=98.55 E-value=3.2e-05 Score=60.90 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=139.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM------EAIACIGVNHFYNDQPEVALLFYRRLLQMG-----LYNAE 188 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~ 188 (341)
..+..-+..|....+|++|...+.++.+-..++. .++-..+........+.++..+|+++..+. |+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 4555667788889999999999999987655432 334566777778889999999999998763 44443
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSHGL 258 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 258 (341)
.-...+--....-++++|+.+|++++.+-... ...+.+...+.++.....+++|-..+.+-... .++...
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 33344444556788999999999998875443 33566777888999999999988877764332 233344
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASS----PYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
.+.....+|....+|..|..+++...++. +++..+..+|-..| ..|+.++..+.+.-
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 56666677777789999999999977653 44555666766655 46777776665543
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.54 E-value=7.4e-05 Score=62.93 Aligned_cols=167 Identities=12% Similarity=-0.010 Sum_probs=103.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..++.-+....-.|+++.|.+-|+.++.. |+ ..-.+..|-.--...|..+.|+.+-+++....|.-+.++...-...+
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~ 199 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC 199 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 44555566777788888888888887652 32 11112222223346688888888888888888888888877777778
Q ss_pred HcCChhHHHHHHHHHHhhcccc------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16611 199 YSQQYDMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 272 (341)
..|+|+.|+++.+......--. .....+...+.... ..+...|...-.+++++.|+....-..-+..+++.|+
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 8888888888877655432111 01112222222222 2345666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCC
Q psy16611 273 IERASTYLQAAAASSP 288 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p 288 (341)
..++-..++.+.+..|
T Consensus 279 ~rKg~~ilE~aWK~eP 294 (531)
T COG3898 279 LRKGSKILETAWKAEP 294 (531)
T ss_pred hhhhhhHHHHHHhcCC
Confidence 6666666666665554
No 211
>KOG4642|consensus
Probab=98.49 E-value=9.2e-07 Score=69.06 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
..-|+.++....|+.|+.+|.+++.++|.. +..|.+.+.++++..+|+.+..-.++++++.|+....++.+|......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 345667777778888888888888888888 888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHh
Q psy16611 271 GHIERASTYLQAAAAS 286 (341)
Q Consensus 271 g~~~~A~~~~~~al~~ 286 (341)
..|++|+..+.++..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 8888888888888654
No 212
>KOG3617|consensus
Probab=98.47 E-value=2e-05 Score=72.18 Aligned_cols=186 Identities=13% Similarity=0.094 Sum_probs=126.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHH------------HHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYY------------KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA 187 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~------------~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 187 (341)
..|-+++....+..+.+-|.-++ +++.+ +++ +.-...+.+...+|..++|+.+|++.-..+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 34666776666666666555443 33333 222 333455666778899999999999875532
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCC--
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA----------LSIDSS-- 255 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p~-- 255 (341)
.|-..|...|.|++|.++-+.--.++ ....|++.+.-+...++.+.|+++|+++ +..+|.
T Consensus 831 ----LlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 831 ----LLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 55667778888888877765432222 2457788888888888888888888874 222232
Q ss_pred --------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------------CCCchhHHHHHHHHHHHcCC
Q psy16611 256 --------HGLSQNNLAVLEAREGHIERASTYLQAAAAS---------------------SPYLYETHYNQAVISNLAGD 306 (341)
Q Consensus 256 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~~~~l~~~~~~~g~ 306 (341)
+...|...|..+...|+.+.|+.+|..+-.. ...+..+.+.+|..|...|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 3456666777777888888888888776331 23344578889999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy16611 307 LQESYNIVKKSLDL 320 (341)
Q Consensus 307 ~~~A~~~~~~al~~ 320 (341)
..+|+.+|.++...
T Consensus 983 v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887543
No 213
>KOG4642|consensus
Probab=98.47 E-value=1.4e-06 Score=67.98 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 235 (341)
+..-|..++....|..|+.+|.+++.++|..+..|.+-+.++++..+++.+..-.++++++.|+. ...++.+|.++..
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHh
Confidence 34567788888999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHHhc
Q psy16611 236 ISDTRLAIQCLHLALSI 252 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~ 252 (341)
...|++|+..+.++..+
T Consensus 91 s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hccccHHHHHHHHHHHH
Confidence 99999999999999665
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.47 E-value=0.00014 Score=61.29 Aligned_cols=196 Identities=13% Similarity=-0.033 Sum_probs=147.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCC
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDATCME--AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQ 202 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~ 202 (341)
|.+....|+-..|.++-.+.-++-..+.+ ++..-+..-...|+++.|.+-|+.++. +|+. ..-+..|-.-....|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence 45666788889999998887755444444 444556677778999999999998875 3332 2223333344456899
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCHH---HHHHHHHHH-HHhCCHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID---SSHGL---SQNNLAVLE-AREGHIER 275 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~---~~~~l~~~~-~~~g~~~~ 275 (341)
.+.|+.+-+++....|.- ..++...-......|+|+.|+++.+...... ++..+ +-..-+... ....+...
T Consensus 170 reaAr~yAe~Aa~~Ap~l--~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 170 REAARHYAERAAEKAPQL--PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHHhhccCC--chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 999999999999999998 8888888888899999999999988765432 22211 111112221 23356888
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..|.-
T Consensus 248 Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 248 ARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 9999999999999999988889999999999999999999999998854
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.46 E-value=5.7e-07 Score=52.08 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45555666666666666666666666666666665555543
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.41 E-value=0.00015 Score=62.15 Aligned_cols=172 Identities=15% Similarity=0.059 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCChhHHHHHHHHHH-hhccccchH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNLALCCFY---SQQYDMVVTCFERAL-SLALNENAA 223 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~ 223 (341)
.+++..++-..|....+|+.-+++.+..-.. .++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+ +
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--~ 217 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--P 217 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--h
Confidence 4567778888899999999999998887666 55677788889999988 999999999999954 444555 8
Q ss_pred HHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh-------
Q psy16611 224 DVWYNISHVAIGI---------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA-AS------- 286 (341)
Q Consensus 224 ~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~------- 286 (341)
+.+..+|.+|... ...++|+..|.++++.+|+. ..-.|++.++...|...+....+++.. .+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 8999999888442 34789999999999999644 344556666666665333332222221 11
Q ss_pred ----CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 287 ----SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 287 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.-.+......+..+..-.|++++|..++++++.+.|..-.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1112224456778888899999999999999999765433
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.41 E-value=9.1e-07 Score=51.20 Aligned_cols=40 Identities=28% Similarity=0.121 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
++..+|.+|...|++++|+..|+++++.+|++..+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555555544
No 218
>KOG0376|consensus
Probab=98.40 E-value=8.1e-07 Score=76.43 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES 310 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 310 (341)
..++..+.|+.|+..|.++++++|+++..+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.+....+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 311 YNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 311 ~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
...|++...+.|+.+.+...+..+.
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 4444444444444444444444443
No 219
>KOG3617|consensus
Probab=98.37 E-value=0.00014 Score=67.01 Aligned_cols=202 Identities=16% Similarity=0.115 Sum_probs=131.2
Q ss_pred CchhHhhhcHHHHHHHcCCchHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHhcCChHHHHHH
Q psy16611 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLI----------LKRDAT----------CMEAIACIGVNHFYNDQPEVALLF 175 (341)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~ 175 (341)
-.+...+++.+..+...++.+.|+++|+++ +..+|. +...|...|......|+.+.|+.+
T Consensus 855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence 334456677777777788888888888874 333443 344566778888888999999998
Q ss_pred HHHHHHc---------------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------ccccch-HHH--
Q psy16611 176 YRRLLQM---------------------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------ALNENA-ADV-- 225 (341)
Q Consensus 176 ~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~-~~~-- 225 (341)
|..+-.. ...+..+.+.+|..|...|++.+|+..|.++-.. ...+.. ...
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8877432 2344556788999999999999999888776443 222200 111
Q ss_pred ---------HHHHHHHHHhcC-CHHHHHHHHHHH------Hh-----------------cCC-CCHHHHHHHHHHHHHhC
Q psy16611 226 ---------WYNISHVAIGIS-DTRLAIQCLHLA------LS-----------------IDS-SHGLSQNNLAVLEAREG 271 (341)
Q Consensus 226 ---------~~~la~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~l~~~~~~~g 271 (341)
....+..|...| ..+.|+.+|.++ ++ ++| .++..+...+..+....
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 122233444444 556666655542 11 122 35777788888888888
Q ss_pred CHHHHHHHHHHH------HHhC----------------CCc---------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 272 HIERASTYLQAA------AASS----------------PYL---------YETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 272 ~~~~A~~~~~~a------l~~~----------------p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
+|++|...+-.+ +.+. |.. ..++..+|.++.++|.|..|-+-|.++
T Consensus 1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 999988765444 3321 111 126778899999999998888777665
No 220
>KOG0545|consensus
Probab=98.32 E-value=8.7e-06 Score=64.00 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSH----------GLSQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
..++..-|+-++..|+|.+|...|+.|+.. .|.. ...+.|++.++...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455555555666666666665555421 1222 2355666677777777777777777777
Q ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 285 ASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 285 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
...|.+..+++..|.+....=+.++|...|.++++++|.-
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 7777777777777777777777777777777777777654
No 221
>KOG1585|consensus
Probab=98.31 E-value=0.00027 Score=55.89 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAA 223 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~ 223 (341)
...+..-+.+|...+++++|..++.++.+-..++. ..+...+.+......+.++..+|+++..+.-.+ ...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 34466678888899999999999999986554432 345566777777889999999999998874332 114
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----C--CCch
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAAS----S--PYLY 291 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~--p~~~ 291 (341)
..-...+--....-+.++|+.+|++++.+-..+ .+.+...+.++.+..+|.+|-..+.+-... . ++-.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 444444445566789999999999998875333 356677889999999999998888775432 2 2223
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
..+.....++....+|..|..+++...++
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 34555666677778999999999997766
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.26 E-value=1.1e-06 Score=47.44 Aligned_cols=32 Identities=25% Similarity=0.181 Sum_probs=16.9
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESY 311 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 311 (341)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 223
>KOG0545|consensus
Probab=98.25 E-value=3.5e-05 Score=60.68 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhh--------cccc--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSL--------ALNE--------NAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
.++..-|+-++..|+|.+|...|+.++.. .|.. .....+.|+.+|+...|+|-++++...+.++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34667788888888888888888887654 2322 1145678999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16611 252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 293 (341)
Q Consensus 252 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 293 (341)
..|.+..+++..|.+....=+..+|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999876553
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.25 E-value=1.1e-06 Score=47.35 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 225
>KOG2471|consensus
Probab=98.24 E-value=7.5e-06 Score=70.57 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=116.4
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-HHcCCC--------cHHHHHHHHHHH
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL-LQMGLY--------NAELFNNLALCC 197 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~ 197 (341)
..+.+..+...+..-.+.++....+.+.++...+..++..|++.+|.+.+... +...|. ....|+++|.++
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 45567777777877788888877888899999999999999999999887653 222232 233578999999
Q ss_pred HHcCChhHHHHHHHHHHhh---------cccc-------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 198 FYSQQYDMVVTCFERALSL---------ALNE-------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN 261 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~---------~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 261 (341)
+..|.|.-+..+|.++++. .|.. ...++.++.|..|...|+.-.|.++|.++......++..|.
T Consensus 294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999999962 1111 23678899999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy16611 262 NLAVLEARE 270 (341)
Q Consensus 262 ~l~~~~~~~ 270 (341)
.++.+++..
T Consensus 374 RlAEcCima 382 (696)
T KOG2471|consen 374 RLAECCIMA 382 (696)
T ss_pred HHHHHHHHH
Confidence 999887543
No 226
>KOG1586|consensus
Probab=98.23 E-value=0.0014 Score=51.64 Aligned_cols=168 Identities=11% Similarity=0.056 Sum_probs=114.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH------HHHH
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRD----A--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE------LFNN 192 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~ 192 (341)
-+..|....++..|-..|.++-+.. . +....+...+.+|. ..+.++|..++++++++.-+... .+..
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ 118 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIE 118 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Confidence 3445555555555555555543321 1 12334445555554 45899999999999887655433 3457
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HH
Q psy16611 193 LALCCFYS-QQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL-------SQ 260 (341)
Q Consensus 193 la~~~~~~-~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~ 260 (341)
+|.+|..- .++++|+.+|+++-+..... ..-..+...+..-...++|.+|+..|++.....-++.. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 88888775 89999999999998875443 11234556666777889999999999998876655532 33
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAASSPYLYET 293 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 293 (341)
+.-|.++.-..+.-.+...+++..+++|...+.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 445667777788888889999999999987653
No 227
>KOG0530|consensus
Probab=98.21 E-value=0.00011 Score=58.56 Aligned_cols=173 Identities=10% Similarity=0.024 Sum_probs=92.1
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh-HH
Q psy16611 129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD-MV 206 (341)
Q Consensus 129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A 206 (341)
+.+......|+.+-..++..+|.+-.+|...-.++..+ .+..+-++++.+.++.+|.+..+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 33444555566666666666666555555544444433 24555556666666666666666655555555555555 55
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hC-----CHHHHHHHH
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EG-----HIERASTYL 280 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g-----~~~~A~~~~ 280 (341)
++..+.++..+.++ ..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+.
T Consensus 133 Lef~~~~l~~DaKN--YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKN--YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred HHHHHHHHhccccc--hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 55566666555555 55565555555555556666666666665554444444432222211 11 122333444
Q ss_pred HHHHHhCCCchhHHHHHHHHHHH
Q psy16611 281 QAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 281 ~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
.+.+.+.|++..+|..|.-++..
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHh
Confidence 55555556666666555555443
No 228
>KOG2471|consensus
Probab=98.21 E-value=1.4e-05 Score=68.91 Aligned_cols=147 Identities=8% Similarity=-0.102 Sum_probs=116.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH-Hhhccc------cchHHHHHHHH
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA-LSLALN------ENAADVWYNIS 230 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~------~~~~~~~~~la 230 (341)
.....|.+..+...+..-.+.+.....+.+......++.++..|++.+|.+.+... +...+. -..-.+|+++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 44445566666777777777777777788889999999999999999999887654 222222 11234679999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-c--------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 231 HVAIGISDTRLAIQCLHLALS-I--------DS---------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
.+++..|.|.-+..+|.++++ . .| ...+++++.|..|...|+.-.|.++|.++......++.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 999999999999999999995 1 11 23568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q psy16611 293 THYNQAVISNLA 304 (341)
Q Consensus 293 ~~~~l~~~~~~~ 304 (341)
.|..++.|+...
T Consensus 371 lWLRlAEcCima 382 (696)
T KOG2471|consen 371 LWLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.20 E-value=0.00043 Score=59.39 Aligned_cols=170 Identities=11% Similarity=-0.006 Sum_probs=122.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHh----CCCCHHHHHHHHHHHHh---cCChHHHHHHHHH-HHHcCCCcHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR----DATCMEAIACIGVNHFY---NDQPEVALLFYRR-LLQMGLYNAELFN 191 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~ 191 (341)
...+++-..|....+|+.-+.+.+..-.. -++...+.+.+|.++.. .|+.++|+..+.. .....+.+++.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 44556667888999999999999887665 45567778888888888 8999999999999 5556778899999
Q ss_pred HHHHHHHH---------cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hc--
Q psy16611 192 NLALCCFY---------SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL--------SI-- 252 (341)
Q Consensus 192 ~la~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 252 (341)
.+|.+|-. ....++|+..|.++.+.+|+. ..=.|++.++...|.-.+...-+++.. +.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 99988754 234789999999999999664 333455555555554332222222211 11
Q ss_pred --CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 253 --DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 253 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
.-.+...+-.+..+..-.|++++|++.+++++.+.|....
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1223344456777888899999999999999998776543
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.00059 Score=55.74 Aligned_cols=161 Identities=16% Similarity=-0.030 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
.+.-+.-+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-...... ...........
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence 34455566667788999999999999999999999999999999999999999888877643322222 01111111122
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHH
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYETHYNQAVISNLAGDLQES 310 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 310 (341)
+.+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..+..+.. +..+...+..++...|..+.+
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 2222222222 2345667779999999999999999999999999999888877643 344566666666665544444
Q ss_pred HHHHH
Q psy16611 311 YNIVK 315 (341)
Q Consensus 311 ~~~~~ 315 (341)
...++
T Consensus 292 ~~~~R 296 (304)
T COG3118 292 VLAYR 296 (304)
T ss_pred HHHHH
Confidence 33333
No 231
>KOG4507|consensus
Probab=98.19 E-value=1.8e-05 Score=69.83 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=89.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHG-LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 312 (341)
...|+...|++++..++...|... ....+++.+....|-.-+|-..+.+++.+....+-.++.+|..+..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 346899999999999999888654 3577899999999999999999999999997778899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH
Q psy16611 313 IVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 313 ~~~~al~~~p~~~~~~~~l~~~ 334 (341)
.|+++++++|+++....-+..+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999998877665544
No 232
>KOG0376|consensus
Probab=98.19 E-value=2.8e-06 Score=73.22 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=73.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS 237 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 237 (341)
.-+...+.-++++.|+..|.++++++|+++..+-+.+..+...+++..|+.-+.++++.+|.. ..+|+..|.+.+..+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHH
Confidence 344555566667777777777777777777777677777777777777777777777777766 677777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 238 DTRLAIQCLHLALSIDSSHGLSQNNLAVL 266 (341)
Q Consensus 238 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 266 (341)
++.+|...|+....+.|+++.+...+-.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77777777777777777776665555444
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.18 E-value=0.00053 Score=61.81 Aligned_cols=155 Identities=16% Similarity=0.101 Sum_probs=115.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCc-HHH-----HHHHH-HHHH----HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16611 165 YNDQPEVALLFYRRLLQMGLYN-AEL-----FNNLA-LCCF----YSQQYDMVVTCFERALSLALNENAADVWYNISHVA 233 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al~~~p~~-~~~-----~~~la-~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 233 (341)
-.||-+.++..+.++.+...-. +.+ .+... ..+. .....+.|.+++.......|+. .-..+..|.++
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--ALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 3589999999999987733211 111 11111 1111 2346778999999999999998 88899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCH-
Q psy16611 234 IGISDTRLAIQCLHLALSIDSS----HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDL- 307 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~- 307 (341)
...|+.++|++.|++++..... ..-.++.++.++..+++|++|..+|.+..+.+.-+. ...+..|.|+...|+.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence 9999999999999998854322 234678899999999999999999999988654322 2445678888899988
Q ss_pred ------HHHHHHHHHHHhcC
Q psy16611 308 ------QESYNIVKKSLDLH 321 (341)
Q Consensus 308 ------~~A~~~~~~al~~~ 321 (341)
++|..+|.++-.+.
T Consensus 358 ~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 88888888876553
No 234
>KOG2053|consensus
Probab=98.16 E-value=0.00011 Score=68.03 Aligned_cols=139 Identities=14% Similarity=-0.060 Sum_probs=97.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16611 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (341)
..+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++ ...+..+-.+|..++++++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D--~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD--DLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc--hHHHHHHHHHHHHHhhhhHHHH
Confidence 45677888888888888888888877778888888888888887777666666666 6777777888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHcCC
Q psy16611 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-THYNQAVISNLAGD 306 (341)
Q Consensus 245 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~ 306 (341)
+|++++..+|. .+.+..+=.+|.+.+.|.+-.+.--+..+..|+++. .|.-+..++.....
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence 88888888887 666666667777777776644444444445666554 33334444433333
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.16 E-value=0.00022 Score=64.29 Aligned_cols=156 Identities=11% Similarity=-0.037 Sum_probs=119.0
Q ss_pred HcCCchHHHHHHHHHHHhCCCC-HHH-----HHHHHH-HHH----hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 131 GLNNMPMSVKYYKLILKRDATC-MEA-----IACIGV-NHF----YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~-~~~-----~~~la~-~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
-.||-+.++..+.++.+...-. +-+ .+.... .+. ...+.+.|.+.++...+..|+.....+..|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3689999999999987732211 111 111111 111 24567889999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCH---
Q psy16611 200 SQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHI--- 273 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~--- 273 (341)
.|+.++|++.|++++...... ...-.++.++.++..+++|++|..++.+..+.+.-. ....+..|.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988543222 234568899999999999999999999999876443 34456678888999999
Q ss_pred ----HHHHHHHHHHHHh
Q psy16611 274 ----ERASTYLQAAAAS 286 (341)
Q Consensus 274 ----~~A~~~~~~al~~ 286 (341)
++|.+.|.++-..
T Consensus 360 ~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 8888888887543
No 236
>KOG2300|consensus
Probab=98.13 E-value=0.0011 Score=57.64 Aligned_cols=203 Identities=15% Similarity=0.061 Sum_probs=143.8
Q ss_pred HcCCchHHHHHHHHHHHhCCC------CHH--------HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC-------c
Q psy16611 131 GLNNMPMSVKYYKLILKRDAT------CME--------AIACIGVNHFYNDQPEVALLFYRRLLQM---GLY-------N 186 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~------~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~ 186 (341)
..|-++++.++-++++..... ... .+-.+..+-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 467778888888877754211 111 2335666777889999999988877664 333 3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--------- 256 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------- 256 (341)
+.+++.+|......+.++.|...|..+.+..... .......++|.+|...|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 4567888888888999999999999999875443 3355667899999998876554444443 34442
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHH
Q psy16611 257 -GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKSLDL---HPGHSY 326 (341)
Q Consensus 257 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 326 (341)
..+++..|...+.++++.+|...+.+.+++.... .-.+..|+.+..-.|+..++.+...-++++ -||.+.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 3567788888899999999999999999876211 114566888889999999998888777765 456555
Q ss_pred HHHHHHHHHH
Q psy16611 327 SWDILRKLEQ 336 (341)
Q Consensus 327 ~~~~l~~~~~ 336 (341)
-....+-+..
T Consensus 524 qLws~si~~~ 533 (629)
T KOG2300|consen 524 QLWSSSILTD 533 (629)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 237
>KOG0551|consensus
Probab=98.10 E-value=6.5e-05 Score=61.86 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHHHc----CCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCH
Q psy16611 167 DQPEVALLFYRRLLQM----GLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDT 239 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~ 239 (341)
|+...-...++..... .|+ .+.-+..-|+-|+..++|..|+..|.+.|+..-.+ .....|.+.+.+....|+|
T Consensus 56 gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny 135 (390)
T KOG0551|consen 56 GDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY 135 (390)
T ss_pred CCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH
Confidence 6655555555544332 121 34557778999999999999999999999886554 4567889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 240 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
..|+.-+.+++.++|.+..+++.-+.++..+.++.+|..+++..+.++..
T Consensus 136 Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 136 RSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999999999999999999999999999998876544
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.10 E-value=9.3e-06 Score=43.94 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555555555555543
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=9.9e-06 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=8.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 297 QAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+|.++..+|++++|+.+|++++++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHH
Confidence 333333333333333333333333
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=7.1e-06 Score=44.44 Aligned_cols=34 Identities=26% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.08 E-value=0.00027 Score=53.08 Aligned_cols=113 Identities=19% Similarity=0.037 Sum_probs=71.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 273 (341)
|......++...++..+++++.+...+.....-. ..-.......+++.. ..+...++..+...|++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCH
Confidence 4444556677777777777777654430000000 011111222222221 34566778888899999
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
++|+..+++++..+|.+..++..+..+|...|+..+|+..|++....
T Consensus 79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887543
No 242
>KOG0551|consensus
Probab=98.07 E-value=0.00016 Score=59.57 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (341)
+..+-.-|+-|++.++|..|+..|.+.++..-.+ +..|.+.+-+.+..|+|..|+.-+.+++.++|.+ ..+++.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhh
Confidence 4556678999999999999999999999875443 4568899999999999999999999999999999 999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
=+.|++.+.++++|..++++.+.++
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999986554
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00041 Score=56.59 Aligned_cols=152 Identities=14% Similarity=0.027 Sum_probs=107.2
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHc
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF-NNLALCCFYS 200 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~ 200 (341)
.+.-+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-.........- ...-..+.+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 334456778899999999999999999999999999999999999999999888776433222221111 1111233333
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCHHHH
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS--SHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A 276 (341)
....+. ..+++.+..+|++ ..+.+.++..+...|+.++|.+.+-..++.+. .+..+...+-.++...|.-+.+
T Consensus 217 a~~~~~-~~l~~~~aadPdd--~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 217 AATPEI-QDLQRRLAADPDD--VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred hcCCCH-HHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 333332 2355566779999 99999999999999999999999999888763 3344555555555555533333
No 244
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=98.06 E-value=0.0055 Score=51.93 Aligned_cols=187 Identities=18% Similarity=0.133 Sum_probs=139.0
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----c
Q psy16611 129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----S 200 (341)
Q Consensus 129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 200 (341)
....+++..+...+..+-.. .+......++.+|... .+..+|..+|+.+. ....+...+.||.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence 34567788888888887652 2346777888888753 46788999999544 45567788889999887 4
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-------DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR---- 269 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---- 269 (341)
.++.+|..+|+++....-... ....+.++.+|..-. +...|+..|.++-... +..+.+.+|.+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 589999999999988743320 133777777776541 2347888888887765 67888889988855
Q ss_pred hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCCCH
Q psy16611 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG---------------DLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~al~~~p~~~ 325 (341)
..++++|..+|.++.+... ...++.++ ++...| +...|..++.++....+...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 3488999999999998766 77888888 777666 88888999998887766543
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.04 E-value=1.7e-05 Score=42.90 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
+++.+|.++...|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 246
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.99 E-value=0.00094 Score=57.89 Aligned_cols=171 Identities=11% Similarity=-0.043 Sum_probs=107.2
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHH
Q psy16611 146 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAAD 224 (341)
Q Consensus 146 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 224 (341)
+..+|-+.+.+..++.++..+|+.+.|.++.++++-.........+..-..-...|.- .--| ..+.+ ....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~~-----~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLDY-----RRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccCC-----ccccchHHHH
Confidence 4567777777778888888888888887777777632111100000000000000000 0000 01222 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCC-----CchhHHHHH
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLE-AREGHIERASTYLQAAAASSP-----YLYETHYNQ 297 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l 297 (341)
+.+.....+.+.|-+.-|.++.+-.+.++|. |+.........| .+.++|+--+..++....... .-+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 6677778888999999999999999999998 766554444444 677888877777777655211 123466778
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhcCCCC
Q psy16611 298 AVISNLAGDL---------------QESYNIVKKSLDLHPGH 324 (341)
Q Consensus 298 ~~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 324 (341)
+.++...++. ++|...+.+|+...|.-
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 8888888888 89999999999888853
No 247
>KOG0530|consensus
Probab=97.97 E-value=0.0019 Score=51.77 Aligned_cols=218 Identities=10% Similarity=0.064 Sum_probs=149.9
Q ss_pred chHhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHH
Q psy16611 77 TLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAI 156 (341)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 156 (341)
++.+...-+|........+ .|.+++-..++.-+|.+-.+..-+.. .+-....+..+-++++.++++.+|.+-.+|
T Consensus 41 ~fr~~m~YfRAI~~~~E~S---~RAl~LT~d~i~lNpAnYTVW~yRr~--iL~~l~~dL~~El~~l~eI~e~npKNYQvW 115 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKS---PRALQLTEDAIRLNPANYTVWQYRRV--ILRHLMSDLNKELEYLDEIIEDNPKNYQVW 115 (318)
T ss_pred hHHHHHHHHHHHHhccccC---HHHHHHHHHHHHhCcccchHHHHHHH--HHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence 4566666677744444433 37788877888888888755433333 233334567788888999999999999999
Q ss_pred HHHHHHHHhcCChH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16611 157 ACIGVNHFYNDQPE-VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235 (341)
Q Consensus 157 ~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 235 (341)
...-.+....|++. .-+++.+.++..+..+..+|...-.+....+.|+.-+.+..+.++.+-.+ -.+|+..-.+...
T Consensus 116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N--NSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN--NSAWNQRYFVITN 193 (318)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cchhheeeEEEEe
Confidence 88888888888877 77888888998888888888888888888888999999999988887766 5666554333322
Q ss_pred -cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH-HhCCCchhHHHHHHHHH
Q psy16611 236 -IS-----DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EG--HIERASTYLQAAA-ASSPYLYETHYNQAVIS 301 (341)
Q Consensus 236 -~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~ 301 (341)
.| ..+.-+.+..+.+.+.|++..+|..|..++.. .| .+.+........+ .....++..+..+...|
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 22 23344567778888889999999888887765 33 2334444444433 22333444555555555
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.0014 Score=50.19 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
-..++..+...|++++|+..++.++....+. ..+-.+++.+...+|++++|+..+.....-+= ....-...|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence 3455556666666666666666655433222 23345566666666666666666554322100 0112334566666
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q psy16611 303 LAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~p~ 323 (341)
..|+.++|+..|+++++..++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 666666666666666666533
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.94 E-value=0.00042 Score=52.02 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH-HHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16611 157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV-TCFERALSLALNENAADVWYNISHVAIG 235 (341)
Q Consensus 157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~la~~~~~ 235 (341)
...|......++.+.++..+++++.+.......-.. ...|-... ..++.. . ..+...++..+..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~--~~~~~~l~~~~~~ 74 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------Y--LDALERLAEALLE 74 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------H--HHHHHHHHHHHHh
Confidence 334556667789999999999999875432110000 01222111 122221 2 5677788888899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
.|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|++...
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988754
No 250
>KOG2300|consensus
Probab=97.93 E-value=0.0028 Score=55.19 Aligned_cols=188 Identities=11% Similarity=-0.009 Sum_probs=135.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c--HHHHH
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKR---DAT-------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-N--AELFN 191 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~ 191 (341)
...+-.-.|++.+|++-...+.+. .|. .+..++.+|......+.++.|...|..+.+.-.. + ..+..
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345556789999999888777654 343 3566788898888999999999999999886543 2 34567
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcccc--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CH
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNE--------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------HG 257 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 257 (341)
++|..|...++-+.-.+.++.. .|.+ ....+++..|...+.++++.+|...+.+.++.... .+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 8899999988766555555443 4432 33567788888899999999999999999987621 13
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---Cchh---HHHHHHHHHHHcCC--HHHHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSP---YLYE---THYNQAVISNLAGD--LQESYNIVK 315 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~l~~~~~~~g~--~~~A~~~~~ 315 (341)
..+..++.+....|+..++.....-++.+.. +.+. ...-+-.++...|+ .+...+.|.
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3556788889999999999999988887654 3333 22345566777777 444444443
No 251
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.91 E-value=0.0021 Score=55.09 Aligned_cols=146 Identities=13% Similarity=-0.030 Sum_probs=104.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 140 KYYKLILKRDATCMEAIACIGVNHFYNDQ------------PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
.-|++.++.+|.+.+.|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677788888888888877765544322 356677888888888888888888777777888888888
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHH
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIG---ISDTRLAIQCLHLALSIDSS------------------HGLSQNNLAVL 266 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~ 266 (341)
+-+++++..+|.+ ..+|..+-..... .-.++.....|.+++..-.. ...+...+...
T Consensus 86 ~~we~~l~~~~~~--~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 86 KKWEELLFKNPGS--PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHCCCC--hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8888888888888 7777665544433 34567777777777653110 12345566677
Q ss_pred HHHhCCHHHHHHHHHHHHHhC
Q psy16611 267 EAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~~~ 287 (341)
..+.|..+.|+..++..++++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 778888888888888888865
No 252
>KOG1258|consensus
Probab=97.86 E-value=0.019 Score=51.57 Aligned_cols=217 Identities=14% Similarity=0.051 Sum_probs=137.9
Q ss_pred CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCc---HHH
Q psy16611 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV-NHFYNDQPEVALLFYRRLLQMGLYN---AEL 189 (341)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 189 (341)
.-|....-|...+..-.+.|..+.+++.|++++..-|...+.|..+-. +-...|+.+.-...|++|......+ ...
T Consensus 74 kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~l 153 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPL 153 (577)
T ss_pred hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHH
Confidence 345555778888889999999999999999999998887777765433 3335566666667777776653222 112
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhh-----------------------------------------------------
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSL----------------------------------------------------- 216 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~----------------------------------------------------- 216 (341)
|-.+-..-..++++..-..+|++.++.
T Consensus 154 Wdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~ 233 (577)
T KOG1258|consen 154 WDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL 233 (577)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence 222222222233333333333333322
Q ss_pred --------------------------------------------------------cccc-chHHHHHHHHHHHHhcCCH
Q psy16611 217 --------------------------------------------------------ALNE-NAADVWYNISHVAIGISDT 239 (341)
Q Consensus 217 --------------------------------------------------------~~~~-~~~~~~~~la~~~~~~g~~ 239 (341)
.|.. .....|..........|++
T Consensus 234 ~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 234 EIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred HHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 1111 1133444455555566777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 240 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
+...-.|++++--.......|...+......|+.+-|...+..+.++. ++.+.++..-+.+....|++..|...+++..
T Consensus 314 ~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 314 SRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 777777777776666667777777777777788877777777777764 5555667777777777888888888888888
Q ss_pred hcCCCCHHHHHH
Q psy16611 319 DLHPGHSYSWDI 330 (341)
Q Consensus 319 ~~~p~~~~~~~~ 330 (341)
+-.|+...+-..
T Consensus 394 ~e~pg~v~~~l~ 405 (577)
T KOG1258|consen 394 SEYPGLVEVVLR 405 (577)
T ss_pred hhCCchhhhHHH
Confidence 777777554433
No 253
>KOG1550|consensus
Probab=97.81 E-value=0.0052 Score=56.82 Aligned_cols=174 Identities=19% Similarity=0.207 Sum_probs=128.6
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHcC
Q psy16611 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-----DQPEVALLFYRRLLQ-------MGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~~ 201 (341)
+...+..+++.+.+.. +..+.+.+|.+|..- .+.+.|+.+|+.+.. .. .+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCC
Confidence 3567888888876654 678888888888754 689999999999977 33 4557788999998843
Q ss_pred -----ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16611 202 -----QYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR---- 269 (341)
Q Consensus 202 -----~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---- 269 (341)
++..|..+|.++-... + +.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.+|..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--N--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGV 376 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--C--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCc
Confidence 6788999999998774 4 678899999987655 678999999999765 456788888888754
Q ss_pred hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q psy16611 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLA-GDLQESYNIVKKSLD 319 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 319 (341)
.-+...|..+++++.+.. ++.+.+.++.++..- +.++.+...+....+
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 357899999999999887 344455555554332 666655555444433
No 254
>KOG1914|consensus
Probab=97.79 E-value=0.0085 Score=53.07 Aligned_cols=179 Identities=12% Similarity=-0.037 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcC---C
Q psy16611 141 YYKLILKRDATCMEAIACIGVNHFYNDQ--------------PEVALLFYRRLLQMGL-YNAELFNNLALCCFYSQ---Q 202 (341)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~---~ 202 (341)
.+++++..-+-++++|+..+..+...++ -+++..+|++++...- .+...++.++..-...- +
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 3455555555555665554444444333 4555555555554321 12222222222211111 2
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCHHHHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERASTYLQ 281 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~ 281 (341)
++....++++++.+...+ ..-+|..+-+.-.+..-...|...|.++-+.......++..-|.+ |.-.++.+-|...|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 444444555554442222 012333333333333444455555555544332222222222222 233445555555555
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 282 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
-.+...++.+..-......+...++-..+..+|++++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 555555555554444555555555555555555555543
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.79 E-value=0.013 Score=51.13 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCC--------
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDS----SHGLSQNNLAVLEAREGHIERASTYLQAAAAS-SPY-------- 289 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~-------- 289 (341)
...|...+.+..+.|+++.|...+.++...++ ..+.+.+..+..+...|+..+|+..++..+.. ...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 66777788888888888888888877776542 14566667777778888888888877777661 100
Q ss_pred -------------------------chhHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 290 -------------------------LYETHYNQAVISNLA------GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 290 -------------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
...++..+|...... +..+++...|+++.++.|+...+|+.++.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 012455566666666 777888888888888888888888777666543
No 256
>KOG1308|consensus
Probab=97.78 E-value=2.7e-05 Score=64.38 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=67.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCH
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDT 239 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 239 (341)
+.-....|.++.|++.|..++.++|.....+...+.++..+++...|+.-|..++.++|+. ..-+-..+.....+|+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHhhch
Confidence 3344456777777777777777777777777777777777777777777777777777777 66666677777777777
Q ss_pred HHHHHHHHHHHhcC
Q psy16611 240 RLAIQCLHLALSID 253 (341)
Q Consensus 240 ~~A~~~~~~al~~~ 253 (341)
.+|...+..+.+++
T Consensus 199 e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 199 EEAAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777777777665
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.01 Score=45.59 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (341)
...++..+...+++++|+..++.++....+. ....+-..++.+...+|.+++|+..+...-... -.+..-...|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 4567888999999999999999999775554 456677899999999999999999887653321 12334566899999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCc
Q psy16611 269 REGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 269 ~~g~~~~A~~~~~~al~~~p~~ 290 (341)
..|+-++|+..|+++++..++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999987543
No 258
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.75 E-value=0.0052 Score=52.67 Aligned_cols=146 Identities=8% Similarity=-0.030 Sum_probs=116.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH
Q psy16611 174 LFYRRLLQMGLYNAELFNNLALCCFYSQQ------------YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241 (341)
Q Consensus 174 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 241 (341)
.-|.+.++.+|.+...|..+....-..-. .+.-+.+|++|++.+|++ ..++..+-.+..+..+.++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHH
Confidence 45778889999999999988866544322 456688999999999999 8888888888888889999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCC----C--------------chhHHHHHHHH
Q psy16611 242 AIQCLHLALSIDSSHGLSQNNLAVLEAR---EGHIERASTYLQAAAASSP----Y--------------LYETHYNQAVI 300 (341)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p----~--------------~~~~~~~l~~~ 300 (341)
..+.+++++..+|++...|..+-..... .-.+.+....|.+++..-. . ...+...+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988776555433 3357788888888876311 0 11256678888
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q psy16611 301 SNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~ 321 (341)
+.+.|..+.|+..++-.++++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 999999999999999999885
No 259
>KOG1258|consensus
Probab=97.71 E-value=0.022 Score=51.28 Aligned_cols=204 Identities=12% Similarity=-0.019 Sum_probs=148.9
Q ss_pred HcCCchHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16611 131 GLNNMPMSVKYYKLILKR-----DA---TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 202 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~-----~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 202 (341)
......+.+-.++..++. .| .+...|..........|+++.....|++++--.....+.|...+......|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 334444455555555543 12 2345566777777788999999999999998888888999999999999999
Q ss_pred hhHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH---
Q psy16611 203 YDMVVTCFERALSLA-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST--- 278 (341)
Q Consensus 203 ~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--- 278 (341)
.+-|...+.++.+.. +.. +.+...-+......|++..|...++......|....+-........+.|+.+.+..
T Consensus 347 ~~~~~~~~~~~~~i~~k~~--~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKT--PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCC--cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 999998888888775 444 66777777788888999999999999998888888887778888888999988884
Q ss_pred HHHHHHHhCCCc---hhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 279 YLQAAAASSPYL---YETHYNQAVI-SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 279 ~~~~al~~~p~~---~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
.+.....-..+. ...+...+.. +.-.++.+.|...+.++++..|++...+..+..+..
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 332222211111 1233344443 444678899999999999999999877766665543
No 260
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.69 E-value=0.023 Score=48.11 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=119.6
Q ss_pred HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCc-HHHH
Q psy16611 120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYN-AELF 190 (341)
Q Consensus 120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~ 190 (341)
.....++..|.. ..+..+|..+|..+. ...++.+.+.+|.+|.. ..+..+|..+|+++....... ....
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 345555555543 345778999999554 34578899999999987 458999999999999986555 4557
Q ss_pred HHHHHHHHHcC-------ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 191 NNLALCCFYSQ-------QYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLS 259 (341)
Q Consensus 191 ~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 259 (341)
+.++.+|..-. +...|...|.++-... + ..+.+.+|.+|.. ..++.+|..+|.++-+... ...
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~--~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a 225 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N--PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAA 225 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C--HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHH
Confidence 88888887642 2337888898887775 4 7889999988855 3589999999999998876 788
Q ss_pred HHHHHHHHHHhC---------------CHHHHHHHHHHHHHhCCC
Q psy16611 260 QNNLAVLEAREG---------------HIERASTYLQAAAASSPY 289 (341)
Q Consensus 260 ~~~l~~~~~~~g---------------~~~~A~~~~~~al~~~p~ 289 (341)
.+.++ ++...| +...|...+..+....+.
T Consensus 226 ~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 226 CYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 88888 666666 666667777666655443
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.69 E-value=8.4e-05 Score=40.09 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555555
No 262
>KOG1308|consensus
Probab=97.67 E-value=5e-05 Score=62.81 Aligned_cols=95 Identities=8% Similarity=0.004 Sum_probs=88.6
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 205 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 205 (341)
+.-.+..|.+++|++.|..++.++|.....+...+.++..+++...|+.-+..++.++|+...-|-..+.....+|+|.+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q psy16611 206 VVTCFERALSLALNE 220 (341)
Q Consensus 206 A~~~~~~al~~~~~~ 220 (341)
|...+..+.+++-+.
T Consensus 201 aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 201 AAHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHHhccccH
Confidence 999999999987553
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.66 E-value=0.009 Score=52.06 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-C---
Q psy16611 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSI-DS-S--- 255 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~--- 255 (341)
.......|...+.+....|+++.|...+.++....+.. ..+.+.+..+.++...|+..+|+..++..++. .. .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 44556778889999999999999999999988765332 13678888899999999999999988888771 10 0
Q ss_pred -----------------------------CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 256 -----------------------------HGLSQNNLAVLEARE------GHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 256 -----------------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
.+.++..+|...... +..++++..|+++++.+|....+|+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 134566677777777 889999999999999999999999999888
Q ss_pred HHHcCC-----------------HHHHHHHHHHHHhcCCC
Q psy16611 301 SNLAGD-----------------LQESYNIVKKSLDLHPG 323 (341)
Q Consensus 301 ~~~~g~-----------------~~~A~~~~~~al~~~p~ 323 (341)
+...-+ ...|+..|-+++...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 765421 13488889999998887
No 264
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.65 E-value=0.023 Score=53.43 Aligned_cols=200 Identities=13% Similarity=-0.014 Sum_probs=135.3
Q ss_pred hcHHHHHHHcCCchHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HH
Q psy16611 123 LNLAKIFEGLNNMPMSVKYYKLILKRDAT---------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AE 188 (341)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~ 188 (341)
+..+.......++.+|..++.++...-+. ..+..-..|.+....|++++|+++.+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 33456777889999999999888765443 12334467788889999999999999999887764 34
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCH--HHHHHHHHHHHh----cCCCCHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDT--RLAIQCLHLALS----IDSSHGL 258 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~----~~p~~~~ 258 (341)
++..+|.+..-.|++++|..+.+++.+..... ....+....+.++..+|+. .+....|...-. ..|.+.-
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 67788999999999999999999998874333 1233445567888888933 333333333222 2344333
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASS----PYLYE---THYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
.....+.++...-+++.+.......++.. |.... +...|+.++...|+.++|...+.....+.-
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 34444444444444666666666655542 22222 335799999999999999999998886643
No 265
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.63 E-value=0.00047 Score=41.14 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
+.++.++..+.+.|+|++|..+.+.+++..|+|..+......+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888887777776554
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.61 E-value=0.00015 Score=39.11 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555544
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.56 E-value=0.012 Score=51.15 Aligned_cols=177 Identities=11% Similarity=-0.052 Sum_probs=94.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----
Q psy16611 141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL---- 216 (341)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 216 (341)
.+++++...+-.+++|+.........++-++|+...++++...|. ..+.++.+|...++-+....+|+++.+-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 455666666666777777777777777777777777776666554 4555666666555555555555544332
Q ss_pred --------------cccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhC
Q psy16611 217 --------------ALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREG 271 (341)
Q Consensus 217 --------------~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g 271 (341)
++.. ....+|..+-..-.+..-.+.|...|-++-+..-...+++..-|.+ +...|
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence 1100 0011122222222333345555566666554432222333222222 34456
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
++.-|...|+-.+...|+++......-..+...++-..|..+|++++..
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 6666666666666666666555555555556666666666666655543
No 268
>KOG4507|consensus
Probab=97.54 E-value=0.00037 Score=61.87 Aligned_cols=93 Identities=23% Similarity=0.151 Sum_probs=43.3
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|+...|+.++..++...|.. ......++++++...|-...|-.++.+++.+....+..++.+|.++..+.+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 444444555544444444433 0122344444444444444444444444444444444444444444444455555555
Q ss_pred HHHHHHhCCCchhH
Q psy16611 280 LQAAAASSPYLYET 293 (341)
Q Consensus 280 ~~~al~~~p~~~~~ 293 (341)
|+++++..|+++..
T Consensus 699 ~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 699 FRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHhcCCCChhh
Confidence 55555444444443
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.53 E-value=0.011 Score=51.44 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=30.3
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILK 147 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 147 (341)
+...|.+. .+.+.++.++..+|++..|.+++++++-
T Consensus 33 l~~~PyHi---dtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 33 LQKNPYHI---DTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555 8899999999999999999999999964
No 270
>KOG1914|consensus
Probab=97.51 E-value=0.046 Score=48.70 Aligned_cols=186 Identities=11% Similarity=0.025 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHH
Q psy16611 135 MPMSVKYYKLILKRDA-TCMEAIACIGVNHFYND---QPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDMVVTC 209 (341)
Q Consensus 135 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~ 209 (341)
.+++..+|++++...- .+...++.++..-...- +++..-..+++++.....+ ..+|..+-+...+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 5567777777766432 23334444444333322 3677778888888764443 34566666677777778889999
Q ss_pred HHHHHhhccccchHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Q psy16611 210 FERALSLALNENAADVWYNISH-VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS-- 286 (341)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 286 (341)
|.++-+..-.. ..++..-|. -|...++..-|...|+-.++..++.+..-......+...++-..+...|++++..
T Consensus 389 F~kaR~~~r~~--hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTR--HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCc--chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99987765443 344444333 3456899999999999999999999999999999999999999999999999987
Q ss_pred CCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 287 SPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 287 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
.++ ...+|..+...-..-|+....++.-++-....|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 332 346898898889999999998888877776666
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.48 E-value=0.02 Score=42.79 Aligned_cols=83 Identities=16% Similarity=0.025 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 304 (341)
.+..+..+-...++.+++...+....-+.|..+..-..-|.++...|++.+|+..|+.+.+..|..+.+.-.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCH
Q psy16611 305 GDL 307 (341)
Q Consensus 305 g~~ 307 (341)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 554
No 272
>KOG1550|consensus
Probab=97.46 E-value=0.019 Score=53.13 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----CChhHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHhcC-
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----QQYDMVVTCFERALSL-----ALNENAADVWYNISHVAIGIS- 237 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~-----~~~~~~~~~~~~la~~~~~~g- 237 (341)
...|..+++.+.... +......+|.+|..- .+.+.|+.+|+.+... .... +.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~--~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL--PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC--CccccHHHHHHhcCCC
Confidence 567888888887654 566777888888764 6899999999999771 1113 567889999998743
Q ss_pred ----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc----CC
Q psy16611 238 ----DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERASTYLQAAAASSPYLYETHYNQAVISNLA----GD 306 (341)
Q Consensus 238 ----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~ 306 (341)
++..|+.+|.++-... ++.+.+.+|.++..-. ++..|.++|..+... .+..+.++++.+|..- -+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 7788999999998765 4667788888886655 678999999999765 4677889999988753 47
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 307 LQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 307 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
...|..+++++-+.. ++.+...+..+.
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 899999999999988 444455554443
No 273
>PRK10941 hypothetical protein; Provisional
Probab=97.46 E-value=0.0024 Score=52.70 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
..+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+.....++...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888888888888888888888888888888777666655543
No 274
>KOG0985|consensus
Probab=97.46 E-value=0.014 Score=55.55 Aligned_cols=56 Identities=9% Similarity=-0.180 Sum_probs=30.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 180 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 180 (341)
..|..+|....+.|...+|++.|-++ +++..+.....+..+.|.|++-++++.-+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44555555555666666665555443 244445555555555555555555555443
No 275
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.44 E-value=0.0003 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
+++.+|.++.+.|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665554
No 276
>KOG2396|consensus
Probab=97.42 E-value=0.0041 Score=54.48 Aligned_cols=90 Identities=12% Similarity=0.011 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Q psy16611 205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-IERASTYLQAA 283 (341)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a 283 (341)
.-...|+.++...+.+ ...|........+.+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.|...|.++
T Consensus 89 rIv~lyr~at~rf~~D--~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD--VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 4455677777776666 77777776666666667777777777777777777777776666665554 67777777777
Q ss_pred HHhCCCchhHHHH
Q psy16611 284 AASSPYLYETHYN 296 (341)
Q Consensus 284 l~~~p~~~~~~~~ 296 (341)
+..+|+++..|..
T Consensus 167 LR~npdsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNPDSPKLWKE 179 (568)
T ss_pred hhcCCCChHHHHH
Confidence 7777777766554
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.35 E-value=0.0002 Score=39.16 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 294 HYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
+.+||.+|..+|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555533
No 278
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.30 E-value=0.0033 Score=43.55 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=56.5
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDATCME---AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 202 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 202 (341)
+..++..|++-+|+++.+..+...+++.. .+..-|.++..+ +......+....+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~y----------- 59 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRY----------- 59 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHH-----------
Confidence 45677788888888888888877766553 333444444322 1111111111111
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
.-.++++|.++..+.|.. +..++.+|.-+-....|++++...++++.+
T Consensus 60 Ll~sve~~s~a~~Lsp~~--A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDS--AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhHHHHHHHhccChhH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 123455666666666666 666666666655555666666666666554
No 279
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.27 E-value=0.0055 Score=41.43 Aligned_cols=66 Identities=20% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHH
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAGDLQ 308 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~ 308 (341)
+..+++.++.+|++..+.+.++..+...|++++|++.+-.++..++++ ..+...+-.++...|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 445666777777777777777777777777777777777777766554 334444555555444433
No 280
>KOG2422|consensus
Probab=97.27 E-value=0.059 Score=48.36 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------------------
Q psy16611 167 DQPEVALLFYRRLLQM------------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------------------ 216 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------ 216 (341)
..|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....++++-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3466666666665443 4556677777888888888877777766666542
Q ss_pred ---cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHH-----
Q psy16611 217 ---ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLE-AREGHIERASTYLQAAAA----- 285 (341)
Q Consensus 217 ---~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~----- 285 (341)
.|.+ ...-+++..-..+.+.|-+.-|.++++-.+.++|. ++.....+..+| .+..+|.=-+..++..-.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 2222 11223344455566778888899998888888887 777666666665 455677766666666522
Q ss_pred hCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q psy16611 286 SSPYLYETHYNQAVISNLAGD---LQESYNIVKKSLDLHPG 323 (341)
Q Consensus 286 ~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 323 (341)
.-|+.. .-..++..|..... .+.|...+.+|+...|.
T Consensus 412 ~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 234332 22345556655554 56788888888888773
No 281
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.26 E-value=0.00078 Score=35.81 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.25 E-value=0.00076 Score=36.83 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
++.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 283
>KOG3824|consensus
Probab=97.22 E-value=0.0017 Score=53.29 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
+..-.+.+.-....|+.++|...|+.++++.|++++++..+|.+....++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 445556666677889999999999999999999999999999999999999999999999999999999988876654
No 284
>PRK10941 hypothetical protein; Provisional
Probab=97.19 E-value=0.0076 Score=49.81 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 296 (341)
.....++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999998876543
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.18 E-value=0.14 Score=44.80 Aligned_cols=140 Identities=14% Similarity=0.051 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH--HHHHHHh---------cCC---C
Q psy16611 191 NNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ--CLHLALS---------IDS---S 255 (341)
Q Consensus 191 ~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~---------~~p---~ 255 (341)
..-|.-+...|. -++|+..++.+++..+.+ ...-+. ...+.+ ..|.+|+. .+-+.+. +.| .
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD--~ec~n~-v~~fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYD--IECENI-VFLFVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcccc--HHHHHH-HHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 344555666666 667777777777777666 322211 111111 12222221 1111111 111 2
Q ss_pred CHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHH
Q psy16611 256 HGLSQNNLA--VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH----SYSWD 329 (341)
Q Consensus 256 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~ 329 (341)
+.+.-+.++ ..++..|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++.+ +-|++ ..+..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqK 534 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQK 534 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHH
Confidence 233344443 446788999999999999999999 899999999999999999999998876 34422 23445
Q ss_pred HHHHHHHHh
Q psy16611 330 ILRKLEQYF 338 (341)
Q Consensus 330 ~l~~~~~~~ 338 (341)
.+.-|++++
T Consensus 535 Al~lCqKh~ 543 (549)
T PF07079_consen 535 ALALCQKHL 543 (549)
T ss_pred HHHHHHHhh
Confidence 555555543
No 286
>KOG3616|consensus
Probab=97.18 E-value=0.01 Score=54.60 Aligned_cols=170 Identities=10% Similarity=0.063 Sum_probs=99.9
Q ss_pred cHHHHHHHcCCchHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLI------LKR----DATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 192 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~------l~~----~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 192 (341)
..|.++.+..++++|+++|++. +++ .|... ..-...|.-+.+.|+++.|+..|-++-. ...
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~k 737 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIK 737 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHH
Confidence 3456777777888888887653 222 22211 1123456667778888888888776532 112
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16611 193 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 272 (341)
.........+|.+|+.+++..-..... ...|-.++.-|...|+|+.|.++|.++= ....-..+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~---s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA---SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc---cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhcccc
Confidence 223344556677777766655433322 3455667777888888888888887752 22233466777888
Q ss_pred HHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHH
Q psy16611 273 IERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDLQESYNIV 314 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~ 314 (341)
+++|.+.-++... |... ..|...+.-+-+.|++.+|.+.|
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8887776666532 3222 24444555556666666555443
No 287
>KOG3824|consensus
Probab=97.17 E-value=0.0018 Score=53.09 Aligned_cols=77 Identities=22% Similarity=0.149 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
.-.+.+.-....|+.++|...|+.++.+.|.+ +.++..+|......++.-+|-.+|-+++.+.|.+.+++.+.....
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTN--PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCC--HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 34455666678899999999999999999999 999999999999999999999999999999999999988876543
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.14 E-value=0.011 Score=44.15 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=52.8
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 201 (341)
.+.+..+-...++.+++..++..+--..|+.++.-..-|.++...|++.+|+..|+.+....|..+.+--.++.|+..+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34444555556666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred Ch
Q psy16611 202 QY 203 (341)
Q Consensus 202 ~~ 203 (341)
+.
T Consensus 93 D~ 94 (160)
T PF09613_consen 93 DP 94 (160)
T ss_pred Ch
Confidence 54
No 289
>KOG1464|consensus
Probab=97.13 E-value=0.082 Score=43.00 Aligned_cols=190 Identities=7% Similarity=-0.019 Sum_probs=119.8
Q ss_pred HcCCchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CC-cHHHHHHHHHHHHHc
Q psy16611 131 GLNNMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQMG-----LY-NAELFNNLALCCFYS 200 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~ 200 (341)
...+.++|+..|+++++..+... .++-.+..+++.++++++-++.|.+.+..- .+ +....+.+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578899999999999988753 456678889999999999999998876531 11 111222222222234
Q ss_pred CChhHHHHHHHHHHhhc--ccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHH
Q psy16611 201 QQYDMVVTCFERALSLA--LNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------------HGLSQNNLA 264 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~--~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~ 264 (341)
.+.+--.+.|+..+..- ..+ .-......+|.+|+..++|.+-.+.+++.-..+.. -.++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 44444455555444321 112 00123356899999999888877777765543211 134555556
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchh--HH----HHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYE--TH----YNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~----~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
.+|..+++-.+-...|++++.+...-+. +. -.=|....+.|++++|-..|=.++.-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 7788888888888889999876543322 21 22244466778888888877777754
No 290
>KOG0985|consensus
Probab=97.12 E-value=0.05 Score=52.12 Aligned_cols=171 Identities=9% Similarity=-0.016 Sum_probs=82.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHH------H----------------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLIL------K----------------RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l------~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 182 (341)
.|.+....+-|++|..+|++-- + ..-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 3456666667777777766530 0 00123455555555555555555555555443
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN 262 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 262 (341)
+++..|..........|.|++-+.++..+-+..... .+-..+..+|.+.++..+-.++. ..|+.+. ...
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~ 1199 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQ 1199 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHH
Confidence 344445555555555555555555555544432221 11222222333333332222111 1122211 223
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
.|.-++..|.|+.|.-+|.. ..-|..|+..+..+|+|+.|...-+|+
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445555555555555432 234556666666677777766666554
No 291
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.12 E-value=0.0066 Score=41.06 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16611 140 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184 (341)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 184 (341)
..+++.++.+|++.++.+.++..+...|++++|++.+-.+++.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 334444444444444444444444444444444444444444433
No 292
>KOG2396|consensus
Probab=97.09 E-value=0.0083 Score=52.63 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC-HHHHHHHHH
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD-TRLAIQCLH 247 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 247 (341)
...-...|+++....+.+...|........+.+.+.+--..|.+++..+|++ +++|..-+.-.+..+. .+.|...+.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHH
Confidence 3456778999999999999999999888888888999999999999999999 9999999988887776 999999999
Q ss_pred HHHhcCCCCHHHHHHHHH
Q psy16611 248 LALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 248 ~al~~~p~~~~~~~~l~~ 265 (341)
++++.+|+++..|...-.
T Consensus 165 rgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHhhcCCCChHHHHHHHH
Confidence 999999999998865433
No 293
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.07 E-value=0.18 Score=44.16 Aligned_cols=203 Identities=10% Similarity=0.086 Sum_probs=144.7
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---------------- 182 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 182 (341)
...|+.....+...++-+.|+...++++...|. ....++.+|....+.++-..+|+++.+.
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~ 378 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV 378 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc
Confidence 366777667777888888999888888777665 6677888888777777777777765431
Q ss_pred --CCC-cHH-----------HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH-HHHHhcCCHHHHHHHHH
Q psy16611 183 --GLY-NAE-----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS-HVAIGISDTRLAIQCLH 247 (341)
Q Consensus 183 --~p~-~~~-----------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~ 247 (341)
++. ..+ +|..+-+...+..-...|..+|-++-+..-.. ..++..-| .-+...|++.-|...|+
T Consensus 379 D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~--h~vyi~~A~~E~~~~~d~~ta~~ife 456 (660)
T COG5107 379 DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG--HHVYIYCAFIEYYATGDRATAYNIFE 456 (660)
T ss_pred cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC--cceeeeHHHHHHHhcCCcchHHHHHH
Confidence 110 111 12223333334455677788888776654222 33333333 33567899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 248 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 248 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
-.+...|+++......-..+...++-+.|...|+.++..-.+. ..+|..+...-..-|+...+...-++...+.|...
T Consensus 457 lGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 457 LGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 9999999998877777788899999999999999888654333 45777777778888999988888888888888764
Q ss_pred H
Q psy16611 326 Y 326 (341)
Q Consensus 326 ~ 326 (341)
.
T Consensus 537 ~ 537 (660)
T COG5107 537 L 537 (660)
T ss_pred H
Confidence 3
No 294
>KOG3616|consensus
Probab=97.05 E-value=0.029 Score=51.81 Aligned_cols=169 Identities=13% Similarity=0.078 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH------Hc------------------CCCc-HHHHHHHHHHHHHcCChhHHHHHH
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLL------QM------------------GLYN-AELFNNLALCCFYSQQYDMVVTCF 210 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al------~~------------------~p~~-~~~~~~la~~~~~~~~~~~A~~~~ 210 (341)
|-.++.-|...|+|+.|.++|.++- .+ .|.. ...|...+.-+-..|+|.+|...|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3456777778888888888776541 11 1221 223444455566677777777766
Q ss_pred ------HHHHhhcccc----------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC-------
Q psy16611 211 ------ERALSLALNE----------------NAADVWYNISHVAIGISDTRLAIQCLHLALSID------SS------- 255 (341)
Q Consensus 211 ------~~al~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~------- 255 (341)
.+++.+.... ...+.+..++.-+...|+...|.+.|-++-... ..
T Consensus 848 iti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 848 ITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDA 927 (1636)
T ss_pred EEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHH
Confidence 3344431111 112345567777777888888888776653221 00
Q ss_pred ----------CHH--HHHHH---------HHHHHHhCCHHHHHHHH------HHHHH-----hCCCchhHHHHHHHHHHH
Q psy16611 256 ----------HGL--SQNNL---------AVLEAREGHIERASTYL------QAAAA-----SSPYLYETHYNQAVISNL 303 (341)
Q Consensus 256 ----------~~~--~~~~l---------~~~~~~~g~~~~A~~~~------~~al~-----~~p~~~~~~~~l~~~~~~ 303 (341)
+.. +.+.. ...+-+.|-.+.|+..- +-+++ .....+.++..++..+..
T Consensus 928 yriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led 1007 (1636)
T KOG3616|consen 928 YRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED 1007 (1636)
T ss_pred HHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh
Confidence 000 00000 01122333333333321 11111 122345688889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q psy16611 304 AGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 304 ~g~~~~A~~~~~~al~~~p~~ 324 (341)
.|++++|.++|-.+++++.-|
T Consensus 1008 egk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhhhhHhhHHHhhccccc
Confidence 999999999999999987554
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.04 E-value=0.013 Score=40.76 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 241 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
.++++|.++..+.|..+..++.+|.-+.....|+++..-.++++.+.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 57889999999999999999999998888889999999999998763
No 296
>KOG3364|consensus
Probab=97.03 E-value=0.02 Score=41.17 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhC---CHHHHHHHHHHHHH-hCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 257 GLSQNNLAVLEAREG---HIERASTYLQAAAA-SSPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
....+++++++.... +..+.+.+++..++ -+|.. .+..+.|+..+.+.++|++++.+.+..++..|+|..+..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345556666665443 34456666666665 33322 23556677777777777777777777777777777766666
Q ss_pred HHHHHH
Q psy16611 332 RKLEQY 337 (341)
Q Consensus 332 ~~~~~~ 337 (341)
..+...
T Consensus 112 ~~ied~ 117 (149)
T KOG3364|consen 112 ETIEDK 117 (149)
T ss_pred HHHHHH
Confidence 655543
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.01 E-value=0.018 Score=44.63 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCH----HHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS--SHG----LSQ 260 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~ 260 (341)
.++..+|..|...|++++|++.|.++....... ...+.++.+..+.+..+++.....+..++-..-. .+. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677777777777777777777766654333 3456667777777777777777777776654422 222 123
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..-|..+...++|.+|...|-.+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 3445566667777777777766543
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.11 Score=39.33 Aligned_cols=120 Identities=9% Similarity=0.027 Sum_probs=57.1
Q ss_pred cCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHH
Q psy16611 166 NDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRL 241 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~ 241 (341)
.+..++|+..|...-+.+-.. ..+.+..+.+....|+...|+..|..+-...+.. ..-.+...-+.++...|-|++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 345555665555554433222 2234455555556666666666666555444332 111233334444555555555
Q ss_pred HHHHHHHHH-hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 242 AIQCLHLAL-SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 242 A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
-....+..- ..+|-...+.-.||..-++.|++.+|...|.+...
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444333321 11233334444455555555555555555555444
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.93 E-value=0.26 Score=46.85 Aligned_cols=190 Identities=14% Similarity=0.059 Sum_probs=121.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcHH--HHHHH
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMG----LYNAE--LFNNL 193 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~--~~~~l 193 (341)
.|.+....|++++|+++.+.++..-|.+ ..++..+|.+..-.|++++|..+.+.+.+.. ..... +....
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~ 543 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ 543 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4578888999999999999999887763 4567788999999999999999999887762 22222 33445
Q ss_pred HHHHHHcCCh--hHHHHHHHHHHh----hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC--H-HHH
Q psy16611 194 ALCCFYSQQY--DMVVTCFERALS----LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID----SSH--G-LSQ 260 (341)
Q Consensus 194 a~~~~~~~~~--~~A~~~~~~al~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~-~~~ 260 (341)
+.++..+|+. .+....+...-. ..|.. .......+.++...-+++.+.......++.. |.. . ..+
T Consensus 544 s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~--~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~ 621 (894)
T COG2909 544 SEILEAQGQVARAEQEKAFNLIREQHLEQKPRH--EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLAL 621 (894)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHH
Confidence 7778888833 333333332222 22322 2233333333333333666666666665543 222 2 233
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-hh------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAASSPYL-YE------THYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
+.++.++...|++++|...+.+......+. .. ++.-.......+|+..+|..+..+
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 588999999999999999999887654332 11 111122234457898888888777
No 300
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.1 Score=47.08 Aligned_cols=133 Identities=13% Similarity=-0.027 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16611 167 DQPEVALLFYRRLLQMGLYNAELFNN--LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (341)
+....++..+...+..++.++..+.. +...+...+....+.-.++..+..+|.+ ..+..+++......|....+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN--CPAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc--chHHHHHHHHHHHhhhHHHHHH
Confidence 33334666666666677777765333 3556666777777777888888888887 7788888877776666665555
Q ss_pred HHHH-HHhcCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 245 CLHL-ALSIDSSHGLSQNNL------AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 245 ~~~~-al~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
.+.+ +....|.+..+...+ +.....+|+..++...++++..+.|.++.+...+....
T Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 123 DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 5554 677777776665555 66667777777788888888888887766555554443
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.88 E-value=0.01 Score=35.44 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYET 293 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 293 (341)
++.++..+.++|+|++|..+.+.++++.|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444555555555555555555555555555443
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.85 E-value=0.23 Score=41.74 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=65.4
Q ss_pred HHcCCchHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcC----C---C-------c
Q psy16611 130 EGLNNMPMSVKYYKLILKRD----ATC----MEAIACIGVNHFYND-QPEVALLFYRRLLQMG----L---Y-------N 186 (341)
Q Consensus 130 ~~~g~~~~A~~~~~~~l~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~----p---~-------~ 186 (341)
..+|+++.|..++.++-... |+. ...+++.|......+ +++.|..+++++.+.- + . .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46777777777777765433 221 234556666666666 7777777777776551 1 0 0
Q ss_pred HHHHHHHHHHHHHcCChh---HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 187 AELFNNLALCCFYSQQYD---MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
..++..++.+|...+.++ +|....+.+-...|+. +..+...-.++...++.+++.+.+.+++..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 123555666666555443 2333333333334444 444444444444456666666666666554
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.83 E-value=0.0028 Score=32.98 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
++..+|.++...|++++|+.+|++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555555555555555555555555443
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.83 E-value=0.068 Score=37.53 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=48.5
Q ss_pred HHcCChhHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHH--
Q psy16611 198 FYSQQYDMVVTCFERALSLALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALSI-------DSSHGL-- 258 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~-- 258 (341)
+.-|.|++|...+++++.....- .....+..|+..+..+|+|++++....+++.. +.+...
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 34567777777777777653211 12345666777777778877777666665532 222222
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 259 --SQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 259 --~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
+.++.+..+...|+.++|+..|+.+-+
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 233445555556666666666655543
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.80 E-value=0.25 Score=41.53 Aligned_cols=198 Identities=16% Similarity=0.037 Sum_probs=122.2
Q ss_pred hHhhhcHHHHHHHcC-CchHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHhcCChH---HHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLN-NMPMSVKYYKLILKR----DAT----------CMEAIACIGVNHFYNDQPE---VALLFYRRLL 180 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~----~~~----------~~~~~~~la~~~~~~~~~~---~A~~~~~~al 180 (341)
....++.|......+ +++.|..+++++.+. ... ...++..++.+|...+.++ +|..+.+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 366888999999999 999999999999876 211 1345668888998877655 4555666666
Q ss_pred HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCH
Q psy16611 181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSID--SSHG 257 (341)
Q Consensus 181 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~ 257 (341)
...|+.+.++...-.++...++.+++.+.+.+++...+.. ...........-+.. .....|...+...+... |...
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence 6778888877666666666899999999999998875422 112222222222222 34456777777766432 3222
Q ss_pred HHHHHHHH---HHHHhC--C------HHHHHHHHHHHHHh--CCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 258 LSQNNLAV---LEAREG--H------IERASTYLQAAAAS--SPYLYE-------THYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 258 ~~~~~l~~---~~~~~g--~------~~~A~~~~~~al~~--~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
. +..... ++...+ + .+.....+...... .|-... .+.+.|.-.++.++|++|..+|+-+
T Consensus 194 ~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 194 Q-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred H-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1 322222 222222 1 22233333322211 122222 4456788899999999999999977
Q ss_pred H
Q psy16611 318 L 318 (341)
Q Consensus 318 l 318 (341)
+
T Consensus 273 l 273 (278)
T PF08631_consen 273 L 273 (278)
T ss_pred H
Confidence 6
No 306
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.78 E-value=0.0021 Score=50.42 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3455677777777777777777777777777777777777777777777777777776543
No 307
>KOG3364|consensus
Probab=96.77 E-value=0.042 Score=39.55 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcC---ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 188 ELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS 259 (341)
Q Consensus 188 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 259 (341)
...+++++++.... +..+.+.+++..++..+.....+..+.++..+.+.++|+.++.+.+..++..|++.++
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34444444444432 2334444455544311111123444445555555555555555555555555554433
No 308
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.15 Score=46.03 Aligned_cols=137 Identities=13% Similarity=0.019 Sum_probs=106.3
Q ss_pred cCCchH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16611 132 LNNMPM-SVKYYKLILKRDATCMEAIAC--IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 208 (341)
Q Consensus 132 ~g~~~~-A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 208 (341)
.+.... ++..+...+..++.++..+.. +...+...+....+.-.+...+..+|.+..+..+|+..+...|....+..
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHH
Confidence 344444 667777777788888777443 47777788999899999999999999999999999999888877777666
Q ss_pred HHHH-HHhhccccchHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 209 CFER-ALSLALNENAADVWYN------ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 209 ~~~~-al~~~~~~~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
.+.. +....|.+ ...... ++.....+|+..++.....++....|.++.+...+.....+.
T Consensus 123 ~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 123 DISEIAEWLSPDN--AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHHHHhcCcch--HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 6555 88888888 555444 488888899999999999999999999877766655553333
No 309
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.76 E-value=0.11 Score=36.61 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=70.1
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Q psy16611 223 ADVWYNISHV--AIGISDTRLAIQCLHLALSIDSS------------HGLSQNNLAVLEAREGHIERASTYLQAAAA--- 285 (341)
Q Consensus 223 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--- 285 (341)
..+|..|+.. ....|-|++|...++++...... +.-.+..|+.++..+|+|++++..-.+++.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3444444443 45668999999999999876422 234667788999999999998877777664
Q ss_pred ----hCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 286 ----SSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 286 ----~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
++.+... +-++.+..+...|+.++|+..|+++-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4555444 4467888999999999999999998754
No 310
>KOG3783|consensus
Probab=96.75 E-value=0.34 Score=43.45 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=121.0
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
..|.++ .-.+..+..+...|+.+.|+.+++..+...-. ..-.++.+|.++..+.+|..|-..+...........-
T Consensus 262 ~~p~ga---~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a 338 (546)
T KOG3783|consen 262 RYPKGA---LWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHA 338 (546)
T ss_pred hCCCCc---cHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHH
Confidence 344444 33444556667777777777777777661100 1234557777777788888888888887776665555
Q ss_pred HHHHHH-HHHHH--------cCChhHHHHHHHHHH---hhccccc--------h--------------HH--HHHHHHHH
Q psy16611 189 LFNNLA-LCCFY--------SQQYDMVVTCFERAL---SLALNEN--------A--------------AD--VWYNISHV 232 (341)
Q Consensus 189 ~~~~la-~~~~~--------~~~~~~A~~~~~~al---~~~~~~~--------~--------------~~--~~~~la~~ 232 (341)
.|..++ -|++. .|+-++|..+++... ...|++. . .. -++.++.+
T Consensus 339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~ 418 (546)
T KOG3783|consen 339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYF 418 (546)
T ss_pred HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence 555444 33322 223333333333222 2211110 0 00 11222222
Q ss_pred HHh--cCCHHHHHHHHHHHH---hc-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC----chhHHHHHH
Q psy16611 233 AIG--ISDTRLAIQCLHLAL---SI-DSSH-GLSQNNLAVLEAREGHIERASTYLQAAAASS---PY----LYETHYNQA 298 (341)
Q Consensus 233 ~~~--~g~~~~A~~~~~~al---~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~l~ 298 (341)
+.. ....++..+ ++..+ +. ++++ .-.+..+|.++..+|+...|..+|+..++.. .. .+.+++.+|
T Consensus 419 Wngf~~~s~~~l~k-~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA 497 (546)
T KOG3783|consen 419 WNGFSRMSKNELEK-MRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELA 497 (546)
T ss_pred HhhcccCChhhHHH-HHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 211 111222221 11111 11 2222 2245678999999999999999999988431 11 245899999
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcCCCCH
Q psy16611 299 VISNLAGD-LQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 299 ~~~~~~g~-~~~A~~~~~~al~~~p~~~ 325 (341)
..|..+|. ..++..++.+|.....++.
T Consensus 498 ~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 498 LLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHhcccChHHHHHHHHHHHhhccccc
Confidence 99999999 9999999999998876653
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.75 E-value=0.069 Score=41.39 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chh----H
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYE----T 293 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~ 293 (341)
..++..+|..|.+.|++++|++.|.++....... .+.+.++..+....+++..+..++.++-..... +.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 5788999999999999999999999998876433 567788889999999999999999998765432 222 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 294 HYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
...-|..+...++|.+|...|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3345677778899999999988776444
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.72 E-value=0.01 Score=51.89 Aligned_cols=124 Identities=10% Similarity=-0.046 Sum_probs=83.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16611 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (341)
..|+.-.|-.-...++...|.++......+.+....|+|+.+...+.-+-..-... ..+...+-.....+|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~--~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT--DSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC--chHHHHHHHhhhchhhHHHHHH
Confidence 45666667666777777777777777777777777777777777665554443333 4445555556667777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 245 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
...-.+...-+++++...-+.....+|-++++..++++.+.++|..
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 7777776666666666555555666677777777777777776643
No 313
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.71 E-value=0.049 Score=43.55 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHc----C-C--CcHHHHHHHHHHHHHcCChhH-------HHHHHHHHHhhccc--c--chHHHHHH
Q psy16611 167 DQPEVALLFYRRLLQM----G-L--YNAELFNNLALCCFYSQQYDM-------VVTCFERALSLALN--E--NAADVWYN 228 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~----~-p--~~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~~~--~--~~~~~~~~ 228 (341)
..+++|++.|.-|+-. . + .-+..+..+|++|...|+.+. |++.|++++..... . ....+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3455555555554421 1 1 123455566666666666333 33333333332211 1 12334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
+|.+..+.|++++|..+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 555555555555555555555543
No 314
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.68 E-value=0.0041 Score=32.32 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
++..+|.++...|++++|+..|++++++.|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 315
>KOG2041|consensus
Probab=96.66 E-value=0.093 Score=48.32 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=29.8
Q ss_pred HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (341)
+...|+|-...+.++..-.-..+...-.++.++|..+..+..|++|.++|.+.
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445554444444432211111133567777888777777787777777664
No 316
>KOG1310|consensus
Probab=96.63 E-value=0.0089 Score=52.82 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGI---SDTRLAIQCLHLALSIDSSHGLSQNNLAVL 266 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 266 (341)
+..-|.--+..+.+..++..|.+++...|.. ...+.+.+.++++. |+.-.|+.-...+++++|....+++.|+.+
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~--~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDA--IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccch--hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 3333333344455666667777777766666 66666666666553 344455666666666666666677777777
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 267 EAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
+..++++.+|+.+...+....|.+
T Consensus 455 L~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCchh
Confidence 777777777776666665555543
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.63 E-value=0.042 Score=48.28 Aligned_cols=127 Identities=9% Similarity=-0.095 Sum_probs=104.1
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16611 129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 208 (341)
Q Consensus 129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 208 (341)
....|+.-.|-..+..++...|.++......+.++..+|+|+.+...+.-+-..-.........+-......|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45679999999999999999999999999999999999999999988766554433344455556667778899999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 209 CFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
.-.-.+...-++ +++...-+.....+|-++++..++++.+.++|...
T Consensus 379 ~a~~~l~~eie~--~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIED--EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCC--hhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 988888777676 77777777777788999999999999999987643
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.62 E-value=0.066 Score=42.82 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=48.2
Q ss_pred cCChhHHHHHHHHHHhhc----ccc-chHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhcCC------CCHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLA----LNE-NAADVWYNISHVAIGISDTRLAIQCLHL-------ALSIDS------SHGLSQN 261 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~-------al~~~p------~~~~~~~ 261 (341)
...+++|++.|.-|+-.. ... ..+..+..+|.+|...|+.+....++++ ++.... +...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 345666666666554431 111 3467788889999888885544444443 333221 1134455
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
.+|.+..+.|++++|+.+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5566666666666666666665543
No 319
>KOG3807|consensus
Probab=96.61 E-value=0.35 Score=40.67 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=76.1
Q ss_pred cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------------
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------------------ 185 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------ 185 (341)
.+.....+..+..+-++....+++++|+.+.++..++.-- ..-..+|.++|+++++....
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 3445666777888888888899999999888888777532 23456777788777753210
Q ss_pred -----c--HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy16611 186 -----N--AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLH 247 (341)
Q Consensus 186 -----~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (341)
+ ..+...++.|..++|+..+|++.++...+-.|-.....++-++...+....-|.+....+-
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1123456777777777777777777766655533233445555555555554444444333
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.54 E-value=0.0042 Score=48.84 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
......++.+.+.+.|.+++.+.|.. ...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w--~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW--AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh--hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34567889999999999999999999 99999999999999999999999999999998874
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.23 Score=37.63 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=104.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH
Q psy16611 161 VNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR 240 (341)
Q Consensus 161 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (341)
.-|++.+.-.++-..|..+++ +...++.++|+..|...-+-.-.....-+....+.+..+.|+..
T Consensus 47 y~yw~~s~as~sgd~flaAL~---------------lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta 111 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALK---------------LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA 111 (221)
T ss_pred eehhcccccccchHHHHHHHH---------------HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence 344555555555555555554 33567889999999887665544433556788899999999999
Q ss_pred HHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16611 241 LAIQCLHLALSIDSS--H--GLSQNNLAVLEAREGHIERASTYLQAAAA-SSPYLYETHYNQAVISNLAGDLQESYNIVK 315 (341)
Q Consensus 241 ~A~~~~~~al~~~p~--~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (341)
.|+..|.++-+..+- - ..+...-+.++...|.|++.....+..-. .+|--..+.-.||..-++.|++.+|..+|.
T Consensus 112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 999999998776532 1 22445567778899999988777665432 234444577889999999999999999999
Q ss_pred HHHh
Q psy16611 316 KSLD 319 (341)
Q Consensus 316 ~al~ 319 (341)
+...
T Consensus 192 qia~ 195 (221)
T COG4649 192 QIAN 195 (221)
T ss_pred HHHc
Confidence 9876
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.52 E-value=0.27 Score=43.08 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH--HHHHHHhh---------cccc-ch
Q psy16611 156 IACIGVNHFYNDQ-PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT--CFERALSL---------ALNE-NA 222 (341)
Q Consensus 156 ~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~~~~-~~ 222 (341)
+..-|.-++..|. -++|+..++.+++..+.+..+-+..- .+. ...|.+|+. .+-+.+.+ .|-. ..
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~-~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF-LFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH-HHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 3345666677776 88999999999999998875533221 111 122333322 12222221 2222 12
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 223 ADVWYNI--SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 223 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
.+.-+-+ |..++.+|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++...
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3344444 3456789999999999999999999 8999999999999999999999999763
No 323
>KOG4814|consensus
Probab=96.50 E-value=0.041 Score=49.93 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
++.+-|.-+++..+|..+++.|...+..-|.+ .+.....++..||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34556677788899999999999999987766 34667888999999999999999999999999999988888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh
Q psy16611 265 VLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~ 286 (341)
.+....|.-++|+.........
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888889999999988877654
No 324
>KOG1839|consensus
Probab=96.49 E-value=0.04 Score=54.14 Aligned_cols=160 Identities=15% Similarity=0.107 Sum_probs=119.2
Q ss_pred HHHHHHHcCCchHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCcHHH
Q psy16611 125 LAKIFEGLNNMPMSVK------YYKLIL-KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAEL 189 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~------~~~~~l-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 189 (341)
.|......|.+.++.+ ++.... ...|.....+..++.++...++.++|+..-.++.-+ .|+....
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3455556677776666 554332 346677888899999999999999999988777543 3556677
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSL--------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS------- 254 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 254 (341)
+.+++...+..++...|+..+.++..+ .|.. .....+++.++...++++.|+++.+.|++...
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~--a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT--ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch--hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 888888888888888999988888775 3444 66678888888888999999999999987542
Q ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 255 -SHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 255 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
.....+..++..+...+++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 12455667778888888888877777766554
No 325
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.48 E-value=0.012 Score=48.55 Aligned_cols=73 Identities=8% Similarity=-0.082 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN-LAVLEAREGHIERASTYLQAAAASSPYLYETHY 295 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 295 (341)
+..|...+....+.+-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++.++|+++..|.
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4455554444444455555555555555555555555443 233334445555555555555555555554443
No 326
>KOG3807|consensus
Probab=96.44 E-value=0.46 Score=39.99 Aligned_cols=174 Identities=12% Similarity=0.024 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccc-----------------
Q psy16611 157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN----------------- 219 (341)
Q Consensus 157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------------- 219 (341)
+.+-.......+..+-++....+++++|+.+.++..++.-- .--..+|...++++++....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 34444445556777788888999999999999988887643 23455677777777664110
Q ss_pred ------cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCc
Q psy16611 220 ------ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAASS-PYL 290 (341)
Q Consensus 220 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 290 (341)
+....+...++.|..++|+..+|++.++...+..|-. ..++-++...+....-|.+....+-+.-++. |.+
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence 0112234568999999999999999999988877732 2344556666666666665555554443332 333
Q ss_pred hhHHHHHHHHH-------------HHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 291 YETHYNQAVIS-------------NLAGD---LQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 291 ~~~~~~l~~~~-------------~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
....+.-+.+- .+.|- -..|++.+.++++.+|.-+.....+.
T Consensus 346 A~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 346 AAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 32222211111 11111 13578889999999998877554443
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.43 E-value=0.24 Score=36.59 Aligned_cols=74 Identities=16% Similarity=-0.005 Sum_probs=41.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 307 (341)
...++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..|+...+-.+..+...-.++.|+..+|+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33555555555555555555555555555555556666666666666555555444444445555555555553
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.41 E-value=0.06 Score=39.62 Aligned_cols=77 Identities=13% Similarity=-0.127 Sum_probs=49.9
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 203 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 203 (341)
......++.+++..++...--+.|+.++.-..-|.++...|++.+|+..|+......+..+...-.++.|+..+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34444666666666666666666766666666677777777777777777766666666666666666666665543
No 329
>KOG0890|consensus
Probab=96.40 E-value=0.54 Score=49.51 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CC----------
Q psy16611 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-PY---------- 289 (341)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---------- 289 (341)
...+.|...|++....|+++.|..++-+|.+.. -+.++...|..++..|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 346778888888888888888888888887765 46778888888888898888998888888654 22
Q ss_pred ch------hHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 290 LY------ETHYNQAVISNLAGDL--QESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 290 ~~------~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
.. .+...++......+++ ..-+++|..+.++.|...+.++.+++...
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 11 1333444455555553 34567888888888877666666664443
No 330
>KOG4814|consensus
Probab=96.25 E-value=0.072 Score=48.44 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
++.+-|.-+++..+|..++++|...+..-|.+ .....+++.+|..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 44556677788899999999999999877655 456788999999999999999999999999999998888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 299 VISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
.+....|+-++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 88899999999999988877553
No 331
>KOG1310|consensus
Probab=96.23 E-value=0.023 Score=50.38 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---cCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY---SQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
...-|.-.+..+....++..|.+++...|.....+.+.+.++++ .|+.-.|+.-+..++.++|.. ..+|+.|+.+
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~--~kah~~la~a 454 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI--QKAHFRLARA 454 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH--HHHHHHHHHH
Confidence 33334333444556778888888888888888888888877776 356667788888888888888 8889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
+..++++.+|+.+...+.-..|.+.
T Consensus 455 L~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999888877777777543
No 332
>KOG1839|consensus
Probab=96.17 E-value=0.078 Score=52.21 Aligned_cols=163 Identities=16% Similarity=0.097 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCChHHHHH------HHHH-HHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--------ccc
Q psy16611 156 IACIGVNHFYNDQPEVALL------FYRR-LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--------LNE 220 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~ 220 (341)
....+......|.+.++.+ ++.. .-.+.|.....+..++.++...+++++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455555556666776666 5552 334578889999999999999999999999888776542 333
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---
Q psy16611 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--- 289 (341)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 289 (341)
...+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+..
T Consensus 1015 --~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1015 --KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred --HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 667888888888888999999998888765 3444556678888888999999999999999885421
Q ss_pred -----chhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 290 -----LYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 290 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
....+..++..+..++++..|....+....+
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2336677888888888888888777766643
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.02 E-value=0.52 Score=42.33 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHHcCCchHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16611 128 IFEGLNNMPMSVKYYK--LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 205 (341)
Q Consensus 128 ~~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 205 (341)
.....++++++..+.. +.+..-| ..-...++..+.+.|-.+.|+...+ +++..+.|+ .+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHH
Confidence 4455788888777765 2222222 3446677778888888888877643 445555544 46788888
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
|.+..++. ++ ...|..+|...+.+|+++-|.++|+++- -+..+..+|.-.|+.+.=.+..+.+..
T Consensus 337 A~~~a~~~-----~~--~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL-----DD--PEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC-----ST--HHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc-----Cc--HHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 87665432 34 7799999999999999999999998863 234455667777777655555555443
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.01 E-value=0.02 Score=32.08 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
++.++|.+|...|++++|+.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555444
No 335
>KOG2581|consensus
Probab=95.98 E-value=0.45 Score=41.12 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CC--CchhH
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--SP--YLYET 293 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p--~~~~~ 293 (341)
..|+.+..+|...|+...-...+...+... ...+...+.+-..|...+.|+.|.....+..-- .. .....
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 345555555555555444444444433321 111223344445555555565555555444310 00 11224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 294 HYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
.+.+|.+..-+++|..|.++|-+++...|+
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 445566666666666666666666666665
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.83 E-value=0.024 Score=31.72 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
..++.++|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456788888888888888888888888765
No 337
>KOG0529|consensus
Probab=95.82 E-value=0.76 Score=39.90 Aligned_cols=89 Identities=7% Similarity=0.008 Sum_probs=40.7
Q ss_pred cCCch-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 132 LNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYND------------QPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 132 ~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
.|.++ ++++.=.+.+..+|+...+|...-.++.... .+++-+.+...+++.+|++..+|+....++.
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34443 3555556666666666655554333332111 1233333444444444444444444444444
Q ss_pred HcCC--hhHHHHHHHHHHhhcccc
Q psy16611 199 YSQQ--YDMVVTCFERALSLALNE 220 (341)
Q Consensus 199 ~~~~--~~~A~~~~~~al~~~~~~ 220 (341)
+.+. +..=+.+++++++.+|.+
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRN 144 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCccc
Confidence 3332 334444444444444444
No 338
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.75 E-value=0.02 Score=47.27 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=72.1
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN-ISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 175 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
.|.++....++++..|...+......+.|.+--..|.+++..+|.+ ++.|.. -+.-+...++++.+...|.++++.+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 4455556678888888888888888888999999999999999999 888876 5566777889999999999999999
Q ss_pred CCCHHHHHHHH
Q psy16611 254 SSHGLSQNNLA 264 (341)
Q Consensus 254 p~~~~~~~~l~ 264 (341)
|+++..|...-
T Consensus 173 ~~~p~iw~eyf 183 (435)
T COG5191 173 SRSPRIWIEYF 183 (435)
T ss_pred CCCchHHHHHH
Confidence 99988876543
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.69 E-value=1.5 Score=39.34 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=125.0
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 201 (341)
...+-.++.+..+..--..++.+++.... +..+++.++.+|... ..+.-...+++.++.+-++...-..|+..|.. +
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence 33333455555555556677788777654 677889999999988 56777888999999998888888888888876 8
Q ss_pred ChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHhCCHHH
Q psy16611 202 QYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLS-QNNLAVLEAREGHIER 275 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~l~~~~~~~g~~~~ 275 (341)
+...+..+|.+++...-.. ...++|-.+-.. --.+.+.-+....+.-..... ...+ +..+-.-|....++.+
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 8899999999988753221 112233333221 122333333333333222211 1222 2223344566788999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCCC
Q psy16611 276 ASTYLQAAAASSPYLYETHYNQAVISNL--------------------AGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 324 (341)
|+..+...++.+..+..+.-++...+.. -.++.+++.-|++.+..+..|
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9999999999888887777766666554 345556666666666554433
No 340
>KOG2041|consensus
Probab=95.61 E-value=0.5 Score=43.81 Aligned_cols=80 Identities=8% Similarity=-0.038 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 266 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 266 (341)
..++.++|..+.....|++|.++|.+.-.. -++..+++....|++- +.....-|++...+-.+|.+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHH
Confidence 356778888888888888888877665221 1233444444444432 22222335555555555555
Q ss_pred HHHhCCHHHHHHHH
Q psy16611 267 EAREGHIERASTYL 280 (341)
Q Consensus 267 ~~~~g~~~~A~~~~ 280 (341)
+...|.-++|.+.|
T Consensus 862 f~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhhchHHHHHHHH
Confidence 55555555555444
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.52 E-value=2.3 Score=40.30 Aligned_cols=197 Identities=12% Similarity=-0.002 Sum_probs=117.4
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHcCC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRD---AT------CMEAIACIGVNHFYNDQPEVALLFYR--------RLLQMGL 184 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~p 184 (341)
.+..+....-.+++..+...+..+.... |. .+..++..|..+...|+.+.|+.+|. .+....+
T Consensus 364 ~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 364 LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence 3445667778899999998888776543 22 36778899999999999999999998 3333333
Q ss_pred CcH---HHHHHHHHHHHHcCChhH----HHHHHHHHHhh---ccccchHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhc
Q psy16611 185 YNA---ELFNNLALCCFYSQQYDM----VVTCFERALSL---ALNENAADVWYNISHVA--IGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 185 ~~~---~~~~~la~~~~~~~~~~~----A~~~~~~al~~---~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~ 252 (341)
.+. .+..++..++...+.-.. +...+++.-.. .+......++..+-.++ ...-...++...+.++++.
T Consensus 444 ~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~ 523 (608)
T PF10345_consen 444 FRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKM 523 (608)
T ss_pred chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Confidence 332 234455666665554333 33444333221 11111111222222222 1223344777777777765
Q ss_pred C-C---CC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hh-HHH-----HHHHHHHHcCCHHHHHHHHHH
Q psy16611 253 D-S---SH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YE-THY-----NQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 253 ~-p---~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~-~~~-----~l~~~~~~~g~~~~A~~~~~~ 316 (341)
. . +. .-++..++..++ .|+..+.......+....... .. .|. .+...+...|+.++|.....+
T Consensus 524 ~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~ 602 (608)
T PF10345_consen 524 ANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ 602 (608)
T ss_pred HHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4 1 11 224555666665 788888777777777654433 33 342 456668889999999988877
Q ss_pred HHh
Q psy16611 317 SLD 319 (341)
Q Consensus 317 al~ 319 (341)
...
T Consensus 603 ~~~ 605 (608)
T PF10345_consen 603 LDR 605 (608)
T ss_pred HHH
Confidence 654
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.51 E-value=2.3 Score=40.28 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCC--cHH----HHHHHHHHHHHcCChh
Q psy16611 136 PMSVKYYKLILKRDAT----CMEAIACIGVNHF-YNDQPEVALLFYRRLLQMGLY--NAE----LFNNLALCCFYSQQYD 204 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~----~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~~~~~ 204 (341)
..|+.+++-+++..+- ...+.+.+|.++. ...+++.|..++.+++.+... ..+ +.+.++.++...+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777777742221 3556788899888 778999999999999877643 222 3456788888877777
Q ss_pred HHHHHHHHHHhhcccc--chHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHhCCHH
Q psy16611 205 MVVTCFERALSLALNE--NAADVWYNIS--HVAIGISDTRLAIQCLHLALSID--SSHGLS----QNNLAVLEAREGHIE 274 (341)
Q Consensus 205 ~A~~~~~~al~~~~~~--~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~l~~~~~~~g~~~ 274 (341)
|...+++.++..... ......+.+- ..+...+++..|++.++...... ..++.+ ....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 999999998876552 0122222222 22333479999999999988776 344332 233455666778788
Q ss_pred HHHHHHHHHHHhCC------C----chhHHHHHHHH--HHHcCCHHHHHHHHHHH
Q psy16611 275 RASTYLQAAAASSP------Y----LYETHYNQAVI--SNLAGDLQESYNIVKKS 317 (341)
Q Consensus 275 ~A~~~~~~al~~~p------~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~a 317 (341)
++++..+++..... + ...+|..+-.+ +...|+++.+...+++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888754321 1 12345444443 45567766666655443
No 343
>KOG2581|consensus
Probab=95.50 E-value=1.5 Score=38.07 Aligned_cols=131 Identities=14% Similarity=0.059 Sum_probs=92.7
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcHHHHH
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDA-T--------CMEAIACIGVNHFYNDQPEVALLFYRRLLQM-----GL-YNAELFN 191 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~-~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p-~~~~~~~ 191 (341)
..++.+.++.+|..+-+..+..-- . .+..|+.+..+|...|+...-...+...+.. +. ......+
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 334556889999888777654311 1 2456778888888888866655555544432 22 2234566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhccc--cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALN--ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
.|-..|...+.|+.|-....+..--... +.....++.+|.+..-+++|..|.+++-+|+...|++.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 7778888899999999888877522111 13367788899999999999999999999999999753
No 344
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.18 Score=41.24 Aligned_cols=77 Identities=16% Similarity=-0.000 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
...++-..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-....++.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34455566777788888888888888888888777777888888888888888888887888887776655544443
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.23 E-value=0.15 Score=42.19 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..++..++..+...|+++.+++.+++.+..+|.+-..|..+-..|...|+...|+..|++.-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 556666666666667777777777777777776666676666677777777777766666554
No 346
>KOG2422|consensus
Probab=95.18 E-value=2.4 Score=38.62 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=101.5
Q ss_pred HcCCchHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------
Q psy16611 131 GLNNMPMSVKYYKLILKR------------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---------------- 182 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 182 (341)
....|+++...|.-+... .|-+.+.+..++.+...+|+.+-|-...++++=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888887777553 4667888999999999999988777777766521
Q ss_pred -----CCCcHH---HHHHHHHHHHHcCChhHHHHHHHHHHhhccc-cchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHh-
Q psy16611 183 -----GLYNAE---LFNNLALCCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVA-IGISDTRLAIQCLHLALS- 251 (341)
Q Consensus 183 -----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~- 251 (341)
.|.+-. +.+..-..+.+.|-+..|.++++-.+.++|. + +.+...+...| ....+|.=-+..++..-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eD--Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSED--PLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCC--chhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 122222 2333344556689999999999999999998 5 55444444444 455666666666665522
Q ss_pred ----cCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCC
Q psy16611 252 ----IDSSHGLSQNNLAVLEAREGH---IERASTYLQAAAASSP 288 (341)
Q Consensus 252 ----~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 288 (341)
.-|+.+ .-..++..|..... -..|...+.+|+...|
T Consensus 408 n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 408 NKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 234322 22345555555544 5678888888887766
No 347
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.16 E-value=0.17 Score=34.61 Aligned_cols=27 Identities=41% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
+.+++.++...|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 348
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.13 E-value=0.51 Score=46.25 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=97.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 193 LALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGI----S---DTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
....+...+.|+.|+..|++.-.-.|.. .-.++.+..|..+..+ | .+++|+..|++.. -.|.-+--|...+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 3467777889999999999999888876 4467788888777543 2 4667777776643 3466677888899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchhHH-------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYETH-------YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
.+|.++|+|++-+++|.-+++..|+++..- +.|=.+... +...|....--++...|......
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccch
Confidence 999999999999999999999998887632 233333322 33456677777788888765443
No 349
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.10 E-value=0.16 Score=34.66 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=25.3
Q ss_pred HcCChhHHHHHHHHHHhhcccc-c------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 199 YSQQYDMVVTCFERALSLALNE-N------AADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~-~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
..|+|.+|++.+.+.+...... . ...+..+++.++...|++++|+..+++++++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555555555554443322 0 1223444555555555555555555555544
No 350
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.94 E-value=0.42 Score=39.67 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
.++..++..+...|+++.++..+++.+..+|-+...|..+...|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445555555555566666666666666665555555555566666665555555555544
No 351
>KOG0529|consensus
Probab=94.91 E-value=1.9 Score=37.53 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=66.0
Q ss_pred cCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC------------ChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 166 NDQP-EVALLFYRRLLQMGLYNAELFNNLALCCFYSQ------------QYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 166 ~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
.|.+ +++++.-.+.+..+|+...+|+.--.++...- .+++-+.+...+++.+|+. ..+|+....+
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npks--Y~aW~hR~w~ 118 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKS--YGAWHHRKWV 118 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchh--HHHHHHHHHH
Confidence 3443 45777777778888887777765544443311 1233344444455555555 5555555555
Q ss_pred HHhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 233 AIGISD--TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG----HIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 233 ~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
+.+.+. +..=+.+++++++.+|.+..+|...=.+..... ...+=+++..+++..++.|..+|.+...++
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 543332 344455555555555555444443333332221 123334444445544454545554444443
No 352
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.86 E-value=0.41 Score=46.86 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHHhCCCchhHHHHH
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEARE----G---HIERASTYLQAAAASSPYLYETHYNQ 297 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 297 (341)
....++...+.|+.|+..|++.-...|.. .++.+..|...... | .+++|+..|++.- -.|.-+--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 34566777889999999999999988865 45777788776543 3 4667777776643 235555678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
+.+|..+|+++|-+++|.-+++..|+++..-....++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 9999999999999999999999999998765444433
No 353
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.75 E-value=0.25 Score=42.84 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=65.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcccc----------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16611 193 LALCCFYSQQYDMVVTCFERALSLALNE----------------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 256 (341)
=|..++++++|..|.--|+.++++..+- ....+-..+..||..+++.+-|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3566778888888888888888883211 011233457778888888888888888888888887
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
..-+...+.++..+.+|.+|...+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788887778887776655444
No 354
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.36 Score=39.61 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 295 (341)
.....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4455666677888999999999999999999999999999999999999999999999999999998876543
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.62 E-value=0.59 Score=36.56 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhCCHHHHH
Q psy16611 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS----HGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.-++|...|-++-.. |.-..++..+.+|..|. ..+.++++..+.+++++... +++++..|+.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666554322 22233778888887776 46788888888888887533 4788888888888888888774
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.58 E-value=0.88 Score=40.92 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH
Q psy16611 164 FYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242 (341)
Q Consensus 164 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 242 (341)
...++++++.+..... ++-|.- ......++..+..+|.++.|+.+.+ + +...+.|+ .+.|+.+.|
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D--~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D--PDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------HHHHHHHH---HHCT-HHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C--hHHHhHHH---HhcCCHHHH
Confidence 3458888877776422 122222 3446677778888888887775532 2 45555554 477999888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
.+..++ .++...|..||.....+|+++-|.++|+++
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 776543 346889999999999999999999999986
No 357
>KOG1464|consensus
Probab=94.56 E-value=1.6 Score=35.84 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=97.0
Q ss_pred cCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chH-HHHHHHHHHHHhcC
Q psy16611 166 NDQPEVALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAA-DVWYNISHVAIGIS 237 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~-~~~~~la~~~~~~g 237 (341)
..+.++|+..|++++++.+.-. .++..+..+++.+++|++-.+.|++.+..-..- ... ...+.+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3578999999999999987654 356677889999999999999999887652111 001 11111111111223
Q ss_pred CHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------------chhHHHHHHH
Q psy16611 238 DTRLAIQCLHLALSI--DSSHGL----SQNNLAVLEAREGHIERASTYLQAAAASSPY------------LYETHYNQAV 299 (341)
Q Consensus 238 ~~~~A~~~~~~al~~--~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~ 299 (341)
+.+--.++|+..+.. +..+.. ....+|.+|+..|+|.+-.+.+++.-..... -.+++..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333344433321 112222 3346899999999888877777665443211 1124445566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 300 ISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~p 322 (341)
.|..+.+..+-...|++++.+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhc
Confidence 78888888888889999987643
No 358
>KOG1538|consensus
Probab=94.45 E-value=0.9 Score=41.86 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=25.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
.++...+++.+|...-++.-+.- .++++..|..+.+..+++||.+.|.++
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34445566666655544422221 235555666666666666665555544
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.34 E-value=0.79 Score=35.88 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHH
Q psy16611 168 QPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAI 243 (341)
Q Consensus 168 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~ 243 (341)
.-+.|...|-++-.. .-++++..+.||..|. ..+.++++..+.+++++.... ..++++..|+.++..+|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 334555555544322 1245666666776655 466777777777777765433 34677777777777777777764
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.21 E-value=0.42 Score=30.97 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHHhcC
Q psy16611 236 ISDTRLAIQCLHLALSID 253 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~~ 253 (341)
.++.++|+..++++++..
T Consensus 19 ~~~~~~Al~~W~~aL~k~ 36 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKI 36 (80)
T ss_pred cchHHHHHHHHHHHHhhc
Confidence 333444444444444433
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.21 E-value=0.21 Score=27.06 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q psy16611 294 HYNQAVISNLAGDLQESYNI 313 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~ 313 (341)
++.+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 362
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.19 E-value=0.24 Score=41.51 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
|+.+|.+|+.+.|.. ...++.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~--G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN--GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB--SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC--CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 455666666666666 66666666666666666666666666665443335555555555544
No 363
>KOG0890|consensus
Probab=94.06 E-value=2 Score=45.66 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC-------
Q psy16611 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SS------- 255 (341)
Q Consensus 184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~------- 255 (341)
....++|...|.+....|+++.|...+-.+.+.. . +.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 3457889999999999999999999999888775 3 7899999999999999999999999999664 22
Q ss_pred ---C------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCchhHHHHHHHHHHH------------cCCHHH---
Q psy16611 256 ---H------GLSQNNLAVLEAREGHI--ERASTYLQAAAASSPYLYETHYNQAVISNL------------AGDLQE--- 309 (341)
Q Consensus 256 ---~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~g~~~~--- 309 (341)
. ..+...++......+++ ++-+++|+.+.++.|...+.++.+|..|.+ .|++..
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Confidence 1 12333444444455543 457789999999999888888888865543 345544
Q ss_pred HHHHHHHHHhcCCCC
Q psy16611 310 SYNIVKKSLDLHPGH 324 (341)
Q Consensus 310 A~~~~~~al~~~p~~ 324 (341)
++..|.+++.....+
T Consensus 1823 ~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHHHHhcchh
Confidence 555556666554443
No 364
>KOG4014|consensus
Probab=94.03 E-value=2.2 Score=32.90 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=106.8
Q ss_pred HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----
Q psy16611 131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS----- 200 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----- 200 (341)
-+.+|++|..+|+.--..+. .+...+.+|..+.. .+++..|++.|..+-. .+.+.+..++|.++..-
T Consensus 47 i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~ 123 (248)
T KOG4014|consen 47 IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK 123 (248)
T ss_pred HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc
Confidence 35567777777766544332 55666667765552 3578899999988765 56777888888877652
Q ss_pred C--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHH
Q psy16611 201 Q--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 201 ~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 276 (341)
+ +..+|.+++.++-.+. + ..+.++|...|+.-. ++ +....|. .+.. .+..+....+.+.|
T Consensus 124 ~dpd~~Ka~~y~traCdl~--~--~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~---~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 124 ADPDSEKAERYMTRACDLE--D--GEACFLLSTMYMGGK--EK-------FKTNAPGEGKPLD---RAELGSLSKDMDKA 187 (248)
T ss_pred CCCCcHHHHHHHHHhccCC--C--chHHHHHHHHHhccc--hh-------hcccCCCCCCCcc---hhhhhhhhHhHHHH
Confidence 2 3678999999998774 3 567777776665432 11 1212231 1111 13344455778888
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNLA----GDLQESYNIVKKSLDL 320 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~ 320 (341)
.++--++.++. ++.+..++...|..- .+-++|..+-.++.++
T Consensus 188 ~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 188 LQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 88888887764 455666666666542 3567777777777765
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.96 E-value=0.1 Score=25.84 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=4.7
Q ss_pred HHHHHHhCCHHHH
Q psy16611 264 AVLEAREGHIERA 276 (341)
Q Consensus 264 ~~~~~~~g~~~~A 276 (341)
|.++...|++++|
T Consensus 8 a~~~~~~G~~~eA 20 (26)
T PF07721_consen 8 ARALLAQGDPDEA 20 (26)
T ss_pred HHHHHHcCCHHHH
Confidence 3333333333333
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.92 E-value=0.85 Score=29.59 Aligned_cols=59 Identities=8% Similarity=-0.038 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPYLYE---THYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
.-|.-++...+.++|+..++++++..++... ++-.+..+|...|+|.+++.+--+=+++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566888999999999999998877665 4455667789999999998876555443
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.87 E-value=0.32 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.+..+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 368
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.83 E-value=0.35 Score=41.96 Aligned_cols=88 Identities=10% Similarity=-0.029 Sum_probs=57.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDATC------------------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA 187 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 187 (341)
+..++++++|..|.--|..+++...+- ..+-..+..||..+++.+-|+....+.+.++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 456677777777777777777765320 01123566677777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERA 213 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~a 213 (341)
.-+..-|.++..+.+|.+|...+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76767777777777776666544433
No 369
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.65 E-value=0.36 Score=40.46 Aligned_cols=62 Identities=23% Similarity=0.139 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
|+.+|.+|+.+.|.+...++.+|.++...|+.=+|+-+|-+++-.....+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997665567788999988887
No 370
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.58 E-value=4.1 Score=34.62 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHHHhhc-cccchHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 202 QYDMVVTCFERALSLA-LNENAADVWYNISHVAI-----GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
-.+++...+.+++... |.. ....-.++-++. ..-+|..-..+|.-.....|+ +.+-.|.+.+..+..-.+.
T Consensus 271 lI~eg~all~rA~~~~~pGP--YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRRPGP--YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHh
Confidence 3567777777776653 333 333333444432 234666666667666666654 5555666777766666777
Q ss_pred HHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 276 ASTYLQAAAAS--SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 276 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
++...+..... -..+...+...|..+.+.|+.++|...|++++.+.++..+..+...++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~l 411 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDRL 411 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 77777766654 223445677889999999999999999999999999998888777766543
No 371
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.52 E-value=0.14 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVK 315 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~ 315 (341)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
No 372
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.50 E-value=0.21 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
++..||.+-...++|++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.13 E-value=0.51 Score=39.00 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
.+...+..|...|.+.+|+++.++++.++|-+...+..+..++...|+--.+++.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334456777888888899999999988888888888888888888888777777776653
No 374
>KOG0686|consensus
Probab=92.92 E-value=1.1 Score=38.94 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSID--------SSHGL 258 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 258 (341)
.++..+|..|...|+++.|+.+|-++-...... .....|.++..+-...|+|..-..+-.++...- .-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 467789999999999999999999977665444 346788888899999999998888887776541 01134
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
+.+.-|.+...+++|+.|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56667777888889999999886654
No 375
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.92 E-value=2.8 Score=30.87 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=14.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16611 132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 164 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 164 (341)
.+.....+.+++.++..++.+...+..+..+|.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 344444444444444444434444444444443
No 376
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=3.3 Score=34.16 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=21.8
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGI--SDTRLAIQCLHLALSIDSSHGLSQ 260 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 260 (341)
+.+..+++.+|++ ...|...-.++... .++..-+...++.+..++.+...|
T Consensus 95 d~~~~~lk~~PK~--YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W 147 (328)
T COG5536 95 DFLDEALKDNPKN--YQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVW 147 (328)
T ss_pred HHHHHHHhcCCch--hhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccccee
Confidence 3344444444444 44444333333222 334444444445555555444443
No 377
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.76 E-value=0.22 Score=27.29 Aligned_cols=28 Identities=14% Similarity=0.440 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
++..||.+-...++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.74 E-value=2.9 Score=34.81 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
..+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.+++.|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455667788899999999999999999999999999999999999999888888887754
No 379
>KOG0546|consensus
Probab=92.71 E-value=0.21 Score=42.28 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=66.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
..+...+..++++.|..-|.+++..-... ...+..+... +.-.+...-.....+++.+-...+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~--------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~ 289 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQ--------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVK 289 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhccc--------------cccccccccc---ccccccccccccccchHHhccccc
Confidence 45666778888888888888876642100 0000000000 000011111223334555555566
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+....
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 6666666555555555555556666666666666666666666666666666655544444433
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.63 E-value=0.89 Score=40.01 Aligned_cols=27 Identities=4% Similarity=-0.184 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
.+++.+|.+|..+++|.+|+..|...+
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544
No 381
>KOG2114|consensus
Probab=92.56 E-value=2.4 Score=40.40 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q psy16611 227 YNISHVAIGISDTRLAIQC 245 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~ 245 (341)
..|-.+|.++++.++-.++
T Consensus 435 tlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHhcchHHHHHH
Confidence 3445566666665544333
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.56 E-value=5.3 Score=33.17 Aligned_cols=143 Identities=8% Similarity=-0.036 Sum_probs=66.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcCChh-HHHHHHHHHHhhcc----ccchHHHHH
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYD-MVVTCFERALSLAL----NENAADVWY 227 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~----~~~~~~~~~ 227 (341)
.-+..+.+.|++..|.++..-.++. .+.+.....++..++.....-+ +-..+.+++++-.. ....+..+.
T Consensus 15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~ 94 (260)
T PF04190_consen 15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH 94 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 3356677777777666555444332 2333444455555555543322 34445555555441 003356666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHc
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN--LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA-VISNLA 304 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~ 304 (341)
.+|..+.+.|++.+|..+|-.. +++..... +-. .....-.|...+.+...+ .-|...
T Consensus 95 ~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~---------------~~~~~~~~~e~dlfi~RaVL~yL~l 154 (260)
T PF04190_consen 95 LLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLE---------------EWSTKGYPSEADLFIARAVLQYLCL 154 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHH---------------HHHHHTSS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHH---------------HHHHhcCCcchhHHHHHHHHHHHHh
Confidence 6777777666666665554322 11111110 111 111122344444443333 346777
Q ss_pred CCHHHHHHHHHHHHhc
Q psy16611 305 GDLQESYNIVKKSLDL 320 (341)
Q Consensus 305 g~~~~A~~~~~~al~~ 320 (341)
++...|...+....+.
T Consensus 155 ~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 155 GNLRDANELFDTFTSK 170 (260)
T ss_dssp TBHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888877766655
No 383
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.17 E-value=5.6 Score=32.49 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=26.3
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNH 163 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~ 163 (341)
.+.++.+..+.|+|++.+.++++++..++. +.+-...++.+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 345567777778888888888888777654 233444455544
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.95 E-value=4.5 Score=35.71 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=47.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHhcCChHHHHHHHHHHHHc
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCME--AIACI--GVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~al~~ 182 (341)
.-....+..++..++|..|...+..+...-|.... .+..+ |..++..-++++|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555677888999999999999999986343333 33333 45556788999999999998765
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.87 E-value=2.5 Score=34.84 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
.+...+|..|+..|++++|+.+|+.+....... ..+...+..|+...|+.+..+...-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566777777777777777777765443211 235556777777777777666655443
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.80 E-value=0.66 Score=26.43 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
+.++.+|..+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 387
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.65 E-value=7.8 Score=33.05 Aligned_cols=159 Identities=14% Similarity=0.045 Sum_probs=109.7
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------------------------ChHHHHHHHHHHHHcCC-CcH
Q psy16611 135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYND--------------------------QPEVALLFYRRLLQMGL-YNA 187 (341)
Q Consensus 135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------------------------~~~~A~~~~~~al~~~p-~~~ 187 (341)
-++|+.+-.-...+.|..++++-.++...++.. -.+++...+.+++.... .-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 467788777788889999998888777766531 15677788888876543 333
Q ss_pred HHHHHHHHHHHH-----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHH
Q psy16611 188 ELFNNLALCCFY-----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI--DSSHGLSQ 260 (341)
Q Consensus 188 ~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 260 (341)
...-.++-++.. .-+|..-..+|.-...+.|+. .+-.|.+....+..-...++...+..... -......+
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP---vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP---VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC---eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 333334444433 346777777788777777775 45556666666655667777776665554 23344566
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 296 (341)
...|..+.++|+.++|...|++++.+.++..+..+.
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 778999999999999999999999998877664443
No 388
>KOG0546|consensus
Probab=91.53 E-value=0.37 Score=40.84 Aligned_cols=130 Identities=15% Similarity=0.028 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc
Q psy16611 157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGI 236 (341)
Q Consensus 157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 236 (341)
-..+.-.++.++++.|..-|.+++..... ....+..+... +...+... ......+++.+-...
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~------------~s~~~~~e~~~---~~~~~~~~--r~~~~~n~~~~~lk~ 288 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSE------------QSRDREKEQEN---RIPPLREL--RFSIRRNLAAVGLKV 288 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcc------------ccccccccccc---cccccccc--ccccccchHHhcccc
Confidence 34677788999999999999988764221 00011111111 11111222 255666788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 237 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 237 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
+.+..|+.....+++.++....+++..+..+....++++|++.++.+....|++..+...+..+-..
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 8888888888888888888888899999999999999999999999998888887765555444333
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.51 E-value=13 Score=35.43 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=41.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
..+....++++.+...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33445778888777777665433344556788899998889999999999999743
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.42 E-value=0.36 Score=27.48 Aligned_cols=26 Identities=12% Similarity=0.370 Sum_probs=18.1
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILK 147 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 147 (341)
.++++..|...|+.+.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35667777777777777777777764
No 391
>KOG1463|consensus
Probab=91.35 E-value=8.4 Score=32.89 Aligned_cols=164 Identities=11% Similarity=-0.027 Sum_probs=100.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcH--HHHH
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-----GLYNA--ELFN 191 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~--~~~~ 191 (341)
+...|+..++|.+|+......+..- +.-.+++..=...|+...+..+|...+..+-.. .|... ..-.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 4477888888888888777765431 112345555666777777777777766655432 12211 1222
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLA--IQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
.-|..+....+|.-|..+|-++++-...- .....+..+-.|-...+..++- +-.-+.+++....+..+....+.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence 33555666678888888888887753221 1123344444455555666553 33445566666777778887777
Q ss_pred HHHH--hCCHHHHHHHHHHHHHhCC
Q psy16611 266 LEAR--EGHIERASTYLQAAAASSP 288 (341)
Q Consensus 266 ~~~~--~g~~~~A~~~~~~al~~~p 288 (341)
++.+ +.+|+.|+..|+.-+..+|
T Consensus 294 A~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 7744 4578888888887776655
No 392
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.17 E-value=8.8 Score=32.78 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHH
Q psy16611 138 SVKYYKLILKRDATCMEAIA---CIGVNHFYNDQPEVALLFYRRL 179 (341)
Q Consensus 138 A~~~~~~~l~~~~~~~~~~~---~la~~~~~~~~~~~A~~~~~~a 179 (341)
+...|++..+.-|+.....+ ..|.+++..++|.++...|..+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence 45667777777766544432 5688888888888887777654
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.05 E-value=6.8 Score=31.27 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=48.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 256 (341)
..-+.+.+..++++...+.-++-+|.+ ......+-.++.-.|+|++|...++-+-.+.|+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtd--a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTD--AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcc--ccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345567788888888888888888888 7777777788888888888888888888887765
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.83 E-value=9.6 Score=33.71 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcH--HHHHHHH--HHHHHcCChhHHHHHHHHHHhh
Q psy16611 157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNA--ELFNNLA--LCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la--~~~~~~~~~~~A~~~~~~al~~ 216 (341)
...+...+..++|..|...+......-|... ..+..+. ..++..-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566677789999999999999988533333 3444444 4455678899999999998765
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.67 E-value=0.91 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 306 DLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 306 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
+.+.+...|++++...|.+...|.....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 3444555555555555555555444433
No 396
>KOG1463|consensus
Probab=90.54 E-value=10 Score=32.43 Aligned_cols=165 Identities=11% Similarity=-0.040 Sum_probs=106.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cC--CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-----cccchHHHH
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQ----MG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVW 226 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~ 226 (341)
.+...|...++|.+|+......++ ++ +.-.+++..-...|+...+..+|...+..+-... |.......=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 577788888999999888766654 22 2234566667778888888888888777664431 111112222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHHHhCCHHHHHHH--HHHHHHhCCCchhHHHHHH
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALSIDS---SHGLS---QNNLAVLEAREGHIERASTY--LQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~---~~~l~~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~l~ 298 (341)
..=|..+....+|.-|..+|-++++-.. ++..+ +..+-.+-...+..++.-.. -+.+++....+.++....+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 3335566666899999999999987542 22333 33334444556666664443 3556666667777888888
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhcCC
Q psy16611 299 VISNLA--GDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 299 ~~~~~~--g~~~~A~~~~~~al~~~p 322 (341)
.++.+. .+|+.|+..|++-+..+|
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 887653 578888888887776665
No 397
>PF13041 PPR_2: PPR repeat family
Probab=90.48 E-value=1.7 Score=25.27 Aligned_cols=28 Identities=4% Similarity=-0.102 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
..|..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444444555555555555555444
No 398
>PF12854 PPR_1: PPR repeat
Probab=90.45 E-value=0.9 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 290 LYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
+...|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344666677777777777777776664
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=9.4 Score=31.83 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh----C--CCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAAS----S--PYLYETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
+.+...+++.|+|.+|+......+.- + +.-..++..-..+|....+..++...+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 34555666666666666665554421 1 223345555556666666655555554443
No 400
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.35 E-value=13 Score=33.35 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=25.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDA 150 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 150 (341)
.....+|..++..++|+-|...|+.+.+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 3344588999999999999999999877554
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.27 E-value=1.1 Score=22.97 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 272 HIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
+.+.+...|++++...|.+...|..++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555554443
No 402
>PF13041 PPR_2: PPR repeat family
Probab=90.21 E-value=1.9 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555556666666666666666666543
No 403
>KOG4014|consensus
Probab=90.18 E-value=7.2 Score=30.15 Aligned_cols=155 Identities=11% Similarity=0.095 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhhccccchH
Q psy16611 150 ATCMEAIACIGVNHF-YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-----SQQYDMVVTCFERALSLALNENAA 223 (341)
Q Consensus 150 ~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~ 223 (341)
...++..+.||..+. -+.+|++|.+.|+.--..+. .+...+.+|..++. .+++..|+..|..+-.. +. +
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~--~ 105 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NI--P 105 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CC--H
Confidence 346777788887665 35688889888887554332 34556666665543 45788999999998774 44 7
Q ss_pred HHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHH
Q psy16611 224 DVWYNISHVAIGI-----S--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296 (341)
Q Consensus 224 ~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 296 (341)
.+..++|.++..- + +..+|++++.++..+. +..+.++|...|+.-. ++ +....|..... ..
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~ 173 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LD 173 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cc
Confidence 7888888877542 2 3678999999987664 4566677766664432 22 12223311110 01
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 297 QAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
.+..+.-..+.+.|.++-.++.++.
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 2233334567777777777776663
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.08 E-value=4.4 Score=33.39 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~a 249 (341)
..+|..|+..|++++|+++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444444444
No 405
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.61 E-value=16 Score=33.24 Aligned_cols=167 Identities=9% Similarity=-0.031 Sum_probs=105.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C-----CcHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-L-----YNAELFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p-----~~~~~~~~l 193 (341)
.+++.++.+|.+. ..+.-..++++.++.+-++...-..|+..|.+ ++.+++..+|.+++... | .--++|..+
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL 177 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL 177 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 6677888888888 56777888898888888888888888888877 88899999999987542 2 112233333
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR---- 269 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---- 269 (341)
-.. -..+.+.-+....+.-..........++..+-.-|....++++|+..+...++.+..+..+.-++...+..
T Consensus 178 ~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~ 255 (711)
T COG1747 178 PEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRG 255 (711)
T ss_pred HHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhcc
Confidence 221 12334433333333322221111122333333555667889999999998888887776655555444433
Q ss_pred ----------------hCCHHHHHHHHHHHHHhCCCc
Q psy16611 270 ----------------EGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 270 ----------------~g~~~~A~~~~~~al~~~p~~ 290 (341)
-.++.+++.-|++.+..+..+
T Consensus 256 ~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 256 HSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred chhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 456777888888877665443
No 406
>KOG1538|consensus
Probab=89.59 E-value=5.7 Score=36.94 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=29.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
..+...++|++|....++--+.- ..+++-.|..+.+..+|++|.+.|.++
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34445566666665555433222 345666676667777777776666554
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.44 E-value=6.3 Score=34.86 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAAS---------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
...+..++..+|+|..|++.++.. ++ .+-+...++.+|.+|..+++|.+|++.|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889999998887653 22 223455889999999999999999999998873
No 408
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.04 E-value=5.7 Score=31.68 Aligned_cols=63 Identities=19% Similarity=0.047 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
..-+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-.+.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344567788888988888888888888888888888888889999999988888888887643
No 409
>KOG4151|consensus
Probab=88.92 E-value=2.4 Score=40.05 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=70.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAI--GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
.-++.++..+++..+.--|..++.+-|.+ .......+.+.+++ ..|+|.+++.-..-++...|....++...+..|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 34677777778888777777777777644 23444555665554 356777777777777777777777777777777
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYET 293 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~ 293 (341)
...++++-|++.+.-.....|.+..+
T Consensus 138 ~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 138 EALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 77777777777766666667766543
No 410
>KOG2114|consensus
Probab=88.81 E-value=5 Score=38.37 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=37.1
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 182 (341)
.++.+..-|+-|+.+.+.- ..+++ -.+.+...|..++..|++++|...|.+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4455566666666655442 11222 2455678888999999999999999988764
No 411
>PF12854 PPR_1: PPR repeat
Probab=88.79 E-value=1.5 Score=23.27 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQA 282 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (341)
..+|..+...|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555555555555555555543
No 412
>KOG0687|consensus
Probab=88.65 E-value=13 Score=31.64 Aligned_cols=101 Identities=10% Similarity=-0.084 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADV 225 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~ 225 (341)
.+++..++..|.+.|+-+.|++.+.+..+..- +-......+|..|....-..+.++..+..++...+. ..-..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 57889999999999999999999888765421 122334566777766655556666656666554443 11233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
....|.-.+...+|.+|-..|-..+...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3445666677789999999998887654
No 413
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.60 E-value=3.1 Score=26.89 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
...+.-+-..|++.+|+.+|++++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444444455555555554443
No 414
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=88.51 E-value=6.6 Score=34.53 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 213 (341)
.-+|+-+++.++...|.+......+..+|...|-...|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 456777778888888888888888888888888888888887553
No 415
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.14 E-value=19 Score=32.31 Aligned_cols=154 Identities=19% Similarity=0.056 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCh-------hHHHHHHHHHHhhccc---
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQY-------DMVVTCFERALSLALN--- 219 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~~~--- 219 (341)
...+|..++..++|+-|...|+.+.+...++. .+....|.+++..+.. ++...+++.++...-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 44799999999999999999999887543321 2333444555554422 2333344443332111
Q ss_pred ------cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC--C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 220 ------ENAADVWYNISHVAIGISDTRLAIQCLHLALSI--DS--S---HGLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 220 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
..........+.++...+.+.+|...+-++... .. . .+..+-..+.++ ..+..
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~ 356 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS 356 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence 012445666677778888887777766665544 21 1 222333344444 11111
Q ss_pred -CC--C---chh--HH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 287 -SP--Y---LYE--TH-YNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 287 -~p--~---~~~--~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
.| . .-. .| ..-|.-|.+.|+...|..+|.+++.....
T Consensus 357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 11 1 001 22 23456789999999999999999987654
No 416
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.97 E-value=8.8 Score=28.20 Aligned_cols=121 Identities=11% Similarity=-0.048 Sum_probs=76.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH
Q psy16611 162 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241 (341)
Q Consensus 162 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 241 (341)
.+...+.....+.+++..+..++.+...+..+..+|... +..+.++.++. .... . -.-..+..+.+.+-+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~--y-d~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNH--Y-DIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----cccc--C-CHHHHHHHHHHcCcHHH
Confidence 344567889999999999998888888888999888765 45566666663 1111 1 11223444456666777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 242 AIQCLHLALSIDSSHGLSQNNLAVLEA-REGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
+...|.+. .....+ -.++. ..++++.|++++.+ ..+++.|..++..+..
T Consensus 88 ~~~l~~k~----~~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 88 AVELYKKD----GNFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHhh----cCHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77766653 111111 12222 23788999998876 3467788887776653
No 417
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=15 Score=30.49 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c----CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--CChhHH
Q psy16611 137 MSVKYYKLILKRDATCMEAIACIGVNHFY----N----DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS--QQYDMV 206 (341)
Q Consensus 137 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A 206 (341)
.|++.-...+..+|..-.+|...-.+... . .-++.-+.++..+++.+|.+..+|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 46666666666677655555544333332 1 2245667788889999999999888777776654 567778
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHH------HhcCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhCC-----
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVA------IGISDTRLAIQCLHLALSIDSSHGLSQNNL---AVLEAREGH----- 272 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~g~----- 272 (341)
..+.++.+..++.+ ...|...-.+. ..-..+..-.++-..++..++.+..+|... -......|+
T Consensus 130 l~itkklld~DsrN--yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk 207 (328)
T COG5536 130 LFITKKLLDSDSRN--YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQK 207 (328)
T ss_pred HHHHHHHhcccccc--cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHH
Confidence 88889999999888 66664433333 344455556777777888899888888776 222333444
Q ss_pred -HHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 273 -IERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 273 -~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
+++-+++.-.++-.+|++..+|..+-.+
T Consensus 208 ~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 208 YLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 4555666666677789888877765444
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=87.23 E-value=14 Score=29.87 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=23.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
..++...|+.++++|++++|+.. +...+.++.+.+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~l 224 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG-VKKDIERLERRL 224 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHH
Confidence 44577889999999999987653 344445555544
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=16 Score=30.47 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=126.3
Q ss_pred hcHHHHHHHcCCchHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCChHHHHHHHH---HHHHc--CCCcHHH
Q psy16611 123 LNLAKIFEGLNNMPMSVKYYKLILKRDAT--------CMEAIACIGVNHFYNDQPEVALLFYR---RLLQM--GLYNAEL 189 (341)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~---~al~~--~p~~~~~ 189 (341)
+.++.-....+++++|+..|.+++..... .......++.+|...|++..-.+... .+... .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45667777889999999999999876221 23456789999999998765443333 33222 1222222
Q ss_pred HHHHHHH-HHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHH
Q psy16611 190 FNNLALC-CFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSHGL 258 (341)
Q Consensus 190 ~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 258 (341)
...+-.- -.....++.-+..+...++..... .....-..+..++++.|.|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 2222222 223455677777777777654333 22334456778889999999999987776532 244456
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCchhHH--HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASS-----PYLYETH--YNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
++..-..+|....+..++...+..+-... |....+. ..-|.....-.+|.-|..+|-++++-.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 77777888888888888888777765432 3222221 123445566678888999988888653
No 420
>KOG0276|consensus
Probab=86.68 E-value=20 Score=33.28 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERA 213 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~a 213 (341)
..-|..||......+++..|.+++.++
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344445555555555555555555444
No 421
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=18 Score=30.31 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADV---WYNISHVAIGISDTRLAIQCLHLALSIDSSHG---LS 259 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 259 (341)
.+++.++|..|.+.++.+.+.+.+.+.+...... ...++ ...+|.+|..+.-.++.++..+..++...+.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4577778888888888887777777776654333 12233 33455555555555566666666665543321 12
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
-...|...+...+|.+|-..+...+....
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 23345555666677777777766665443
No 422
>KOG1920|consensus
Probab=85.92 E-value=9.4 Score=38.17 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
..|+.-+...+++-+|-+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 455556666677766666666554
No 423
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.73 E-value=7.6 Score=34.14 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHL 248 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (341)
.-+|+.+++.++...|.+ ......+..+|...|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n--~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHN--YQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 457777888888888888 88888888888888888888888865
No 424
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.72 E-value=20 Score=30.05 Aligned_cols=123 Identities=10% Similarity=-0.084 Sum_probs=81.0
Q ss_pred cCCchHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHH
Q psy16611 132 LNNMPMSVKYYKLILKRD-AT-----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFY 199 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~ 199 (341)
...-++-++-+.+.++.. .+ -.+++.++|..|.+.++.+.+.++..+.++..-. -...-..+|.+|-.
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 334455555665554432 12 3678999999999999999999998887764321 12234566777766
Q ss_pred cCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16611 200 SQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 254 (341)
+.=..+.++..+..++...+. ..-..-...|...+...+|.+|-..+-..+....
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 666677777777777765544 1122334456666777889999999888876553
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=85.57 E-value=1.7 Score=21.92 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~a 249 (341)
..+-..|.+.|++++|.+.|++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33444444444444444444443
No 426
>KOG4521|consensus
Probab=85.37 E-value=45 Score=33.78 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------C-----------C--c--HHHHHHHHHHHHHcCCh
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------------L-----------Y--N--AELFNNLALCCFYSQQY 203 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------p-----------~--~--~~~~~~la~~~~~~~~~ 203 (341)
....+.+|.+|...|+..+|+.+|.++..-. | . . ...|...-+++...+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 3455677777777777777777777765321 1 0 0 11223334455556667
Q ss_pred hHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHH---
Q psy16611 204 DMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIER--- 275 (341)
Q Consensus 204 ~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~--- 275 (341)
+.+.+.-.+|++.-|++ ..+.....+-+-+..+|.+-+|.+.+ -.+|+. -..+..+-.++++.|+++.
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence 77777777777765544 22444555555566777777775433 334543 2355666777777776543
Q ss_pred ---------HHH-HHHHHHHhCCCchhHHHHHHH-HHHHcCCHHHHHH-HHHHHHhcCC
Q psy16611 276 ---------AST-YLQAAAASSPYLYETHYNQAV-ISNLAGDLQESYN-IVKKSLDLHP 322 (341)
Q Consensus 276 ---------A~~-~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~-~~~~al~~~p 322 (341)
-.. .++.+-...|....-++.+-. .+...+++.+|.. .|+.+..+..
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 222 333444444443333444433 4556677776654 4566665543
No 427
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=85.32 E-value=1.7 Score=21.92 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 294 HYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
|..+...|.+.|++++|...|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555443
No 428
>KOG0687|consensus
Probab=84.33 E-value=25 Score=30.01 Aligned_cols=101 Identities=4% Similarity=-0.060 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLS 259 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 259 (341)
.+++.+.+..|.+.|+-+.|.+.+++..+..-.. ........+|..|....-..+-++..+..++...+. -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 4566677777777777777777766665543222 112233445555554444444444444444433221 112
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
-...|...+...+|.+|...|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2233445555566666666666655443
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.28 E-value=6.2 Score=31.04 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 275 RASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
..++..++.+...| ++.++.+++.++...|+.++|.....++..+.|.
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34445555555556 4566677777777777777777777777777773
No 430
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=83.14 E-value=21 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 307 (341)
+.|...+.++++++|....+...+..+-...|..
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 4555566666666666655555555554444443
No 431
>KOG0276|consensus
Probab=82.97 E-value=13 Score=34.51 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
...++..+..+|-.+ +++++.++. .-.+. +..+.|+++.|.....++ ++..-|..||.+...
T Consensus 617 rt~va~Fle~~g~~e-------~AL~~s~D~---d~rFe---lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKE-------QALELSTDP---DQRFE---LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchH-------hhhhcCCCh---hhhhh---hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh
Confidence 444555555555444 444444443 22222 334667777776655543 456678888888888
Q ss_pred hCCHHHHHHHHHHHHHhC--------CCchhHHH------------HHH-HHHHHcCCHHHHHHHHHHH
Q psy16611 270 EGHIERASTYLQAAAASS--------PYLYETHY------------NQA-VISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~--------p~~~~~~~------------~l~-~~~~~~g~~~~A~~~~~~a 317 (341)
.+++..|.++|.++.... ..+.+.+. +++ .+|...|+++++.+.+...
T Consensus 679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 888888888888874421 12222222 222 2466678888877776654
No 432
>PRK09687 putative lyase; Provisional
Probab=82.20 E-value=29 Score=29.22 Aligned_cols=199 Identities=10% Similarity=-0.073 Sum_probs=119.9
Q ss_pred HhhhcHHHHHHHcCCc----hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCcHHHH
Q psy16611 120 VSRLNLAKIFEGLNNM----PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-----PEVALLFYRRLLQMGLYNAELF 190 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~----~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~al~~~p~~~~~~ 190 (341)
..+...+.++.+.|+. .++...+...+..++ +..+....+..+...+. ...+...+..++.. .++.+.
T Consensus 69 ~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~~~~VR 145 (280)
T PRK09687 69 IERDIGADILSQLGMAKRCQDNVFNILNNLALEDK-SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--KSTNVR 145 (280)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC-CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--CCHHHH
Confidence 3344444556666653 356666666655555 34444444433333321 12334444333322 266777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
+..+..+...++ .+++..+..++.- + + ..+....+..+-..+ +...+...+.+++. ..+..+...-...+.+
T Consensus 146 ~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~--~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 146 FAVAFALSVIND-EAAIPLLINLLKD-P-N--GDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHhcC-C-C--HHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHc
Confidence 777777766665 6788888888863 2 2 334443333333332 24578888888874 3355666666666777
Q ss_pred hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
.|+ ..|+..+-+.++... .....+.++...|.. +|+..+.+.+..+|+..........|
T Consensus 219 ~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 219 RKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred cCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 777 678888888876422 456677788888885 79999999999888665555554444
No 433
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.01 E-value=4.1 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 294 HYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
|..+...|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666677777777777766554
No 434
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.00 E-value=8.7 Score=28.45 Aligned_cols=51 Identities=16% Similarity=-0.008 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 307 (341)
.+.....+......|++.-|.+....++..+|++..+....+.+|.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 455566666677777777777777777777777777777777777666543
No 435
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.96 E-value=14 Score=26.98 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=21.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 235 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
.+|+-++-.+.+....+.+..++..+..+|.+|.+.|+..++-+.+.+|.+
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444444444443334455555555555555555555555555443
No 436
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=81.94 E-value=0.43 Score=44.07 Aligned_cols=167 Identities=12% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH--HcCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHH-HhhccccchHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLL--QMGLY-NAELFNNLALCCFYSQQYDMVVTCFERA-LSLALNENAADVWYNI 229 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~l 229 (341)
......+..+...|++..|...+.+.- .+.+. ........+.+....|++++|+..+... ...-|.......+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 344556677777888888887777665 22222 2344556677777788888888877641 1111111224455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSS-------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
+.++...|++-+|...+-..-.+-++ ...+|..|..+ .. ..+.............|..|+.++.
T Consensus 105 A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l-------~~--~~L~~~~~~~~~~l~GWl~La~i~~ 175 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQL-------PP--EQLQQLRRASEPDLQGWLELALIYR 175 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcC-------CH--HHHHhhhcCCCHHHHHHHHHHHHHH
Confidence 77777777777776655444333221 11222222211 11 0111111112223346777777776
Q ss_pred Hc-CCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 303 LA-GDLQESYNIVKKSLDLHPGHSYSWD 329 (341)
Q Consensus 303 ~~-g~~~~A~~~~~~al~~~p~~~~~~~ 329 (341)
.. .+...-...+..-...+|+|+....
T Consensus 176 ~~~~~p~~l~~al~~Wq~~yP~HPA~~~ 203 (536)
T PF04348_consen 176 QYQQDPAQLKQALNQWQQRYPNHPAAQY 203 (536)
T ss_dssp ----------------------------
T ss_pred hccCCHHHHHHHHHHHHHhCcCCccccc
Confidence 63 3333333344444456676665543
No 437
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=81.86 E-value=3.9 Score=21.04 Aligned_cols=24 Identities=8% Similarity=-0.008 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al 250 (341)
..+-..|.+.|++++|.+.|.+..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444455555555555554443
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.56 E-value=51 Score=31.60 Aligned_cols=188 Identities=9% Similarity=-0.091 Sum_probs=118.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 200 (341)
++..-....+.+.|...+.+......-. ..++..++.-....+...+|..++..+.... .+...+..........
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHc
Confidence 3444445666778888887764444322 2233344444444333667777777655332 2333344444455578
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------C-----C-C--H--
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-------------S-----S-H--G-- 257 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p-----~-~--~-- 257 (341)
++++.+...+...-...... ....+.+|..+...|+.++|...|+++.... | . . .
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~--~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDS 403 (644)
T ss_pred cCHHHHHHHHHhcCHhhccC--HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhh
Confidence 88888777777753333333 7788899999888999999999998874310 0 0 0 0
Q ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 258 ----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 258 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
.-....+..+...|+...|...+..++.. .+..-...++.+....|.++.++....++
T Consensus 404 ~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 404 ALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 01233456677789999999888887764 33456677888888889888887766544
No 439
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=81.37 E-value=27 Score=29.22 Aligned_cols=127 Identities=9% Similarity=0.053 Sum_probs=68.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH---HHhcCCHH----HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV---AIGISDTR----LAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~---~~~~g~~~----~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
..+...++|++--..+.+...........+..+..+.. +....... .-...++.-++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 34556677777777777665543332001111222111 11221111 245556666666777777766666555
Q ss_pred HHhCCHHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 268 AREGHIERASTYLQAAAASSP------YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
... +..+.. -...-|.... .-.+.|...+.+++.++|....+...+-.+...|+
T Consensus 88 ~~~------------Aw~~RG~~~A~~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 88 VHR------------AWDIRGSGYASTVTEAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHH------------HHHHHccchhcccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 332 111111 0112222222 22467999999999999999998888887776654
No 440
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.15 E-value=3 Score=26.95 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=10.3
Q ss_pred cCChHHHHHHHHHHHH
Q psy16611 166 NDQPEVALLFYRRLLQ 181 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~ 181 (341)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4666666666666655
No 441
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=80.47 E-value=40 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=10.2
Q ss_pred HHHHcCChhHHHHHHHHHHhh
Q psy16611 196 CCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~ 216 (341)
.++..++|..|...|.+++..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 344445555555555554444
No 442
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=80.39 E-value=11 Score=26.97 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
..+|...++.+++-.++-.|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 44555556666666666666666543
No 443
>KOG3783|consensus
Probab=80.30 E-value=48 Score=30.44 Aligned_cols=179 Identities=11% Similarity=-0.043 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCChhHHHHHHH
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFE 211 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~ 211 (341)
+...+.+.......|.++.-....+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555555667888888888888888888888889999988877 322 3357788999999999999999999
Q ss_pred HHHhhccccchHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH---hcCCCC-----------------------
Q psy16611 212 RALSLALNENAADVWYNIS-HVAIG--------ISDTRLAIQCLHLAL---SIDSSH----------------------- 256 (341)
Q Consensus 212 ~al~~~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al---~~~p~~----------------------- 256 (341)
...+.+... .-.|..++ .|++. .|+-++|..+++... +..|.+
T Consensus 328 ~L~desdWS--~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 328 LLRDESDWS--HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHhhhhhh--HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 998887665 44444444 34322 234444444433322 221111
Q ss_pred -HH--HHHHHHHHHHH--hCCHHHHHHHHHHHHH---h-CCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 257 -GL--SQNNLAVLEAR--EGHIERASTYLQAAAA---S-SPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 257 -~~--~~~~l~~~~~~--~g~~~~A~~~~~~al~---~-~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
.. -++.++.++.. ....++.. -++..++ . ++++. --++.+|.++..+|+...|..+|..+++
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~ 477 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVE 477 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 11222222211 11222222 1111121 1 11111 1456789999999999999999998884
No 444
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.27 E-value=8.7 Score=28.46 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 273 (341)
.+.....+...+..|++.-|.++.+.++..+|++..+...++.++..+|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 556677777778888888888888888888888888887777777665543
No 445
>KOG2063|consensus
Probab=80.13 E-value=65 Score=31.91 Aligned_cols=163 Identities=11% Similarity=0.043 Sum_probs=88.0
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCcHH-------
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAE------- 188 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~------- 188 (341)
+..|...|...|+.++|++.+.+..... +...+.+-..-..+...+.. +-..++-.=.+..+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 3456688888899999999888887733 22223333333333333333 3334443333333332211
Q ss_pred ------HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh--------cCCHHHHHHH--HHHHHhc
Q psy16611 189 ------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG--------ISDTRLAIQC--LHLALSI 252 (341)
Q Consensus 189 ------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~--~~~al~~ 252 (341)
.-.....-|......+-++.+++.++...... ....+..++..|.. .++-+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-STLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-chHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 00112233456677888888888888776543 13333444444422 1222344444 2222211
Q ss_pred -------CCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 253 -------DSS-------HGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 253 -------~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
+|+ ....|...+.++.++|+.++|+..|-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 121 145677788888899999999988877664
No 446
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.61 E-value=39 Score=29.08 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+.+-+.-+..+.-.|++.++...+..+.-+.|+.
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 4455556666667778888888888888877774
No 447
>KOG4279|consensus
Probab=79.45 E-value=15 Score=34.95 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHH---HcCChhHHHHHHHHHHhhccccch
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE------LFNNLALCCF---YSQQYDMVVTCFERALSLALNENA 222 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~---~~~~~~~A~~~~~~al~~~~~~~~ 222 (341)
+++...++-..|....+|+.-+++.+..- .-|+... +.+..+..+- .-|+-++|+...-.+++..... .
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v-a 277 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV-A 277 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC-C
Confidence 56777788888888888887777765543 3343222 1222232322 2467788888887777764322 2
Q ss_pred HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCC---
Q psy16611 223 ADVWYNISHVAIG---------ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSPY--- 289 (341)
Q Consensus 223 ~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~--- 289 (341)
++.+...|.+|.. .+..+.|+++|+++++..|.... =.+++..+...| .|+...+.-.-.+.++.-
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~Llgr 356 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGR 356 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhc
Confidence 5566666666643 35567889999999998876422 233444444433 233333333333322210
Q ss_pred --c---hhHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 290 --L---YETHYNQAV---ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 290 --~---~~~~~~l~~---~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
. ...|...|. +-.-.+++.+|+..-++..++.|- .|+....+
T Consensus 357 KG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P---~WYLkS~m 406 (1226)
T KOG4279|consen 357 KGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP---VWYLKSTM 406 (1226)
T ss_pred cchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc---eehHHHHH
Confidence 0 001111111 112357888999988888888764 45444443
No 448
>KOG4279|consensus
Probab=79.23 E-value=17 Score=34.69 Aligned_cols=54 Identities=7% Similarity=0.110 Sum_probs=28.5
Q ss_pred cCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCC
Q psy16611 132 LNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFY---------NDQPEVALLFYRRLLQMGLY 185 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~ 185 (341)
.|+-++|+...-.+++.. +-.++.+..-|.+|-. .+..+.|+++|+++.+..|.
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 355556666555555543 2234444444444432 24455666666666666664
No 449
>KOG0128|consensus
Probab=78.35 E-value=69 Score=31.16 Aligned_cols=213 Identities=9% Similarity=0.027 Sum_probs=132.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF---YNDQPEVALLFYRRLLQMGLYNAELFNNLALC 196 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 196 (341)
..+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..++..++...|++++... ++...|...+..
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y 192 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVVNY 192 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHHHH
Confidence 555566677888898888777777777788888888876555433 3366778888888888643 334444443333
Q ss_pred -------HHHcCChhHHHHHHHHHHhhcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----HH
Q psy16611 197 -------CFYSQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL----SQ 260 (341)
Q Consensus 197 -------~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~ 260 (341)
+...++++.-...|.+++..-... .....+..+-..|...-..++-+.++...+... .+.. .|
T Consensus 193 ~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~ 271 (881)
T KOG0128|consen 193 LVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDL 271 (881)
T ss_pred HHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHH
Confidence 344567788888888887753222 224455555666665555567777777777654 2211 11
Q ss_pred HHHH--H-HHHHhCCHHHHHHHHHHH-------HHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 261 NNLA--V-LEAREGHIERASTYLQAA-------AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 261 ~~l~--~-~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
+... . ......+++.|...+.+. +...+.....|..+.......|..-.-...+++++.-.+.+...|..
T Consensus 272 ~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~ 351 (881)
T KOG0128|consen 272 SEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIG 351 (881)
T ss_pred HHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhh
Confidence 1111 1 123344555555554443 33334444467777777888888888888888888887777777766
Q ss_pred HHHH
Q psy16611 331 LRKL 334 (341)
Q Consensus 331 l~~~ 334 (341)
.+..
T Consensus 352 y~~~ 355 (881)
T KOG0128|consen 352 YGVY 355 (881)
T ss_pred hhhh
Confidence 6543
No 450
>KOG0128|consensus
Probab=78.14 E-value=70 Score=31.12 Aligned_cols=152 Identities=11% Similarity=-0.030 Sum_probs=106.8
Q ss_pred CCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HcCChhHHHHH
Q psy16611 133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF---YSQQYDMVVTC 209 (341)
Q Consensus 133 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~ 209 (341)
+.-+.-+.-++.-+.+++.+...+..|..++...|++++-...-..+.++.|..+..|.....-.. ..+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344555666777777788888888899999999999999888888888888988888876654332 24677788888
Q ss_pred HHHHHhhccccchHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhCCHHH
Q psy16611 210 FERALSLALNENAADVWYNISH-------VAIGISDTRLAIQCLHLALSIDSS-------HGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~ 275 (341)
|++++...-. +..|...+. ++...++++.-...|.++++.-.. ....+..+-..|...-..++
T Consensus 173 ~ekal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 173 FEKALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 9998865422 444444433 345557788888899998875322 23455555666666666677
Q ss_pred HHHHHHHHHHhC
Q psy16611 276 ASTYLQAAAASS 287 (341)
Q Consensus 276 A~~~~~~al~~~ 287 (341)
-+.++...+...
T Consensus 250 v~a~~~~el~~~ 261 (881)
T KOG0128|consen 250 VIALFVRELKQP 261 (881)
T ss_pred HHHHHHHHHhcc
Confidence 788888777654
No 451
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=78.10 E-value=7.1 Score=20.04 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
|..+..++.+.|+++.|...|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 452
>KOG0686|consensus
Probab=77.94 E-value=49 Score=29.26 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------ch
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPY--------LY 291 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------~~ 291 (341)
..++..+|.-|...|+++.|++.|-++....... ...+.++..+-...|+|.....+..++...... ..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4578889999999999999999999977665433 556778888888999999888888887664200 11
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
.....-|.+...+++|..|.++|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233445556666779999998887654
No 453
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.64 E-value=5.7 Score=25.69 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=9.2
Q ss_pred cCChhHHHHHHHHHHhh
Q psy16611 200 SQQYDMVVTCFERALSL 216 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~ 216 (341)
.|+|++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555555555555543
No 454
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=77.60 E-value=62 Score=30.22 Aligned_cols=160 Identities=13% Similarity=0.044 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHH------------cCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 170 EVALLFYRRLLQMGLYNA-----ELFNNLALCCFY------------SQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 170 ~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
+++.......-+..|.++ .+|..+...+.. .|+.++|+..+++-..-.+. .......+.+
T Consensus 275 ee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~---~lpi~~~~~l 351 (547)
T PF14929_consen 275 EEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTC---ALPIRLRAHL 351 (547)
T ss_pred HHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCc---cchHHHHHHH
Confidence 344444333334445555 555555555532 27888888887775433322 3333444555
Q ss_pred HHhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH---HHhCCCchhHHHHHHHHHHH-cCC
Q psy16611 233 AIGIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA---AASSPYLYETHYNQAVISNL-AGD 306 (341)
Q Consensus 233 ~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~l~~~~~~-~g~ 306 (341)
+...+ .-..-..+|+.+++.+|........+...+.. ...+...++-. +.+.| ...+|..++.++.+ .++
T Consensus 352 le~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~ 427 (547)
T PF14929_consen 352 LEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP-SHPIWLEFVSCFLKNPSR 427 (547)
T ss_pred HHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHhcccc
Confidence 54444 66777889999999999887776666655544 44455555522 33443 45689999999888 566
Q ss_pred HHHHHHHHHHHH-------hc--CCCCHHHHHHHHHHHH
Q psy16611 307 LQESYNIVKKSL-------DL--HPGHSYSWDILRKLEQ 336 (341)
Q Consensus 307 ~~~A~~~~~~al-------~~--~p~~~~~~~~l~~~~~ 336 (341)
++.-.+..++++ .. .-.+..+|..+...-.
T Consensus 428 ~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 428 FEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred ccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 654445555554 22 2345667777755543
No 455
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=75.84 E-value=41 Score=30.13 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 299 VISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
...++.++|.-|..+.++.+++.|....+.
T Consensus 308 ~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 308 SQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 345667888888888888888888775443
No 456
>KOG2062|consensus
Probab=75.69 E-value=67 Score=30.88 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---HHcCCCc----------HHHHHHHHHHHHHcCC-----hhHHHHHH
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRL---LQMGLYN----------AELFNNLALCCFYSQQ-----YDMVVTCF 210 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p~~----------~~~~~~la~~~~~~~~-----~~~A~~~~ 210 (341)
.|++..+-.....+|+.+|+|++|+++.-.+ +..++++ .+.+...+.-.+..-. -+.-....
T Consensus 55 F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv 134 (929)
T KOG2062|consen 55 FPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIV 134 (929)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Q ss_pred HHHHhhccccchHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 211 ERALSLALNENAADVWYNISHVA--IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 211 ~~al~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
++.+...-.+ .+.+..+|..+ .+.+-+++| .++.+......-+.+-.+..-..+-+--.+.+...++..-
T Consensus 135 ~rmi~kcl~d--~e~~~aiGia~E~~rld~ie~A------il~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~ 206 (929)
T KOG2062|consen 135 ERMIQKCLDD--NEYKQAIGIAFETRRLDIIEEA------ILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYL 206 (929)
T ss_pred HHHHHHhhhh--hHHHHHHhHHhhhhhHHHHHHH------hccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q ss_pred Cchh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 289 YLYE-THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 289 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
+-+. -++.++.||..+.+.+.+.+.+++.++ .++....+.++
T Consensus 207 ~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~--e~~~llayQIA 249 (929)
T KOG2062|consen 207 KLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK--EDDLLLAYQIA 249 (929)
T ss_pred cCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh--cchhhhHHHHH
No 457
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.52 E-value=22 Score=28.83 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=16.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCCc
Q psy16611 269 REGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 269 ~~g~~~~A~~~~~~al~~~p~~ 290 (341)
..++...|+.+++++++++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3457778888888888888764
No 458
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.22 E-value=47 Score=27.64 Aligned_cols=92 Identities=16% Similarity=0.030 Sum_probs=55.6
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHcC------CCcHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKR-----DATCMEAIACIGVNHFYNDQPE-VALLFYRRLLQMG------LYNAEL 189 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~------p~~~~~ 189 (341)
.+.-+..+.+.|++..|.++..-.++. .+.+......+..+....+.-+ +-.++.+++++.. -.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 334456777788887777665555443 2334445566777766665433 3444555666543 136789
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERA 213 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~a 213 (341)
+..+|..+++.+++.+|..+|-..
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHhhccHHHHHHHHHhc
Confidence 999999999999999999887543
No 459
>KOG1920|consensus
Probab=75.14 E-value=41 Score=34.01 Aligned_cols=18 Identities=6% Similarity=-0.291 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHHHHHHHH
Q psy16611 229 ISHVAIGISDTRLAIQCL 246 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~ 246 (341)
.|.-+...+.+++|.-.|
T Consensus 945 ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 333333444444443333
No 460
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=74.92 E-value=16 Score=26.23 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=35.8
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATC---------------MEAIACIGVNHFYNDQPEVALLFYRRL 179 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (341)
+..+|...++.+++-.++-.|++++....+- .....++|..+..+|+.+-.+++++-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4456677777888888888888876542210 112346666666666666666666544
No 461
>KOG4151|consensus
Probab=74.51 E-value=14 Score=35.23 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=85.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHH--cCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFY--SQQYDMVVTCFERALSLALNENAADVWYNISH 231 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 231 (341)
.-+..+++.+++..+..-|..++.+-|.+ .....+.+.++.. .++|..++.-..-++...|.. ..+++..+.
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i--~~~Ll~r~~ 135 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI--SKALLKRAR 135 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH--HHHHhhhhh
Confidence 45788888999999988888888887743 3445566666665 578999999999999999998 889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
+|...+.++-|++.+.-.....|.+..........+
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 999999999999998888888898865544333333
No 462
>KOG2063|consensus
Probab=74.28 E-value=96 Score=30.81 Aligned_cols=164 Identities=16% Similarity=0.085 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhhccccc-----h--
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMG----LYNAELFNNLALCCFYSQQY--DMVVTCFERALSLALNEN-----A-- 222 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~-----~-- 222 (341)
+..|+..|...|+.++|++.+.+...-. +...+.+-.+-..+...+.. +-..++-.-.++.+|... .
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6689999999999999999999988733 33333333333333333433 444444444444444430 0
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh--------CCHHHHHHH--HHHHHH--
Q psy16611 223 A----DVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLEARE--------GHIERASTY--LQAAAA-- 285 (341)
Q Consensus 223 ~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~--------g~~~~A~~~--~~~al~-- 285 (341)
. ..-.....-|......+-++.+++.++..... ....+..+...|.+. ++-+++.+. .++...
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 0 00111222345667788899999999887655 334444444444322 222334443 222221
Q ss_pred -h----CCC-------chhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 286 -S----SPY-------LYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 286 -~----~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
. +|+ ....|...+.++.++|+.++|+..|-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 121 123667788888899999999888877665
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.21 E-value=13 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 254 (341)
+.++.+++.++...|+.++|....+++....|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444455555555555555555555554444
No 464
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.14 E-value=7.7 Score=25.18 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=9.3
Q ss_pred hcCChHHHHHHHHHHHH
Q psy16611 165 YNDQPEVALLFYRRLLQ 181 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al~ 181 (341)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34556666555555543
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.09 E-value=33 Score=24.85 Aligned_cols=114 Identities=7% Similarity=-0.057 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCcHHH-----HHHHHHHHHHcCC
Q psy16611 135 MPMSVKYYKLILKRDA---TCMEAIACIGVNHFYN----DQPEVALLFYRRLLQMGLYNAEL-----FNNLALCCFYSQQ 202 (341)
Q Consensus 135 ~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~~~~ 202 (341)
.++-...|+..+.... +..+.|.......... +....-...+++++....++... +..+=..|...-+
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
.+.++|..+....-....+..|...|..+...|++++|.+.|+.++
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 466
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=73.05 E-value=51 Score=27.09 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=39.5
Q ss_pred hcHHHHHHHcCCchHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHh-cCChHHHHHHHHH
Q psy16611 123 LNLAKIFEGLNNMPMSVKYYKLILKR-DA--TCMEAIACIGVNHFY-NDQPEVALLFYRR 178 (341)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~l~~-~~--~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 178 (341)
+.++.+..+.++|++.+.+.+++++. ++ -+.+-...+..+|-. .|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 34667788889999999999998886 43 355666677777653 3666666666554
No 467
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=71.58 E-value=1.3 Score=41.08 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHH--hhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 173 LLFYRRLLQMGL-YNAELFNNLALCCFYSQQYDMVVTCFERAL--SLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 173 ~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (341)
..++.++-...+ .........+..+...|++..|...+.+.- .+.+.. ........+.+....|++++|+..+...
T Consensus 9 ~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 9 EQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-QARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-HHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 334444433333 233445556677778888888887777665 222222 2445566677777778888888777641
Q ss_pred --HhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 250 --LSIDS-SHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 250 --l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..+.+ .....+...+.++...|++-+|...+-..-.
T Consensus 88 ~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 88 DLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ---------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11111 1133445566777777777776666554433
No 468
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.55 E-value=38 Score=24.90 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
...|+-++-.+.+.........++..+..+|.+|.+.|+..++-+.+.+|.+.
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34445554445555544433444555556666666666666666665555543
No 469
>KOG2561|consensus
Probab=71.37 E-value=28 Score=31.01 Aligned_cols=96 Identities=16% Similarity=0.019 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHcCCh----------hHHHHHHHHHH
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQ-----------MGLYNAELFNNLALCCFYSQQY----------DMVVTCFERAL 214 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al 214 (341)
++..|.+.+....|++|+.++-.+-+ .-.+.+.....+.+||+...+. ..|...|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 34455666666677777666654432 2223333344556677665542 22333333332
Q ss_pred hh------------cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 215 SL------------ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 215 ~~------------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
.. .|.. .....+..-|.+.+.+|+-++|.++++.+..
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11 1111 1223455668888888999999888888754
No 470
>PRK12798 chemotaxis protein; Reviewed
Probab=71.36 E-value=75 Score=28.31 Aligned_cols=192 Identities=13% Similarity=0.024 Sum_probs=113.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcHHHHHHHHH-HHHHcCC
Q psy16611 126 AKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYNAELFNNLAL-CCFYSQQ 202 (341)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~~~ 202 (341)
+.+|...|--.+.++ .++..+.. +.+.-..-|..-+-.|+..++.+.+...-.. .|.....+..|.. ..+...+
T Consensus 87 a~iy~lSGGnP~vlr---~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 87 ALIYLLSGGNPATLR---KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHhhHhcCCCHHHHH---HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 345544444444333 33444432 4445555566666778888888877654322 2222223333332 3445678
Q ss_pred hhHHHHHHHHHHhhccccchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhCCHHHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAAD-VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL---SQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 278 (341)
..+|+..|+.+--..|....-+ ++..-..+..+.|+.++...+-.+.+.....++. ++..+.....+.++-. -..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~ 242 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDA 242 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHH
Confidence 8899999999888888873333 3333344456788888888888887776655543 3444444444444222 123
Q ss_pred HHHHHHHh-CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 279 YLQAAAAS-SPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 279 ~~~~al~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
.+...+.. +|.. ...|..++..-.-.|+.+-|...-++++.+.
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 35555543 3332 3477778888888888888888888888775
No 471
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=71.29 E-value=10 Score=24.80 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHH
Q psy16611 271 GHIERASTYLQAAAA 285 (341)
Q Consensus 271 g~~~~A~~~~~~al~ 285 (341)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 472
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=70.64 E-value=25 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
...|.-+-..|+|++|+.+|.++++
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344445555555555555555543
No 473
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.73 E-value=60 Score=30.43 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=55.1
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
+....+.+....+.-+.-.... ....+..+..+-..+..++|-.+|+..+..+|+ ..++..+.-+.+.|-..+|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALT--SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchh--HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 3445555555555544433333 556666777777888888888888888888877 566777777788888888877
Q ss_pred HHH
Q psy16611 279 YLQ 281 (341)
Q Consensus 279 ~~~ 281 (341)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 776
No 474
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.59 E-value=17 Score=23.52 Aligned_cols=25 Identities=16% Similarity=-0.031 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
+...|.-+-..|++.+|+.+|++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344444455666666666666554
No 475
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=69.19 E-value=36 Score=24.64 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLH 247 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (341)
..++|..+....-....+..|...|..+...|++.+|.+.|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444455444433333225555556666666666666666554
No 476
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.14 E-value=1.1e+02 Score=29.28 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=16.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 301 SNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
++..|++++|++.+++ +.+-|.+..
T Consensus 515 ~~~~g~~~~AL~~i~~-L~liP~~~~ 539 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEK-LDLIPLDPS 539 (613)
T ss_dssp HHHTT-HHHHHHHHHH-TT-S-S-HH
T ss_pred HHHcCCHHHHHHHHHh-CCCCCCCHH
Confidence 5678999999998886 557776544
No 477
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=68.79 E-value=74 Score=27.17 Aligned_cols=156 Identities=13% Similarity=-0.044 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----ccccchHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL----ALNENAADVWYNI 229 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~l 229 (341)
+....+-..+ ..+++.+.++..++.+..+|--.+.++..+.++.+.| ++.+....+..+.. .|.-
T Consensus 101 d~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L--------- 169 (301)
T TIGR03362 101 DRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGL--------- 169 (301)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcCh---------
Confidence 3343444444 5677889999999999999988899999999999999 45655555544433 2221
Q ss_pred HHHHHhcCCH---HHHHHHHHHHHh-----------cCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---
Q psy16611 230 SHVAIGISDT---RLAIQCLHLALS-----------IDS--SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--- 290 (341)
Q Consensus 230 a~~~~~~g~~---~~A~~~~~~al~-----------~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 290 (341)
-.+.+..|.. ++....+..... ..+ .+......-+..+...+..+.|+..++..+...+..
T Consensus 170 ~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~r 249 (301)
T TIGR03362 170 LELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRER 249 (301)
T ss_pred hhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHH
Confidence 1111111110 111111111100 001 112222334667788899999999999866543322
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 291 YETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
......++.++...|.++-|...|.+..+.
T Consensus 250 f~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 250 FHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 225567889999999999999999888754
No 478
>KOG0889|consensus
Probab=68.38 E-value=1.5e+02 Score=34.38 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
++.+...|..+.+.|+.++|-..|..|+.++-..+.+|..-|...
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555566666666666666666666666655555555555443
No 479
>KOG1811|consensus
Probab=67.08 E-value=1.1e+02 Score=28.68 Aligned_cols=87 Identities=10% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh--CCH
Q psy16611 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLEARE--GHI 273 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~--g~~ 273 (341)
+.....|..|+....+. .-+. ..+|...|.++.+.+++..|.+-|+++++.... .+++.+.+...-.-- .+.
T Consensus 566 Lie~ErYqlaV~mckKc---~iD~--f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dV 640 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKC---GIDT--FGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDV 640 (1141)
T ss_pred HHHHHHHHHHHHHHhhc---CCCc--ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchH
Confidence 33444555555555543 2333 678999999999999999999999999988643 355555544332111 245
Q ss_pred HHHHHHHHHHHHhCC
Q psy16611 274 ERASTYLQAAAASSP 288 (341)
Q Consensus 274 ~~A~~~~~~al~~~p 288 (341)
....++|+...+-.|
T Consensus 641 q~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 641 QDVREMLDHLAKPAP 655 (1141)
T ss_pred HHHHHHHHHhccCCc
Confidence 556666666554433
No 480
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=65.24 E-value=50 Score=23.92 Aligned_cols=29 Identities=14% Similarity=0.005 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
.+.++-.++...|+.+....+.++...++
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~ 32 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGID 32 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCC
Confidence 44455555556666666666666655544
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=64.97 E-value=1e+02 Score=27.33 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=37.5
Q ss_pred cHHHHHHHcCCchHHHHHHHHHHHhCCC-----CHHHHHHH--HHHHHhcCChHHHHHHHHH
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLILKRDAT-----CMEAIACI--GVNHFYNDQPEVALLFYRR 178 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l--a~~~~~~~~~~~A~~~~~~ 178 (341)
..+..++..++|..|...|.+++...+. ....+..+ |..++..-++++|.+++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3456778889999999999988877542 12233333 4444567788888888875
No 482
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.21 E-value=16 Score=23.66 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=8.7
Q ss_pred cCChHHHHHHHHHHHH
Q psy16611 166 NDQPEVALLFYRRLLQ 181 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~ 181 (341)
.|++++|+.+|..+++
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3555555555555543
No 483
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=64.15 E-value=23 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 327 (341)
.+|..+...|++++|..+|-+|+...|+-.+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 45666666666666666666666666654443
No 484
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.70 E-value=45 Score=22.92 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
-.+..||.+|...|+.+.|...|+.--.+.|.+..
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 35666777777777777777777776667776644
No 485
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=63.57 E-value=45 Score=31.21 Aligned_cols=79 Identities=13% Similarity=-0.005 Sum_probs=45.8
Q ss_pred HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q psy16611 131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 210 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 210 (341)
+....+.+....+.-+.............+..+-..++.+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3344444444444443333334444555556666666677777777777776666 45556666666666666666666
Q ss_pred H
Q psy16611 211 E 211 (341)
Q Consensus 211 ~ 211 (341)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 486
>KOG1497|consensus
Probab=63.28 E-value=97 Score=26.58 Aligned_cols=99 Identities=10% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----- 256 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 256 (341)
......||.+|...++|..|-..+.-.-.-.... .....+..+|.+|...++..+|..+..++--.-.+.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 257 -GLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 257 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
.......+.++-..++|-+|...|-+...
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.73 E-value=36 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
...|.-+-..|++++|+.+|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 488
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.50 E-value=26 Score=22.02 Aligned_cols=20 Identities=10% Similarity=-0.104 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy16611 229 ISHVAIGISDTRLAIQCLHL 248 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~ 248 (341)
.|.-+-..|++++|+.+|.+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33333444444444444443
No 489
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=61.72 E-value=1e+02 Score=26.33 Aligned_cols=148 Identities=13% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHcCCh---
Q psy16611 131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL----QMGLYNAELFNNLALCCFYSQQY--- 203 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~--- 203 (341)
..+++.+.++.+++.+..+|--.+.++..+.+..++| ++.+.......+ ..-|.-... .+..|-.
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L-------~F~DGtPFad 182 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL-------KFSDGTPFAD 182 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc-------ccCCCCCCCC
Confidence 6677889999999999999988899999999999999 455555444433 333321111 1111110
Q ss_pred hHHHHHHHHHHh-----------hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH
Q psy16611 204 DMVVTCFERALS-----------LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAR 269 (341)
Q Consensus 204 ~~A~~~~~~al~-----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 269 (341)
++....+..... ..+..........-+..+...+..++|+..++..+...... ......++.++..
T Consensus 183 ~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~ 262 (301)
T TIGR03362 183 DETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQ 262 (301)
T ss_pred HHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHH
Confidence 111111111000 00100002223344677788899999999999876543322 3345667888999
Q ss_pred hCCHHHHHHHHHHHHHh
Q psy16611 270 EGHIERASTYLQAAAAS 286 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~ 286 (341)
.|.++-|...|+...+.
T Consensus 263 ~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 263 AGKAELAQQLYAALDQQ 279 (301)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 490
>KOG2561|consensus
Probab=61.71 E-value=60 Score=29.06 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
++..|...+....|.+|+.++-.+-+.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~ 192 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADES 192 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445566666667777777776666443
No 491
>KOG4521|consensus
Probab=60.92 E-value=99 Score=31.55 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---------------------------chHHHHHHHHHHHHhcCCH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE---------------------------NAADVWYNISHVAIGISDT 239 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------~~~~~~~~la~~~~~~g~~ 239 (341)
+...+.+|.+|...|+..+|+.+|.++..-..+. .....|....+++...+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 4456788999999999999999999986642111 0012233344555666777
Q ss_pred HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHH
Q psy16611 240 RLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQ 308 (341)
Q Consensus 240 ~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~ 308 (341)
+.+.....+|++.-|++ +..+..+=.-+..+|.+-+|...+- .+|+.. ..+..+..++++.|+.+
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccchH
Confidence 77777777777765443 2333444444566677777655442 345432 26667788888887764
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.40 E-value=62 Score=23.42 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQ 281 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (341)
..+|..++... ++..+.|..+... ....+..|...|..+...|++.+|.+.|+
T Consensus 69 LkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 69 LKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555432 2234445544433 23445556666677777777777777665
No 493
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=59.85 E-value=23 Score=18.29 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=6.3
Q ss_pred ChHHHHHHHHHHH
Q psy16611 168 QPEVALLFYRRLL 180 (341)
Q Consensus 168 ~~~~A~~~~~~al 180 (341)
+..+|+.+|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555555443
No 494
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=59.54 E-value=1.2e+02 Score=26.26 Aligned_cols=121 Identities=9% Similarity=-0.040 Sum_probs=0.0
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+....+..|...+...--..+...|+...|..+-.+- .-.+...|+....++...++|++-..+... ...|.
T Consensus 167 Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPI 238 (319)
T PF04840_consen 167 LEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPI 238 (319)
T ss_pred HHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCC
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHL 248 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (341)
.|.-...++...|+..+|..+..++ .. ......|...|++.+|.+..-+
T Consensus 239 GyepFv~~~~~~~~~~eA~~yI~k~---------~~--~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 239 GYEPFVEACLKYGNKKEASKYIPKI---------PD--EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHHHHhC---------Ch--HHHHHHHHHCCCHHHHHHHHHH
No 495
>PF15469 Sec5: Exocyst complex component Sec5
Probab=59.16 E-value=82 Score=24.41 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 305 GDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 305 g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
...++...+....++++++...+|..+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4566677777777788877767776653
No 496
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=58.70 E-value=2.4e+02 Score=29.62 Aligned_cols=83 Identities=7% Similarity=-0.113 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcC----CCC--HHHHHHHHHHHHHhC--------------------CHHHHHHHHHHHHHhCCCc-
Q psy16611 238 DTRLAIQCLHLALSID----SSH--GLSQNNLAVLEAREG--------------------HIERASTYLQAAAASSPYL- 290 (341)
Q Consensus 238 ~~~~A~~~~~~al~~~----p~~--~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~p~~- 290 (341)
.+++++.+|.++.... |.. .++...++.++.... .-.++...+.+++.....+
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 4688999999987432 222 345666677776666 6778888888888765421
Q ss_pred -----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 291 -----YETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 291 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
...+..++.+|...|-..+..-+++.++..
T Consensus 440 ~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 440 SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 347888999999999998888888887744
No 497
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.68 E-value=1.3e+02 Score=28.07 Aligned_cols=29 Identities=17% Similarity=-0.028 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..-|..+|..+++.++|.+|+..+-.+-.
T Consensus 318 vYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 318 VYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777766666543
No 498
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=58.29 E-value=92 Score=24.69 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+..+-......|+++.|-++|--.+...+-+..
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR 76 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR 76 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH
Confidence 333444444445555555555555554444433
No 499
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.88 E-value=32 Score=22.36 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=12.1
Q ss_pred HHHhCCHHHHHHHHHHHHH
Q psy16611 267 EAREGHIERASTYLQAAAA 285 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~ 285 (341)
+-..|+|++|+.+|..+++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3455677777777766654
No 500
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.65 E-value=28 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=12.8
Q ss_pred HHHHhCCHHHHHHHHHHHHH
Q psy16611 266 LEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al~ 285 (341)
-+-..|++++|+.+|..+++
T Consensus 17 ~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 17 KADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34446777777777776654
Done!