Query psy16611
Match_columns 341
No_of_seqs 700 out of 2994
Neff 11.1
Searched_HMMs 29240
Date Fri Aug 16 17:22:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 100.0 1.6E-31 5.5E-36 215.5 23.5 201 113-319 2-213 (217)
2 2h6f_A Protein farnesyltransfe 100.0 2.1E-30 7.3E-35 225.2 23.1 217 119-338 97-322 (382)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.5E-30 3.2E-34 223.3 27.3 226 109-339 162-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6E-29 2E-33 218.2 30.0 258 74-338 79-352 (388)
5 4eqf_A PEX5-related protein; a 100.0 3.6E-29 1.2E-33 217.7 26.2 219 120-340 66-296 (365)
6 2q7f_A YRRB protein; TPR, prot 100.0 4E-29 1.4E-33 204.6 22.8 216 120-337 24-239 (243)
7 2pl2_A Hypothetical conserved 100.0 7.4E-29 2.5E-33 199.9 23.6 186 150-338 2-198 (217)
8 3hym_B Cell division cycle pro 100.0 2.3E-28 7.9E-33 209.1 27.7 257 74-335 34-314 (330)
9 4eqf_A PEX5-related protein; a 100.0 3.3E-29 1.1E-33 218.0 22.8 226 109-339 92-341 (365)
10 3uq3_A Heat shock protein STI1 100.0 2.3E-28 7.8E-33 201.8 25.6 212 120-334 6-256 (258)
11 1fch_A Peroxisomal targeting s 100.0 7.5E-28 2.6E-32 209.4 30.0 220 120-339 65-344 (368)
12 2h6f_A Protein farnesyltransfe 100.0 8.2E-29 2.8E-33 215.3 22.7 225 106-336 121-364 (382)
13 3hym_B Cell division cycle pro 100.0 1.1E-27 3.7E-32 204.9 28.8 229 106-339 46-284 (330)
14 2ho1_A Type 4 fimbrial biogene 100.0 2.4E-27 8.2E-32 195.3 29.2 211 119-331 37-249 (252)
15 3vtx_A MAMA; tetratricopeptide 100.0 7.1E-28 2.4E-32 189.0 23.2 173 151-325 3-175 (184)
16 2vq2_A PILW, putative fimbrial 100.0 4.2E-27 1.4E-31 190.1 28.2 210 120-331 9-222 (225)
17 3ieg_A DNAJ homolog subfamily 100.0 1.1E-26 3.8E-31 200.8 31.0 214 124-339 125-354 (359)
18 3ieg_A DNAJ homolog subfamily 100.0 1.1E-26 3.7E-31 200.8 30.0 213 120-334 4-231 (359)
19 2y4t_A DNAJ homolog subfamily 100.0 9.3E-27 3.2E-31 208.0 27.4 212 119-332 26-252 (450)
20 3u4t_A TPR repeat-containing p 100.0 2.3E-27 7.9E-32 197.6 21.6 222 109-336 30-266 (272)
21 3cv0_A Peroxisome targeting si 100.0 5.6E-27 1.9E-31 200.3 24.4 224 111-339 50-300 (327)
22 3vtx_A MAMA; tetratricopeptide 100.0 6E-27 2E-31 183.7 22.4 170 120-291 6-175 (184)
23 2xpi_A Anaphase-promoting comp 100.0 1.8E-26 6.1E-31 213.5 29.4 220 111-335 368-594 (597)
24 2y4t_A DNAJ homolog subfamily 100.0 1.3E-26 4.4E-31 207.1 27.5 215 122-338 146-376 (450)
25 3cv0_A Peroxisome targeting si 100.0 1.4E-26 4.8E-31 197.8 25.0 218 120-339 22-254 (327)
26 4i17_A Hypothetical protein; T 100.0 1E-26 3.5E-31 188.8 22.8 210 120-338 8-227 (228)
27 4abn_A Tetratricopeptide repea 100.0 2.8E-26 9.6E-31 206.1 24.5 202 134-338 83-305 (474)
28 4gyw_A UDP-N-acetylglucosamine 100.0 4.4E-27 1.5E-31 219.4 19.6 172 149-322 5-176 (723)
29 2xpi_A Anaphase-promoting comp 99.9 2.9E-25 9.8E-30 205.4 30.1 224 111-339 334-564 (597)
30 4abn_A Tetratricopeptide repea 99.9 1.5E-26 5E-31 208.0 20.5 194 120-316 103-317 (474)
31 3u4t_A TPR repeat-containing p 99.9 3.6E-26 1.2E-30 190.4 20.6 215 120-337 4-233 (272)
32 3mkr_A Coatomer subunit epsilo 99.9 8.2E-25 2.8E-29 184.0 28.3 209 118-333 64-277 (291)
33 4i17_A Hypothetical protein; T 99.9 1.7E-25 5.7E-30 181.7 22.4 154 152-307 6-169 (228)
34 1fch_A Peroxisomal targeting s 99.9 2.2E-25 7.5E-30 193.8 24.3 207 109-320 91-359 (368)
35 4gyw_A UDP-N-acetylglucosamine 99.9 4.4E-26 1.5E-30 212.7 19.0 168 120-289 10-177 (723)
36 2gw1_A Mitochondrial precursor 99.9 1.1E-25 3.6E-30 204.3 21.1 216 119-336 270-494 (514)
37 2gw1_A Mitochondrial precursor 99.9 2.3E-25 7.9E-30 202.1 23.0 221 116-339 234-463 (514)
38 3fp2_A TPR repeat-containing p 99.9 5.3E-25 1.8E-29 200.9 25.4 207 120-328 277-499 (537)
39 3qky_A Outer membrane assembly 99.9 1.2E-24 4E-29 180.4 22.8 186 149-334 11-238 (261)
40 3fp2_A TPR repeat-containing p 99.9 6.6E-25 2.2E-29 200.3 22.8 217 120-339 244-476 (537)
41 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-24 6.3E-29 176.8 22.0 184 120-305 58-241 (243)
42 2vq2_A PILW, putative fimbrial 99.9 8.9E-24 3E-28 170.5 25.1 188 148-337 3-194 (225)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 3E-24 1E-28 178.8 22.1 204 119-326 43-250 (275)
44 2ond_A Cleavage stimulation fa 99.9 7.1E-24 2.4E-28 180.1 24.7 217 105-326 39-276 (308)
45 1ouv_A Conserved hypothetical 99.9 7.7E-23 2.6E-27 170.5 29.9 203 120-336 7-229 (273)
46 3nf1_A KLC 1, kinesin light ch 99.9 1.9E-24 6.3E-29 183.2 20.1 209 113-323 21-310 (311)
47 3mkr_A Coatomer subunit epsilo 99.9 1.6E-23 5.4E-28 176.2 24.6 210 120-339 35-248 (291)
48 2ho1_A Type 4 fimbrial biogene 99.9 1.4E-23 4.9E-28 172.6 23.6 188 149-338 32-222 (252)
49 4g1t_A Interferon-induced prot 99.9 2.7E-23 9.4E-28 186.7 26.0 215 120-336 52-292 (472)
50 2pzi_A Probable serine/threoni 99.9 2.1E-24 7.2E-29 202.1 18.6 187 111-306 389-583 (681)
51 3qky_A Outer membrane assembly 99.9 7.2E-24 2.5E-28 175.6 19.7 191 120-310 16-251 (261)
52 3urz_A Uncharacterized protein 99.9 1.1E-23 3.7E-28 168.5 19.1 180 153-336 4-201 (208)
53 3uq3_A Heat shock protein STI1 99.9 5.5E-23 1.9E-27 169.4 23.6 187 152-339 4-221 (258)
54 2ond_A Cleavage stimulation fa 99.9 7.4E-23 2.5E-27 173.8 24.9 201 136-338 33-254 (308)
55 3as5_A MAMA; tetratricopeptide 99.9 4.9E-23 1.7E-27 160.8 19.6 172 153-326 8-179 (186)
56 1ouv_A Conserved hypothetical 99.9 4.1E-22 1.4E-26 166.1 25.8 196 120-327 39-258 (273)
57 2pzi_A Probable serine/threoni 99.9 2.3E-23 7.8E-28 195.1 17.7 183 147-335 388-578 (681)
58 4ga2_A E3 SUMO-protein ligase 99.9 5.1E-24 1.7E-28 161.1 10.8 141 193-335 3-144 (150)
59 1qqe_A Vesicular transport pro 99.9 4.9E-23 1.7E-27 173.5 17.7 213 120-332 38-281 (292)
60 3as5_A MAMA; tetratricopeptide 99.9 1.8E-22 6E-27 157.6 19.7 172 119-292 8-179 (186)
61 4ga2_A E3 SUMO-protein ligase 99.9 9.5E-24 3.2E-28 159.6 11.9 147 158-306 2-149 (150)
62 4a1s_A PINS, partner of inscut 99.9 4.3E-23 1.5E-27 182.1 17.8 201 120-322 49-294 (411)
63 4g1t_A Interferon-induced prot 99.9 8.4E-22 2.9E-26 177.0 25.0 210 115-326 132-369 (472)
64 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.9E-22 6.4E-27 168.0 18.9 205 130-338 16-228 (275)
65 3urz_A Uncharacterized protein 99.9 1E-22 3.5E-27 162.7 15.9 177 120-300 5-199 (208)
66 3sf4_A G-protein-signaling mod 99.9 1.8E-22 6.3E-27 177.4 19.0 204 121-324 49-300 (406)
67 3edt_B KLC 2, kinesin light ch 99.9 2.7E-22 9.2E-27 167.4 18.5 190 130-321 12-282 (283)
68 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.8E-21 6.2E-26 157.5 21.7 189 120-326 5-219 (225)
69 4a1s_A PINS, partner of inscut 99.9 9.6E-23 3.3E-27 179.8 14.3 227 111-337 77-355 (411)
70 3ro2_A PINS homolog, G-protein 99.9 4.5E-22 1.5E-26 170.0 17.8 216 109-324 32-296 (338)
71 3sf4_A G-protein-signaling mod 99.9 2.9E-22 9.9E-27 176.1 16.7 265 74-338 21-360 (406)
72 3dra_A Protein farnesyltransfe 99.9 4.3E-21 1.5E-25 160.6 22.6 229 100-333 51-301 (306)
73 1qqe_A Vesicular transport pro 99.9 2.2E-21 7.4E-26 163.4 18.9 181 134-328 32-236 (292)
74 3ro2_A PINS homolog, G-protein 99.9 3.9E-22 1.3E-26 170.4 14.3 207 118-324 82-336 (338)
75 3ulq_A Response regulator aspa 99.9 1.3E-21 4.6E-26 171.2 17.7 166 122-287 106-294 (383)
76 4gco_A Protein STI-1; structur 99.9 3.2E-21 1.1E-25 141.0 16.4 120 213-334 5-124 (126)
77 2yhc_A BAMD, UPF0169 lipoprote 99.9 7E-21 2.4E-25 154.0 19.4 167 107-292 29-219 (225)
78 3qou_A Protein YBBN; thioredox 99.9 9.2E-21 3.1E-25 159.1 19.8 170 148-319 112-283 (287)
79 2r5s_A Uncharacterized protein 99.9 9E-22 3.1E-26 153.0 12.6 161 155-318 8-171 (176)
80 4gco_A Protein STI-1; structur 99.9 3.7E-21 1.3E-25 140.7 14.9 121 179-301 5-125 (126)
81 3ulq_A Response regulator aspa 99.9 2.4E-21 8.3E-26 169.5 16.0 206 114-322 138-370 (383)
82 2vsy_A XCC0866; transferase, g 99.9 9.8E-21 3.4E-25 174.2 19.6 165 132-298 2-169 (568)
83 3q15_A PSP28, response regulat 99.9 1.9E-20 6.5E-25 163.6 20.4 200 121-320 103-365 (378)
84 2r5s_A Uncharacterized protein 99.9 4.6E-21 1.6E-25 149.0 14.5 163 120-285 7-172 (176)
85 2vsy_A XCC0866; transferase, g 99.9 1.3E-20 4.4E-25 173.4 19.6 163 166-330 2-167 (568)
86 2ooe_A Cleavage stimulation fa 99.9 5E-20 1.7E-24 168.1 22.9 214 106-324 262-496 (530)
87 3gyz_A Chaperone protein IPGC; 99.9 4.6E-21 1.6E-25 144.2 12.6 118 206-325 21-138 (151)
88 3dra_A Protein farnesyltransfe 99.9 2E-19 6.7E-24 150.6 23.6 208 127-336 40-269 (306)
89 2ooe_A Cleavage stimulation fa 99.9 1.2E-19 4.2E-24 165.5 24.3 200 136-337 255-475 (530)
90 4f3v_A ESX-1 secretion system 99.9 5E-21 1.7E-25 156.6 13.2 208 120-332 8-248 (282)
91 3rjv_A Putative SEL1 repeat pr 99.9 1.7E-19 5.9E-24 144.4 21.9 188 136-335 3-210 (212)
92 2vgx_A Chaperone SYCD; alterna 99.8 1.6E-20 5.4E-25 141.4 13.9 131 207-339 7-137 (148)
93 3nf1_A KLC 1, kinesin light ch 99.8 3.6E-20 1.2E-24 156.7 17.4 170 149-320 23-224 (311)
94 3qou_A Protein YBBN; thioredox 99.8 4E-20 1.4E-24 155.2 17.4 164 120-285 118-283 (287)
95 3dss_A Geranylgeranyl transfer 99.8 8.5E-19 2.9E-23 147.5 25.2 203 128-332 38-279 (331)
96 2ifu_A Gamma-SNAP; membrane fu 99.8 3.9E-20 1.3E-24 156.9 15.5 193 132-326 4-229 (307)
97 3gyz_A Chaperone protein IPGC; 99.8 1.7E-20 5.9E-25 141.1 10.9 116 174-291 23-138 (151)
98 1p5q_A FKBP52, FK506-binding p 99.8 8E-22 2.7E-26 169.2 2.7 154 166-319 126-293 (336)
99 3edt_B KLC 2, kinesin light ch 99.8 1.9E-19 6.4E-24 150.0 17.0 171 114-286 38-281 (283)
100 2xcb_A PCRH, regulatory protei 99.8 1.3E-19 4.4E-24 135.5 12.9 130 208-339 5-134 (142)
101 3dss_A Geranylgeranyl transfer 99.8 8E-18 2.8E-22 141.6 24.6 227 100-331 48-315 (331)
102 2xm6_A Protein corresponding t 99.8 8.5E-18 2.9E-22 151.8 26.0 202 120-333 220-448 (490)
103 2xm6_A Protein corresponding t 99.8 5.5E-17 1.9E-21 146.5 30.5 203 120-336 76-302 (490)
104 2c2l_A CHIP, carboxy terminus 99.8 2.1E-19 7.3E-24 150.2 13.0 194 120-320 5-199 (281)
105 2vgx_A Chaperone SYCD; alterna 99.8 5.2E-19 1.8E-23 133.1 13.0 120 173-294 7-126 (148)
106 2fo7_A Synthetic consensus TPR 99.8 6.9E-18 2.3E-22 124.1 18.4 133 189-323 3-135 (136)
107 1p5q_A FKBP52, FK506-binding p 99.8 1.8E-19 6E-24 154.6 10.7 154 131-286 125-294 (336)
108 2fo7_A Synthetic consensus TPR 99.8 1.2E-17 3.9E-22 122.9 18.6 134 154-289 2-135 (136)
109 3q15_A PSP28, response regulat 99.8 7.4E-18 2.5E-22 147.1 19.6 169 155-323 103-293 (378)
110 2xcb_A PCRH, regulatory protei 99.8 1.3E-18 4.4E-23 130.1 12.1 125 174-300 5-129 (142)
111 1dce_A Protein (RAB geranylger 99.8 7.4E-19 2.5E-23 160.3 12.9 194 128-323 37-270 (567)
112 3e4b_A ALGK; tetratricopeptide 99.8 3.5E-17 1.2E-21 146.1 23.4 187 121-320 178-387 (452)
113 1hz4_A MALT regulatory protein 99.8 4.8E-17 1.6E-21 141.6 23.8 200 122-321 56-283 (373)
114 3e4b_A ALGK; tetratricopeptide 99.8 3.4E-17 1.2E-21 146.1 23.3 201 120-336 142-365 (452)
115 3upv_A Heat shock protein STI1 99.8 6.9E-18 2.4E-22 123.3 15.5 116 223-338 4-125 (126)
116 3q7a_A Farnesyltransferase alp 99.8 4E-17 1.4E-21 137.9 21.9 229 100-333 72-345 (349)
117 2e2e_A Formate-dependent nitri 99.8 2.9E-18 9.9E-23 133.1 13.9 129 200-330 23-154 (177)
118 2ifu_A Gamma-SNAP; membrane fu 99.8 1.2E-17 4E-22 141.6 18.4 190 120-312 37-253 (307)
119 2c2l_A CHIP, carboxy terminus 99.8 2E-18 6.7E-23 144.4 13.2 179 150-335 1-179 (281)
120 3q7a_A Farnesyltransferase alp 99.8 9.1E-17 3.1E-21 135.7 22.5 184 122-307 57-258 (349)
121 3rjv_A Putative SEL1 repeat pr 99.8 5.9E-17 2E-21 129.6 20.4 170 120-299 19-208 (212)
122 2fbn_A 70 kDa peptidylprolyl i 99.8 8.7E-19 3E-23 138.8 9.2 160 160-319 11-185 (198)
123 2qfc_A PLCR protein; TPR, HTH, 99.8 5.4E-17 1.8E-21 136.6 20.4 172 150-321 72-267 (293)
124 1hh8_A P67PHOX, NCF-2, neutrop 99.8 5.6E-17 1.9E-21 129.6 19.6 95 122-219 9-103 (213)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.8 3.8E-17 1.3E-21 130.6 18.5 133 154-291 7-155 (213)
126 3upv_A Heat shock protein STI1 99.8 2.7E-17 9.2E-22 120.1 15.5 116 186-303 3-124 (126)
127 1hz4_A MALT regulatory protein 99.8 7.5E-17 2.6E-21 140.4 20.6 202 122-323 96-325 (373)
128 2e2e_A Formate-dependent nitri 99.8 1.4E-17 4.7E-22 129.3 13.7 128 129-258 20-150 (177)
129 1a17_A Serine/threonine protei 99.8 9E-17 3.1E-21 122.9 18.0 130 188-319 14-145 (166)
130 1dce_A Protein (RAB geranylger 99.7 1.5E-16 5.1E-21 145.1 21.7 168 167-336 43-237 (567)
131 3sz7_A HSC70 cochaperone (SGT) 99.7 4.9E-17 1.7E-21 124.6 15.5 115 184-300 8-122 (164)
132 1a17_A Serine/threonine protei 99.7 1.4E-16 4.9E-21 121.7 18.0 132 153-286 13-146 (166)
133 2qfc_A PLCR protein; TPR, HTH, 99.7 2.1E-16 7.2E-21 132.9 20.5 168 120-287 76-267 (293)
134 3u3w_A Transcriptional activat 99.7 1.3E-16 4.4E-21 134.3 19.1 165 157-321 79-267 (293)
135 2fbn_A 70 kDa peptidylprolyl i 99.7 1.6E-17 5.4E-22 131.5 12.6 149 189-339 6-170 (198)
136 2lni_A Stress-induced-phosphop 99.7 1E-16 3.4E-21 117.8 16.0 120 184-305 13-132 (133)
137 4gcn_A Protein STI-1; structur 99.7 3.4E-17 1.2E-21 119.7 13.3 111 223-334 8-125 (127)
138 3u3w_A Transcriptional activat 99.7 1.4E-16 4.7E-21 134.0 18.8 166 122-287 78-267 (293)
139 2hr2_A Hypothetical protein; a 99.7 1.3E-17 4.5E-22 123.9 10.7 114 223-336 11-147 (159)
140 3sz7_A HSC70 cochaperone (SGT) 99.7 7.8E-17 2.7E-21 123.4 15.3 112 152-265 10-121 (164)
141 2vyi_A SGTA protein; chaperone 99.7 1.2E-16 4.2E-21 116.8 14.4 119 186-306 11-129 (131)
142 2lni_A Stress-induced-phosphop 99.7 1.6E-16 5.6E-21 116.6 15.0 122 114-237 11-132 (133)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 6.2E-18 2.1E-22 151.0 7.9 144 169-312 250-406 (457)
144 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 8.7E-18 3E-22 150.1 8.8 152 131-284 246-413 (457)
145 2vyi_A SGTA protein; chaperone 99.7 1.5E-16 5.1E-21 116.3 13.7 122 150-273 9-130 (131)
146 3mv2_B Coatomer subunit epsilo 99.7 8.8E-16 3E-20 127.3 19.5 188 138-332 85-294 (310)
147 3rkv_A Putative peptidylprolyl 99.7 2.1E-16 7.2E-21 120.7 14.8 114 224-337 12-144 (162)
148 1hxi_A PEX5, peroxisome target 99.7 1.7E-16 5.9E-21 114.9 12.6 103 224-326 18-120 (121)
149 3gw4_A Uncharacterized protein 99.7 4.7E-16 1.6E-20 123.1 16.3 155 165-321 4-177 (203)
150 3q49_B STIP1 homology and U bo 99.7 5.5E-16 1.9E-20 114.7 15.5 113 223-335 9-126 (137)
151 1elw_A TPR1-domain of HOP; HOP 99.7 1.7E-15 5.7E-20 108.5 17.5 114 223-336 4-117 (118)
152 1na0_A Designed protein CTPR3; 99.7 1.6E-15 5.5E-20 109.8 17.3 113 188-302 10-122 (125)
153 4gcn_A Protein STI-1; structur 99.7 8.3E-16 2.8E-20 112.3 15.5 101 154-254 9-114 (127)
154 4f3v_A ESX-1 secretion system 99.7 2.5E-17 8.7E-22 134.7 8.1 186 108-298 32-248 (282)
155 3q49_B STIP1 homology and U bo 99.7 5.4E-16 1.8E-20 114.7 14.5 118 183-302 5-127 (137)
156 3gw4_A Uncharacterized protein 99.7 6.8E-16 2.3E-20 122.1 15.9 159 130-288 3-178 (203)
157 2hr2_A Hypothetical protein; a 99.7 1.8E-16 6.2E-21 117.8 11.4 113 188-300 12-145 (159)
158 1na0_A Designed protein CTPR3; 99.7 2.5E-15 8.7E-20 108.7 17.2 121 149-271 4-125 (125)
159 3rkv_A Putative peptidylprolyl 99.7 5.3E-16 1.8E-20 118.5 13.8 117 188-306 12-147 (162)
160 2xev_A YBGF; tetratricopeptide 99.7 2.9E-15 9.8E-20 109.5 16.5 115 224-338 3-123 (129)
161 2dba_A Smooth muscle cell asso 99.7 3.4E-15 1.2E-19 111.7 16.9 118 217-336 24-144 (148)
162 1xi4_A Clathrin heavy chain; a 99.7 7.4E-15 2.5E-19 141.2 22.7 196 120-337 1106-1326(1630)
163 1elw_A TPR1-domain of HOP; HOP 99.7 3.5E-15 1.2E-19 106.8 15.7 111 188-300 5-115 (118)
164 1hxi_A PEX5, peroxisome target 99.7 7.7E-16 2.6E-20 111.4 12.0 99 190-290 20-118 (121)
165 1wao_1 Serine/threonine protei 99.7 3.6E-17 1.2E-21 146.7 5.3 136 187-324 6-154 (477)
166 2if4_A ATFKBP42; FKBP-like, al 99.7 1E-16 3.5E-21 137.5 7.4 167 141-326 167-334 (338)
167 1elr_A TPR2A-domain of HOP; HO 99.6 6.6E-15 2.3E-19 107.5 15.1 116 223-339 4-126 (131)
168 2if4_A ATFKBP42; FKBP-like, al 99.6 2.6E-16 9E-21 134.9 8.6 154 119-291 179-333 (338)
169 1wao_1 Serine/threonine protei 99.6 7E-17 2.4E-21 144.8 5.2 126 120-247 7-134 (477)
170 2dba_A Smooth muscle cell asso 99.6 7.4E-15 2.5E-19 109.8 15.4 111 120-232 29-142 (148)
171 4b4t_Q 26S proteasome regulato 99.6 3E-15 1E-19 132.8 15.3 201 120-320 5-245 (434)
172 1zu2_A Mitochondrial import re 99.6 1.4E-15 4.8E-20 112.8 9.7 98 238-335 17-135 (158)
173 2kck_A TPR repeat; tetratricop 99.6 2.5E-15 8.7E-20 106.6 10.9 105 218-324 3-110 (112)
174 1ihg_A Cyclophilin 40; ppiase 99.6 8.9E-15 3.1E-19 126.7 16.2 141 153-313 223-363 (370)
175 2xev_A YBGF; tetratricopeptide 99.6 2.6E-14 8.7E-19 104.4 16.2 116 189-304 4-123 (129)
176 4e6h_A MRNA 3'-END-processing 99.6 8.3E-14 2.8E-18 128.9 23.1 222 105-331 332-581 (679)
177 1b89_A Protein (clathrin heavy 99.6 2.9E-15 1E-19 129.5 12.1 193 120-338 62-254 (449)
178 3mv2_B Coatomer subunit epsilo 99.6 4.7E-14 1.6E-18 116.9 18.6 170 120-294 101-290 (310)
179 1elr_A TPR2A-domain of HOP; HO 99.6 7.2E-15 2.5E-19 107.3 12.4 114 187-303 4-124 (131)
180 2kck_A TPR repeat; tetratricop 99.6 4.1E-15 1.4E-19 105.5 10.6 104 150-255 3-109 (112)
181 3k9i_A BH0479 protein; putativ 99.6 2.6E-15 8.8E-20 108.0 9.0 93 200-294 3-98 (117)
182 3ro3_A PINS homolog, G-protein 99.6 2.1E-14 7.2E-19 108.8 14.1 134 189-322 11-160 (164)
183 1ihg_A Cyclophilin 40; ppiase 99.6 1.6E-14 5.6E-19 125.1 14.8 140 120-279 224-363 (370)
184 4e6h_A MRNA 3'-END-processing 99.6 1.6E-13 5.5E-18 126.9 21.5 204 136-339 326-555 (679)
185 3k9i_A BH0479 protein; putativ 99.6 6.2E-15 2.1E-19 105.9 9.4 99 236-334 3-104 (117)
186 3ro3_A PINS homolog, G-protein 99.6 3.8E-14 1.3E-18 107.4 13.7 135 154-288 10-160 (164)
187 1zu2_A Mitochondrial import re 99.6 9.3E-15 3.2E-19 108.4 9.4 100 166-291 15-125 (158)
188 1xi4_A Clathrin heavy chain; a 99.6 8.9E-13 3.1E-17 127.0 23.3 172 125-318 1055-1248(1630)
189 1b89_A Protein (clathrin heavy 99.5 3.1E-14 1.1E-18 123.1 10.8 180 120-318 123-309 (449)
190 4b4t_Q 26S proteasome regulato 99.5 7.7E-13 2.6E-17 117.2 16.2 169 154-322 5-206 (434)
191 2kat_A Uncharacterized protein 99.4 1.2E-12 4E-17 93.5 11.5 85 136-220 2-86 (115)
192 2kat_A Uncharacterized protein 99.4 4.3E-12 1.5E-16 90.6 13.2 82 205-288 3-84 (115)
193 2l6j_A TPR repeat-containing p 99.4 1.5E-13 5.2E-18 97.3 5.4 94 223-316 4-103 (111)
194 1na3_A Designed protein CTPR2; 99.4 7.4E-12 2.5E-16 85.0 12.1 82 223-304 9-90 (91)
195 2l6j_A TPR repeat-containing p 99.4 4.9E-13 1.7E-17 94.6 5.7 94 186-281 3-102 (111)
196 1na3_A Designed protein CTPR2; 99.4 1.2E-11 4.2E-16 83.9 11.5 83 186-270 8-90 (91)
197 1klx_A Cysteine rich protein B 99.3 6.9E-11 2.4E-15 87.2 14.6 109 202-320 10-126 (138)
198 2kc7_A BFR218_protein; tetratr 99.3 5.3E-12 1.8E-16 87.4 7.4 90 227-324 4-94 (99)
199 3ma5_A Tetratricopeptide repea 99.3 1.6E-11 5.5E-16 85.2 9.5 72 149-220 3-74 (100)
200 3n71_A Histone lysine methyltr 99.3 2.3E-11 7.7E-16 108.6 12.8 122 163-284 319-462 (490)
201 1klx_A Cysteine rich protein B 99.3 9.7E-11 3.3E-15 86.4 14.2 109 168-286 10-126 (138)
202 3n71_A Histone lysine methyltr 99.3 2.2E-11 7.4E-16 108.7 12.4 133 192-324 314-468 (490)
203 3u64_A Protein TP_0956; tetrat 99.3 2.8E-10 9.5E-15 92.2 17.1 177 136-323 49-272 (301)
204 3ma5_A Tetratricopeptide repea 99.3 1.8E-11 6.1E-16 85.0 8.9 65 223-287 7-71 (100)
205 2kc7_A BFR218_protein; tetratr 99.2 1.7E-11 5.8E-16 84.8 6.9 90 191-290 4-94 (99)
206 3ly7_A Transcriptional activat 99.2 1.3E-09 4.4E-14 92.0 16.2 155 144-325 185-344 (372)
207 3ly7_A Transcriptional activat 99.2 2.4E-09 8.3E-14 90.4 17.8 153 111-291 189-344 (372)
208 1pc2_A Mitochondria fission pr 99.1 8.1E-10 2.8E-14 80.9 12.0 100 239-338 14-118 (152)
209 3bee_A Putative YFRE protein; 99.1 2E-09 6.7E-14 73.1 11.6 75 253-327 2-79 (93)
210 2uy1_A Cleavage stimulation fa 99.1 3.7E-08 1.3E-12 88.4 22.1 190 136-337 196-396 (493)
211 2v5f_A Prolyl 4-hydroxylase su 99.0 1.1E-08 3.7E-13 71.2 12.2 76 223-298 5-87 (104)
212 3u64_A Protein TP_0956; tetrat 99.0 1E-08 3.5E-13 83.1 13.1 111 180-290 145-273 (301)
213 3qww_A SET and MYND domain-con 99.0 6.8E-09 2.3E-13 91.1 13.2 103 233-335 308-431 (433)
214 1pc2_A Mitochondria fission pr 99.0 2E-08 6.8E-13 73.6 12.9 90 170-261 15-109 (152)
215 3qwp_A SET and MYND domain-con 98.9 1.2E-08 4E-13 89.8 13.4 109 229-337 293-422 (429)
216 3bee_A Putative YFRE protein; 98.9 3.1E-08 1.1E-12 67.1 12.2 70 150-219 3-75 (93)
217 2uy1_A Cleavage stimulation fa 98.9 9.3E-08 3.2E-12 85.9 18.5 199 106-319 203-412 (493)
218 4g26_A Pentatricopeptide repea 98.9 8.1E-07 2.8E-11 79.8 22.7 157 127-285 34-203 (501)
219 2v5f_A Prolyl 4-hydroxylase su 98.8 5.3E-08 1.8E-12 67.7 11.6 77 188-264 6-87 (104)
220 3qww_A SET and MYND domain-con 98.8 4.4E-08 1.5E-12 86.0 13.6 87 200-286 311-411 (433)
221 3qwp_A SET and MYND domain-con 98.8 2.6E-08 8.8E-13 87.6 12.1 87 199-285 299-399 (429)
222 4g26_A Pentatricopeptide repea 98.8 2.4E-06 8.2E-11 76.8 24.1 169 155-325 28-211 (501)
223 1nzn_A CGI-135 protein, fissio 98.7 4.3E-07 1.5E-11 64.0 11.3 100 239-338 17-121 (126)
224 1nzn_A CGI-135 protein, fissio 98.5 4.9E-06 1.7E-10 58.6 12.5 88 171-260 19-111 (126)
225 4h7y_A Dual specificity protei 98.3 2.5E-05 8.5E-10 56.3 13.7 106 183-289 9-126 (161)
226 4h7y_A Dual specificity protei 98.3 1.7E-05 5.9E-10 57.1 12.1 110 216-328 8-131 (161)
227 1y8m_A FIS1; mitochondria, unk 98.1 0.00017 5.8E-09 51.6 14.0 85 254-338 36-124 (144)
228 3o48_A Mitochondria fission 1 98.1 8.6E-05 2.9E-09 52.4 12.1 83 256-338 39-125 (134)
229 3ffl_A Anaphase-promoting comp 98.0 6.1E-05 2.1E-09 55.5 10.3 27 225-251 65-91 (167)
230 3ffl_A Anaphase-promoting comp 98.0 4.9E-05 1.7E-09 56.0 9.4 131 122-267 23-165 (167)
231 1y8m_A FIS1; mitochondria, unk 97.8 0.0016 5.3E-08 46.7 14.0 74 186-260 38-114 (144)
232 3o48_A Mitochondria fission 1 97.8 0.00078 2.7E-08 47.6 12.0 72 187-259 40-114 (134)
233 4gns_B Protein CSD3, chitin bi 97.5 0.001 3.6E-08 61.9 12.2 112 203-317 265-397 (754)
234 3txn_A 26S proteasome regulato 97.4 0.011 3.7E-07 50.8 16.4 167 120-286 20-210 (394)
235 3mkq_A Coatomer beta'-subunit; 97.4 0.025 8.6E-07 53.8 20.9 157 128-315 608-773 (814)
236 4gns_B Protein CSD3, chitin bi 97.3 0.0046 1.6E-07 57.6 14.2 117 166-283 261-397 (754)
237 3txn_A 26S proteasome regulato 97.3 0.025 8.5E-07 48.6 17.6 168 154-321 20-211 (394)
238 3kae_A CDC27, possible protein 97.1 0.045 1.5E-06 40.3 18.3 165 154-324 34-241 (242)
239 1zbp_A Hypothetical protein VP 97.0 0.042 1.4E-06 44.0 14.6 58 163-220 7-64 (273)
240 3mkq_A Coatomer beta'-subunit; 96.9 0.06 2.1E-06 51.1 18.5 155 125-308 635-800 (814)
241 3mkq_B Coatomer subunit alpha; 96.9 0.023 7.9E-07 42.6 11.6 102 128-249 14-115 (177)
242 2ff4_A Probable regulatory pro 96.8 0.035 1.2E-06 47.9 14.5 108 197-319 125-233 (388)
243 1zbp_A Hypothetical protein VP 96.8 0.031 1.1E-06 44.8 12.6 121 128-255 6-132 (273)
244 3spa_A Mtrpol, DNA-directed RN 96.7 0.037 1.3E-06 53.1 14.2 99 186-287 126-231 (1134)
245 4b4t_P 26S proteasome regulato 96.7 0.3 1E-05 42.9 21.4 97 223-319 137-246 (445)
246 4b4t_R RPN7, 26S proteasome re 96.7 0.015 5.2E-07 50.9 10.9 99 154-252 132-237 (429)
247 1ya0_A SMG-7 transcript varian 96.6 0.02 6.9E-07 50.9 11.1 79 225-303 154-232 (497)
248 3mkq_B Coatomer subunit alpha; 96.6 0.15 5.2E-06 38.1 14.5 110 151-283 6-115 (177)
249 3spa_A Mtrpol, DNA-directed RN 96.5 0.091 3.1E-06 50.5 15.3 98 153-253 127-231 (1134)
250 1ya0_A SMG-7 transcript varian 96.4 0.037 1.3E-06 49.2 11.9 79 258-336 153-231 (497)
251 2ff4_A Probable regulatory pro 96.4 0.06 2.1E-06 46.4 13.0 111 160-285 122-233 (388)
252 4b4t_S RPN3, 26S proteasome re 96.4 0.17 5.8E-06 44.8 15.5 191 127-326 144-379 (523)
253 1qsa_A Protein (soluble lytic 96.0 0.88 3E-05 41.7 20.1 125 194-319 221-347 (618)
254 4fhn_B Nucleoporin NUP120; pro 96.0 0.42 1.4E-05 47.5 18.3 144 125-273 818-987 (1139)
255 3kae_A CDC27, possible protein 95.9 0.34 1.2E-05 35.8 19.3 163 120-289 34-240 (242)
256 4b4t_R RPN7, 26S proteasome re 95.8 0.061 2.1E-06 47.1 10.4 100 118-217 130-238 (429)
257 4b4t_S RPN3, 26S proteasome re 95.8 0.034 1.2E-06 49.1 8.5 126 163-290 146-303 (523)
258 4fhn_B Nucleoporin NUP120; pro 95.6 0.37 1.3E-05 47.8 16.1 146 158-308 817-988 (1139)
259 4b4t_P 26S proteasome regulato 94.7 2.1 7.1E-05 37.6 19.5 165 120-286 57-247 (445)
260 1qsa_A Protein (soluble lytic 94.0 3.6 0.00012 37.7 22.6 187 125-316 220-438 (618)
261 4ady_A RPN2, 26S proteasome re 93.5 1.8 6.3E-05 41.5 14.2 196 120-318 456-656 (963)
262 2wpv_A GET4, UPF0363 protein Y 90.7 6.3 0.00022 32.5 18.3 21 299-319 196-216 (312)
263 4ady_A RPN2, 26S proteasome re 88.3 12 0.00041 36.1 14.1 117 132-251 387-518 (963)
264 3esl_A Checkpoint serine/threo 87.8 5 0.00017 30.6 9.3 65 188-253 81-145 (202)
265 4gq2_M Nucleoporin NUP120; bet 87.0 15 0.0005 35.8 14.4 52 159-214 816-867 (950)
266 4gq2_M Nucleoporin NUP120; bet 85.1 24 0.00082 34.3 14.8 35 292-326 898-933 (950)
267 1wy6_A Hypothetical protein ST 84.2 6.6 0.00023 28.0 7.6 53 233-285 101-153 (172)
268 3ax2_A Mitochondrial import re 83.3 5 0.00017 24.9 6.0 35 296-330 22-56 (73)
269 1wy6_A Hypothetical protein ST 82.9 11 0.00036 26.9 9.7 52 198-251 102-153 (172)
270 3lpz_A GET4 (YOR164C homolog); 82.8 20 0.00067 29.9 18.6 23 297-319 193-215 (336)
271 4a1g_A Mitotic checkpoint seri 81.3 9.9 0.00034 27.5 8.0 46 242-287 84-131 (152)
272 3lvg_A Clathrin heavy chain 1; 79.8 9.3E-05 3.2E-09 64.2 -21.8 39 265-303 237-275 (624)
273 3t5v_B Nuclear mRNA export pro 79.8 8.4 0.00029 33.7 8.6 66 191-256 180-254 (455)
274 2wvi_A Mitotic checkpoint seri 79.7 8.4 0.00029 28.3 7.3 31 223-253 96-126 (164)
275 2ijq_A Hypothetical protein; s 78.7 17 0.00058 26.6 8.9 61 226-286 35-104 (161)
276 3esl_A Checkpoint serine/threo 76.5 23 0.00079 27.0 12.6 65 223-288 80-146 (202)
277 3ax2_A Mitochondrial import re 76.3 7.9 0.00027 24.0 5.3 28 193-220 23-50 (73)
278 2ijq_A Hypothetical protein; s 73.5 24 0.00082 25.8 8.2 60 261-320 36-104 (161)
279 3t5x_A PCI domain-containing p 73.0 11 0.00038 28.8 6.8 81 187-275 14-97 (203)
280 2w2u_A Hypothetical P60 katani 72.8 4.8 0.00016 25.7 3.9 16 165-180 31-46 (83)
281 3t5x_A PCI domain-containing p 71.9 13 0.00045 28.4 6.9 83 221-311 12-99 (203)
282 2v6y_A AAA family ATPase, P60 71.7 5.2 0.00018 25.6 3.9 16 165-180 23-38 (83)
283 4aez_C MAD3, mitotic spindle c 71.3 27 0.00094 27.0 8.5 49 205-253 132-180 (223)
284 2wpv_A GET4, UPF0363 protein Y 71.0 43 0.0015 27.6 20.3 25 223-247 134-158 (312)
285 2qx5_A Nucleoporin NIC96; mRNA 70.9 66 0.0023 29.7 12.9 30 294-324 539-570 (661)
286 2crb_A Nuclear receptor bindin 69.4 11 0.00037 24.4 4.8 23 261-283 19-41 (97)
287 3ubw_A 14-3-3E, 14-3-3 protein 69.3 41 0.0014 26.7 12.9 162 122-285 34-227 (261)
288 3t5v_B Nuclear mRNA export pro 69.2 13 0.00044 32.5 7.0 89 202-290 141-254 (455)
289 1om2_A Protein (mitochondrial 68.9 8.6 0.00029 25.2 4.4 28 262-289 25-52 (95)
290 2br9_A 14-3-3E, 14-3-3 protein 66.4 45 0.0015 26.1 11.9 44 121-164 7-51 (234)
291 3lvg_A Clathrin heavy chain 1; 66.3 0.0036 1.2E-07 54.6 -15.4 49 232-281 238-286 (624)
292 1om2_A Protein (mitochondrial 66.2 12 0.00042 24.5 4.7 29 192-220 25-53 (95)
293 2crb_A Nuclear receptor bindin 66.0 12 0.00041 24.3 4.5 25 190-214 18-42 (97)
294 4b4t_O 26S proteasome regulato 64.9 44 0.0015 28.5 9.5 61 259-319 129-197 (393)
295 3uzd_A 14-3-3 protein gamma; s 64.2 51 0.0018 26.0 12.1 43 122-164 7-50 (248)
296 2w2u_A Hypothetical P60 katani 63.8 25 0.00087 22.3 6.1 16 268-283 30-45 (83)
297 2cwy_A Hypothetical protein TT 63.2 28 0.00097 22.7 6.2 55 263-319 7-67 (94)
298 4a1g_A Mitotic checkpoint seri 61.7 42 0.0015 24.2 8.3 50 204-253 82-131 (152)
299 2rpa_A Katanin P60 ATPase-cont 61.2 8.3 0.00028 24.2 3.1 29 120-148 13-41 (78)
300 4a5x_A MITD1, MIT domain-conta 59.2 14 0.00047 23.7 4.1 16 235-250 28-43 (86)
301 2v6y_A AAA family ATPase, P60 58.0 33 0.0011 21.7 6.3 23 262-284 16-38 (83)
302 2cwy_A Hypothetical protein TT 55.2 41 0.0014 21.9 6.1 22 196-217 10-31 (94)
303 4a5x_A MITD1, MIT domain-conta 51.4 45 0.0015 21.3 6.2 24 262-285 21-44 (86)
304 3lpz_A GET4 (YOR164C homolog); 51.3 1.1E+02 0.0036 25.6 25.4 62 223-284 136-214 (336)
305 2rpa_A Katanin P60 ATPase-cont 49.6 20 0.00068 22.5 3.5 26 260-285 15-40 (78)
306 1wfd_A Hypothetical protein 15 49.6 51 0.0017 21.4 6.2 25 261-285 19-43 (93)
307 2npm_A 14-3-3 domain containin 47.7 1E+02 0.0036 24.5 15.1 45 120-164 29-77 (260)
308 4b4t_O 26S proteasome regulato 45.7 1.4E+02 0.0048 25.4 11.0 92 160-251 83-197 (393)
309 3bu8_A Telomeric repeat-bindin 44.8 1E+02 0.0036 23.7 8.3 44 160-203 121-164 (235)
310 2cfu_A SDSA1; SDS-hydrolase, l 43.8 60 0.0021 30.0 7.3 51 257-307 449-499 (658)
311 3bu8_A Telomeric repeat-bindin 43.8 1.1E+02 0.0037 23.6 8.5 65 239-303 88-160 (235)
312 3re2_A Predicted protein; meni 43.5 1.5E+02 0.0051 25.0 9.6 45 172-216 276-325 (472)
313 2cfu_A SDSA1; SDS-hydrolase, l 43.4 52 0.0018 30.4 6.8 49 224-272 450-498 (658)
314 3mv2_A Coatomer subunit alpha; 41.3 1.5E+02 0.0051 24.5 16.3 34 295-328 211-244 (325)
315 2ynq_A ESSB; membrane protein, 41.1 1E+02 0.0034 22.4 7.8 83 194-282 15-98 (161)
316 3myv_A SUSD superfamily protei 40.9 65 0.0022 28.1 6.8 28 292-319 191-218 (454)
317 2v6x_A Vacuolar protein sortin 40.5 68 0.0023 20.2 6.2 25 261-285 17-41 (85)
318 2dl1_A Spartin; SPG20, MIT, st 39.8 26 0.00089 23.9 3.1 14 271-284 36-49 (116)
319 3mkr_B Coatomer subunit alpha; 39.7 1.6E+02 0.0054 24.3 15.5 32 295-326 202-233 (320)
320 2v6x_A Vacuolar protein sortin 39.5 61 0.0021 20.5 4.8 14 235-248 25-38 (85)
321 1wfd_A Hypothetical protein 15 39.4 60 0.0021 21.0 4.8 15 275-289 40-54 (93)
322 3mv2_A Coatomer subunit alpha; 38.6 1.7E+02 0.0057 24.2 13.0 27 231-257 215-241 (325)
323 3re2_A Predicted protein; meni 38.0 1.8E+02 0.0063 24.5 9.6 63 223-285 255-324 (472)
324 3kez_A Putative sugar binding 37.7 74 0.0025 27.8 6.6 28 292-319 197-224 (461)
325 2cpt_A SKD1 protein, vacuolar 37.1 62 0.0021 22.1 4.8 18 268-285 29-46 (117)
326 3myv_A SUSD superfamily protei 36.3 93 0.0032 27.1 7.0 30 222-251 189-218 (454)
327 2cpt_A SKD1 protein, vacuolar 34.1 53 0.0018 22.4 4.0 18 302-319 29-46 (117)
328 3mcx_A SUSD superfamily protei 33.5 80 0.0027 27.7 6.2 29 292-320 203-231 (477)
329 3bqo_A Telomeric repeat-bindin 33.5 32 0.0011 26.0 3.0 24 232-255 126-149 (211)
330 3u84_A Menin; MLL, JUND, ledgf 33.4 2.4E+02 0.008 24.4 11.4 44 242-285 298-346 (550)
331 4aez_C MAD3, mitotic spindle c 33.3 1.7E+02 0.0057 22.7 11.8 77 138-220 96-183 (223)
332 3mcx_A SUSD superfamily protei 33.3 1.1E+02 0.0038 26.8 7.1 31 222-252 201-231 (477)
333 3eab_A Spastin; spastin, MIT, 33.3 23 0.00077 22.9 1.9 14 203-216 13-26 (89)
334 3fap_B FRAP, FKBP12-rapamycin 32.9 1E+02 0.0035 20.1 5.4 18 162-179 19-36 (94)
335 3kez_A Putative sugar binding 32.8 1E+02 0.0035 26.9 6.7 28 292-319 339-366 (461)
336 2npu_A FKBP12-rapamycin comple 31.3 91 0.0031 21.6 4.8 17 128-144 49-65 (126)
337 3lew_A SUSD-like carbohydrate 31.3 1.1E+02 0.0037 27.0 6.7 29 292-320 204-232 (495)
338 2uwj_G Type III export protein 30.6 1.2E+02 0.0041 20.2 8.4 77 234-316 17-93 (115)
339 3u84_A Menin; MLL, JUND, ledgf 29.9 2.7E+02 0.0093 24.0 11.3 45 172-216 298-347 (550)
340 1g1e_B SIN3A; four-helix bundl 29.1 1.2E+02 0.004 19.5 6.9 57 273-329 10-80 (89)
341 2npu_A FKBP12-rapamycin comple 28.9 1.5E+02 0.005 20.6 6.5 19 231-249 48-66 (126)
342 2vkj_A TM1634; membrane protei 28.1 1.2E+02 0.0042 19.4 6.4 27 295-321 57-83 (106)
343 3lew_A SUSD-like carbohydrate 26.6 1.7E+02 0.0057 25.8 7.0 31 222-252 202-232 (495)
344 2wvi_A Mitotic checkpoint seri 25.9 1.9E+02 0.0066 21.0 11.5 76 139-220 43-129 (164)
345 3bqo_A Telomeric repeat-bindin 25.4 67 0.0023 24.3 3.5 39 160-198 124-162 (211)
346 2p58_C Putative type III secre 24.5 1.6E+02 0.0055 19.6 10.7 81 229-315 13-93 (116)
347 3qnk_A Putative lipoprotein; a 21.9 2E+02 0.0067 25.5 6.6 28 293-320 184-211 (517)
348 2dl1_A Spartin; SPG20, MIT, st 21.5 1.4E+02 0.0048 20.3 4.2 15 203-217 19-33 (116)
349 3uzd_A 14-3-3 protein gamma; s 21.1 3.1E+02 0.01 21.6 18.2 44 154-197 5-49 (248)
350 3jq1_A SUSD superfamily protei 20.9 1.3E+02 0.0044 26.5 5.1 27 293-319 182-208 (481)
351 2npm_A 14-3-3 domain containin 20.9 3.2E+02 0.011 21.7 17.9 44 154-197 29-76 (260)
352 2uwj_G Type III export protein 20.9 1.9E+02 0.0066 19.2 8.4 49 229-282 45-93 (115)
353 2br9_A 14-3-3E, 14-3-3 protein 20.7 3E+02 0.01 21.4 17.8 45 153-197 5-50 (234)
354 4gq4_A Menin; tumor suppressor 20.1 4.2E+02 0.015 22.9 11.4 44 242-285 283-331 (489)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-31 Score=215.54 Aligned_cols=201 Identities=14% Similarity=0.072 Sum_probs=179.9
Q ss_pred CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16611 113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 192 (341)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 192 (341)
|.++ ..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.
T Consensus 2 p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp --CC---HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4455 7789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-----------CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 193 LALCCFYS-----------QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN 261 (341)
Q Consensus 193 la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 261 (341)
+|.++... |++++|+..|+++++++|++ ..++..+|.++...|++++|+..|+++++++ +++.++.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 99999999 99999999999999999999 9999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
++|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998753
No 2
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.1e-30 Score=225.23 Aligned_cols=217 Identities=10% Similarity=0.011 Sum_probs=207.0
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-PEVALLFYRRLLQMGLYNAELFNNLALCC 197 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 197 (341)
..++..+|.++...|++++|+..|++++..+|++..+|+.+|.++..+|+ +++|+.+|++++.++|++..+|+++|.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHH
Q psy16611 198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EGHIERA 276 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A 276 (341)
...|++++|+.+|++++.++|++ ..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.. .|.+++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~--~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999 5665788
Q ss_pred -----HHHHHHHHHhCCCchhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 277 -----STYLQAAAASSPYLYETHYNQAVISNLAG--DLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 277 -----~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
+.+|++++.++|++..+|++++.++...| ++++|+..++++ +.+|++..++..++.+...+
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999999999988 699999999998 99999999988888776554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.5e-30 Score=223.28 Aligned_cols=226 Identities=21% Similarity=0.282 Sum_probs=214.9
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+...|++. ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..
T Consensus 162 l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 162 IETQPNFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 34456665 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (341)
++..+|.++...|++++|+..|+++++.+|.+ +.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
..|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+++++++|++..++..++.+...++
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998876543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6e-29 Score=218.19 Aligned_cols=258 Identities=20% Similarity=0.225 Sum_probs=217.5
Q ss_pred CCCchHhhhcccccccccCCccchhHhhhhhh----------------hhhcccCCCCCchhHhhhcHHHHHHHcCCchH
Q psy16611 74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLG----------------TASMLSQPDGPFIQVSRLNLAKIFEGLNNMPM 137 (341)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (341)
..|.+++|+..++++....|.... ....++ ..++...|++. ..+..+|.++...|++++
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFID--GYINLAAALVAAGDMEGAVQAYVSALQYNPDLY---CVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT---HHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHccCHHH
Confidence 445667777776665444443321 111111 12334466666 678888899999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16611 138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 217 (341)
Q Consensus 138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 217 (341)
|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHH
Q psy16611 218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQ 297 (341)
Q Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 297 (341)
|++ ..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.+..++..+
T Consensus 234 p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 988 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
+.++...|++++|+..|++++++.|++..++..++.+....
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988888888776543
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=3.6e-29 Score=217.74 Aligned_cols=219 Identities=15% Similarity=0.105 Sum_probs=196.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+.+|++++..+|++..++..+|.+|..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHH----------HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWY----------NISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLE 267 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 267 (341)
.|++++|+.+|++++++.|.. ...+. .+|.++...|++++|+.+|+++++.+|. ++.++..+|.++
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKY--KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHH--HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccc--hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999999999998887 54444 4488999999999999999999999998 889999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 340 (341)
...|++++|+..|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|++..++..++.+....+.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888766543
No 6
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.97 E-value=4e-29 Score=204.62 Aligned_cols=216 Identities=15% Similarity=0.244 Sum_probs=191.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|++++|+.+++++++..|.+ ..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
|++++...|++..++..+|.++...|++++|+.+|+++++++|++..++..+..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999988877654
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=7.4e-29 Score=199.92 Aligned_cols=186 Identities=15% Similarity=0.050 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16611 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 229 (341)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 230 SHVAIGI-----------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 230 a~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
|.++... |++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++ +++.++.++|
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 299 VISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
.++...|++++|+..|+++++++|++..++..++.+....
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999888876443
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-28 Score=209.14 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=226.0
Q ss_pred CCCchHhhhcccccccccCCccchh-----Hhhhhhh---------hhhcccCCCCCchhHhhhcHHHHHHHcC-CchHH
Q psy16611 74 RGGTLEQSLKTPRTAKSARPLTSQA-----ARTIRLG---------TASMLSQPDGPFIQVSRLNLAKIFEGLN-NMPMS 138 (341)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A 138 (341)
..|.+++|+..++......|..... ......| ..++...|.++ ..+..+|.++...| ++++|
T Consensus 34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A 110 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP---VSWFAVGCYYLMVGHKNEHA 110 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---HHHHHHHHHHHHSCSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHhhhhHHHH
Confidence 3467777877766644443333211 1111111 23345677777 78999999999999 99999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc
Q psy16611 139 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218 (341)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 218 (341)
+.+|++++..+|++..++..+|.++...|++++|+..|++++...|.+...+..+|.++...|++++|+.++++++...|
T Consensus 111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 190 (330)
T 3hym_B 111 RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190 (330)
T ss_dssp HHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSID---------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
.+ ..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+|+++++++|+
T Consensus 191 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 191 ED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 99 9999999999999999999999999999986 667889999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
+..++..+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988865
No 9
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=3.3e-29 Score=217.96 Aligned_cols=226 Identities=15% Similarity=0.105 Sum_probs=202.6
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 188 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 188 (341)
+...|.++ ..+..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++..|.+..
T Consensus 92 l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (365)
T 4eqf_A 92 ILQDPGDA---EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168 (365)
T ss_dssp HHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHC
T ss_pred HHhCcCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchH
Confidence 34456665 789999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHH----------HHHHHHcCChhHHHHHHHHHHhhccc--cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16611 189 LFNNL----------ALCCFYSQQYDMVVTCFERALSLALN--ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256 (341)
Q Consensus 189 ~~~~l----------a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 256 (341)
.+..+ |.++...|++++|+.+|++++...|. + ..++..+|.++...|++++|+..|+++++.+|++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID--PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp C-------------------CCHHHHHHHHHHHHHHHHSCSSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 66554 99999999999999999999999999 7 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH------------ 324 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------ 324 (341)
..++..+|.++...|++++|+..|+++++++|++..++.++|.+|...|++++|+.+|++++++.|++
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 326 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS 326 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred HHHHHHHHHHHHHhh
Q psy16611 325 SYSWDILRKLEQYFS 339 (341)
Q Consensus 325 ~~~~~~l~~~~~~~~ 339 (341)
..+|..++.+...++
T Consensus 327 ~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 327 GNIWAALRIALSLMD 341 (365)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 566777777665543
No 10
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-28 Score=201.78 Aligned_cols=212 Identities=9% Similarity=0.027 Sum_probs=201.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-------HHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------AELFNN 192 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~ 192 (341)
..+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+.+|++++...|.+ ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 678889999999999999999999999999 899999999999999999999999999999988876 789999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh--------------------------hccccchHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16611 193 LALCCFYSQQYDMVVTCFERALS--------------------------LALNENAADVWYNISHVAIGISDTRLAIQCL 246 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (341)
+|.++...|++++|+.+|++++. .+|.. ..++..+|.++...|++++|+..|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999 56666 889999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q psy16611 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLH----- 321 (341)
Q Consensus 247 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----- 321 (341)
+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++
T Consensus 163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 242 (258)
T 3uq3_A 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHH
Q psy16611 322 -PGHSYSWDILRKL 334 (341)
Q Consensus 322 -p~~~~~~~~l~~~ 334 (341)
|++..++..+..+
T Consensus 243 ~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 243 GSSAREIDQLYYKA 256 (258)
T ss_dssp TTTHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHh
Confidence 9988888777654
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=7.5e-28 Score=209.38 Aligned_cols=220 Identities=18% Similarity=0.175 Sum_probs=180.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhhcccc-------------------------------------------------chHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNE-------------------------------------------------NAADVWYNIS 230 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~-------------------------------------------------~~~~~~~~la 230 (341)
.|++++|+..|++++...|.. ....++..+|
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 777776666666666554432 0278889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES 310 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 310 (341)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------HHHHHHHHHHHHHhh
Q psy16611 311 YNIVKKSLDLHPGH-----------SYSWDILRKLEQYFS 339 (341)
Q Consensus 311 ~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~ 339 (341)
+.+|++++.+.|++ ..++..++.+...++
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999888 788888888776654
No 12
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=8.2e-29 Score=215.30 Aligned_cols=225 Identities=11% Similarity=0.037 Sum_probs=209.7
Q ss_pred hhhcccCCCCCchhHhhhcHHHHHHHcCC-chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16611 106 TASMLSQPDGPFIQVSRLNLAKIFEGLNN-MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 184 (341)
..++..+|++. .+|.++|.++...|+ +++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|
T Consensus 121 ~~al~l~P~~~---~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 121 RDAIELNAANY---TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHhCccCH---HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 34566788887 889999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCHH
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG-ISDTRLA-----IQCLHLALSIDSSHGL 258 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~ 258 (341)
++..+|+++|.++...|++++|+.+|+++++++|.+ ..+|+++|.++.. .|.+++| +.+|+++++++|++..
T Consensus 198 ~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 198 KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999999999999 9999999999999 5655787 5999999999999999
Q ss_pred HHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhcCCCCHH
Q psy16611 259 SQNNLAVLEAREG--HIERASTYLQAAAASSPYLYETHYNQAVISNLAG---------DLQESYNIVKKS-LDLHPGHSY 326 (341)
Q Consensus 259 ~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~a-l~~~p~~~~ 326 (341)
+|++++.++...| ++++|+..++++ +.+|++..++..+|.+|.++| .+++|+.+|+++ ++++|....
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~ 354 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence 9999999999988 699999999998 899999999999999999985 359999999999 999999999
Q ss_pred HHHHHHHHHH
Q psy16611 327 SWDILRKLEQ 336 (341)
Q Consensus 327 ~~~~l~~~~~ 336 (341)
.|..+.....
T Consensus 355 ~w~~~~~~l~ 364 (382)
T 2h6f_A 355 YWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987776543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=204.92 Aligned_cols=229 Identities=11% Similarity=0.055 Sum_probs=215.6
Q ss_pred hhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q psy16611 106 TASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGL 184 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 184 (341)
...+...|.++ ..+..++.++...|++++|+..++++++.+|++..+++.+|.++...| ++++|+.+|++++..+|
T Consensus 46 ~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 122 (330)
T 3hym_B 46 SVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122 (330)
T ss_dssp HHHHHHCTTCT---TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHcCCCCh---hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 34455677776 667778899999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
.+..++..+|.++...|++++|+.+|++++...|.. ...+..+|.++...|++++|+..|+++++.+|.+..++..+|
T Consensus 123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200 (330)
T ss_dssp TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 265 VLEAREGHIERASTYLQAAAASS---------PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.++...|++++|+..++++++.. |.+..++..+|.++...|++++|+.+|++++++.|++..++..++.+.
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 280 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 99999999999999999999986 666789999999999999999999999999999999999999999887
Q ss_pred HHhh
Q psy16611 336 QYFS 339 (341)
Q Consensus 336 ~~~~ 339 (341)
...+
T Consensus 281 ~~~g 284 (330)
T 3hym_B 281 SLMG 284 (330)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 6654
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.97 E-value=2.4e-27 Score=195.34 Aligned_cols=211 Identities=16% Similarity=0.122 Sum_probs=204.0
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh--hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16611 199 YSQQYDMVVTCFERALS--LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 276 (341)
..|++++|+.+|++++. ..|.. ..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999 77777 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
+..++++++..|.+..++..++.++...|++++|..++++++++.|+++.++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877654
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.96 E-value=7.1e-28 Score=189.01 Aligned_cols=173 Identities=14% Similarity=0.165 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH
Q psy16611 151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230 (341)
Q Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 230 (341)
+++.+|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+++++...|.. ..++..+|
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--AEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--HHHHHHHH
Confidence 3567788888888888888888888888888888888888888888888888888888888888888888 88888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES 310 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 310 (341)
.++...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++++|.+..++.++|.+|..+|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCCCH
Q psy16611 311 YNIVKKSLDLHPGHS 325 (341)
Q Consensus 311 ~~~~~~al~~~p~~~ 325 (341)
+.+|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 888888888888654
No 16
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.96 E-value=4.2e-27 Score=190.08 Aligned_cols=210 Identities=16% Similarity=0.058 Sum_probs=202.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CChhHHHHHHHHHHh--hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16611 200 S-QQYDMVVTCFERALS--LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 200 ~-~~~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 276 (341)
. |++++|+.++++++. ..|.. ..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 9 999999999999999 55666 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 277 STYLQAAAASSP-YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 277 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
+..++++++..| .+...+..++.++...|+.++|..+++.+...+|+++.+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999 9999999999999999999999999999999999999887665
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.1e-26 Score=200.81 Aligned_cols=214 Identities=10% Similarity=0.019 Sum_probs=202.3
Q ss_pred cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16611 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 203 (341)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 203 (341)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccchHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHH
Q psy16611 204 DMVVTCFERALSLALNENAADVWY------------NISHVAIGISDTRLAIQCLHLALSIDSSHGL----SQNNLAVLE 267 (341)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~ 267 (341)
++|+..|+++++..|.. ...+. .+|.++...|++++|+..|+++++..|++.. ++..+|.++
T Consensus 205 ~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999998 66543 4488899999999999999999999999874 466799999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|++..++..+..+...++
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887765
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.1e-26 Score=200.83 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=204.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhcc---ccchHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLAL---NENAADVWYNI------------SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~---~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
.|++++|+..|++++...| .+ ..++..+ |.++...|++++|+..++++++..|.+..++..+|
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEE--KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccCh--HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999 77 7777766 79999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++..++..+..+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887655443
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=9.3e-27 Score=207.99 Aligned_cols=212 Identities=17% Similarity=0.119 Sum_probs=202.8
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.+|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAA---DVWYNI------------SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
..|++++|+.+|++++...|.+ . .++..+ |.++...|++++|+..|+++++..|.+..++..+
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSE--NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999987 6 665555 6779999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
|.+|...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++.+.|++...+..+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998877663
No 20
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2.3e-27 Score=197.63 Aligned_cols=222 Identities=12% Similarity=0.099 Sum_probs=199.0
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 184 (341)
+...|.++ ..+..+|.++...|++++|+..|++++. .|.+ ..++..+|.++...|++++|+.+|+++++.+|
T Consensus 30 l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 30 EAKKYNSP---YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp HHTTCCCS---TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 34456666 6789999999999999999999999999 4433 45699999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
.+..++..+|.++...|++++|+.+|+++++.+|.+ ..+++.+|......+++++|+..|+++++.+|++..++..+|
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 183 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 999999999999999999999999999999999999 999999994444556999999999999999999999999999
Q ss_pred HHHHHhCC---HHHHHHHHHHHHHhC---CCc-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 265 VLEAREGH---IERASTYLQAAAASS---PYL-----YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 265 ~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
.++...|+ +++|+..|++++++. |+. ..++..+|.+|...|++++|+.+|+++++++|+++.++..+..
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 99999999 999999999999886 442 2588899999999999999999999999999999999988877
Q ss_pred HHH
Q psy16611 334 LEQ 336 (341)
Q Consensus 334 ~~~ 336 (341)
+..
T Consensus 264 ~~~ 266 (272)
T 3u4t_A 264 KLE 266 (272)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=5.6e-27 Score=200.26 Aligned_cols=224 Identities=16% Similarity=0.107 Sum_probs=198.5
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF 190 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 190 (341)
..|.++ ..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++...|.+...+
T Consensus 50 ~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 126 (327)
T 3cv0_A 50 AAPERE---EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126 (327)
T ss_dssp HCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred hCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence 345554 67888889999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHH--------------HH-HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 191 NNL--------------AL-CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 191 ~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
..+ +. ++...|++++|+.++++++...|.+ ..++..+|.++...|++++|+..++++++.+|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 204 (327)
T 3cv0_A 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND--AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204 (327)
T ss_dssp -------------------CCTTSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 666 66 6778889999999999999999988 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------
Q psy16611 256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG------------ 323 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------ 323 (341)
+..++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|++++.+.|+
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy16611 324 HSYSWDILRKLEQYFS 339 (341)
Q Consensus 324 ~~~~~~~l~~~~~~~~ 339 (341)
+..++..++.+....+
T Consensus 285 ~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcC
Confidence 7888888887766543
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.96 E-value=6e-27 Score=183.70 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=166.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|+++|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..+.+++...|.+..++..+|.++..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.++++.|+..+.+++...|.+ ..++..+|.++...|++++|+..|+++++.+|.++.+++++|.+|..+|++++|+..
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCch
Q psy16611 280 LQAAAASSPYLY 291 (341)
Q Consensus 280 ~~~al~~~p~~~ 291 (341)
|+++++++|++.
T Consensus 164 ~~~al~~~p~~a 175 (184)
T 3vtx_A 164 FKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHhCCccCH
Confidence 999999998764
No 23
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.8e-26 Score=213.52 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=207.0
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF 190 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 190 (341)
..|++. ..+..+|.+|...|++++|+.+|+++++.+|.+..+|..++.+|...|++++|++.|++++...|.+..++
T Consensus 368 ~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 368 RHPEKA---VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp HCTTSH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred hCcccH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 455555 77888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-HHHHHHH
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSH-GLSQNNL 263 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l 263 (341)
..++.+|...|++++|+.+|+++++..|.+ ..+|..++.++...|++++|+..|+++++. +|++ ..+|..+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999988 5654 7899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
|.++...|++++|+..|+++++.+|++..++..++.+|...|++++|..+|+++++++|++..++..++.+.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887653
No 24
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.3e-26 Score=207.11 Aligned_cols=215 Identities=10% Similarity=0.028 Sum_probs=203.5
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 201 (341)
++.+|.++...|++++|+..|+++++..|.+..++..+|.+|...|++++|+..|++++..+|.+..++..+|.++...|
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhccccchHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHH
Q psy16611 202 QYDMVVTCFERALSLALNENAADVWYNI------------SHVAIGISDTRLAIQCLHLALSIDSSHG----LSQNNLAV 265 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~ 265 (341)
++++|+.+|++++...|++ ...+..+ |.++...|++++|+.+|+++++..|.++ ..+..+|.
T Consensus 226 ~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 9999999999999999998 7776655 9999999999999999999999999985 47899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
++...|++++|+..++++++++|++..+|..+|.++...|++++|+..|+++++++|++..++..++.+...+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998776554
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.4e-26 Score=197.76 Aligned_cols=218 Identities=13% Similarity=0.103 Sum_probs=203.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNI--------------SH-VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 264 (341)
.|++++|+..+++++...|.. ...+..+ +. ++...|++++|+..++++++..|.+..++..+|
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQY--EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT--TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcc--HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999988 6666665 66 688999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..++.+....+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998888776543
No 26
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.95 E-value=1e-26 Score=188.82 Aligned_cols=210 Identities=10% Similarity=0.035 Sum_probs=189.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..++..|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 7899999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAA-------DVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAR 269 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 269 (341)
..|++++|+.+|+++++..|++ . .++..+|.++...|++++|+..|+++++.+|+ +..++.++|.++..
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGN--ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999998 6 67999999999999999999999999999999 89999999999976
Q ss_pred hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
.| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|++..+...+..+...+
T Consensus 166 ~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 166 NG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 65 445677777766664433 445566678899999999999999999999999998887543
No 27
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.95 E-value=2.8e-26 Score=206.12 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy16611 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP-EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 212 (341)
Q Consensus 134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 212 (341)
++++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|++..+|+.+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356666777777777777777777778777777777 7788888887777777777777788877777888888888888
Q ss_pred HHhhccccchHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------CCHHH
Q psy16611 213 ALSLALNENAADVWYNISHVAIGI---------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE--------GHIER 275 (341)
Q Consensus 213 al~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~ 275 (341)
+++++|+ ..++.++|.++... |++++|+..|+++++++|++..+|+.+|.+|... |++++
T Consensus 163 al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 7777766 47777777777777 7777888888888777777777777777777777 77778
Q ss_pred HHHHHHHHHHhCC---CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 276 ASTYLQAAAASSP---YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 276 A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
|+..|+++++++| ++..+|+++|.+|...|++++|+.+|+++++++|++..++..++.+...+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888877777 77777777888877778888888888888777777777777776665544
No 28
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.95 E-value=4.4e-27 Score=219.40 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (341)
.|+++++++++|.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++ ..++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 466667777777777777777777777777777777777777777777777777777777777777777777 777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQ 308 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 308 (341)
+|.++..+|++++|++.|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++.++|.++..+|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCC
Q psy16611 309 ESYNIVKKSLDLHP 322 (341)
Q Consensus 309 ~A~~~~~~al~~~p 322 (341)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 77777777766543
No 29
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.9e-25 Score=205.42 Aligned_cols=224 Identities=10% Similarity=0.014 Sum_probs=200.2
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF 190 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 190 (341)
..|.+. ..+..++.++...|++++|+..++++++..|++..++..+|.+|...|++++|+.+|+++++..|.+..+|
T Consensus 334 ~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 410 (597)
T 2xpi_A 334 IDPYNL---DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW 410 (597)
T ss_dssp HCTTCC---TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcccH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 345555 55667777777888888888888888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
..++.+|...|++++|+..|++++...|.+ ..++..++.+|...|++++|++.|+++++..|.++.++..+|.++...
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh------CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 271 GHIERASTYLQAAAAS------SPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 271 g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
|++++|+..|+++++. +|++ ..+|..++.++...|++++|+..|+++++++|++..++..++.+....+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 9999999999999988 5554 6789999999999999999999999999999999999988888766543
No 30
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.95 E-value=1.5e-26 Score=207.98 Aligned_cols=194 Identities=15% Similarity=0.103 Sum_probs=189.2
Q ss_pred HhhhcHHHHHHHcCCc-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNM-PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..++.+|.++...|++ ++|+.+|+++++.+|++..+++.+|.+|...|++++|+.+|+++++.+|+ ..++..+|.++.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~ 181 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence 8899999999999999 99999999999999999999999999999999999999999999999999 799999999999
Q ss_pred Hc---------CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCC---CCHH
Q psy16611 199 YS---------QQYDMVVTCFERALSLALNENAADVWYNISHVAIGI--------SDTRLAIQCLHLALSIDS---SHGL 258 (341)
Q Consensus 199 ~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~ 258 (341)
.. |++++|+.+|+++++++|++ ..+|+++|.+|... |++++|+..|+++++++| .++.
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 99 99999999999999999999 99999999999999 999999999999999999 9999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
+++++|.+|...|++++|+..|+++++++|++..++..++.++...|++++|+..+.+
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999987654
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=3.6e-26 Score=190.40 Aligned_cols=215 Identities=9% Similarity=0.021 Sum_probs=195.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLAL 195 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~ 195 (341)
..++..|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++. .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999 4433 456999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
++...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.+|+++++.+|.+..++..+|......+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTR--LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC--THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999955556679999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHH
Q psy16611 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGD---LQESYNIVKKSLDLH---PGH-----SYSWDILRKLEQY 337 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~ 337 (341)
|+..|+++++.+|++..++..+|.++...|+ +++|+..|++++++. |+. ..++..++.+...
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999886 442 2455666665543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=8.2e-25 Score=184.00 Aligned_cols=209 Identities=17% Similarity=0.087 Sum_probs=189.4
Q ss_pred hhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16611 118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 195 (341)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 195 (341)
...+...++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+..++..+|.
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~ 138 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHH
Confidence 3467778889999999999999999999976 599999999999999999999999999998 899999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNIS--HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 273 (341)
++...|++++|+..|+++++.+|+. .......+ .++...|++++|+..|+++++.+|+++.+++++|.++...|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDA--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999987 54433333 4445669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE-SYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
++|+..|+++++.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+.....+
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~ 277 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAK 277 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999999999999999999999999976 578999999999999987765443
No 33
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.94 E-value=1.7e-25 Score=181.66 Aligned_cols=154 Identities=15% Similarity=0.137 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 230 (341)
++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+.+|+++++.+|.+ ..++..+|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence 345555555555555555555555555555555 455555555555555555555555555555555555 55555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYETHYNQAVIS 301 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 301 (341)
.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..|+++++++|+ +..++.++|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 555555555555555555555555554 33555555555555555555555555555555 555555555555
Q ss_pred HHcCCH
Q psy16611 302 NLAGDL 307 (341)
Q Consensus 302 ~~~g~~ 307 (341)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 34
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=2.2e-25 Score=193.76 Aligned_cols=207 Identities=15% Similarity=0.126 Sum_probs=188.0
Q ss_pred cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q psy16611 109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG----- 183 (341)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 183 (341)
+...|.++ ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...
T Consensus 91 l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 91 VQQDPKHM---EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HHSCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred HHhCCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 33455555 7788889999999999999999999999999999999999999999888888888777766654
Q ss_pred --------------------------------------------CC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16611 184 --------------------------------------------LY--NAELFNNLALCCFYSQQYDMVVTCFERALSLA 217 (341)
Q Consensus 184 --------------------------------------------p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 217 (341)
|. +..++..+|.++...|++++|+.+|++++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44 67889999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-------
Q psy16611 218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------- 290 (341)
Q Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------- 290 (341)
|.+ ..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.+.|++
T Consensus 248 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 248 PND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred cCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 291 ----YETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 291 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
..+|..+|.++..+|++++|..+++++++.
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 789999999999999999999998877754
No 35
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.94 E-value=4.4e-26 Score=212.67 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=165.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.++.++|.++.++|++++|+..|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|++..+++++|.++..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
+|++++|+++|+++++++|++ ..+++++|.+|..+|++++|+..|+++++++|++..++.++|.++..+|++++|++.
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q psy16611 280 LQAAAASSPY 289 (341)
Q Consensus 280 ~~~al~~~p~ 289 (341)
+++++++.|+
T Consensus 168 ~~kal~l~~~ 177 (723)
T 4gyw_A 168 MKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhChh
Confidence 9999987554
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=204.29 Aligned_cols=216 Identities=17% Similarity=0.134 Sum_probs=206.0
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL------SQNNLAVLEAR--- 269 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~--- 269 (341)
..|++++|+.++++++...|.+ ..++..+|.++...|++++|+..|+++++..|.+.. ++..+|.++..
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HcCCHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999 999999999999999999999999999999888755 99999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
.|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++++|+++.++..+..+..
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876655443
No 37
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-25 Score=202.08 Aligned_cols=221 Identities=12% Similarity=0.041 Sum_probs=211.0
Q ss_pred CchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16611 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 195 (341)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 195 (341)
+.....+..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..|++++...|.+..++..+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 344478899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
++...|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchh------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 276 ASTYLQAAAASSPYLYE------THYNQAVISNL---AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
|+..|++++...|++.. ++..+|.++.. .|++++|+..|++++...|++..++..++.+....+
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 99999999999988865 99999999999 999999999999999999999999999888876543
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5.3e-25 Score=200.94 Aligned_cols=207 Identities=14% Similarity=0.061 Sum_probs=101.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+..++..+|.++..
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHh---
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEARE--- 270 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~--- 270 (341)
.|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+..|+++++..|.+. ..++.+|.++...
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444 44444444444444555555555544444443322 1233334444444
Q ss_pred -------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 271 -------GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 271 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++....
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 5555555555555555555555555555555555555555555555555555554443
No 39
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.94 E-value=1.2e-24 Score=180.44 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHH
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAAD 224 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 224 (341)
.|.++..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+++..|++++|+..|++++...|++ ....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34444444444554444455555555555544444444 4444445555555555555555555554444432 2234
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHhCCHHHHHHH
Q psy16611 225 VWYNISHVAIG--------ISDTRLAIQCLHLALSIDSSHGLS-----------------QNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 225 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~ 279 (341)
+++.+|.++.. .|++++|+..|+++++..|++..+ ++.+|.+|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 44445555444 455555555555555544444333 37778888888888888888
Q ss_pred HHHHHHhCCC---chhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 280 LQAAAASSPY---LYETHYNQAVISNLA----------GDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 280 ~~~al~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++.+|+++.+......+
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 238 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8888887777 345777888888766 777888888888888888875544433333
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=6.6e-25 Score=200.33 Aligned_cols=217 Identities=10% Similarity=0.051 Sum_probs=205.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.++..+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++..
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 56888999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchh------HHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 280 LQAAAASSPYLYE------THYNQAVISNLA----------GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 280 ~~~al~~~p~~~~------~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
|+++++..|++.. .+..++.++... |++++|+.+|+++++.+|++..++..++.+....+
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999998876554 356778999999 99999999999999999999999999988876544
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=1.9e-24 Score=176.76 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=174.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|++++|+.++++++...|.+ ..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAG 305 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g 305 (341)
|+++++++|++..++..++.+....+
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999988887765544
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=8.9e-24 Score=170.47 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=177.9
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16611 148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227 (341)
Q Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (341)
..|+++.+++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|++++...|.+ ..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16611 228 NISHVAIGI-SDTRLAIQCLHLALS--IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304 (341)
Q Consensus 228 ~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 304 (341)
.+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 999999999 999999999999999 66777899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q psy16611 305 GDLQESYNIVKKSLDLHP-GHSYSWDILRKLEQY 337 (341)
Q Consensus 305 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 337 (341)
|++++|+.++++++...| ++...+..+..+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999 998888777666543
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=3e-24 Score=178.83 Aligned_cols=204 Identities=11% Similarity=0.043 Sum_probs=186.5
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
..|++++|+.+|+++++..|.+ ......++.+ ...|++++|+..+++++...|.+...+. ++.++...++.++|+.
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPND--PFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCC--hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHH
Confidence 9999999999999999999998 6655555544 6669999999999999999988866654 7778888899999999
Q ss_pred HHHHHHHhCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 279 YLQAAAASSPYL----YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 279 ~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.+++++...|.. ..++..+|.++...|++++|+.+|++++.++|++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 999998876643 678999999999999999999999999999997755
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=7.1e-24 Score=180.06 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=196.7
Q ss_pred hhhhcccCCCCCchhHhhhcHHHHHHH-------cCCc-------hHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCh
Q psy16611 105 GTASMLSQPDGPFIQVSRLNLAKIFEG-------LNNM-------PMSVKYYKLILK-RDATCMEAIACIGVNHFYNDQP 169 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~ 169 (341)
-..++...|.++ ..|+.+|..+.. .|++ ++|+..|+++++ .+|++..+|..+|.++...|++
T Consensus 39 ~~~al~~~p~~~---~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 39 YEQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCH---HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 344556677777 789999888764 5887 899999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH-hcCCHHHHHHHHH
Q psy16611 170 EVALLFYRRLLQMGLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-GISDTRLAIQCLH 247 (341)
Q Consensus 170 ~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~ 247 (341)
++|+..|+++++..|.++. +|..+|.++...|++++|+.+|+++++..|.. ..+|...+.+.. ..|++++|+..|+
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~ 193 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999887 99999999999999999999999999999988 888877776654 3799999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 248 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS---SP-YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 248 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
++++.+|+++.+|..++.++...|++++|+..|++++.. .| +...+|..++.++...|++++|...++++++..|+
T Consensus 194 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 194 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999996 44 36779999999999999999999999999999998
Q ss_pred CHH
Q psy16611 324 HSY 326 (341)
Q Consensus 324 ~~~ 326 (341)
+..
T Consensus 274 ~~~ 276 (308)
T 2ond_A 274 EYE 276 (308)
T ss_dssp TTS
T ss_pred ccc
Confidence 654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=7.7e-23 Score=170.54 Aligned_cols=203 Identities=13% Similarity=0.109 Sum_probs=156.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLAL 195 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 195 (341)
.+++.+|.++...|++++|+.+|+++++ +++..+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 82 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 6677778888888888888888888877 6677788888888887 888888888888887764 6777888888
Q ss_pred HHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 196 CCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 196 ~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
+|.. .+++++|+.+|+++++.. + ..+++.+|.+|.. .+++++|+.+|+++++.. +..++..+|.++
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK--Y--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC--C--ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 8887 888888888888887763 5 7778888888887 788888888888887765 567777888888
Q ss_pred HH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 268 AR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 268 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++++..| ..++..++.+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 77 78888888888888776 346777788888888 7888888888888877755 566666666544
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=183.24 Aligned_cols=209 Identities=17% Similarity=0.139 Sum_probs=188.1
Q ss_pred CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q psy16611 113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-- 182 (341)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 182 (341)
+++|.....+..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455555688999999999999999999999999984 5667788999999999999999999999999987
Q ss_pred ------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16611 183 ------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--------LNENAADVWYNISHVAIGISDTRLAIQCLHL 248 (341)
Q Consensus 183 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (341)
.|....++..+|.++...|++++|+.+|++++.+. |.. ..++..+|.++...|++++|+.+|++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV--AKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46667899999999999999999999999999885 444 78899999999999999999999999
Q ss_pred HHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------------------------
Q psy16611 249 ALSI--------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS---------------------------------- 286 (341)
Q Consensus 249 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------- 286 (341)
+++. .|....++..+|.++...|++++|+.+|+++++.
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9998 6666788999999999999999999999999974
Q ss_pred ---------------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 287 ---------------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 287 ---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
.|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3555668999999999999999999999999998775
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=1.6e-23 Score=176.17 Aligned_cols=210 Identities=16% Similarity=0.119 Sum_probs=186.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCC 197 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 197 (341)
...+.++.+|...|++++|+..++.. +|....++..++..+...++.++|++.+++++.. +|+++.+++.+|.++
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 35566789999999999999988662 5556778889999999999999999999999876 699999999999999
Q ss_pred HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHhCCHHH
Q psy16611 198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA--VLEAREGHIER 275 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~ 275 (341)
...|++++|+..|++ |.+ ..++..+|.++..+|++++|++.|+++++.+|++.......+ .++...|++++
T Consensus 112 ~~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ-----GDS--LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH
Confidence 999999999999998 777 999999999999999999999999999999999865444333 33334589999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
|+..|+++++..|+++.+++++|.++..+|++++|+..|++++.++|++++++..++.+....+
T Consensus 185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999887765543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=1.4e-23 Score=172.62 Aligned_cols=188 Identities=14% Similarity=0.055 Sum_probs=178.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16611 149 DATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227 (341)
Q Consensus 149 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (341)
+|.+ +.+++.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++...|.+ ..++.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~ 109 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLN 109 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHH
Confidence 4444 67899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALS--IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 305 (341)
.+|.++...|++++|+.+|+++++ ..|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999999 888899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 306 DLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 306 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
++++|+.++++++...|++..++..++.+....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 999999999999999999999888887776543
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.7e-23 Score=186.75 Aligned_cols=215 Identities=11% Similarity=0.093 Sum_probs=190.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR---------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-------- 182 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 182 (341)
..+..+|.++...|++++|++.|++++++ +|.....+.++|.+|..+|++++|+.+|++++.+
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 66778999999999999999999999876 5667888999999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHHc--CChhHHHHHHHHHHhhccccchHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 183 GLYNAELFNNLALCCFYS--QQYDMVVTCFERALSLALNENAADVWYNISHVAI---GISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
.+..+.++..+|.++... ++|++|+.+|+++++++|++ +.++..++.++. ..+++++|++.|+++++++|++.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN--PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 345678888888877765 47999999999999999999 999999988864 45788899999999999999999
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 258 LSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333 (341)
Q Consensus 258 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 333 (341)
.++..+|..+.. .|++++|+.++++++..+|.+..++.++|.+|...|++++|+..|+++++.+|++..++..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 999999877655 4678899999999999999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q psy16611 334 LEQ 336 (341)
Q Consensus 334 ~~~ 336 (341)
+..
T Consensus 290 ~y~ 292 (472)
T 4g1t_A 290 CYR 292 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 50
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.92 E-value=2.1e-24 Score=202.07 Aligned_cols=187 Identities=13% Similarity=-0.008 Sum_probs=172.9
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLIL--------KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 182 (341)
.+|+++ ..++..+ ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.
T Consensus 389 ~~p~~~---~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 462 (681)
T 2pzi_A 389 VDPTDV---AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER 462 (681)
T ss_dssp CCTTST---THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCCc---chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence 355666 3444433 78999999999999999 899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN 262 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 262 (341)
+|++..+++.+|.++...|++++|+..|+++++++|++ ..+++++|.++...|++++ +..|+++++++|++..++++
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 306 (341)
+|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999988666
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.92 E-value=7.2e-24 Score=175.64 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=172.2
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---cHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY---NAELFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 193 (341)
..++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..|++++...|+ ...+++.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 789999999999999999999999999999998 899999999999999999999999999999874 46789999
Q ss_pred HHHHHH--------cCChhHHHHHHHHHHhhcccc-chHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 194 ALCCFY--------SQQYDMVVTCFERALSLALNE-NAADVW--------------YNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 194 a~~~~~--------~~~~~~A~~~~~~al~~~~~~-~~~~~~--------------~~la~~~~~~g~~~~A~~~~~~al 250 (341)
|.++.. .|++++|+..|++++...|++ ....++ +.+|.+|...|++++|+..|++++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999 999999999999999999988 222233 889999999999999999999999
Q ss_pred hcCCC---CHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHH
Q psy16611 251 SIDSS---HGLSQNNLAVLEARE----------GHIERASTYLQAAAASSPYLYE---THYNQAVISNLAGDLQES 310 (341)
Q Consensus 251 ~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A 310 (341)
+..|+ ...+++.+|.+|..+ |++++|+..|+++++..|++.. +...++.++...++++++
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 99998 467999999999977 9999999999999999999864 566777777777776554
No 52
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.92 E-value=1.1e-23 Score=168.45 Aligned_cols=180 Identities=13% Similarity=0.159 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN----------------LALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
.+.++..|..+...|++++|+.+|++++..+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666666666 999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCchhHH
Q psy16611 217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH--IERASTYLQAAAASSPYLYETH 294 (341)
Q Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~ 294 (341)
+|++ ..+++.+|.++...|++++|+..|+++++++|+++.+++++|.+|...|+ .+.+...+++++...| ...++
T Consensus 84 ~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 84 APNN--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp CTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 9999 99999999999999999999999999999999999999999999877654 4556777777654332 23467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
+.+|.++...|++++|+.+|+++++++|++ .+...+.++..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~~ 201 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILR 201 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 888999999999999999999999999974 45555666543
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.5e-23 Score=169.38 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--c---hHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--N---AADVW 226 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~---~~~~~ 226 (341)
.++.+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++...|.. . ...++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 999999999999999999999999999999998865 1 15889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALS--------------------------IDSSHGLSQNNLAVLEAREGHIERASTYL 280 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 280 (341)
..+|.++...|++++|+..|+++++ .+|.+..++..+|.++...|++++|+..|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999 66777889999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 281 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|++..++..++.+....+
T Consensus 163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988876544
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=7.4e-23 Score=173.77 Aligned_cols=201 Identities=11% Similarity=0.007 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHc
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFY-------NDQP-------EVALLFYRRLLQ-MGLYNAELFNNLALCCFYS 200 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 200 (341)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 689999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CChhHHHHHHHHHHhhccccchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHHHH
Q psy16611 201 QQYDMVVTCFERALSLALNENAAD-VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EGHIERAST 278 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~ 278 (341)
|++++|..+|++++++.|.+ .. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .|++++|+.
T Consensus 113 ~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988 76 999999999999999999999999999999998888877766544 699999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHh
Q psy16611 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL---HPG-HSYSWDILRKLEQYF 338 (341)
Q Consensus 279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~ 338 (341)
.|+++++.+|++..+|..++.++...|++++|+..|++++.. .|+ +...|..+..+....
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999995 553 677887776665543
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.91 E-value=4.9e-23 Score=160.82 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
...+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.+ ..++..+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777788888888888877777777 7777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 312 (341)
+...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 87788888888888888877777777778888888888888888888888888877777778888888888888888888
Q ss_pred HHHHHHhcCCCCHH
Q psy16611 313 IVKKSLDLHPGHSY 326 (341)
Q Consensus 313 ~~~~al~~~p~~~~ 326 (341)
++++++++.|++..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 88888877776643
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=4.1e-22 Score=166.15 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=183.0
Q ss_pred HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16611 120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFN 191 (341)
Q Consensus 120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 191 (341)
.+++.+|.++.. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 114 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA 114 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence 678999999999 999999999999999885 89999999999999 999999999999999974 889999
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 192 NLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 192 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
.+|.+|.. .+++++|+.+|+++++.. + ..+++++|.++.. .+++++|+.+|+++++. .++.+++.+
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 188 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNA 188 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 99999999 999999999999999875 5 7899999999998 99999999999999987 468899999
Q ss_pred HHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 264 AVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYS 327 (341)
Q Consensus 264 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 327 (341)
|.+|.. .+++++|+.+|+++++..+ ..++..+|.+|.. .+++++|+.+|++++++.|++...
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999 9999999999999999866 7899999999999 999999999999999999875443
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.3e-23 Score=195.08 Aligned_cols=183 Identities=10% Similarity=-0.071 Sum_probs=174.3
Q ss_pred HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc
Q psy16611 147 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL--------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218 (341)
Q Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 218 (341)
..+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35678888887777 78899999999999999 89999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
++ ..+|+++|.++...|++++|+..|+++++++|++..+++++|.++...|++++ +..|+++++++|++..+++++|
T Consensus 465 ~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 465 WR--WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 299 VISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999998887764
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.91 E-value=5.1e-24 Score=161.13 Aligned_cols=141 Identities=10% Similarity=0.091 Sum_probs=80.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16611 193 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 272 (341)
||.++...|++++|+..+++++...|+. ...++.+|.+|+..|++++|+.+|+++++++|+++.+|+.+|.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK--SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH--HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 4555555555666666666665555555 55555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHH
Q psy16611 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI-VKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~ 335 (341)
+++|+..|+++++++|+++.+++++|.+|...|++++|... ++++++++|+++.++..++++.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666655544433 3556666666655555555443
No 59
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.90 E-value=4.9e-23 Score=173.48 Aligned_cols=213 Identities=9% Similarity=-0.009 Sum_probs=175.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------H
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------A 187 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~ 187 (341)
..+...|.+|...|++++|+..|++++...+. ...++.++|.+|...|++++|+.+|++++.+.+.. .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555678899999999999999999987532 25789999999999999999999999999987643 5
Q ss_pred HHHHHHHHHHHHc-CChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----
Q psy16611 188 ELFNNLALCCFYS-QQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL---- 258 (341)
Q Consensus 188 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 258 (341)
.++.++|.+|... |++++|+.+|++++++.|.. ....++.++|.++..+|++++|+.+|+++++..|++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 6899999999996 99999999999999998754 12467899999999999999999999999999887643
Q ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 259 ---SQNNLAVLEAREGHIERASTYLQAAAASSPYLYET-----HYNQAVISN--LAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 259 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
++.++|.++..+|++++|+.+|+++++++|+.... +..++..+. ..+++++|+..|++++.++|.+...+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 67899999999999999999999999999986653 445566654 45789999999999999988776555
Q ss_pred HHHH
Q psy16611 329 DILR 332 (341)
Q Consensus 329 ~~l~ 332 (341)
..+.
T Consensus 278 ~~~k 281 (292)
T 1qqe_A 278 NKIK 281 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 60
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.90 E-value=1.8e-22 Score=157.65 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=166.1
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 36688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
..|++++|+.++++++...|.+ ..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchh
Q psy16611 279 YLQAAAASSPYLYE 292 (341)
Q Consensus 279 ~~~~al~~~p~~~~ 292 (341)
+++++++..|++..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999999887654
No 61
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.90 E-value=9.5e-24 Score=159.62 Aligned_cols=147 Identities=10% Similarity=0.049 Sum_probs=137.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS 237 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 237 (341)
.||.++...|++++|+..+++++...|+++..++.+|.+|+..|++++|+.+|+++++++|++ +.+|+.+|.++...|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC
Confidence 478899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16611 238 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY-LQAAAASSPYLYETHYNQAVISNLAGD 306 (341)
Q Consensus 238 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~g~ 306 (341)
++++|+..|+++++++|+++.+++++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 599999999999999999999988875
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=4.3e-23 Score=182.12 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=113.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCcHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQM------GLYNAEL 189 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 189 (341)
..++.+|..+...|++++|+.+|+++++..|++. .++..+|.+|...|++++|+.+|++++.. .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666666666666666666666665554 34556666666666666666666666554 3444555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhh------ccccchHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISD-----------------TRLAIQCL 246 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~ 246 (341)
+..+|.+|...|++++|+.+|++++.+ .+.. ..++..+|.++...|+ +++|+.++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE--GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH--HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 666666666666666666666666555 2222 4555566666666666 56666666
Q ss_pred HHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHcCCHHHHHHHH
Q psy16611 247 HLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE------THYNQAVISNLAGDLQESYNIV 314 (341)
Q Consensus 247 ~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~ 314 (341)
++++++. +....++..+|.++...|++++|+.+|++++++.+.... ++..+|.+|...|++++|+.+|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5555442 122335555566666666666666666666555443322 5555566666666666666666
Q ss_pred HHHHhcCC
Q psy16611 315 KKSLDLHP 322 (341)
Q Consensus 315 ~~al~~~p 322 (341)
++++.+.+
T Consensus 287 ~~al~~~~ 294 (411)
T 4a1s_A 287 KRTLALAV 294 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 63
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=8.4e-22 Score=177.04 Aligned_cols=210 Identities=15% Similarity=0.028 Sum_probs=165.8
Q ss_pred CCchhHhhhcHHHHHHH--cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCcHHH
Q psy16611 115 GPFIQVSRLNLAKIFEG--LNNMPMSVKYYKLILKRDATCMEAIACIGVNHF---YNDQPEVALLFYRRLLQMGLYNAEL 189 (341)
Q Consensus 115 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~ 189 (341)
++.....+.++|..+.. .+++++|+.+|+++++.+|++++++..++.++. ..++.++|++.|+++++++|++..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 33334566666665554 457889999999999999999999888888755 4567788899999999999998888
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 190 FNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 190 ~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
+..+|..+.. .+++++|+.++++++..+|.. ..++.++|.+|...|++++|+..|+++++.+|++..++..+|.
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8888876654 467788899999999888888 8888899999999999999999999999999988888888888
Q ss_pred HHHHh-------------------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 266 LEARE-------------------GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 266 ~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
+|... +.+++|+..|+++++++|.+..++..+|.++...|++++|+.+|++++.+.|++..
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 77543 34667888888888888888888888888888888888888888888888776654
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=1.9e-22 Score=167.96 Aligned_cols=205 Identities=14% Similarity=-0.031 Sum_probs=183.2
Q ss_pred HHcCCchHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16611 130 EGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 205 (341)
Q Consensus 130 ~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 205 (341)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34688999999999999973 45678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
|+.+|++++..+|.+ ..++..+|.++...|++++|+..|+++++.+|++......++.. ...|++++|+..+++++.
T Consensus 96 A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccc--cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999999999998766666544 677999999999999999
Q ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHh
Q psy16611 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH----SYSWDILRKLEQYF 338 (341)
Q Consensus 286 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~ 338 (341)
..|.+...+ .++.++...++.++|+..+++++...|.. ..++..++.+....
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 999876665 47888888999999999999999887753 56777777766544
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=1e-22 Score=162.75 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=154.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcC
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIAC----------------IGVNHFYNDQPEVALLFYRRLLQMG 183 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~ 183 (341)
..++..|..+...|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+..|+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 556778999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD--TRLAIQCLHLALSIDSSHGLSQN 261 (341)
Q Consensus 184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~ 261 (341)
|++..+++.+|.++...|++++|+.+|+++++++|++ ..+++++|.+|...|+ ...+...+++++...|. ..+++
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 9999999999999999999999999999999999999 9999999999987654 45677788887654332 34678
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 89999999999999999999999999974 333344443
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.8e-22 Score=177.36 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=103.8
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HH
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AE 188 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 188 (341)
.+..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...+.. ..
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 4445555555555555555555555443 12223445555555555555555555555555443322 23
Q ss_pred HHHHHHHHHHHcCC--------------------hhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHH
Q psy16611 189 LFNNLALCCFYSQQ--------------------YDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQ 244 (341)
Q Consensus 189 ~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~ 244 (341)
++..+|.++...|+ +++|+.++++++.+.... ....++..+|.++...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45555555555555 555555555555442111 113445555555555555555555
Q ss_pred HHHHHHhcCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHH
Q psy16611 245 CLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 245 ~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 312 (341)
++++++++.+... .++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 5555555433221 245555555555555555555555555544332 3345555555555555555555
Q ss_pred HHHHHHhcCCCC
Q psy16611 313 IVKKSLDLHPGH 324 (341)
Q Consensus 313 ~~~~al~~~p~~ 324 (341)
+|++++.+.+..
T Consensus 289 ~~~~a~~~~~~~ 300 (406)
T 3sf4_A 289 YHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 555555555555
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.90 E-value=2.7e-22 Score=167.35 Aligned_cols=190 Identities=17% Similarity=0.143 Sum_probs=161.0
Q ss_pred HHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCcHHHHHHH
Q psy16611 130 EGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFNNL 193 (341)
Q Consensus 130 ~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 193 (341)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3477888888888888773 2556778889999999999999999999999876 35667788999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCH
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSL--------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSHG 257 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 257 (341)
|.++...|++++|+.+|++++.. +|.. ..++.++|.++...|++++|+.+|+++++. .|...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999988 3555 788999999999999999999999999988 66667
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------------------------------------C
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASS-------------------------------------------------P 288 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------------p 288 (341)
.++..+|.++...|++++|+.+|++++++. |
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 888999999999999999999999998752 3
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 344588899999999999999999999999763
No 68
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.89 E-value=1.8e-21 Score=157.49 Aligned_cols=189 Identities=7% Similarity=-0.052 Sum_probs=141.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH---HHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l 193 (341)
..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 567788888888888888888888888888765 467888888888888888888888888888887754 77888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH--------------
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS-------------- 259 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------- 259 (341)
|.++...+.. . ...+..++.++...|++++|+..|+++++..|++..+
T Consensus 85 g~~~~~~~~~----------------~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDDS----------------A--LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh----------------h--hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 8888764310 1 1222233333444455555555555555555554432
Q ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 260 ---QNNLAVLEAREGHIERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 260 ---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
...+|.+|...|++++|+..|+++++..|+++ .++..+|.++.++|++++|+..++++....|++.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 25789999999999999999999999999876 57999999999999999999999999999888754
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=9.6e-23 Score=179.85 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=175.1
Q ss_pred cCCCCCc-hhHhhhcHHHHHHHcCCchHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q psy16611 111 SQPDGPF-IQVSRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM- 182 (341)
Q Consensus 111 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 182 (341)
..|+++. ....+..+|.++...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.+|++++..
T Consensus 77 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445442 2246778888999999999999999988877 4556778888999999999999999999988887
Q ss_pred -----CCCcHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhc
Q psy16611 183 -----GLYNAELFNNLALCCFYSQQ-----------------YDMVVTCFERALSLALNE----NAADVWYNISHVAIGI 236 (341)
Q Consensus 183 -----~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~ 236 (341)
.+....++..+|.++...|+ +++|+.++++++.+.+.. ....++..+|.++...
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 45566788888999998888 888888888888764221 2256888888889889
Q ss_pred CCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHc
Q psy16611 237 SDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLA 304 (341)
Q Consensus 237 g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~ 304 (341)
|++++|+.+|++++++.+... .++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 999999999988888765433 378888888888899999999888888876643 45778888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q psy16611 305 GDLQESYNIVKKSLDLHPGH------SYSWDILRKLEQY 337 (341)
Q Consensus 305 g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 337 (341)
|++++|+.+|++++.+.++. ..++..++.+...
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 89888888888888775433 2355555555443
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=4.5e-22 Score=170.00 Aligned_cols=216 Identities=16% Similarity=0.113 Sum_probs=126.5
Q ss_pred cccCCCCCch-hHhhhcHHHHHHHcCCchHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy16611 109 MLSQPDGPFI-QVSRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181 (341)
Q Consensus 109 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 181 (341)
+...|.++.. ...+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.
T Consensus 32 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 32 VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344444321 244556666666666666666666666554 223345566666666666666666666666665
Q ss_pred cCCCc------HHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHhhcccc----chHHHHHHHHH
Q psy16611 182 MGLYN------AELFNNLALCCFYSQQ--------------------YDMVVTCFERALSLALNE----NAADVWYNISH 231 (341)
Q Consensus 182 ~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~----~~~~~~~~la~ 231 (341)
..+.. ..++..+|.++...|+ +++|+.++++++.+.+.. ....++..+|.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 191 (338)
T 3ro2_A 112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN 191 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 53322 2356666666666666 666666666665542111 11445666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAV 299 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~ 299 (341)
++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 271 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 6666666666666666666554322 2256666666666666666666666666654433 345566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 300 ISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
++...|++++|+.++++++.+.+..
T Consensus 272 ~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 6666666666666666666666655
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.9e-22 Score=176.13 Aligned_cols=265 Identities=15% Similarity=0.110 Sum_probs=210.9
Q ss_pred CCCchHhhhcccccccccCCccch--hHhhhhhhhhh-------------------cccCCCCCchhHhhhcHHHHHHHc
Q psy16611 74 RGGTLEQSLKTPRTAKSARPLTSQ--AARTIRLGTAS-------------------MLSQPDGPFIQVSRLNLAKIFEGL 132 (341)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~~~~~ 132 (341)
..|.+++|+..++.+....|.... ......+|... .....+.+.....+..+|.++...
T Consensus 21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 566778888877665554444321 11122223211 112233444457788999999999
Q ss_pred CCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----
Q psy16611 133 NNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEVALLFYRRLLQM---- 182 (341)
Q Consensus 133 g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~---- 182 (341)
|++++|+.++++++...+.. ..++..+|.+|...|+ +++|+.+|++++..
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999876542 5588999999999999 99999999999876
Q ss_pred --CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16611 183 --GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256 (341)
Q Consensus 183 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 256 (341)
.+....++..+|.++...|++++|+.++++++.+.+.. ....++..+|.++...|++++|+.+|++++.+.+..
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 34456789999999999999999999999999997665 224489999999999999999999999999887655
Q ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 257 ------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 257 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++.+..
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999886543 4588899999999999999999999999999888
Q ss_pred H------HHHHHHHHHHHHh
Q psy16611 325 S------YSWDILRKLEQYF 338 (341)
Q Consensus 325 ~------~~~~~l~~~~~~~ 338 (341)
. .++..++.+...+
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 341 GDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHh
Confidence 3 3455555555443
No 72
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.89 E-value=4.3e-21 Score=160.61 Aligned_cols=229 Identities=10% Similarity=0.020 Sum_probs=209.8
Q ss_pred hhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcC--CchHHHHHHHHHHHhCCCCHHHHHHHHHHH----Hhc---CChH
Q psy16611 100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLN--NMPMSVKYYKLILKRDATCMEAIACIGVNH----FYN---DQPE 170 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~----~~~---~~~~ 170 (341)
+.+.+-...+..+|++. .+|...+.++...| ++++++..+..++..+|++..+|+..+.++ ... ++++
T Consensus 51 ~aL~~t~~~L~~nP~~~---taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 51 RALHITELGINELASHY---TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHCTTCH---HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHCcHHH---HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45566667788889888 88999999999999 999999999999999999999999999999 666 7899
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh--HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC------HHHH
Q psy16611 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD--MVVTCFERALSLALNENAADVWYNISHVAIGISD------TRLA 242 (341)
Q Consensus 171 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~------~~~A 242 (341)
+++.++.++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+ ..+|...+.++...++ ++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccchhhhHHHH
Confidence 9999999999999999999999999999999999 9999999999999999 9999999999999988 9999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIER-ASTYLQAAAASS---PYLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
++++++++..+|.+..+|+.++.++...|+..+ ...++.+++.+. +.++.++..++.++.+.|+.++|+++|+++.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998555 555777777665 7788999999999999999999999999999
Q ss_pred h-cCCCCHHHHHHHHH
Q psy16611 319 D-LHPGHSYSWDILRK 333 (341)
Q Consensus 319 ~-~~p~~~~~~~~l~~ 333 (341)
+ .+|.....|.....
T Consensus 286 ~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 286 SKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HTTCGGGHHHHHHHHH
T ss_pred hccChHHHHHHHHHHh
Confidence 6 89999999877654
No 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=2.2e-21 Score=163.41 Aligned_cols=181 Identities=13% Similarity=0.047 Sum_probs=154.2
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCChhHHH
Q psy16611 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~ 207 (341)
++++|+..|+++ |.+|...|++++|+.+|++++.+.+. ...++.++|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56788999999999999999987432 2678999999999999999999
Q ss_pred HHHHHHHhhcccc----chHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHH
Q psy16611 208 TCFERALSLALNE----NAADVWYNISHVAIGI-SDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 208 ~~~~~al~~~~~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A 276 (341)
.+|++++.+.+.. ....++.++|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999998754 1256899999999996 99999999999999998754 56789999999999999999
Q ss_pred HHHHHHHHHhCCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 277 STYLQAAAASSPYLYE-------THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
+.+|++++++.|++.. ++.++|.++..+|++++|+.+|++++.++|++....
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 9999999999987654 578999999999999999999999999999876643
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=3.9e-22 Score=170.39 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=137.5
Q ss_pred hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------hHH
Q psy16611 118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEV 171 (341)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~--------------------~~~ 171 (341)
....+..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 34556667777777777777777777777654432 3366677777777777 777
Q ss_pred HHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHH
Q psy16611 172 ALLFYRRLLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRL 241 (341)
Q Consensus 172 A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~ 241 (341)
|+.++++++.. .+....++..+|.++...|++++|+.++++++...+.. ....++..+|.++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776654 22334567777777777777777777777777765443 123367777777777777777
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHH
Q psy16611 242 AIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQE 309 (341)
Q Consensus 242 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~ 309 (341)
|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 777777777665443 5566777777777777777777777777664432 2366677777777777777
Q ss_pred HHHHHHHHHhcCCCC
Q psy16611 310 SYNIVKKSLDLHPGH 324 (341)
Q Consensus 310 A~~~~~~al~~~p~~ 324 (341)
|..+|++++++.+..
T Consensus 322 A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 322 AMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777776543
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=1.3e-21 Score=171.17 Aligned_cols=166 Identities=17% Similarity=0.133 Sum_probs=144.5
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CcHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKR---DAT---CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-------YNAE 188 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~ 188 (341)
++..|..+...|++++|+.+|++++.. .++ ...+++.+|.+|...|++++|+.++++++.+.+ ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344889999999999999999999986 222 467899999999999999999999999998743 3356
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CCCHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALS-----ID-SSHGL 258 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~ 258 (341)
++..+|.+|...|++++|+.+|++++.+.+.. ....++.++|.+|...|++++|+.+|+++++ .+ |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 89999999999999999999999999886544 2246899999999999999999999999998 45 77788
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
++.++|.++...|++++|+.++++++++.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998863
No 76
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=3.2e-21 Score=141.00 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=89.6
Q ss_pred HHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 213 ALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 213 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
+..++|+. ...+.++|..++..|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus 5 ~a~inP~~--a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 5 LAYINPEL--AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp --CCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 34456666 7777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
+|+++|.++..+|++++|+..|+++++++|++.+++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777777777777777666654
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.87 E-value=7e-21 Score=154.04 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=128.2
Q ss_pred hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhc-----------------
Q psy16611 107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCME---AIACIGVNHFYN----------------- 166 (341)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~----------------- 166 (341)
..+...|.+++...+++.+|.++...|++++|+..|+++++.+|++.. +++.+|.++...
T Consensus 29 ~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 108 (225)
T 2yhc_A 29 ALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRD 108 (225)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------C
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence 345667888877789999999999999999999999999999998764 789999999864
Q ss_pred -CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16611 167 -DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245 (341)
Q Consensus 167 -~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (341)
|++++|+..|+++++..|++..++..+..+.. +.... ......+|.+|...|++++|+..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~-----------------~~~~~--~~~~~~~a~~~~~~~~~~~A~~~ 169 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF-----------------LKDRL--AKYEYSVAEYYTERGAWVAVVNR 169 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-----------------HHHHH--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH-----------------HHHHH--HHHHHHHHHHHHHcCcHHHHHHH
Confidence 45555555555555555555433221111000 00011 23346789999999999999999
Q ss_pred HHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16611 246 LHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 292 (341)
Q Consensus 246 ~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 292 (341)
|+++++..|+++ .++..+|.++.++|++++|+..++++....|++..
T Consensus 170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 999999999886 67999999999999999999999999998887654
No 78
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.87 E-value=9.2e-21 Score=159.07 Aligned_cols=170 Identities=13% Similarity=-0.038 Sum_probs=161.9
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16611 148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227 (341)
Q Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (341)
..|.+.+.++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+. ...+.
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~ 189 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT--RYQGL 189 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--HHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--HHHHH
Confidence 3588899999999999999999999999999999999999999999999999999999999999999999977 77778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcC
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAG 305 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g 305 (341)
..+..+...++.++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++.+|++ ..++.+++.++...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 888888899999999999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred CHHHHHHHHHHHHh
Q psy16611 306 DLQESYNIVKKSLD 319 (341)
Q Consensus 306 ~~~~A~~~~~~al~ 319 (341)
+.++|...|++++.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999875
No 79
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.87 E-value=9e-22 Score=153.00 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q psy16611 155 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 234 (341)
Q Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 234 (341)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| + +..+..++.+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555555 4 333333332221
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHHHHH
Q psy16611 235 -GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAGDLQESY 311 (341)
Q Consensus 235 -~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 311 (341)
..++..+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++.+++.++...|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 11222335555666666666666666666666666666666666666666665543 335556666666666666666
Q ss_pred HHHHHHH
Q psy16611 312 NIVKKSL 318 (341)
Q Consensus 312 ~~~~~al 318 (341)
..|++++
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 80
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=3.7e-21 Score=140.70 Aligned_cols=121 Identities=13% Similarity=0.019 Sum_probs=94.6
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 179 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL 258 (341)
Q Consensus 179 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 258 (341)
+..++|+.+..+.++|..++..|+|++|+.+|+++++++|.+ ..+|+++|.++..+|++++|+..|+++++++|++..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 345677777777788888888888888888888888888877 778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
+|+++|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8888888888888888888888888888888877777777653
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=2.4e-21 Score=169.50 Aligned_cols=206 Identities=13% Similarity=0.110 Sum_probs=175.3
Q ss_pred CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q psy16611 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 186 (341)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 186 (341)
+++.....+..+|.++...|++++|+.+++++++..+. ...++..+|.+|...|++++|+.+|++++...+..
T Consensus 138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 33444578999999999999999999999999987443 34578999999999999999999999999875433
Q ss_pred ------HHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----c-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q psy16611 187 ------AELFNNLALCCFYSQQYDMVVTCFERALSL-----A-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID- 253 (341)
Q Consensus 187 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 253 (341)
..++.++|.+|...|++++|+.+|++++.+ + |.. ..++.++|.++...|++++|+.++++++++.
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL--PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999994 4 555 8899999999999999999999999999874
Q ss_pred ----CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 254 ----SSHGLSQNNLAVLEAREGH---IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 254 ----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
+.....+..+|.++...|+ +++|+..+++. ...+....++..+|.+|...|++++|..+|++++.+..
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 296 KAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3333446779999999999 88888888776 33334455888999999999999999999999998754
No 82
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.86 E-value=9.8e-21 Score=174.20 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=135.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16611 132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 211 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 211 (341)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCC
Q psy16611 212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHIERASTYLQAAAASSP 288 (341)
Q Consensus 212 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p 288 (341)
++++.+|++ ..+++++|.++...|++++|++.|+++++.+|++..++.++|.++... |++++|+..|+++++.+|
T Consensus 82 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDAAPEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 999999998 999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CchhHHHHHH
Q psy16611 289 YLYETHYNQA 298 (341)
Q Consensus 289 ~~~~~~~~l~ 298 (341)
.+...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8888877766
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=1.9e-20 Score=163.57 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=166.2
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------cH
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDA------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NA 187 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 187 (341)
.++..|..+...|++++|+..|++++...+ ....+++.+|.+|...|++++|+.++++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 466788999999999999999999997632 24678899999999999999999999999986432 35
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALS-----IDSSHGL 258 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 258 (341)
.++..+|.++...|++++|+.+|++++.+.+.. ....++.++|.+|...|++++|+.+|+++++ .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 678899999999999999999999999975422 2367899999999999999999999999999 7788888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----ch------------------------------------hHHHHH
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPY-----LY------------------------------------ETHYNQ 297 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~------------------------------------~~~~~l 297 (341)
++..+|.++...|++++|+.++++++++.+. .. ..+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999999999999987432 11 134456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 298 AVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
|.+|...|++++|..+|+++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777777654
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.86 E-value=4.6e-21 Score=148.99 Aligned_cols=163 Identities=7% Similarity=-0.032 Sum_probs=149.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF- 198 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 198 (341)
...+.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++.+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 276 (341)
..++..+|+..++++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++...|++++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDN--FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 3345567899999999999999 9999999999999999999999999999999875 66999999999999999999
Q ss_pred HHHHHHHHH
Q psy16611 277 STYLQAAAA 285 (341)
Q Consensus 277 ~~~~~~al~ 285 (341)
+..|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.86 E-value=1.3e-20 Score=173.40 Aligned_cols=163 Identities=13% Similarity=-0.025 Sum_probs=137.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16611 166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (341)
.|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++++|++ ..++.++|.++...|++++|+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCC
Q psy16611 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA---GDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p 322 (341)
|+++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++.+++.++..+ |++++|...|+++++.+|
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCHHHHHH
Q psy16611 323 GHSYSWDI 330 (341)
Q Consensus 323 ~~~~~~~~ 330 (341)
++...+..
T Consensus 160 ~~~~~~~~ 167 (568)
T 2vsy_A 160 GAVEPFAF 167 (568)
T ss_dssp CCSCHHHH
T ss_pred cccChHHH
Confidence 87665543
No 86
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=5e-20 Score=168.09 Aligned_cols=214 Identities=12% Similarity=0.038 Sum_probs=190.9
Q ss_pred hhhcccCCCCCchhHhhhcHHHHHHH-------cCCch-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCChH
Q psy16611 106 TASMLSQPDGPFIQVSRLNLAKIFEG-------LNNMP-------MSVKYYKLILK-RDATCMEAIACIGVNHFYNDQPE 170 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~ 170 (341)
..++...|.++ ..|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..++.++...|+++
T Consensus 262 ~~al~~~p~~~---~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 262 EQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCCH---HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 34455667776 789999988886 79987 89999999997 79999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q psy16611 171 VALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIGISDTRLAIQCLHL 248 (341)
Q Consensus 171 ~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 248 (341)
+|...|+++++..|.++ .+|..++.++...|++++|+.+|+++++..|.. ...+...+.+ +...|++++|...|++
T Consensus 339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 99999999999999885 699999999999999999999999999998877 6666666655 3468999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 249 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 249 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+++.+|+++.+|..++.++...|++++|...|++++...|.++. +|...+......|+.+.+..+++++++..|++
T Consensus 417 al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 417 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 99999999999999999999999999999999999998776654 88888889999999999999999999999853
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.86 E-value=4.6e-21 Score=144.23 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
+-..+++++.++|++ ..+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++...|++++|+..|+++++
T Consensus 21 ~~~~l~~al~l~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 21 SGATLKDINAIPDDM--MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp TSCCTGGGCCSCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 334567778888888 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 286 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999998875
No 88
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=2e-19 Score=150.60 Aligned_cols=208 Identities=12% Similarity=-0.003 Sum_probs=191.1
Q ss_pred HHHHHcCCc-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HH
Q psy16611 127 KIFEGLNNM-PMSVKYYKLILKRDATCMEAIACIGVNHFYND--QPEVALLFYRRLLQMGLYNAELFNNLALCC----FY 199 (341)
Q Consensus 127 ~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~ 199 (341)
......|.+ ++|+..+.++|..+|++..+|+..+.++...+ ++++++.++.+++..+|++..+|+..+.++ ..
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 344556666 58999999999999999999999999999999 999999999999999999999999999999 66
Q ss_pred c---CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--
Q psy16611 200 S---QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR--LAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-- 272 (341)
Q Consensus 200 ~---~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-- 272 (341)
. +++++++.++.++++.+|.+ ..+|...+.++...|.++ +++++++++++.+|.+..+|+..+.+....++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkn--y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKN--HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 6 78999999999999999999 999999999999999999 99999999999999999999999999999888
Q ss_pred ----HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q psy16611 273 ----IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE-SYNIVKKSLDLH---PGHSYSWDILRKLEQ 336 (341)
Q Consensus 273 ----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~ 336 (341)
++++++++++++..+|.+..+|+.++.++...|+..+ ...++++++.+. |.++.++..++.+..
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998655 555777777776 888888888887764
No 89
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.2e-19 Score=165.53 Aligned_cols=200 Identities=11% Similarity=-0.035 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHc
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFY-------NDQPE-------VALLFYRRLLQ-MGLYNAELFNNLALCCFYS 200 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 200 (341)
.+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 378899999999999999999999999986 79987 99999999997 8999999999999999999
Q ss_pred CChhHHHHHHHHHHhhccccchH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCHHHHHH
Q psy16611 201 QQYDMVVTCFERALSLALNENAA-DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERAST 278 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~ 278 (341)
|++++|..+|+++++..|.+ . .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++++|..
T Consensus 335 g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 99999999999999999987 5 5899999999999999999999999999999888877776666 346899999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHH
Q psy16611 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY----SWDILRKLEQY 337 (341)
Q Consensus 279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~ 337 (341)
.|+++++..|+++.+|..++.++...|+.++|..+|++++...|.++. .|.....+...
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876654 66555555443
No 90
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5e-21 Score=156.65 Aligned_cols=208 Identities=14% Similarity=0.038 Sum_probs=182.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCcH-----
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACI-------GVNHFYNDQPEVALLFYRRLLQMGLYNA----- 187 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~p~~~----- 187 (341)
...+..|.-+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3455556655 68999999999999999999999999999 8999999999999999999999877543
Q ss_pred ----------------HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 188 ----------------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 188 ----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
+++..++.++...|+|++|.+.|..++...|.+ . .++.+|.++++.++|++|+..|+++..
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~--~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH--L-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH--H-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch--H-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 344558899999999999999999999999988 7 999999999999999999999998877
Q ss_pred cCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 252 IDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAASS--PY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 252 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
..+.. ..+++.+|.++..+|++++|+.+|++++.-. |. ..++++++|.++.++|+.++|...|++++..+|+ ..
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 54221 4589999999999999999999999998644 54 5679999999999999999999999999999999 88
Q ss_pred HHHHHH
Q psy16611 327 SWDILR 332 (341)
Q Consensus 327 ~~~~l~ 332 (341)
++..|.
T Consensus 243 ~~~aL~ 248 (282)
T 4f3v_A 243 VAAALK 248 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777664
No 91
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.85 E-value=1.7e-19 Score=144.37 Aligned_cols=188 Identities=12% Similarity=0.038 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----ChhHHHHHHH
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ----QYDMVVTCFE 211 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~ 211 (341)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578899999876 68999999999999999999999999999875 588999999999998 7 9999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHH
Q psy16611 212 RALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDS--SHGLSQNNLAVLEAR----EGHIERASTYLQ 281 (341)
Q Consensus 212 ~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 281 (341)
++.+ +.+ +.+++++|.+|.. .+++++|+.+|+++++..+ .++.+++++|.+|.. .+++++|+.+|+
T Consensus 78 ~A~~--~g~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVE--AGS--KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHH--TTC--HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHH--CCC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9965 467 8999999999998 8999999999999999988 358999999999999 899999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 282 AAAASSPYLYETHYNQAVISNLA-G-----DLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 282 ~al~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
++++. +.++.++++||.+|... | ++++|+.+|+++.+.. +..+...+..+.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~ 210 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS 210 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence 99998 66788999999999875 3 8999999999999884 566777776654
No 92
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.85 E-value=1.6e-20 Score=141.43 Aligned_cols=131 Identities=9% Similarity=-0.002 Sum_probs=102.8
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
...|++++.++|.+ ...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.+
T Consensus 7 ~~~~~~al~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDT--LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34577777777777 7788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 287 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
+|+++.+++++|.+|..+|++++|+.+|++++++.|+++........+...+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 88888888888888888888888888888888888877766666666555544
No 93
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.6e-20 Score=156.75 Aligned_cols=170 Identities=21% Similarity=0.169 Sum_probs=155.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc---
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--- 217 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 217 (341)
+|....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999984 67778899999999999999999999999999883
Q ss_pred -----cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 218 -----LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--------SSHGLSQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 218 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
+.. ..++..+|.++...|++++|+.+|+++++.. |....++..+|.++...|++++|+.+|++++
T Consensus 103 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 103 LGKDHPAV--AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hCCCChHH--HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444 8899999999999999999999999999874 5567789999999999999999999999999
Q ss_pred Hh--------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 285 AS--------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 285 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
.+ .|....++..+|.++...|++++|+.+|+++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 6666778999999999999999999999999975
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.85 E-value=4e-20 Score=155.15 Aligned_cols=164 Identities=8% Similarity=-0.061 Sum_probs=158.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|+....+...+..+..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 77889999999999999999999999999999999999999999999999999999999999999888778888888999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 277 (341)
.++.++|+..|++++..+|++ ..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|+
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 999999999999999999999 9999999999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHHH
Q psy16611 278 TYLQAAAA 285 (341)
Q Consensus 278 ~~~~~al~ 285 (341)
..|++++.
T Consensus 276 ~~~r~al~ 283 (287)
T 3qou_A 276 SXYRRQLY 283 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.85 E-value=8.5e-19 Score=147.50 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=176.8
Q ss_pred HHHHcCCch-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16611 128 IFEGLNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYNDQ----------PEVALLFYRRLLQMGLYNAELFNNLALC 196 (341)
Q Consensus 128 ~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 196 (341)
.....|++. +|+..+.+++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|+..+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334677777 68999999999999999999999998887765 6889999999999999999999999999
Q ss_pred HHHcCC--hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---
Q psy16611 197 CFYSQQ--YDMVVTCFERALSLALNENAADVWYNISHVAIGISD-TRLAIQCLHLALSIDSSHGLSQNNLAVLEARE--- 270 (341)
Q Consensus 197 ~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--- 270 (341)
+...++ +++++.++.++++.+|.+ ..+|...+.+....|. ++++++++.++++.+|.+..+|+.++.++...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprN--y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 999884 899999999999999999 9999999999999998 69999999999999999999999999998887
Q ss_pred -----------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 271 -----------GHIERASTYLQAAAASSPYLYETHYNQAVISNLA-----------GDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 271 -----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.+++++++.|++.-..
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5688999999999999999999998776666655 468899999999999999985444
Q ss_pred HHHH
Q psy16611 329 DILR 332 (341)
Q Consensus 329 ~~l~ 332 (341)
..+.
T Consensus 276 ~~~~ 279 (331)
T 3dss_A 276 LTII 279 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.84 E-value=3.9e-20 Score=156.87 Aligned_cols=193 Identities=17% Similarity=0.062 Sum_probs=150.0
Q ss_pred cCCchHHHHHHHHHHHhCCC-------C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HHHHHHHH
Q psy16611 132 LNNMPMSVKYYKLILKRDAT-------C----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLA 194 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~~~-------~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 194 (341)
.|++++|.++++++.+..+. + ...+...|.+|...|++++|+.+|.+++.+.+.. ..++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666655543221 1 1234455778888999999999999998875432 45788999
Q ss_pred HHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q psy16611 195 LCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLA 264 (341)
Q Consensus 195 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~ 264 (341)
.+|...|++++|+.+|++++.+.+.. ....++.++|.+|.. |++++|+.+|++++++.+.. ..++.++|
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999886432 225678899999988 99999999999999887543 56788999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLY------ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.++..+|++++|+.+|++++.+.+.+. .++..++.++..+|++++|+.+|++++ ++|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 999999999999999999998765432 367788889999999999999999999 8887643
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.84 E-value=1.7e-20 Score=141.11 Aligned_cols=116 Identities=7% Similarity=-0.052 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 174 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 174 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
..+++++.++|++..+++.+|.+++..|++++|+.+|++++.++|.+ +.+|+++|.++...|++++|+..|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 45667777888888888888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888888888888888654
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.83 E-value=8e-22 Score=169.22 Aligned_cols=154 Identities=13% Similarity=0.072 Sum_probs=105.6
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc-------------hHHHHHHHHHH
Q psy16611 166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-------------AADVWYNISHV 232 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~la~~ 232 (341)
++++++|+..|++++...|....++..+|.+++..|++++|+.+|++++.+.|.+. ...+++++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555566666666666666666666666665555540 03677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH-H
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES-Y 311 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~ 311 (341)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777777777 4
Q ss_pred HHHHHHHh
Q psy16611 312 NIVKKSLD 319 (341)
Q Consensus 312 ~~~~~al~ 319 (341)
..|++++.
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666554
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.83 E-value=1.9e-19 Score=150.00 Aligned_cols=171 Identities=20% Similarity=0.169 Sum_probs=153.7
Q ss_pred CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q psy16611 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--- 182 (341)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 182 (341)
+++.....+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33445588999999999999999999999999987 3556778999999999999999999999999987
Q ss_pred -----CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 183 -----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL--------ALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 183 -----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (341)
+|....++..+|.++...|++++|+.+|++++.. .|.. ..++..+|.++...|++++|+.+|+++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--AKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677889999999999999999999999999998 6666 889999999999999999999999999
Q ss_pred HhcC-------------------------------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16611 250 LSID-------------------------------------------------SSHGLSQNNLAVLEAREGHIERASTYL 280 (341)
Q Consensus 250 l~~~-------------------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 280 (341)
++.. |....++..+|.+|...|++++|+.+|
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9762 344568899999999999999999999
Q ss_pred HHHHHh
Q psy16611 281 QAAAAS 286 (341)
Q Consensus 281 ~~al~~ 286 (341)
++++++
T Consensus 276 ~~al~~ 281 (283)
T 3edt_B 276 DCASRN 281 (283)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 999875
No 100
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.82 E-value=1.3e-19 Score=135.54 Aligned_cols=130 Identities=11% Similarity=-0.007 Sum_probs=97.8
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
..|++++..+|.+ ...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++
T Consensus 5 ~~l~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDT--LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566677777777 77777888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
|+++.+++++|.++..+|++++|+.+|++++.+.|+++.......++...+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 8888888888888888888888888888888887777766666655555443
No 101
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=8e-18 Score=141.56 Aligned_cols=227 Identities=8% Similarity=-0.021 Sum_probs=195.7
Q ss_pred hhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCC----------chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-
Q psy16611 100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNN----------MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ- 168 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~- 168 (341)
+.+.+-...+..+|++. .+|...+.++...+. +++++.++..++..+|.+..+|+..+.++...++
T Consensus 48 eaL~~t~~~L~~nP~~y---taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 48 SVLELTSQILGANPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHCchhH---HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 44555556677788887 778888888877665 6899999999999999999999999999999984
Q ss_pred -hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc----------
Q psy16611 169 -PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAIGI---------- 236 (341)
Q Consensus 169 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~---------- 236 (341)
+++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+ ..+|...+.++...
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhhcccccccc
Confidence 8999999999999999999999999999999998 599999999999999999 99999999999877
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16611 237 ----SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE-----------GHIERASTYLQAAAASSPYLYETHYNQAVIS 301 (341)
Q Consensus 237 ----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 301 (341)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.+++++++.|++.-.+..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5689999999999999999999998777666555 4689999999999999999855544444433
Q ss_pred H---HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 302 N---LAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 302 ~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
. ..|..++...++.+.++++|-....|.-+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 2 35788899999999999999887665443
No 102
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=8.5e-18 Score=151.83 Aligned_cols=202 Identities=14% Similarity=0.115 Sum_probs=131.9
Q ss_pred HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16611 120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFN 191 (341)
Q Consensus 120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 191 (341)
.++..+|.+|.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++.+. .++.+++
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~ 295 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQY 295 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Confidence 344445555554 55555555555555543 345566666666665 56666666666666544 3556666
Q ss_pred HHHHHHHHc-----CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 192 NLALCCFYS-----QQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 192 ~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
.+|.+|... +++++|+.+|+++++. .+ ..+++++|.+|...| ++++|+.+|+++++. .++.+++++
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 369 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 666666665 6677777777766654 33 566777777776655 667777777777765 457777777
Q ss_pred HHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q psy16611 264 AVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPG---HSYSWDILR 332 (341)
Q Consensus 264 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~ 332 (341)
|.+|.. .+++++|+.+|+++++.. ++.+++++|.+|.. .+++++|+.+|+++++..|+ ++.+...++
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 777777 677777777777777653 56677777777777 77778888888887777743 555555544
Q ss_pred H
Q psy16611 333 K 333 (341)
Q Consensus 333 ~ 333 (341)
.
T Consensus 448 ~ 448 (490)
T 2xm6_A 448 K 448 (490)
T ss_dssp T
T ss_pred h
Confidence 3
No 103
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=5.5e-17 Score=146.54 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=108.8
Q ss_pred HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16611 120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFN 191 (341)
Q Consensus 120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 191 (341)
.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++... .++.+++
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 151 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ 151 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 344455555555 55555555555555443 245555555555554 45555555555555443 2445555
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 192 NLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 192 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
.+|.+|.. .+++++|+.+|+++++. .+ ..+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 225 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GN--VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHL 225 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 55555554 45555555555555543 23 5555555555555 55555555555555543 244555555
Q ss_pred HHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 264 AVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 264 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
|.+|.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++.+. +++.++..++.+.
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 555554 55555566555555543 334555666666665 56666666666666543 3455555555544
Q ss_pred H
Q psy16611 336 Q 336 (341)
Q Consensus 336 ~ 336 (341)
.
T Consensus 302 ~ 302 (490)
T 2xm6_A 302 D 302 (490)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.81 E-value=2.1e-19 Score=150.21 Aligned_cols=194 Identities=15% Similarity=0.043 Sum_probs=162.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+..+|..+...|++++|+..|++++..+|++..+++++|.+|...|++++|+..|+++++++|++..+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|++++|+..|+++++++|++ ...+........ ...++...........+.+..+...++.++ .|++++|++.
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~ 157 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQ--RLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEE 157 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 999999999999999999876 221111111111 122233333444456677788877777765 7999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLA-GDLQESYNIVKKSLDL 320 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 320 (341)
++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999888888888877776 7789999999988764
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=5.2e-19 Score=133.09 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 173 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 173 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
...|++++..+|++...++.+|.++...|++++|+..|++++..+|.+ ..+|+.+|.++...|++++|+..|++++.+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345677777888888888888888888888888888888888888888 888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16611 253 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294 (341)
Q Consensus 253 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 294 (341)
+|+++.+++++|.++...|++++|+..|+++++++|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888888888888888888888888888888888877766543
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.80 E-value=6.9e-18 Score=124.14 Aligned_cols=133 Identities=26% Similarity=0.390 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 268 (341)
+++.+|.++...|++++|+..+++++...|.+ ...+..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 34455555555555555555555555555555 5555555555555555555555555555555555555555555555
Q ss_pred HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
..|++++|+..+++++...|.+..++..++.++...|++++|..++++++..+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 5555555555555555555555555555666666666666666666666555554
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.80 E-value=1.8e-19 Score=154.63 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=145.3
Q ss_pred HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHH
Q psy16611 131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---------------AELFNNLAL 195 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 195 (341)
..+++++|+..+++++...|.+..++..+|.+++..|++++|+..|++++.+.|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
++...|++++|+.+|+++++++|.+ ..+++++|.++..+|++++|+..|+++++++|++..++..++.++...|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHh
Q psy16611 276 A-STYLQAAAAS 286 (341)
Q Consensus 276 A-~~~~~~al~~ 286 (341)
| ...|++++..
T Consensus 283 a~~~~~~~~~~~ 294 (336)
T 1p5q_A 283 REKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 9 5577777653
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.79 E-value=1.2e-17 Score=122.91 Aligned_cols=134 Identities=25% Similarity=0.381 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 233 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 233 (341)
.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.. ...+..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH
Confidence 3566677777777777777777777777777777777777777777777777777777777777776 67777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77777777777777777777777777777777777777777777777777776664
No 109
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=7.4e-18 Score=147.12 Aligned_cols=169 Identities=19% Similarity=0.161 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chH
Q psy16611 155 AIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAA 223 (341)
Q Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~ 223 (341)
.++.+|..+...|++++|+.+|++++...+ ....+++.+|.+|...|++++|+.++++++.+.+.. ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567889999999999999999999998732 346789999999999999999999999999986543 236
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCchh
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIERASTYLQAAAA-----SSPYLYE 292 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 292 (341)
.++.++|.++...|++++|+.+|++++++.+ ....++.++|.+|...|++++|+.+|++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 6889999999999999999999999998743 1246889999999999999999999999999 6777788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
++.++|.++...|++++|+.++++++.+.+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998654
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=1.3e-18 Score=130.09 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 174 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 174 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|.+ ..+|+.+|.++...|++++|+..|++++.++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45667777777777888888888888888888888888888888887 8888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
|+++.+++.+|.++...|++++|+..|+++++++|+++........+
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 88888888888888888888888888888888877776655444443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=7.4e-19 Score=160.28 Aligned_cols=194 Identities=10% Similarity=0.001 Sum_probs=173.3
Q ss_pred HHHHcCCch-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16611 128 IFEGLNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYNDQ----------PEVALLFYRRLLQMGLYNAELFNNLALC 196 (341)
Q Consensus 128 ~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 196 (341)
.....|++. +|+..+.+++..+|++..+|+..+.++...|+ +++++.+++++++.+|++..+|+..+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334556554 67999999999999999999999999999888 9999999999999999999999999999
Q ss_pred HHHcC--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---
Q psy16611 197 CFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE--- 270 (341)
Q Consensus 197 ~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--- 270 (341)
+...+ ++++++++++++++.+|.+ ..+|...+.++...| .+++++++++++++.+|.+..+|+..+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 99999 6799999999999999999 999999999999999 899999999999999999999999999998885
Q ss_pred -----------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH------------HHHHHHHHHhcCCC
Q psy16611 271 -----------GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE------------SYNIVKKSLDLHPG 323 (341)
Q Consensus 271 -----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~al~~~p~ 323 (341)
+.++++++++.+++.++|++..+|+.++.++...+++++ |+..|.+++.++|.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 568999999999999999999999999999998888665 45556666666654
No 112
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=3.5e-17 Score=146.08 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=89.0
Q ss_pred hhhcHHHHHHHcC---CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16611 121 SRLNLAKIFEGLN---NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----DQPEVALLFYRRLLQMGLYNAELFNNL 193 (341)
Q Consensus 121 ~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l 193 (341)
+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 3444444444444 455555555555555544444445555554433 44555555555544 4444555555
Q ss_pred HHH-H--HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 194 ALC-C--FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-----DTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 194 a~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
|.+ + ...+++++|+.+|+++.+. .+ +.+++++|.+|. .| ++++|+.+|+++. +.++.+++++|.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~--~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQ--PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CC--HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 554 2 2344555555555554433 23 445555555544 23 4555555555544 444555555554
Q ss_pred HHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q psy16611 266 LEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDL 320 (341)
Q Consensus 266 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 320 (341)
+|.. ..++++|+.+|+++.+ +.++.+.++||.+|.. ..++.+|..+|+++.+.
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 4443 2245555555555443 2334444555555443 23455555555555443
No 113
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.78 E-value=4.8e-17 Score=141.55 Aligned_cols=200 Identities=10% Similarity=-0.025 Sum_probs=84.6
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCcH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNA 187 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 187 (341)
+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++... |...
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3344444444455555555544444432221 1123344444444455555555544444432 1223
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHH-
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQN- 261 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~- 261 (341)
.++..+|.++...|++++|..++++++...+.. ....++..+|.++...|++++|..++++++.+.+. ....+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 334444444444455555555555444443321 01234444444444445555555555444443211 100110
Q ss_pred ----HHHHHHHHhCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 262 ----NLAVLEAREGHIERASTYLQAAAASSPYL----YETHYNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 262 ----~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
.++.++...|++++|...+++++...+.. ...+..++.++...|++++|...+++++...
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 12223444455555555544444433321 1123344444445555555555555544443
No 114
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=3.4e-17 Score=146.13 Aligned_cols=201 Identities=11% Similarity=0.034 Sum_probs=175.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHH----HHHHHHhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKY----YKLILKRDATCMEAIACIGVNHFYND---QPEVALLFYRRLLQMGLYNAELFNN 192 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~----~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 192 (341)
.+++.+|.+|...+.++++... ++.+...+ +.+++.+|.+|...| ++++|+.+|+++...++.....+++
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~ 218 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDS 218 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7899999999999977666555 44444444 449999999999999 9999999999999999999999999
Q ss_pred HHHHHHHc----CChhHHHHHHHHHHhhccccchHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 193 LALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHV-A--IGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 193 la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
+|.+|... +++++|+.+|+++. |.+ +.+++++|.+ + ...+++++|+.+|+++.+. .++.+++++|.
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA---PGY--PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG---GGS--THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 99999776 79999999999998 788 9999999999 5 5789999999999999865 48999999999
Q ss_pred HHHHhC-----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 266 LEAREG-----HIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 266 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+. .++.+.+.++.+..
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS 365 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 998 66 9999999999998 8899999999999887 44999999999999874 55677777776653
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.9e-18 Score=123.28 Aligned_cols=116 Identities=11% Similarity=-0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
...+..+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHh
Q psy16611 303 LAGDLQESYNIVKKSLDLH------PGHSYSWDILRKLEQYF 338 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 338 (341)
.+|++++|+..|++++.++ |++..++..+..+.+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 8888888888888888888 88888777777776543
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=4e-17 Score=137.91 Aligned_cols=229 Identities=8% Similarity=-0.020 Sum_probs=188.3
Q ss_pred hhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcC-CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q psy16611 100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLN-NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-D-QPEVALLFY 176 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~ 176 (341)
+.+.+-...+..+|++. .+|...+.++...| .+++++..+..++..+|++..+|+..+.++... + ++++++.++
T Consensus 72 ~AL~lt~~~L~~nP~~y---taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHY---TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCchhH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45556666777888888 78888888888888 599999999999999999999999999999887 7 889999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCChh--------HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC-------HHH
Q psy16611 177 RRLLQMGLYNAELFNNLALCCFYSQQYD--------MVVTCFERALSLALNENAADVWYNISHVAIGISD-------TRL 241 (341)
Q Consensus 177 ~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~-------~~~ 241 (341)
.++++.+|.+..+|...+.++...+.++ +++++++++++.+|.+ ..+|...+.++...++ +++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccccchHHHHH
Confidence 9999999999999999999998888888 9999999999999999 9999999999988887 789
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHHhC------CCchhHHH
Q psy16611 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHI--------------------ERASTYLQAAAASS------PYLYETHY 295 (341)
Q Consensus 242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~ 295 (341)
+++++++++..+|++..+|+.+..++...|+. .+-.......+... +..+.++.
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 99999999999999999999988888887764 22222222222222 35566888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSL-DLHPGHSYSWDILRK 333 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~ 333 (341)
.++.+|...|+.++|.++|+... +.+|-....|.....
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 89999999999999999999986 678888887766543
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.78 E-value=2.9e-18 Score=133.14 Aligned_cols=129 Identities=10% Similarity=0.104 Sum_probs=65.7
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCH--HHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHI--ERA 276 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~~A 276 (341)
.|++++|+..+++++..+|.+ ..+|+.+|.++...|++++|+.+|+++++.+|.+..++..+|.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQN--SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 444555555555555555555 55555555555555555555555555555555555555555555 4455554 555
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
+..|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++......
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 555555555555555555555555555555555555555555555554443333
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=1.2e-17 Score=141.55 Aligned_cols=190 Identities=12% Similarity=0.009 Sum_probs=157.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NA 187 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~ 187 (341)
..+...+.+|...|++++|+..|.+++...+.. ..++..+|.+|...|++++|+.+|++++.+.+. ..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345556788999999999999999999876432 567889999999999999999999999987432 24
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------H
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------G 257 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 257 (341)
.++.++|.+|.. |++++|+.+|++++.+.+.. ....++.++|.++..+|++++|+.+|++++++.+.+ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 678999999999 99999999999999997654 225789999999999999999999999999986543 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHcCCHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-----THYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 312 (341)
.++..+|.++...|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 478889999999999999999999999 9987654 344555555 5677655544
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.78 E-value=2e-18 Score=144.35 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=147.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16611 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 229 (341)
|.+...++.+|..+...|++++|+..|++++..+|.+..+++++|.++...|++++|+..|+++++++|++ ..+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 309 (341)
|.++...|++++|+..|+++++++|++...+........ +..++...........+.+..+...++.++ .|++++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999998866332222222222 222333333444456677778877787765 799999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 310 SYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 310 A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
|+..++++++++|++......+..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred HHHHHHhhhccccchhhhhhHHHHHH
Confidence 99999999999999876665555443
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.77 E-value=9.1e-17 Score=135.70 Aligned_cols=184 Identities=8% Similarity=-0.046 Sum_probs=169.6
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 200 (341)
+-.+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++.+++..+|++..+|+..+.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3333445555566678999999999999999999999999999999 599999999999999999999999999999998
Q ss_pred -C-ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 201 -Q-QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR--------LAIQCLHLALSIDSSHGLSQNNLAVLEARE 270 (341)
Q Consensus 201 -~-~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 270 (341)
+ +++++++++.++++.+|.+ ..+|...+.++...|.++ +++++++++++.+|.+..+|+..+.++...
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkN--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKN--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTC--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 7 9999999999999999999 999999999999888887 999999999999999999999999999998
Q ss_pred CC-------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16611 271 GH-------IERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307 (341)
Q Consensus 271 g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 307 (341)
++ ++++++++++++.++|++..+|+.+..++...|+.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 87 79999999999999999999999999999888764
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.77 E-value=5.9e-17 Score=129.57 Aligned_cols=170 Identities=10% Similarity=-0.004 Sum_probs=152.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND----QPEVALLFYRRLLQMGLYNAELFNNLAL 195 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~ 195 (341)
.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++++|.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 78999999999999999999999999875 589999999999998 7 89999999999975 568999999999
Q ss_pred HHHH----cCChhHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 196 CCFY----SQQYDMVVTCFERALSLAL--NENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 196 ~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
+|.. .+++++|+.+|+++++..+ .. +.+++++|.+|.. .+++++|+.+|+++++. +.++.+++++|.
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAA--VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH--HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcch--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 9998 8999999999999999988 45 8899999999999 89999999999999998 677889999999
Q ss_pred HHHHh-C-----CHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16611 266 LEARE-G-----HIERASTYLQAAAASSPYLYETHYNQAV 299 (341)
Q Consensus 266 ~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 299 (341)
+|... | ++++|+.+|+++++... ..+...++.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99764 3 89999999999998753 445555443
No 122
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.77 E-value=8.7e-19 Score=138.76 Aligned_cols=160 Identities=14% Similarity=0.059 Sum_probs=96.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc--------------hHHH
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN--------------AADV 225 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------------~~~~ 225 (341)
+......|+++++.+.+.......+.....+..+|..++..|++++|+..|++++.+.|.+. ...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33334444455554444444444444444555555555555555555555555555544440 0267
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 305 (341)
+.++|.++...|++++|+.+++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.++...+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred CHHHHH-HHHHHHHh
Q psy16611 306 DLQESY-NIVKKSLD 319 (341)
Q Consensus 306 ~~~~A~-~~~~~al~ 319 (341)
+..++. ..|.+.+.
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 777666 44444443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.77 E-value=5.4e-17 Score=136.55 Aligned_cols=172 Identities=10% Similarity=-0.027 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---
Q psy16611 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVTCFERALSLALNE--- 220 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--- 220 (341)
|.....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34455667788888899999999999999998877644 345678888888999999999999999765433
Q ss_pred -chHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---
Q psy16611 221 -NAADVWYNISHVAIGISDTRLAIQCLHLAL---SIDSSHG----LSQNNLAVLEAREGHIERASTYLQAAAASSPY--- 289 (341)
Q Consensus 221 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 289 (341)
....+++++|.+|...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.++++++++.++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 225688999999999999999999999999 4455532 68899999999999999999999999987532
Q ss_pred ---chhHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q psy16611 290 ---LYETHYNQAVISNLAGDLQES-YNIVKKSLDLH 321 (341)
Q Consensus 290 ---~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~ 321 (341)
...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 156889999999999999999 78899998764
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.77 E-value=5.6e-17 Score=129.63 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=45.3
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 201 (341)
++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444444444555555555444443 11 34444444444444444444444444444444444444444444444444
Q ss_pred ChhHHHHHHHHHHhhccc
Q psy16611 202 QYDMVVTCFERALSLALN 219 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~ 219 (341)
++++|+..|++++...|.
T Consensus 86 ~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp CHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHhCCC
Confidence 444444444444444443
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.77 E-value=3.8e-17 Score=130.57 Aligned_cols=133 Identities=15% Similarity=0.061 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 233 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 233 (341)
..++.+|.++...|++++|+..|++++ .| ++.+++.+|.++...|++++|+..|++++..+|.+ ..+++++|.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHH
Confidence 456677888888888888888887774 22 66777788888888888888888888888887777 77788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHG----------------LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
...|++++|+..|+++++..|.+. .+++++|.++...|++++|+..|++++++.|++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 888888888888888887766655 7777777777777888888888887777777653
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-17 Score=120.11 Aligned_cols=116 Identities=16% Similarity=0.009 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
.+..+..+|..++..|++++|+..|++++..+|.+ ..+|+++|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44566666777777777777777777777777766 6677777777777777777777777777777777777777777
Q ss_pred HHHHhCCHHHHHHHHHHHHHhC------CCchhHHHHHHHHHHH
Q psy16611 266 LEAREGHIERASTYLQAAAASS------PYLYETHYNQAVISNL 303 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 303 (341)
++...|++++|+..|+++++++ |.+..++..++.+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 7777777777777777777766 6666666666655543
No 127
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=7.5e-17 Score=140.35 Aligned_cols=202 Identities=12% Similarity=-0.015 Sum_probs=121.3
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----cHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRD--------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-----NAE 188 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~ 188 (341)
+.++|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4556666777777777777777766643 222345556677777777777777777777665543 234
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAAD--VW--YNISHVAIGISDTRLAIQCLHLALSIDSSH----GLS 259 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~ 259 (341)
++..+|.++...|++++|..++++++.+.+.. .... .. ...+.++...|++++|...+++++...+.. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 56666777777777777777777766653321 0011 11 123344566677777777777766655432 224
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 323 (341)
+..++.++...|++++|...+++++...+.. ..++..++.++...|++++|...+++++.+.+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5566666777777777777777666553321 125556666677777777777777777666543
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.76 E-value=1.4e-17 Score=129.28 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHcCCh--hH
Q psy16611 129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC-CFYSQQY--DM 205 (341)
Q Consensus 129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~ 205 (341)
+...|++++|+..+++++..+|++..+++.+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777 6677776 77
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL 258 (341)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 258 (341)
|+.+|++++..+|.+ ..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 100 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 777777777777777 777777777777777777777777777777776643
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.75 E-value=9e-17 Score=122.91 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
..++.+|.+++..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..++++++.+|.+..+++.+|.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445556666666666666666666666666665 666666666666666666666666666666666666666666666
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH--HHHHcCCHHHHHHHHHHHHh
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAV--ISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~ 319 (341)
...|++++|+.+|+++++++|.+..++..++. .+...|++++|+..+.++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66666666666666666666666555533333 35556666666666665543
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.5e-16 Score=145.08 Aligned_cols=168 Identities=11% Similarity=0.073 Sum_probs=159.4
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc
Q psy16611 167 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ----------YDMVVTCFERALSLALNENAADVWYNISHVAIGI 236 (341)
Q Consensus 167 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 236 (341)
...++|++.+.+++..+|++..+|+..+.++...++ ++++++.++++++.+|++ ..+|+..+.++...
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--YGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Confidence 345688999999999999999999999999999998 999999999999999999 99999999999999
Q ss_pred C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---------
Q psy16611 237 S--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSPYLYETHYNQAVISNLA--------- 304 (341)
Q Consensus 237 g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------- 304 (341)
+ ++++++++++++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|...+.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 9 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 305 -----GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 305 -----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
+.++++++++.+++.++|++..+|..+..+..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 56899999999999999999999998877654
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.75 E-value=4.9e-17 Score=124.56 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
+.+...++.+|.+++..|++++|+.+|++++.++|.+ ..+|+++|.++...|++++|+..|+++++++|++..+++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4455667777777777777777777777777777777 77777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
|.++..+|++++|+.+|+++++++|++..++...+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7777777777777777777777777776655555444
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.75 E-value=1.4e-16 Score=121.74 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
+..++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++..+|.+ ..+++.+|.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHH
Confidence 45667777777777888888888888877777777778888888888888888888888888887777 7778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHh
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV--LEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~ 286 (341)
+...|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.+...+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888888888777777644443 367778888888887776543
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.74 E-value=2.1e-16 Score=132.91 Aligned_cols=168 Identities=13% Similarity=-0.028 Sum_probs=143.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------H
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------A 187 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~ 187 (341)
..+...+..+...|++++|+..++++++..+... ..++.+|.++...|++++|+.+|++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4556778899999999999999999999877654 345678999999999999999999999865443 5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhh---cccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSL---ALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------H 256 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 256 (341)
.+++.+|.+|...|++++|+.+|++++.+ .+.. ....+++++|.+|..+|++++|+.++++++++.+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 68999999999999999999999999954 4443 12368999999999999999999999999987532 2
Q ss_pred HHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhC
Q psy16611 257 GLSQNNLAVLEAREGHIERA-STYLQAAAASS 287 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~ 287 (341)
..+++++|.+|..+|++++| ..+|++++.+.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 77899999999999999999 88899998753
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.74 E-value=1.3e-16 Score=134.27 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=129.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHH
Q psy16611 157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE------LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVW 226 (341)
Q Consensus 157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~ 226 (341)
...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++...+.. ....++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34566777888899999999888887665544 33457888888889999999999998865443 124478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhH
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALSID-------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YET 293 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 293 (341)
.++|.+|...|++++|+.+|+++++.. +....+++++|.+|..+|++++|+.++++++++.+.. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 899999999999999999999998531 2235578899999999999999999999998876433 568
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q psy16611 294 HYNQAVISNLAG-DLQESYNIVKKSLDLH 321 (341)
Q Consensus 294 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 321 (341)
++++|.++..+| .+++|+.+|++++.+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 899999999999 4699999999998763
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.74 E-value=1.6e-17 Score=131.47 Aligned_cols=149 Identities=11% Similarity=-0.047 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-----------
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG----------- 257 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------- 257 (341)
.....+......|+++++.+.+.......+.. ...+..+|.+++..|++++|+..|+++++..|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 34455666777888888888888777666666 88999999999999999999999999999999887
Q ss_pred -----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 258 -----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 258 -----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
.++.++|.++...|++++|+.++++++.++|++..+++.+|.++..+|++++|+.+|++++.++|++..++..++
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhh
Q psy16611 333 KLEQYFS 339 (341)
Q Consensus 333 ~~~~~~~ 339 (341)
.+...++
T Consensus 164 ~~~~~~~ 170 (198)
T 2fbn_A 164 LCVNKLK 170 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.74 E-value=1e-16 Score=117.78 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=75.4
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
|.....++.+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+.+++++++.+|.+..+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 4445556666666666666666666666666666665 66666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16611 264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305 (341)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 305 (341)
|.++...|++++|+.+|+++++.+|.+..++..++.++..+|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666665554
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.74 E-value=3.4e-17 Score=119.74 Aligned_cols=111 Identities=15% Similarity=0.047 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-------hHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-------ETHY 295 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 295 (341)
..++.++|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 667788888888888888888888888888888888888888888888888888888888888876553 3678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
++|.++..+|++++|+.+|++++...|+ ++....+..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 8888899999999999999999988875 4444444433
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.74 E-value=1.4e-16 Score=134.05 Aligned_cols=166 Identities=13% Similarity=-0.025 Sum_probs=139.9
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCME------AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AEL 189 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 189 (341)
.......+...|++++|+..+++++...+.... .+..+|.++...+++++|+.+|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334567888999999999999999998776655 23358999999999999999999999864432 347
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhcc---cc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLAL---NE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GL 258 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 258 (341)
+.++|.+|...|++++|+.+|+++++... .+ ....+++++|.+|..+|++++|+.++++++++.+.. +.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999995321 11 236789999999999999999999999999876433 78
Q ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHhC
Q psy16611 259 SQNNLAVLEAREG-HIERASTYLQAAAASS 287 (341)
Q Consensus 259 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 287 (341)
+++++|.++..+| .+++|+.+|++++.+.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999999 5799999999999753
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.74 E-value=1.3e-17 Score=123.90 Aligned_cols=114 Identities=13% Similarity=0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-------HG-----LSQNNLAVLEAREGHIERASTYLQAAAAS---- 286 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 286 (341)
...+.+.|..++..|+|++|+..|+++++++|+ +. .+|.++|.++..+|+|++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445566666666666666666666666666666 33 37788888888888888888888888888
Q ss_pred ---CCCchhHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 287 ---SPYLYETH----YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 287 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+..+.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 88888888 888888888888888888888888888877555444444433
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.74 E-value=7.8e-17 Score=123.40 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16611 152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231 (341)
Q Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 231 (341)
+...++.+|.++...|++++|+.+|++++..+|.+..+++.+|.+|...|++++|+.+|++++.++|.+ ..+|+.+|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666666666666666 666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
++...|++++|+.+|+++++++|++...+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 6666666666666666666666666555444443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.73 E-value=1.2e-16 Score=116.77 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
+...+..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..++++++.+|.+..+++.+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34444455555555555555555555555555544 4555555555555555555555555555555555555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16611 266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 306 (341)
++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555544443
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-16 Score=116.61 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=87.9
Q ss_pred CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16611 114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 193 (341)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 193 (341)
..+....++..+|..+...|++++|+..|++++..+|.+..+++.+|.++...|++++|+.+|++++...|.+..+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 33444467777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS 237 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 237 (341)
|.++...|++++|+.+|++++..+|.+ ..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSC--KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGG--THHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhc
Confidence 777777777777777777777777766 667777777766554
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.72 E-value=6.2e-18 Score=151.00 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-------------chHHHHHHHHHHHHh
Q psy16611 169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-------------NAADVWYNISHVAIG 235 (341)
Q Consensus 169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~~~la~~~~~ 235 (341)
+++|+..|+.++...|.....+..+|.+++..|+|++|+..|++++.+.|.+ ....+|+++|.+|..
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555555555555555555444443 014667777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16611 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 312 (341)
+|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|..
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777766654
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.72 E-value=8.7e-18 Score=150.08 Aligned_cols=152 Identities=13% Similarity=0.194 Sum_probs=137.4
Q ss_pred HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHH
Q psy16611 131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---------------AELFNNLAL 195 (341)
Q Consensus 131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 195 (341)
..+++++|+..|+.++...|.....+..+|.+++..|++++|+..|++++.+.|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999998889899999999999999999999999999999999988 689999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
+|..+|++++|+.+|++++.++|.+ ..+++++|.+|..+|++++|+..|+++++++|++..++..++.++...+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred HHHH-HHHHH
Q psy16611 276 ASTY-LQAAA 284 (341)
Q Consensus 276 A~~~-~~~al 284 (341)
+... |++++
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 8753 44433
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.72 E-value=1.5e-16 Score=116.31 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16611 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 229 (341)
|.+...+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.+ ..+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHH
Confidence 34566777778888888888888888888888888778888888888888888888888888888887777 7788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16611 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 273 (341)
|.++...|++++|+.+|+++++.+|++..++..++.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888887777764
No 146
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.72 E-value=8.8e-16 Score=127.26 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q psy16611 138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDMVVTCFERALS 215 (341)
Q Consensus 138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 215 (341)
|+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78899998887666777788999999999999999999999999987 8899999999999999999999999999999
Q ss_pred hccc----cchHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 216 LALN----ENAADVWYNI--SHVAIGIS--DTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 216 ~~~~----~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
.+|+ + -.+...+ +.+.+..| ++.+|...|+++....|+ ....+++ ++..+|++++|...++.+++
T Consensus 165 ~~~d~~~~~--d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 AIEDTVSGD--NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HSCHHHHHH--HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHS
T ss_pred cCccccccc--hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence 9883 2 2334444 44455556 999999999999988887 3344444 89999999999999998877
Q ss_pred h----------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16611 286 S----------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR 332 (341)
Q Consensus 286 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 332 (341)
. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++.......
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 6 48899999999999999998 899999999999999987665443
No 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.72 E-value=2.1e-16 Score=120.71 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSI------------------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..+...|..++..|+|++|+..|.+++.. +|.+..+++++|.++..+|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34444444444444444444444444444 444455666666666666666666666666666
Q ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q psy16611 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS-YSWDILRKLEQY 337 (341)
Q Consensus 286 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~ 337 (341)
++|++..+++.+|.++..+|++++|+..|++++.++|++. .+...+..+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666665 445555554443
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.71 E-value=1.7e-16 Score=114.86 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 304 AGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 304 ~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 88888888888888888887643
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=4.7e-16 Score=123.07 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=93.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------ccccchHHHHHHHHHHHHhcCC
Q psy16611 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISD 238 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~ 238 (341)
..|++++|++.++......+....++..+|.++...|++++|+.++++++.+ .+.. ..++.++|.++...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHcCC
Confidence 4456666666444333322245556666666666666666666666666663 2222 5566667777777777
Q ss_pred HHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--c----hhHHHHHHHHHHHcC
Q psy16611 239 TRLAIQCLHLALSI---DSS----HGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--L----YETHYNQAVISNLAG 305 (341)
Q Consensus 239 ~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g 305 (341)
+++|+.++++++++ .++ ...++.++|.++...|++++|+.++++++.+.+. + ..++.++|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777776665 232 2345666777777777777777777777654321 1 124567777777777
Q ss_pred CHHHHHHHHHHHHhcC
Q psy16611 306 DLQESYNIVKKSLDLH 321 (341)
Q Consensus 306 ~~~~A~~~~~~al~~~ 321 (341)
++++|..++++++++.
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7777777777777664
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.71 E-value=5.5e-16 Score=114.68 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
+..++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 55555666666666666666666666666666555666666666666666666666666666666665556666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Q psy16611 303 LAGDLQESYNIVKKSLDLHPG-----HSYSWDILRKLE 335 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 335 (341)
..|++++|+..|++++.+.|+ +...+..+..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 666666666666666655555 444444444443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=1.7e-15 Score=108.54 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 66788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
..|++++|..+|+++++.+|++..++..++.+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 8888888888888888888888888887777653
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.70 E-value=1.6e-15 Score=109.76 Aligned_cols=113 Identities=26% Similarity=0.369 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
..++.+|.++...|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344444444444444444444444444444444 444444444444444444444444444444444444444444444
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
...|++++|+..|++++..+|++..++..++.++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=8.3e-16 Score=112.28 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYN 228 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~ 228 (341)
.++..+|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|.. ....++.+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666666655544 11234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p 254 (341)
+|.++..+|++++|+++|++++...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 55555555555555555555555444
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=2.5e-17 Score=134.74 Aligned_cols=186 Identities=9% Similarity=-0.118 Sum_probs=159.6
Q ss_pred hcccCCCCCchhHhhhcH-------HHHHHHcCCchHHHHHHHHHHHhCCCCH---------------------HHHHHH
Q psy16611 108 SMLSQPDGPFIQVSRLNL-------AKIFEGLNNMPMSVKYYKLILKRDATCM---------------------EAIACI 159 (341)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------~~~~~l 159 (341)
++..+|+.+ .+|+++ +.++...+++.+++..+.+.+.+.|... ++...+
T Consensus 32 a~~~dP~~~---Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~Lay 108 (282)
T 4f3v_A 32 ITNYDESAC---DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGF 108 (282)
T ss_dssp HHHHCTTCH---HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHH
T ss_pred HHHhChhhh---HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHH
Confidence 445566666 889988 7999999999999999999999777643 344558
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCH
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDT 239 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 239 (341)
+.++...|++++|.+.|..++...|.+. +.+.+|.+++..++|++|+.+|+++....+......+++++|.++..+|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 8999999999999999999999999888 999999999999999999999998876532211245899999999999999
Q ss_pred HHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 240 RLAIQCLHLALSID--SS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 240 ~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
++|+.+|++++... |. ...+++++|.++..+|+.++|...|++++..+|+ ..++..|.
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999998654 55 5679999999999999999999999999999998 77666554
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.70 E-value=5.4e-16 Score=114.72 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN 262 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 262 (341)
.|.++..++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++...|++++|+..|+++++++|++..+++.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 44555666666666666666666666666666666666 6666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHH
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPY-----LYETHYNQAVISN 302 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~ 302 (341)
+|.++...|++++|+..|+++++++|+ +..++..+..+..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666555 3444444444443
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=6.8e-16 Score=122.12 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=131.6
Q ss_pred HHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHcCCh
Q psy16611 130 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ------MGLYNAELFNNLALCCFYSQQY 203 (341)
Q Consensus 130 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~ 203 (341)
+..|++++|+..++......+....++..+|.++...|++++|+.+|++++. ..+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 5689999999966655553336788999999999999999999999999998 4455678899999999999999
Q ss_pred hHHHHHHHHHHhh---cccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhCC
Q psy16611 204 DMVVTCFERALSL---ALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS--SH----GLSQNNLAVLEAREGH 272 (341)
Q Consensus 204 ~~A~~~~~~al~~---~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g~ 272 (341)
++|+.++++++.+ .+++ ....++.++|.++...|++++|+.+++++++..+ .+ ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999998 2311 2367799999999999999999999999997642 22 3457899999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q psy16611 273 IERASTYLQAAAASSP 288 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p 288 (341)
+++|+.++++++++..
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=1.8e-16 Score=117.78 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccc-------c---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALN-------E---NAADVWYNISHVAIGISDTRLAIQCLHLALSI----- 252 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 252 (341)
..+...|..++..|+|++|+..|+++++++|+ + ....+|.++|.++..+|+|++|+..|++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455555666666666666666666666555 3 01448888888888889999988888888888
Q ss_pred --CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 253 --DSSHGLSQ----NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 253 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99998888 9999999999999999999999999888776654444433
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.69 E-value=2.5e-15 Score=108.70 Aligned_cols=121 Identities=26% Similarity=0.434 Sum_probs=98.4
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16611 149 DATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227 (341)
Q Consensus 149 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (341)
+|.. ..+++.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.++++++...|.+ ..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWY 81 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHH
Confidence 3444 66778888888888888888888888888888888888888888888888888888888888888887 88888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
.+|.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888888888888776654
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=5.3e-16 Score=118.49 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhh------------------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSL------------------ALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (341)
..+...|..++..|+|++|+..|++++.+ +|.. ..+++++|.++..+|++++|+..++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN--IPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH--HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455555555555555555555555555 5666 788888888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCC
Q psy16611 250 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGD 306 (341)
Q Consensus 250 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~ 306 (341)
++++|.++.+++.+|.++..+|++++|+..|++++.++|++. .+...++.+....++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887 566667666655443
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.68 E-value=2.9e-15 Score=109.53 Aligned_cols=115 Identities=12% Similarity=0.009 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHH
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQ 297 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 297 (341)
..++.+|.++...|++++|+..|+++++..|++. .+++.+|.++...|++++|+..|++++...|++ ..+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3466778888888888888888888888877776 678888888888888888888888888888877 6678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
|.++..+|++++|+..|++++...|++..+......+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 88888888888888888888888888877777666665543
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-15 Score=111.68 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=96.4
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16611 217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 293 (341)
Q Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 293 (341)
.+.. ...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|++..+
T Consensus 24 ~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 24 GASS--VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TCCC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred chHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3445 7778888888888888888888888888888876 7788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 294 HYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
++.+|.++...|++++|+.+|++++.++|++..++..+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888877776653
No 162
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=7.4e-15 Score=141.17 Aligned_cols=196 Identities=10% Similarity=-0.050 Sum_probs=138.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..|..+|..+...|++++|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHh
Confidence 67788888888888888888888665 67778888888888888888888888877766533 2222235666666
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.+++++ ++.|. ...+ ...+..+|..+...|+|++|..+|.++ ..|..++.++.++|++++|++.
T Consensus 1180 l~rlee-le~fI-----~~~n--~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAE-LEEFI-----NGPN--NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHH-HHHHH-----hCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence 655553 22221 1122 345556777777777777777777774 3667777777777777777777
Q ss_pred HHHHHHhCC-------------------------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 280 LQAAAASSP-------------------------YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 280 ~~~al~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 334 (341)
++++....+ .+++.+..++..|...|.+++|+.++++++.+++.+...+..++.+
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 776633221 1334556788889999999999999999999999998888777766
Q ss_pred HHH
Q psy16611 335 EQY 337 (341)
Q Consensus 335 ~~~ 337 (341)
...
T Consensus 1324 yaK 1326 (1630)
T 1xi4_A 1324 YSK 1326 (1630)
T ss_pred HHh
Confidence 554
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=3.5e-15 Score=106.84 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
..++.+|.++...|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 444555555555555555555555555555555 555555555555555555555555555555555555555555555
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
...|++++|+..|+++++.+|++..++..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555555555555555555555555444
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.67 E-value=7.7e-16 Score=111.40 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
++.+|..+...|++++|+..|+++++.+|++ ..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555 55555555555555555555555555555555555555555555555
Q ss_pred hCCHHHHHHHHHHHHHhCCCc
Q psy16611 270 EGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~ 290 (341)
.|++++|+..|+++++++|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 555555555555555555543
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.66 E-value=3.6e-17 Score=146.70 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 266 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 266 (341)
+..+..+|.++...|++++|+..|+++++++|.+ ..++.++|.++..+|++++|+..|+++++++|++..+++++|.+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445566777777788888888888888888877 78888888888888888888888888888888888888888888
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q psy16611 267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVI--SNLAGDLQESYNIVK-----------KSLDLHPGH 324 (341)
Q Consensus 267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 324 (341)
|..+|++++|+..|+++++++|++..++..++.+ +...|++++|+..++ +++.+.|+.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 8888888888888888888888777777777777 777788888888887 666666654
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.66 E-value=1e-16 Score=137.48 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16611 141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 220 (341)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 220 (341)
.+...+...+.....+..+|..++..|++++|+.+|++++...|.+.. +...+++.++...+ .
T Consensus 167 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l---------~ 229 (338)
T 2if4_A 167 RSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV---------K 229 (338)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH---------H
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH---------H
Confidence 333344444556777888899999999999999999999888886541 22333444433222 1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16611 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300 (341)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 300 (341)
..+++++|.++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 230 --~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 230 --NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp --THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999999999998898888888
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 301 -SNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 301 -~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
....+..+++...|.+++...|+++.
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 44566778888899999999888754
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.65 E-value=6.6e-15 Score=107.47 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-------hhHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL-------YETHY 295 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 295 (341)
...++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++...|.+ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777776655 66777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 339 (341)
.+|.++...|++++|+.+|++++...| +...+..+..+...++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777 4666666666665543
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.65 E-value=2.6e-16 Score=134.92 Aligned_cols=154 Identities=8% Similarity=0.032 Sum_probs=95.3
Q ss_pred hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
...+..+|..++..|++++|+..|++++...|++. .+...++++++...+. ..+++++|.+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 35677889999999999999999999999998654 2334455555554432 247889999999
Q ss_pred HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCCHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE-AREGHIERAS 277 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 277 (341)
..|++++|+.+|++++.++|.+ ..+++++|.+|..+|++++|+..|+++++++|++..++..++.+. ...+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999999988884 4566788888
Q ss_pred HHHHHHHHhCCCch
Q psy16611 278 TYLQAAAASSPYLY 291 (341)
Q Consensus 278 ~~~~~al~~~p~~~ 291 (341)
..|.+++...|.+.
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888764
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.65 E-value=7e-17 Score=144.79 Aligned_cols=126 Identities=9% Similarity=0.023 Sum_probs=76.5
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+..+|..+...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|.+..+++++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHH--HHhcCCHHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHV--AIGISDTRLAIQCLH 247 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~ 247 (341)
+|++++|+..|+++++++|++ ..++..++.+ +...|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666666666666665 5555555555 555566666666666
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-15 Score=109.84 Aligned_cols=111 Identities=11% Similarity=-0.040 Sum_probs=55.9
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 196 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 196 (341)
..++.+|..+...|++++|+.+|+++++.+|++ ..+++.+|.++...|++++|+.+|++++..+|.+..+++.+|.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 444555555555555555555555555555544 44444555555555555555555555555555444455555555
Q ss_pred HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
+...|++++|+.+|++++.++|.+ ..++..++.+
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~ 142 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNI 142 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHH
Confidence 555555555555555555554444 4444444433
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-15 Score=132.77 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=169.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM-----------------EAIACIGVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 182 (341)
.+.+..|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999877632 35889999999999999999999999886
Q ss_pred CCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 183 GLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 183 ~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
.+.. ..+...++.++...|++++|+.++++++...+.. ....++..+|.++...|+|++|+..+++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 5443 2356678888888999999999999999875443 34778999999999999999999999999875
Q ss_pred C------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---c----hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 253 D------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY---L----YETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 253 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
. +....++..+|.+|...|++++|...+++++.+.+. . ...+..+|.++...|++++|..+|.+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 334678999999999999999999999999876432 2 23677888999999999999999999986
Q ss_pred c
Q psy16611 320 L 320 (341)
Q Consensus 320 ~ 320 (341)
.
T Consensus 245 ~ 245 (434)
T 4b4t_Q 245 S 245 (434)
T ss_dssp H
T ss_pred H
Confidence 5
No 172
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.63 E-value=1.4e-15 Score=112.77 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---
Q psy16611 238 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH----------IERASTYLQAAAASSPYLYETHYNQAVISNLA--- 304 (341)
Q Consensus 238 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--- 304 (341)
.|++|++.++++++++|+++.+|+++|.++...++ +++|+..|+++++++|++..+|+++|.+|..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444444444444433 33555555555555555555555555555554
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 305 --------GDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335 (341)
Q Consensus 305 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 335 (341)
|++++|+.+|+++++++|++...+..+..+.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3677777777777777777766666555443
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.63 E-value=2.5e-15 Score=106.58 Aligned_cols=105 Identities=10% Similarity=-0.039 Sum_probs=74.8
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chhHHH
Q psy16611 218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYETHY 295 (341)
Q Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 295 (341)
|.+ ..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|. +..++.
T Consensus 3 p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQN--PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSS--TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCc--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 444 5666677777777777777777777777777777777777777777777777777777777777777 667777
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q psy16611 296 NQAVISNLA-GDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 296 ~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 324 (341)
.+|.++... |++++|+.++++++...|++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777777777 77777777777777776654
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.63 E-value=8.9e-15 Score=126.73 Aligned_cols=141 Identities=17% Similarity=0.068 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 232 (341)
...+..+|..+...|++++|+..|+++++..+... .....++.....|.. ..++.++|.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVA--LSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHH--HHHHHHHHHH
Confidence 45566777777777777777777777776433221 111233444467777 8899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 312 (341)
+..+|++++|+.+++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888887754
Q ss_pred H
Q psy16611 313 I 313 (341)
Q Consensus 313 ~ 313 (341)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.62 E-value=2.6e-14 Score=104.39 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLA 264 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~ 264 (341)
.++.+|.+++..|++++|+..|++++...|++ ....+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 35667777777777777877777777777776 112677778888888888888888888888877777 77788888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 304 (341)
.++...|++++|+..|++++...|++..+......+....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 8888888888888888888888887776655555444333
No 176
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=8.3e-14 Score=128.86 Aligned_cols=222 Identities=13% Similarity=0.033 Sum_probs=191.3
Q ss_pred hhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q psy16611 105 GTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSV-KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 183 (341)
-..++...|..+ ..|+..+..+...|+.++|. .+|++++...|.+...|..++......|++++|...|++++...
T Consensus 332 Ye~aL~~~p~~~---~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 332 YMQAAQHVCFAP---EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHTTTCH---HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345566677766 78999999999999999997 99999999999999999999999999999999999999998752
Q ss_pred -----------CC-----------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-ccccchHHHHHHHHHHHHhcC-CH
Q psy16611 184 -----------LY-----------NAELFNNLALCCFYSQQYDMVVTCFERALSL-ALNENAADVWYNISHVAIGIS-DT 239 (341)
Q Consensus 184 -----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~la~~~~~~g-~~ 239 (341)
|. ...+|...+......|..+.|..+|.++++. .+.. ..+|...+.+....+ ++
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--PDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--THHHHHHHHHHHTTTSCC
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHhCCCH
Confidence 42 3457888889888999999999999999988 4444 667777777776665 48
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP---YLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 240 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
+.|...|+.+++..|+++..|...+......|+.+.|...|++++...| .....|..+.......|+.+.+...+++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 3556888899999999999999999999
Q ss_pred HHhcCCCCHHHHHHH
Q psy16611 317 SLDLHPGHSYSWDIL 331 (341)
Q Consensus 317 al~~~p~~~~~~~~l 331 (341)
+.+..|++.......
T Consensus 567 ~~~~~P~~~~~~~f~ 581 (679)
T 4e6h_A 567 FFEKFPEVNKLEEFT 581 (679)
T ss_dssp HHHHSTTCCHHHHHH
T ss_pred HHHhCCCCcHHHHHH
Confidence 999999986654443
No 177
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=2.9e-15 Score=129.52 Aligned_cols=193 Identities=11% Similarity=0.073 Sum_probs=107.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+...+..+...|++++|+.+++.+.+..+ ++.+...++.+|.+.|+++++.++++. | +...|..+|..+..
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~ 134 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYD 134 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC-----C---------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHH
Confidence 3455666677777888888887777776433 356677777888888888887777642 3 33588899999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+
T Consensus 135 ~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 135 EKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp --CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred cCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999865 35788999999999999999999998 4688999999999999999999777
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
... +..+| +-...+..+|.+.|++++|+.++++++.+++.+...+..++.+...+
T Consensus 200 ~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 200 GLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp TTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 765 32444 44556889999999999999999999999999999998887776543
No 178
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.62 E-value=4.7e-14 Score=116.95 Aligned_cols=170 Identities=12% Similarity=-0.035 Sum_probs=144.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY----NAELFNNL 193 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l 193 (341)
...+.+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +..+...+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 4567889999999999999999999999887 78999999999999999999999999999999883 22333344
Q ss_pred --HHHHHHcC--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCHHH
Q psy16611 194 --ALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI----------DSSHGLS 259 (341)
Q Consensus 194 --a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~ 259 (341)
+++.+..| ++.+|..+|+++....|+......+++ +++.+|++++|...++.+++. +|+++.+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 54566666 999999999999988887201334444 899999999999999988876 4889999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 294 (341)
+.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999999998 89999999999999998754
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.61 E-value=7.2e-15 Score=107.27 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-------GLS 259 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 259 (341)
+..++.+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+.+|++++...|.+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3445555555555555555555555555555555 5555555555555555555555555555555444 555
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
++.+|.++...|++++|+..|+++++..| +...+..++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 66666666666666666666666666655 35555555555443
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.61 E-value=4.1e-15 Score=105.48 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccc--cchHHHHH
Q psy16611 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN--ENAADVWY 227 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~ 227 (341)
|++..+++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|. . ..++.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN--KDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--HHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch--HHHHH
Confidence 4444444555555555555555555555555555555555555555555555555555555555555444 4 44555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCC
Q psy16611 228 NISHVAIGI-SDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 228 ~la~~~~~~-g~~~~A~~~~~~al~~~p~ 255 (341)
.+|.++... |++++|++++++++...|.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 555555555 5555555555555544443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.61 E-value=2.6e-15 Score=108.00 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=61.3
Q ss_pred cCChhHHHHHHHHHHhh---ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16611 200 SQQYDMVVTCFERALSL---ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 276 (341)
.|++++|+.+|++++++ +|.+ ..+++++|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 46666777777777776 4665 666777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCchhHH
Q psy16611 277 STYLQAAAASSPYLYETH 294 (341)
Q Consensus 277 ~~~~~~al~~~p~~~~~~ 294 (341)
+..|++++...|+++.+.
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 777777776666665543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.60 E-value=2.1e-14 Score=108.80 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HH
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GL 258 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 258 (341)
++..+|.++...|++++|+.++++++...+.. ....++..+|.++...|++++|+.+++++++..+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 44555555555555555555555555543322 112355556666666666666666666665543221 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAASSPY------LYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++|+.++++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666654321 123566677777777777777777777776543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.60 E-value=1.6e-14 Score=125.06 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=109.3
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
..+..+|..++..|++++|+..|+++++..+... .....++.....|.+..++.++|.+|..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999998643211 1112344455667777788888888888
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (341)
.|++++|+.+++++++++|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887 888888888888888888888888888888888888888888888877777766543
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=1.6e-13 Score=126.91 Aligned_cols=204 Identities=8% Similarity=-0.081 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL-LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 214 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 214 (341)
......|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++......|++++|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hhc-----------ccc---------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCC-
Q psy16611 215 SLA-----------LNE---------NAADVWYNISHVAIGISDTRLAIQCLHLALSI-DSSHGLSQNNLAVLEAREGH- 272 (341)
Q Consensus 215 ~~~-----------~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~- 272 (341)
... |.+ ....+|..++......|+.+.|...|.+|++. .+....+|...+.+....++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 853 320 11557899999988999999999999999988 44556778777777777654
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhh
Q psy16611 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG---HSYSWDILRKLEQYFS 339 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~ 339 (341)
++.|...|+.+++..|+++..|..++......|+.+.|..+|++++...|+ ....|.....+....+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999884 5567777776665544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.59 E-value=6.2e-15 Score=105.95 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16611 236 ISDTRLAIQCLHLALSI---DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312 (341)
Q Consensus 236 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 312 (341)
+|++++|+.+|+++++. +|++..++.++|.++...|++++|+..|+++++++|++..+++++|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666666666 355566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH
Q psy16611 313 IVKKSLDLHPGHSYSWDILRKL 334 (341)
Q Consensus 313 ~~~~al~~~p~~~~~~~~l~~~ 334 (341)
.|++++...|+++........+
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHH
Confidence 6666666666665555444333
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.58 E-value=3.8e-14 Score=107.37 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAA 223 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~ 223 (341)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+.. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 445566666666666666666666666553322 1356677777777777777777777777664432 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
.++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5677777777778888888888777776532 1245677788888888888888888888877644
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.57 E-value=9.3e-15 Score=108.36 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=56.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16611 166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245 (341)
Q Consensus 166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (341)
.+.+++|++.++++++++|+++++|+++|.++...++++.+.... +.+++|+..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eAi~~ 68 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHHHHH
Confidence 344555555666666666666665555555555555443111100 013455555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCch
Q psy16611 246 LHLALSIDSSHGLSQNNLAVLEARE-----------GHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 246 ~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 291 (341)
|+++++++|++..+|+++|.+|..+ |++++|+.+|+++++++|++.
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 6666666665555566666555554 367777777777777777764
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=8.9e-13 Score=127.03 Aligned_cols=172 Identities=9% Similarity=0.005 Sum_probs=115.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHH----------------------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILK----------------------RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~----------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 182 (341)
+|.++...|.+++|..+|+++-. ...+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 58888899999999888887521 01234555666666666666666666666553
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN 262 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 262 (341)
+++..+..++.++...|+|++|+++|..+.+..+. +.+...+|.+|.+++++++ ++.|. ...+...+..
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e---~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQ 1200 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc---ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHH
Confidence 45555566666666666666666666665555433 2222345555555555553 22221 1223456678
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
+|..+...|+|++|+.+|.++ ..|..++.+|.++|++++|++.++++.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 999999999999999999986 478999999999999999999999983
No 189
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.54 E-value=3.1e-14 Score=123.14 Aligned_cols=180 Identities=8% Similarity=0.048 Sum_probs=142.0
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
.+|.++|..+...|.+++|+.+|.++ ..|..+|.++.++|++++|++.|+++ .++.+|..+..++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 48999999999999999999999987 46889999999999999999999999 478999999999999
Q ss_pred cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hCCHHHHH
Q psy16611 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR--EGHIERAS 277 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~ 277 (341)
.|+++.|..+... +..+|+. ...+..+|.+.|++++|+.++++++.+++.+...+..+|.+|.+ .++..+.+
T Consensus 190 ~~ef~lA~~~~l~-L~~~ad~-----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 190 GKEFRLAQMCGLH-IVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHTTTT-TTTCHHH-----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHH-HHhCHhh-----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999887775 3355444 44688899999999999999999999999999999999998855 45777777
Q ss_pred HHHHHHHHhCC-----CchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16611 278 TYLQAAAASSP-----YLYETHYNQAVISNLAGDLQESYNIVKKSL 318 (341)
Q Consensus 278 ~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 318 (341)
+.|...+.+.| .+...|..+..+|...++++.|+...-+..
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 77777777766 677799999999999999999988665543
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.7e-13 Score=117.21 Aligned_cols=169 Identities=10% Similarity=-0.020 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----------------ELFNNLALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
......|..+...|++++|++.|.++++..+... .++..+|.+|...|++++|++++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455677888899999999999999999877542 35889999999999999999999999987
Q ss_pred cccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 217 ALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 217 ~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
.+.. ....+...++.++...|++++|+.++++++... +....++..+|.++...|+|++|+..+++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 6654 113456778889999999999999999998763 233678899999999999999999999999875
Q ss_pred C------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16611 287 S------PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322 (341)
Q Consensus 287 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 322 (341)
. +....++..++.+|...|++++|..++++++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 2 23345899999999999999999999999997743
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.44 E-value=1.2e-12 Score=93.55 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 215 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 215 (341)
++|+..|+++++.+|++..+++.+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcccc
Q psy16611 216 LALNE 220 (341)
Q Consensus 216 ~~~~~ 220 (341)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 77654
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.42 E-value=4.3e-12 Score=90.58 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
+|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555 55555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhCC
Q psy16611 285 ASSP 288 (341)
Q Consensus 285 ~~~p 288 (341)
++.|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.5e-13 Score=97.31 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYN 296 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 296 (341)
...++.+|.++...|++++|+..|+++++.+|.++.+++++|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777776 667777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy16611 297 QAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~ 316 (341)
+|.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777766666554443
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.39 E-value=7.4e-12 Score=85.00 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 302 (341)
...++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++..++.++|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred Hc
Q psy16611 303 LA 304 (341)
Q Consensus 303 ~~ 304 (341)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.9e-13 Score=94.65 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLS 259 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 259 (341)
+...++.+|.++...|++++|+..|++++..+|.+ ..+++++|.++...|++++|+..|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 35567777778888888888888888888887777 7778888888888888888888888888888777 777
Q ss_pred HHHHHHHHHHhCCHHHHHHHHH
Q psy16611 260 QNNLAVLEAREGHIERASTYLQ 281 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~ 281 (341)
++.+|.++...|+++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 7777887777777766655544
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.36 E-value=1.2e-11 Score=83.92 Aligned_cols=83 Identities=27% Similarity=0.466 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 265 (341)
+...++.+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34556666666666666666666666666666666 6666666666666666666666666666666666666666666
Q ss_pred HHHHh
Q psy16611 266 LEARE 270 (341)
Q Consensus 266 ~~~~~ 270 (341)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=6.9e-11 Score=87.21 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHH
Q psy16611 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERAS 277 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 277 (341)
++++|+.+|+++.+..... +. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF----GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555443222 22 555555555555555555555543 345555555555555 45555555
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDL 320 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 320 (341)
.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555544 345555555555555 55555555555555554
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.31 E-value=5.3e-12 Score=87.42 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALSIDSSHGL-SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 305 (341)
+..|.++...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45566667777777777777777777777776 77777777777777777777777777777776666533 4
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q psy16611 306 DLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 306 ~~~~A~~~~~~al~~~p~~ 324 (341)
.+.+++..|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5566666666666666554
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.30 E-value=1.6e-11 Score=85.21 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16611 149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 220 (341)
Q Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 220 (341)
+|+++.+++.+|.+|...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++.|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 566777777777777777777777777777777777777777777777777777777777777777766544
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.30 E-value=2.3e-11 Score=108.55 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=54.6
Q ss_pred HHhcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-----ccc-chHHHHHH
Q psy16611 163 HFYNDQPEVALLFYRRLLQM-----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNE-NAADVWYN 228 (341)
Q Consensus 163 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~-~~~~~~~~ 228 (341)
+..+|++++|+..++++++. .+++ ...+.+||.+|..+|+|++|+.++++++.+. +++ .....+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455555555555555442 2222 2334455555555555555555555554431 111 11344445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSI-----DSSHG---LSQNNLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al 284 (341)
+|.+|..+|++++|+.+|++++++ .|+++ .....++.++..++.+++|...|.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555433 12222 233344444444444444444444443
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.30 E-value=9.7e-11 Score=86.41 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHH
Q psy16611 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAI 243 (341)
Q Consensus 168 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 243 (341)
++++|+.+|+++.+....... +|.+|...+.+++|+.+|+++.+. .+ +.+++++|.+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~--~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NS--GNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CC--HHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344555555555544422222 455555444555555555555443 23 4555555555554 45555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q psy16611 244 QCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAAS 286 (341)
Q Consensus 244 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 286 (341)
.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555543 345555555555555 55555555555555544
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.29 E-value=2.2e-11 Score=108.68 Aligned_cols=133 Identities=12% Similarity=-0.022 Sum_probs=110.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhc-----ccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---H
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLA-----LNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSH---G 257 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~ 257 (341)
..+..+..+|+|++|+..+++++++. +++ .....+.++|.+|..+|+|++|+.++++++++ .|++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34455778999999999999999873 222 23788999999999999999999999999976 2444 5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---THYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
..+++||.+|..+|++++|+.+|++++++ .|+++. ...+++.++..++.+++|...|.++.+..-++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999975 466654 66789999999999999999999987654333
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.28 E-value=2.8e-10 Score=92.17 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFYN---------------------DQPEVALLFYRRLLQMGLYNAELFNNLA 194 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------------------~~~~~A~~~~~~al~~~p~~~~~~~~la 194 (341)
.-.+.+++-.+..+|++.......+..|..- .++..|.++|.++.... ..+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~--------~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA--------LSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH--------HHH
Confidence 3456788888899999977766555544321 12445666666655421 111
Q ss_pred HHHHHcCChhHHHH-----HHHH-HHhhccccchHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHhcCCC--
Q psy16611 195 LCCFYSQQYDMVVT-----CFER-ALSLALNENAADVWYNISHVAIG-----IS------DTRLAIQCLHLALSIDSS-- 255 (341)
Q Consensus 195 ~~~~~~~~~~~A~~-----~~~~-al~~~~~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~-- 255 (341)
.+ .....+.+++. -+.+ .-+.+|++ ++.++..|.+... .| ....|...++++++++|+
T Consensus 121 L~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~ 197 (301)
T 3u64_A 121 LE-TAYPGFTREVFSGDEQRLHKVLSRCTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ 197 (301)
T ss_dssp HH-HHSTTHHHHHTSSCHHHHHHHHTTCCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HH-HhCccHHHHHHhcchhhHHHHHHHcCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc
Confidence 11 11122222222 1222 33346677 7777776666532 13 357899999999999999
Q ss_pred CHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q psy16611 256 HGLSQNNLAVLEARE-----GHIERASTYLQAAAASSPYL-YETHYNQAVISNL-AGDLQESYNIVKKSLDLHPG 323 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~ 323 (341)
+..+|..+|.+|... |+.++|..+|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 677999999999995 99999999999999999975 9999999999988 49999999999999998776
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.28 E-value=1.8e-11 Score=84.97 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
+.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 55555555555555555555555555555555555555555555555555555555555555443
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.24 E-value=1.7e-11 Score=84.80 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhccccchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAAD-VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 269 (341)
+..|.++...|++++|+..|+++++.+|.+ .. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 345566666666666666666666666666 66 66666666666666666666666666666666655532
Q ss_pred hCCHHHHHHHHHHHHHhCCCc
Q psy16611 270 EGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 270 ~g~~~~A~~~~~~al~~~p~~ 290 (341)
+.+.+++..|++++..+|++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 44555666666655555543
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.16 E-value=1.3e-09 Score=92.03 Aligned_cols=155 Identities=10% Similarity=-0.007 Sum_probs=87.5
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc
Q psy16611 144 LILKRDATCMEAI--ACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218 (341)
Q Consensus 144 ~~l~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 218 (341)
++....|.+..+| +..|..+...++ +.+|+.+|+++++++|+++.++..++.+|.....+ .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CC
Confidence 3444456655443 344555554433 46778888888888888877777777776521100 01
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16611 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298 (341)
Q Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 298 (341)
.. ...... ...+... ..++..+|.++.++..++.++...|++++|+..+++++.++|+ ..+|..+|
T Consensus 252 ~~--~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG 317 (372)
T 3ly7_A 252 LD--EKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLG 317 (372)
T ss_dssp CC--HHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred Cc--hhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence 11 000000 0111111 1223445666666666666666667777777777777776653 45556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 299 VISNLAGDLQESYNIVKKSLDLHPGHS 325 (341)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 325 (341)
.++...|++++|+..|++|+.++|..+
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 777777777777777777777766553
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.16 E-value=2.4e-09 Score=90.35 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=90.3
Q ss_pred cCCCCCchhHhhhcHHHHHHHcCC---chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16611 111 SQPDGPFIQVSRLNLAKIFEGLNN---MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA 187 (341)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 187 (341)
..|.++.. -..+..|..+...++ +.+|+.+|+++++.+|+++.++..++.+|.... ...+...
T Consensus 189 ~~p~~~~A-ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------------~~~~~~~ 254 (372)
T 3ly7_A 189 ILPHRGAL-LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------------SQHPLDE 254 (372)
T ss_dssp HSCSSGGG-HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HHSCCCH
T ss_pred cCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------------ccCCCch
Confidence 45666643 333344666665544 578999999999999999999999988887210 0011111
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
..... ...+... ..++...|.+ +.++..++..+...|++++|+..+++++.++|+ ...|..+|.++
T Consensus 255 ~~~~~----------l~~a~~a-~~a~~~~~~~--a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 255 KQLAA----------LNTEIDN-IVTLPELNNL--SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHH----------HHHHHHH-HHTCGGGTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred hhHHH----------HHHHHHH-HHhcccCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 10000 0112221 1223444555 666666666666666666666666666666643 45556666666
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 268 AREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
...|++++|++.|++++.++|...
T Consensus 321 ~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 321 EMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcC
Confidence 666666666666666666666543
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.14 E-value=8.1e-10 Score=80.92 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CchhHHHHHHHHHHHcCCHHHHHHH
Q psy16611 239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERASTYLQAAAASS-P-YLYETHYNQAVISNLAGDLQESYNI 313 (341)
Q Consensus 239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (341)
...+.+.|.+.+..++.+.++.+++|+++.+.+ +.++++..++..++.+ | ++.+.++++|..+.+.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677777777777888888888888888877 6668888888888887 6 4577888899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 314 VKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 314 ~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
++++++++|+|..+......+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999988888877776654
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.09 E-value=2e-09 Score=73.07 Aligned_cols=75 Identities=15% Similarity=-0.031 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 253 DSSHGLSQNNLAVLEAREGH---IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327 (341)
Q Consensus 253 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 327 (341)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..+++.|+|++|+.+|+++++.+|.++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 45666666666666655444 5666666666666666666666666666666666666666666666666664333
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=3.7e-08 Score=88.43 Aligned_cols=190 Identities=13% Similarity=-0.034 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q psy16611 136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 215 (341)
Q Consensus 136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 215 (341)
......|++++...|..+..|+..+..+...|+.++|...|++++.. |.+...+...+... +.++....+.....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999 99877776554431 11121111111110
Q ss_pred ----------hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Q psy16611 216 ----------LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAA 284 (341)
Q Consensus 216 ----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al 284 (341)
..+.. ..+|...+......++.+.|...|+++ ...+....+|...+.+....+ +.+.|...|+.++
T Consensus 271 ~~~~~~~~~~~~~~~--~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 271 MGEAESAEKVFSKEL--DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp ----------CHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hhccchhhhhccccc--HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 11122 567888888888888899999999999 433345667777777666666 6999999999999
Q ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16611 285 ASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337 (341)
Q Consensus 285 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 337 (341)
+..|+++..|..++......|+.+.|...|+++ +.+...|.....+...
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 998988888888888888999999999888887 3455556555555443
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.99 E-value=1.1e-08 Score=71.20 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSID-------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 295 (341)
+.-++.+|..++..|+|..|+.+|+++++.. +....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666665542 223445555555555555555555555555555555555544
Q ss_pred HHH
Q psy16611 296 NQA 298 (341)
Q Consensus 296 ~l~ 298 (341)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 444
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.97 E-value=1e-08 Score=83.10 Aligned_cols=111 Identities=14% Similarity=-0.001 Sum_probs=95.8
Q ss_pred HHcCCCcHHHHHHHHHHHHH---c--C------ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc-----CCHHHHH
Q psy16611 180 LQMGLYNAELFNNLALCCFY---S--Q------QYDMVVTCFERALSLALNENAADVWYNISHVAIGI-----SDTRLAI 243 (341)
Q Consensus 180 l~~~p~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~ 243 (341)
-+.+|++.+.+++.|.+... . | ....|...++++++++|+.....+|..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34678899988888877644 1 3 35689999999999999953377999999999995 9999999
Q ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCc
Q psy16611 244 QCLHLALSIDSSH-GLSQNNLAVLEAR-EGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 244 ~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 290 (341)
.+|+++++++|+. ...++.+|..+.. .|++++|..++++++..+|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999975 9999999999988 599999999999999988764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.97 E-value=6.8e-09 Score=91.13 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCchh---HHHH
Q psy16611 233 AIGISDTRLAIQCLHLALSI-----DSSH---GLSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---THYN 296 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~ 296 (341)
....|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++. .+++
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34578999999999999985 3555 467889999999999999999999999975 355544 7889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q psy16611 297 QAVISNLAGDLQESYNIVKKSLDL-----HPGHSYSWDILRKLE 335 (341)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~ 335 (341)
||.+|..+|++++|+.+|++++++ .|+++........+.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999975 799988777665543
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=2e-08 Score=73.57 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16611 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLA-L-NENAADVWYNISHVAIGISDTRLAIQ 244 (341)
Q Consensus 170 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (341)
..+.+.|.+.+..++.+.++.+++|+++...+ ++++++..++.+++.+ | .. .+.++++|..+++.|+|++|++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~--rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH--HHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch--HHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555555556666666666666655 4446666666666655 4 33 5566666666666666666666
Q ss_pred HHHHHHhcCCCCHHHHH
Q psy16611 245 CLHLALSIDSSHGLSQN 261 (341)
Q Consensus 245 ~~~~al~~~p~~~~~~~ 261 (341)
+++++++++|++..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 66666666666555443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.94 E-value=1.2e-08 Score=89.75 Aligned_cols=109 Identities=11% Similarity=-0.012 Sum_probs=89.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCchh---
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSID-----SSH---GLSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE--- 292 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--- 292 (341)
...-+..+|+|++|+..+++++++. |++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3444567899999999999999763 444 567899999999999999999999999975 345544
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDL-----HPGHSYSWDILRKLEQY 337 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~ 337 (341)
.+++||.+|..+|++++|+.+|++++++ .|+++.....+..+...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7889999999999999999999999965 78998877665555443
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.92 E-value=3.1e-08 Score=67.10 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccc
Q psy16611 150 ATCMEAIACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219 (341)
Q Consensus 150 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 219 (341)
|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455555555555543333 455555555555555555555555555555555555555555555555444
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=9.3e-08 Score=85.85 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=152.3
Q ss_pred hhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q psy16611 106 TASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ---- 181 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 181 (341)
..++...|..+ ..|+..+..+...|+.++|...|++++.. |.+...+...+... ..+ +....+.....
T Consensus 203 e~al~~~p~~~---~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 203 NYILDSFYYAE---EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHTTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----
T ss_pred HHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhcc
Confidence 34455566665 77999999999999999999999999999 99877776555442 111 11111111110
Q ss_pred ------cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy16611 182 ------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDS 254 (341)
Q Consensus 182 ------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 254 (341)
..+....+|...+......++.+.|..+|.++ ...+.. ..+|...+.+....+ +.+.|...|+.+++..|
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~--~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVG--PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCC--HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 01123456888888888889999999999999 433334 667777777666555 69999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
+.+..|...+......|+.+.|...|+++ +.....|......-...|+.+.+...+++++.
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99998888888889999999999999997 34677888888888889999999999999885
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.86 E-value=8.1e-07 Score=79.79 Aligned_cols=157 Identities=7% Similarity=0.015 Sum_probs=89.8
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCC-CcHHHHHHHHH
Q psy16611 127 KIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQ---------PEVALLFYRRLLQMGL-YNAELFNNLAL 195 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~---------~~~A~~~~~~al~~~p-~~~~~~~~la~ 195 (341)
..+.+.|++++|+++|+++.+..- -+...|..+-.++...+. .++|.++|++.....- -+...|..+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 455566777777777776665421 144555555555543332 4566666666555421 24555666666
Q ss_pred HHHHcCChhHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCH
Q psy16611 196 CCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHI 273 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 273 (341)
.|...|++++|..+|++..+..- -+ ...|..+...|.+.|++++|.++|+++.+.. .-+..+|..+...+.+.|+.
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 66666666666666666554321 12 4556666666666666666666666665543 22345566666666666666
Q ss_pred HHHHHHHHHHHH
Q psy16611 274 ERASTYLQAAAA 285 (341)
Q Consensus 274 ~~A~~~~~~al~ 285 (341)
++|...+++..+
T Consensus 192 d~A~~ll~~Mr~ 203 (501)
T 4g26_A 192 DKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.85 E-value=5.3e-08 Score=67.69 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccc-----cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALN-----ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN 262 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 262 (341)
.-++.+|..++..++|..|+..|+++++..+. .....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 34455566666666666666666655554311 0124555556666666666666666666666666655555555
Q ss_pred HH
Q psy16611 263 LA 264 (341)
Q Consensus 263 l~ 264 (341)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.84 E-value=4.4e-08 Score=86.00 Aligned_cols=87 Identities=11% Similarity=-0.034 Sum_probs=53.7
Q ss_pred cCChhHHHHHHHHHHhh-----cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHH
Q psy16611 200 SQQYDMVVTCFERALSL-----ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSH---GLSQNNLAV 265 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~-----~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~ 265 (341)
.|+|++|+..|++++++ .|++ .....+.++|.+|..+|+|++|+.++++++++ .|++ ...++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666666664 2222 22556666677777777777777777766654 2333 445666777
Q ss_pred HHHHhCCHHHHHHHHHHHHHh
Q psy16611 266 LEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 266 ~~~~~g~~~~A~~~~~~al~~ 286 (341)
+|..+|++++|+.+|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 777777777777777777654
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.84 E-value=2.6e-08 Score=87.58 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=47.1
Q ss_pred HcCChhHHHHHHHHHHhh-----cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHH
Q psy16611 199 YSQQYDMVVTCFERALSL-----ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSH---GLSQNNLA 264 (341)
Q Consensus 199 ~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~ 264 (341)
.+|+|++|+..+++++++ .|++ .....+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555555543 1122 22455556666666666666666666665543 1222 33455666
Q ss_pred HHHHHhCCHHHHHHHHHHHHH
Q psy16611 265 VLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~ 285 (341)
.+|..+|++++|+.+|+++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.81 E-value=2.4e-06 Score=76.75 Aligned_cols=169 Identities=13% Similarity=0.059 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcC---------ChhHHHHHHHHHHhhccc-cchH
Q psy16611 155 AIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQ---------QYDMVVTCFERALSLALN-ENAA 223 (341)
Q Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~~~-~~~~ 223 (341)
.+..+-..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+ ..++|.++|++.....-. + .
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd--~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN--E 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC--H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC--H
Confidence 35556678889999999999999998753 235566766666665544 368899999998765322 3 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHH
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYETHYNQAVIS 301 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 301 (341)
..|..+...|.+.|++++|.++|+++.+.. .-+..+|..+...|.+.|+.++|.+.|++..+.. .-+...|..+..+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 889999999999999999999999998764 3467889999999999999999999999998753 22566889999999
Q ss_pred HHcCCHHHHHHHHHHHHhc--CCCCH
Q psy16611 302 NLAGDLQESYNIVKKSLDL--HPGHS 325 (341)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~--~p~~~ 325 (341)
.+.|+.++|..++++..+. .|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999998764 45543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.66 E-value=4.3e-07 Score=64.02 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhC-C-CchhHHHHHHHHHHHcCCHHHHHHH
Q psy16611 239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER---ASTYLQAAAASS-P-YLYETHYNQAVISNLAGDLQESYNI 313 (341)
Q Consensus 239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (341)
...+...|.+.+..++....+.+++|+++.+..+..+ ++.+++..+..+ | ...+.++.||..+++.|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555666666666667777777777776665555 777777766655 3 3445777788888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16611 314 VKKSLDLHPGHSYSWDILRKLEQYF 338 (341)
Q Consensus 314 ~~~al~~~p~~~~~~~~l~~~~~~~ 338 (341)
++..++..|+|..+..+...+....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888877777776666543
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.47 E-value=4.9e-06 Score=58.64 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH---HHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16611 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM---VVTCFERALSLA-L-NENAADVWYNISHVAIGISDTRLAIQC 245 (341)
Q Consensus 171 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (341)
.+...|.+....++...++.+++|+++....+... ++.+++..+... | .. .+.++.+|..+++.|+|++|+.+
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~--Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444444444555555555555555444433 555555555543 2 22 44555555555555555555555
Q ss_pred HHHHHhcCCCCHHHH
Q psy16611 246 LHLALSIDSSHGLSQ 260 (341)
Q Consensus 246 ~~~al~~~p~~~~~~ 260 (341)
++.+|+..|++..+.
T Consensus 97 ~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHHhCCCCHHHH
Confidence 555555555554443
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.35 E-value=2.5e-05 Score=56.28 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCh------hHHHHHHHHHHhhcccc------chHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16611 183 GLYNAELFNNLALCCFYSQQY------DMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLAL 250 (341)
Q Consensus 183 ~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (341)
.|++++.|..........|+. ++-++.|++++..-|.. .....|...+.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344555555444444444444 44445555554443332 112333333322 23345555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 251 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 251 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
......+.+|...|....++|+...|.+.+.+++.+.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 444444555555555555555555555555555555544
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.31 E-value=1.7e-05 Score=57.09 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=94.5
Q ss_pred hccccchHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16611 216 LALNENAADVWYNISHVAIGISDT------RLAIQCLHLALSIDSSH--------GLSQNNLAVLEAREGHIERASTYLQ 281 (341)
Q Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (341)
+.|.+ ++.|........+.|+. ++-++.|++++..-|.. ...|...+.. ...++.++|...|+
T Consensus 8 ~~p~~--yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 8 MMANN--PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp --CCS--HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eCCCC--HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 46788 99999999999988998 89999999999877653 4466667755 56699999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 282 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
.++.++.....+|...|....++|+...|.+.+.+++.+.|...+..
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 99999888888999999999999999999999999999999876644
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.13 E-value=0.00017 Score=51.61 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16611 254 SSHGLSQNNLAVLEAREGHI---ERASTYLQAAAASSPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD 329 (341)
Q Consensus 254 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 329 (341)
.-...+.+++++++.+..+. .+++..++..+...|. ..+.++.+|..++++|+|++|..+.+..++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44567778888888776654 4678888888887774 4567888888888888888888888888888888888887
Q ss_pred HHHHHHHHh
Q psy16611 330 ILRKLEQYF 338 (341)
Q Consensus 330 ~l~~~~~~~ 338 (341)
+...+....
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766544
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.11 E-value=8.6e-05 Score=52.43 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 256 HGLSQNNLAVLEAREGHI---ERASTYLQAAAASSPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331 (341)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 331 (341)
.+.+.+++|+++.+..+. .+++..++..+..+|. ..+.++.+|..+.+.|+|++|..+.+..++..|+|..+..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456777777777666543 4577777777777663 355777788888888888888888888888888887777777
Q ss_pred HHHHHHh
Q psy16611 332 RKLEQYF 338 (341)
Q Consensus 332 ~~~~~~~ 338 (341)
..+....
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.02 E-value=6.1e-05 Score=55.52 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
++..+|.+++..++|..|...|++++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.00 E-value=4.9e-05 Score=56.00 Aligned_cols=131 Identities=14% Similarity=0.033 Sum_probs=79.0
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATC---------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG---LYNAEL 189 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 189 (341)
.+.-...++..|.|+.|+.....++....++ .+++..+|..++..++|..|...|+++++.. +.....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4444567788999999999888876653222 3477889999999999999999999987642 222211
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 267 (341)
...++. ...+. ..... +.+ .++.+.++.||.+.+++++|+..++..- .....+.+...||..|
T Consensus 103 ~~~~~~----~ss~p-------~s~~~-~~e--~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN----SASTP-------QSQCL-PSE--IEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------CC-CCH--HHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred cccccc----cCCCc-------ccccc-cch--HHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 101110 00000 01111 223 6777888888888888888888766532 2234466666666554
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.80 E-value=0.0016 Score=46.67 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 186 NAELFNNLALCCFYSQQY---DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ 260 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 260 (341)
...+.+++|+++....+. .+++.+++..+...|.. ..+.++.+|..++++|+|++|..+.+..|+..|++..+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 444555555555544332 24555555555444421 144555555555555555555555555555555554433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.77 E-value=0.00078 Score=47.59 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCh---hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16611 187 AELFNNLALCCFYSQQY---DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS 259 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 259 (341)
+.+.+++|+++.+..+. .+++.+++..++..|.. ..+.++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34444444444443322 23444444444443311 13444444444444444444444444444444444433
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.001 Score=61.91 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHH--Hhc-CCHHHHHHHHHHHHhc--------CCCC----------HHHHH
Q psy16611 203 YDMVVTCFERALSLALNENAADVWYNISHVA--IGI-SDTRLAIQCLHLALSI--------DSSH----------GLSQN 261 (341)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~~~ 261 (341)
++.|+..+++....+|.. . .++..+.+. ... .+--+|+..+.+.++. .+.+ ...+.
T Consensus 265 ~~~a~~~le~L~~~~p~~--~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~ 341 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIH--D-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN 341 (754)
T ss_dssp HHHHHHHHHHHHHHCGGG--H-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCch--h-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence 466777777777766654 2 222222221 111 2233555555555531 1121 23455
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 317 (341)
.-+..+...|+++-|+.+-++++...|.....|+.|+.+|..+|+++.|+-.+.-+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 55666777788888888888888888888888888888888888888877665443
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.39 E-value=0.011 Score=50.84 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=114.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcHH-----
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA-----IACIGVNHFY-NDQPEVALLFYRRLLQMGLYNAE----- 188 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-----~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~----- 188 (341)
.+.+.+|..|...|++++-..++.......+.-+.+ ...+-..+.. -+..+.-++....+++...+.-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999888887765443332222 2233333333 24455556666666654322211
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHHhhccc----cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----
Q psy16611 189 -LFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLAIQCLHLALSID---SSH---- 256 (341)
Q Consensus 189 -~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~---- 256 (341)
.-..+|..|+..|+|.+|...+.+..+.-.. ....+++.....+|...+++.++...|.++.... +.+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2337899999999999999888888775322 1446778888889999999999999998887543 122
Q ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHh
Q psy16611 257 GLSQNNLAVLEA-REGHIERASTYLQAAAAS 286 (341)
Q Consensus 257 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~ 286 (341)
+.....-|.++. ..++|..|...|-++++.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 334556677788 799999999999888754
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.38 E-value=0.025 Score=53.76 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=89.2
Q ss_pred HHHHcCCchHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16611 128 IFEGLNNMPMSVK-YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 206 (341)
Q Consensus 128 ~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 206 (341)
.....+++++|.. ++.. -+ +...+..+...+...|.+++|++..+ ++...+ ......|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHH
Confidence 3445788888766 4411 11 02223556666677788887776553 222222 234567888888
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16611 207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSHGLSQNNLAVLEAREGHIERAST 278 (341)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~ 278 (341)
.+..+.. ++ ...|..+|..+.+.++++.|+.+|.++-.. ...+...+..++......|++..|..
T Consensus 672 ~~~~~~~-----~~--~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 672 RDLLTDE-----SA--EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFN 744 (814)
T ss_dssp HHHHTTC-----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhh-----Cc--HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence 7775432 44 678888888888888888888888875221 13334444455555555566655555
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16611 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVK 315 (341)
Q Consensus 279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (341)
.|.+. .+ ......+|.+.+++++|+..-+
T Consensus 745 ~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 745 AYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHc-----CC---HHHHHHHHHHcCChHHHHHHHH
Confidence 54332 01 1223344555666666655444
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0046 Score=57.63 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=79.9
Q ss_pred cCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--H-cCChhHHHHHHHHHHhh--------cccc--------chHHH
Q psy16611 166 NDQ-PEVALLFYRRLLQMGLYNAELFNNLALCCF--Y-SQQYDMVVTCFERALSL--------ALNE--------NAADV 225 (341)
Q Consensus 166 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~~~~~~A~~~~~~al~~--------~~~~--------~~~~~ 225 (341)
.++ ++.|+.++++....+|.....+ ..+.+.. . ..+--+|+..+.+.++. .+.+ .....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 5778888888888888654332 2222221 1 12334566666666532 1111 00335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
+..-+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5556777788899999999999999999999999999999999999999998777655
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.30 E-value=0.025 Score=48.61 Aligned_cols=168 Identities=8% Similarity=-0.042 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHH-cCChhHHHHHHHHHHhhccccc----hH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFY-SQQYDMVVTCFERALSLALNEN----AA 223 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~----~~ 223 (341)
.+.+.+|..|...|+.++-.+++......-+.-+ .....+-..+.. .+..+.-++.+..+++...... ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999998888887654433222 222233333332 3455666667777766543331 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCchh--
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSS--H----GLSQNNLAVLEAREGHIERASTYLQAAAASS---PYLYE-- 292 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~-- 292 (341)
.+-..+|..|+..|+|.+|.+.+.+.++.... + .+++..-..+|...+++.++...+.++.... +.++.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 23447899999999999999999988874322 1 4567777888999999999999999997653 12232
Q ss_pred --HHHHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q psy16611 293 --THYNQAVISN-LAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 293 --~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 321 (341)
....-|..+. ..++|.+|..+|-+++.-.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 4456678888 8999999999999987543
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.12 E-value=0.045 Score=40.34 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--c--------------
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL--A-------------- 217 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~-------------- 217 (341)
+....++..++..|++..++-.+.. -+.....+.-+.||...++|..|+.+++..+.- +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 3444455555555555555544331 233444445555555556666666655555521 1
Q ss_pred -cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------HHHH------HhCCHHHHH--
Q psy16611 218 -LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA-----------VLEA------REGHIERAS-- 277 (341)
Q Consensus 218 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----------~~~~------~~g~~~~A~-- 277 (341)
|.+ ....+..+|.++.+.|+-++|+.++.......|-.+.+-+.+- .+.. +...+....
T Consensus 109 d~~D-kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~l 187 (242)
T 3kae_A 109 DPGD-EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEF 187 (242)
T ss_dssp CTTC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHH
T ss_pred ccch-HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHH
Confidence 111 1223445666666666666666666666555443221110000 0000 000000111
Q ss_pred ------HHHHHHHHhCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 278 ------TYLQAAAASSPYLYE-THYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 278 ------~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
...++..+.-|.... .....+..|+..|-.++...+|...-..+|..
T Consensus 188 He~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 188 HESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 223333334454443 33456778899999999999999999988864
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.98 E-value=0.042 Score=44.03 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=44.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16611 163 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 220 (341)
Q Consensus 163 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 220 (341)
..+.|++++|+......++.+|.+......+..+++-.|+|+.|.+.++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4456777777777777777777777777777777777777777777777777777776
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.06 Score=51.12 Aligned_cols=155 Identities=12% Similarity=0.018 Sum_probs=87.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 204 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 204 (341)
+...+...|..++|+...+ ++...+. .....|++++|.+..+ ..++...|..+|..+...++++
T Consensus 635 ~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHH
Confidence 3345556666666655432 2332233 3456799999988854 3467889999999999999999
Q ss_pred HHHHHHHHHHhhc--------cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16611 205 MVVTCFERALSLA--------LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 276 (341)
Q Consensus 205 ~A~~~~~~al~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 276 (341)
.|+.+|.++-... ..+ .+.+..++......|++..|...|.+.= +. .....+|.+.+++++|
T Consensus 699 ~A~~~y~~~~d~~~l~~l~~~~~~--~~~~~~~~~~a~~~~~~~~A~~~~~~~g-----~~---~~a~~~~~~~~~~~~A 768 (814)
T 3mkq_A 699 LAIEAFTNAHDLESLFLLHSSFNN--KEGLVTLAKDAETTGKFNLAFNAYWIAG-----DI---QGAKDLLIKSQRFSEA 768 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHT-----CH---HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHccChhhhHHHHHHcCC--HHHHHHHHHHHHHcCchHHHHHHHHHcC-----CH---HHHHHHHHHcCChHHH
Confidence 9999999873321 112 3334455555555555555554443320 00 1112344555555555
Q ss_pred HHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHH
Q psy16611 277 STYLQAAAASSPYL---YETHYNQAVISNLAGDLQ 308 (341)
Q Consensus 277 ~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~ 308 (341)
+..-++ ..|.. ..+....+.-+...|+.+
T Consensus 769 ~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 769 AFLGST---YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence 554433 23332 134445555555566543
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.023 Score=42.58 Aligned_cols=102 Identities=8% Similarity=0.039 Sum_probs=58.9
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 128 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
...+.|+++.|.++.+.. ++...|..+|......|+++-|+.+|+++-. +..+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 445677777777776654 4566777777777777777777777776532 123344555556655444
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16611 208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (341)
..-+.+.... + +.....+++.+|+++++++.|.+.
T Consensus 81 kla~iA~~~g--~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE--D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT--C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc--c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3333332221 1 122233455667777777666553
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.83 E-value=0.035 Score=47.90 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=66.4
Q ss_pred HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16611 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA-IQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 275 (341)
....|+.+.|...+++++.+.......... ...|-.+ ...+++.. ..+...++..+...|++.+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHH
Confidence 334578888888888888885443101000 0111111 11111111 1234455667777788888
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
++..+.+++..+|-+...|..+..++...|+..+|+..|+++..
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887777888888888888888888777776643
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.81 E-value=0.031 Score=44.80 Aligned_cols=121 Identities=4% Similarity=-0.194 Sum_probs=82.6
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 128 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
..++.|++++++..+...++.+|.+......+...+.-.|++++|.+-++.+.+++|.....-..+-.. -.|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHH
Confidence 456789999999999999999999999999999999999999999999999999999875432221111 1111
Q ss_pred HHHHHHHhh--cccc-c---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 208 TCFERALSL--ALNE-N---AADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 208 ~~~~~al~~--~~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
..=.+.+.- .|.. . .......-+......|+.++|...-.++++..|.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111112211 1111 0 0222333344555678888888888888777654
No 244
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.69 E-value=0.037 Score=53.08 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHH
Q psy16611 186 NAELFNNLALCCFYSQQYDMVVTCFERALSL-----ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLS 259 (341)
Q Consensus 186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 259 (341)
....+..+-..|.+.|+.++|..+|.+..+. .|+ ...|+.+...|.+.|++++|.++|+++.+.. .-+..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3456888899999999999999999876532 333 7889999999999999999999999998754 345778
Q ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHhC
Q psy16611 260 QNNLAVLEAREGH-IERASTYLQAAAASS 287 (341)
Q Consensus 260 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 287 (341)
|..+..++.+.|+ .++|...|++..+..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888999887 478889999988754
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.3 Score=42.94 Aligned_cols=97 Identities=13% Similarity=-0.034 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCCCch--
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSID--SS----HGLSQNNLAVLEAREGHIERASTYLQAAAA---SSPYLY-- 291 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~-- 291 (341)
......++.++...|++.+|...+.....-. .. -.+++.....+|...+++.+|...++++.. ..+..+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 4445666777777777777776666654221 11 134555566666667777777766666532 112222
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 292 --ETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 292 --~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
..+...|.++...++|.+|..+|..++.
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2444566666666777777666666654
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.015 Score=50.94 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMG---LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVW 226 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~ 226 (341)
.++..+|..|...|++++|.+.|.++.... ..-.+.+..+..++...+++..+...+.++....... ......
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 345556666666666666666666655432 1223455555555555666666666666554432111 112233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 227 YNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
...|.++...++|.+|...|-+++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33444555555666665555555443
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.56 E-value=0.02 Score=50.87 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
.+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+.+|-+++......+.+..++...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4455566665556666666666666666666666666666666666666666666666665544455555555555443
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.15 Score=38.14 Aligned_cols=110 Identities=8% Similarity=0.038 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH
Q psy16611 151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230 (341)
Q Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 230 (341)
.+++..+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|.++-.. -.+.
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------~~L~ 67 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------DKLS 67 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------HHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------HHHH
Confidence 3555566555 4669999998887765 67888999999999999999999999886322 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
.+|.-.|+.+.-.+..+.+..... +.....++..+|+++++++.|.+.
T Consensus 68 ~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 68 FLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 445556776665555555443321 122234567889999999888654
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.47 E-value=0.091 Score=50.50 Aligned_cols=98 Identities=9% Similarity=0.001 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--cccchHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENAADVW 226 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~ 226 (341)
...+..+...|.+.|+.++|..+|.+..+. ..-+...|+.+-..|.+.|++++|.++|++..+.. |+ ...|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vvTY 203 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HHHH
Confidence 345778999999999999999999876543 34477889999999999999999999999997754 43 7888
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q psy16611 227 YNISHVAIGISD-TRLAIQCLHLALSID 253 (341)
Q Consensus 227 ~~la~~~~~~g~-~~~A~~~~~~al~~~ 253 (341)
..+..++.+.|+ .++|.++|+++.+..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888889999988 578999999998765
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.037 Score=49.19 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 336 (341)
..+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+.+|-+++....-++.++..+..+-.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999887778888877766644
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.40 E-value=0.06 Score=46.44 Aligned_cols=111 Identities=11% Similarity=-0.112 Sum_probs=77.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH-HHHHHHHHhhccccchHHHHHHHHHHHHhcCC
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV-VTCFERALSLALNENAADVWYNISHVAIGISD 238 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 238 (341)
|......|+.+.|...+.+++.+.....-. .+. ...|-.+ ...+++ .. ..+...++..+...|+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~-----~~~--~~~w~~~~r~~l~~------~~--~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLD-----DLR--DFQFVEPFATALVE------DK--VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----GGT--TSTTHHHHHHHHHH------HH--HHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCC-----CCC--chhHHHHHHHHHHH------HH--HHHHHHHHHHHHHCCC
Confidence 333345688899999999998875332110 000 0122211 111111 11 4566677888889999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
+.+++..+..++..+|-+..++..+..++...|+..+|+..|+++-.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.17 Score=44.82 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=89.2
Q ss_pred HHHHHcCCchHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHhcCChHHHH----------HHHHHHHH----
Q psy16611 127 KIFEGLNNMPMSVKYYKLILK-----------RDATCMEAIACIGVNHFYNDQPEVAL----------LFYRRLLQ---- 181 (341)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~---- 181 (341)
..++..+++++|..+....+. .+.-.+.+|+..+.++...|+..... ..+..++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 445678889988887765541 12334667888888887777665422 22222222
Q ss_pred -cCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16611 182 -MGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254 (341)
Q Consensus 182 -~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 254 (341)
.++. ...+++.+-..|...+.|++|..+..++. .|.. .....++.+|.++.-+++|.+|.+++..|++..|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2222 35578888899999999999999999985 3322 3356788899999999999999999999999887
Q ss_pred CCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHH---HHHHHHHHHHhcC
Q psy16611 255 SHG-------LSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQAVISNLAGDLQ---ESYNIVKKSLDLH 321 (341)
Q Consensus 255 ~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~ 321 (341)
.+. .++..+..+-.-+|+..+-. .| ..+.. ...|..++.++ +.|+.. .++.-++..+..+
T Consensus 302 ~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf-----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~D 374 (523)
T 4b4t_S 302 HNSKSLGFLQQSNKLHCCIQLLMGDIPELS-FF-----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKD 374 (523)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HH-----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHT
T ss_pred cchhhhhHHHHHHHHHHhHHhhcCCCCChH-Hh-----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccC
Confidence 652 23333344444467754311 11 11221 12356666665 456654 4444555555555
Q ss_pred CCCHH
Q psy16611 322 PGHSY 326 (341)
Q Consensus 322 p~~~~ 326 (341)
-+..-
T Consensus 375 gty~L 379 (523)
T 4b4t_S 375 DTYQL 379 (523)
T ss_dssp TCTHH
T ss_pred ChhHH
Confidence 54433
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.04 E-value=0.88 Score=41.69 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=81.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 271 (341)
+.......+.+.|...+.+......-+ .....+..++.-+...+...++...+.+......++...-. ++....+.|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHH-HHHHHHHCC
Confidence 444444567788888887765432222 11233444454455555456777777776654444333333 334455779
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
+++.|..+|++.-..........+.+|.++...|+.++|..+|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999876443334566789999999999999999999999875
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.02 E-value=0.42 Score=47.48 Aligned_cols=144 Identities=8% Similarity=-0.037 Sum_probs=100.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------------
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---------------------- 182 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------- 182 (341)
+...+...+.++-+.+ .+...+.++...+.+|.++...|++++|..+|+++..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3445666777766654 34566778888899999999999999999999886321
Q ss_pred -CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 183 -GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL 258 (341)
Q Consensus 183 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 258 (341)
....+..|..+..++...+.++.+++..+.|++..+.+ .....|.++-..+...|+|++|...+...=.. .....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHH
Confidence 11123456777888889999999999999999876433 12347888888899999999998877544221 22234
Q ss_pred HHHHHHHHHHHhCCH
Q psy16611 259 SQNNLAVLEAREGHI 273 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~ 273 (341)
.+..+.....+.|+.
T Consensus 973 cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCCCh
Confidence 444454444444443
No 255
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.91 E-value=0.34 Score=35.79 Aligned_cols=163 Identities=10% Similarity=-0.025 Sum_probs=110.7
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----------------- 182 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------- 182 (341)
.-.+.++.+++-.|+|.+++-++.. -+...+.+..+.||...+++..|+..++..+.-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 4466778899999999999877654 345778889999999999999999999999842
Q ss_pred CCCcHH-HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH-----------HHHh-cCC-----HHHHH-
Q psy16611 183 GLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH-----------VAIG-ISD-----TRLAI- 243 (341)
Q Consensus 183 ~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~-----------~~~~-~g~-----~~~A~- 243 (341)
+|.+.+ .+..+|.++...|+.++|+.++.......|-. ..+-+.+-. +... ... +....
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf--~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~ 186 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF--SPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIE 186 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--HHHHHHHHTTCCCCCC-----------CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc--chHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHH
Confidence 233333 35678999999999999999999998876554 222111100 0000 000 01111
Q ss_pred -------HHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 244 -------QCLHLALSIDSSHGL-SQNNLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 244 -------~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
...++-.+.-|.... ...+.+.-|+.+|-.++...+|...-..+|.
T Consensus 187 lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 187 FHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 122223333354433 3345677889999999999999999888885
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.061 Score=47.08 Aligned_cols=100 Identities=9% Similarity=0.075 Sum_probs=66.1
Q ss_pred hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcH----H
Q psy16611 118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDA---TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNA----E 188 (341)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~----~ 188 (341)
+..+...+|..|...|++++|.+.|.++..... .-.+.+.....++...+++..+..++.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 335667778888888888888888887765432 235666777777777788888888887775431 1121 2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16611 189 LFNNLALCCFYSQQYDMVVTCFERALSLA 217 (341)
Q Consensus 189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 217 (341)
.....|.++...++|.+|...|..++.-.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 33445666667778888877777766543
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.034 Score=49.14 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHhcCChHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHcCChhHHHH----------HHHHHHhh----c
Q psy16611 163 HFYNDQPEVALLFYRRLLQ-----------MGLYNAELFNNLALCCFYSQQYDMVVT----------CFERALSL----A 217 (341)
Q Consensus 163 ~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~----------~~~~al~~----~ 217 (341)
+...+++++|.++-...+. +++-.+.+|+.++.++...|+...... .+-.++.. .
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3455667776666554431 122334456666666655555543211 11111111 1
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16611 218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290 (341)
Q Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 290 (341)
.......+++.+-..|...+.++.|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 111234555666666666666666666666653 2221 2344556666666666666666666666655544
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.63 E-value=0.37 Score=47.84 Aligned_cols=146 Identities=13% Similarity=0.051 Sum_probs=101.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--------------------
Q psy16611 158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-------------------- 217 (341)
Q Consensus 158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------- 217 (341)
.+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.--
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44455566677765543 445677788888999999999999999999998873210
Q ss_pred cc-cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16611 218 LN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-G----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291 (341)
Q Consensus 218 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 291 (341)
+. ......|..+..++.+.+.++.++++.+.|++..+.+ . ..|.++=..+...|+|++|...+...-.. ..-.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 00 0123566778888899999999999999999876433 2 25677777888999999998887554221 1223
Q ss_pred hHHHHHHHHHHHcCCHH
Q psy16611 292 ETHYNQAVISNLAGDLQ 308 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~ 308 (341)
+.+..|...+++.|+.+
T Consensus 972 ~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhCCChh
Confidence 45555655566555543
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=2.1 Score=37.57 Aligned_cols=165 Identities=10% Similarity=-0.024 Sum_probs=102.8
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHH---HH-hcCChHHHHHHHHHHHHc----CC-------
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN---HF-YNDQPEVALLFYRRLLQM----GL------- 184 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~---~~-~~~~~~~A~~~~~~al~~----~p------- 184 (341)
.....+..++...|+++...+.+.-..+.......+...+... +. .....+.. .....+.. ..
T Consensus 57 r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~ 134 (445)
T 4b4t_P 57 EVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLN--TRISVIETIRVVTENKIFVEV 134 (445)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHhccchHHHH
Confidence 3344455677888888887776655544433333322222211 11 11222211 11122211 01
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc----cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC-
Q psy16611 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLA----LNENAADVWYNISHVAIGISDTRLAIQCLHLALS---IDSSH- 256 (341)
Q Consensus 185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~- 256 (341)
........|+.+|...|++.+|...+.....-. ......+++.....++...+++.+|...++++.. ..+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 134556788999999999999999988875421 1114467888889999999999999999988742 12222
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 257 ---GLSQNNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 257 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
...+...|.++...++|.+|-.+|..++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345677888889999999999999888753
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.02 E-value=3.6 Score=37.70 Aligned_cols=187 Identities=7% Similarity=-0.110 Sum_probs=122.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16611 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEA----IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200 (341)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 200 (341)
++.......+.+.|...+........-+... +..++......+...++...+.+......++.. ....+...+..
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence 3444455568888999988876543333222 223343444445466777788876655444433 44444455677
Q ss_pred CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------------C---C----C
Q psy16611 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-----------------S---S----H 256 (341)
Q Consensus 201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------p---~----~ 256 (341)
|+++.|..+|+++-...... ....+.+|.++...|+.++|..+|+++.... + . .
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~--~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~ 376 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred CCHHHHHHHHHHcccccccc--HhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence 99999999998876544445 7889999999999999999999999876421 0 0 0
Q ss_pred H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16611 257 G----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316 (341)
Q Consensus 257 ~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (341)
. ..-...+..+...|....|...+...+... +..-...++.+....|.+..++....+
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0 012344566778888888888888776542 234455677777888888877755543
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.51 E-value=1.8 Score=41.48 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=109.6
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM--EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 197 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 197 (341)
.+-+.+|.++...++ +++.+.+..++..+.... .+-+.+|.++.-.|+.+....++..+.+...+...-...+|..+
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 455567777765554 467777777776443211 34457788888888887777777766664443333334455555
Q ss_pred HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16611 198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 277 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 277 (341)
...|+.+.+-...+.............+-+.+|..|...|+...-...+..+.....++..-...+|......|+.+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 67788877776666655432111223445667888899999765555777766543333332333344444456554444
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHc--CC-HHHHHHHHHHHH
Q psy16611 278 TYLQAAAASSPYLYETHYNQAVISNLA--GD-LQESYNIVKKSL 318 (341)
Q Consensus 278 ~~~~~al~~~p~~~~~~~~l~~~~~~~--g~-~~~A~~~~~~al 318 (341)
..+....+ ..++.+.+..+.++... |+ ..+++..+.+..
T Consensus 615 rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 44433222 23445555444443332 22 256676666654
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.67 E-value=6.3 Score=32.52 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=15.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q psy16611 299 VISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~ 319 (341)
..|...|+...|...|....+
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 346678999999888877653
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.34 E-value=12 Score=36.08 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=49.3
Q ss_pred cCCchHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cH----HHHHHHHHH
Q psy16611 132 LNNMPMSVKYYKLILKRD-ATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NA----ELFNNLALC 196 (341)
Q Consensus 132 ~g~~~~A~~~~~~~l~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~----~~~~~la~~ 196 (341)
.|+.++++..+.+.+... .++ .-+.+.+|.++...+ ++++.++...+..... .. .+-..||.+
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 455555555555544321 111 223444444444333 3455555555543220 01 122344444
Q ss_pred HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
+...++ +++.+.+...+..+.......+-+.+|.++...|+-+.....+..+.+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 443333 344444444443221110113344555566666655544444444443
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.82 E-value=5 Score=30.60 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
.+|...+..+ ..+...++.++|.-+....-....+..|...|..+...|++.+|.+.|+.+++..
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444443 1233456666666665544333336666666777777777777777777776654
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.97 E-value=15 Score=35.76 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16611 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 214 (341)
Q Consensus 159 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 214 (341)
+...+...|.++-+ .+.+...|.++..-+.+|.+|...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44444555655543 33445566666666777777777777777777777653
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.06 E-value=24 Score=34.28 Aligned_cols=35 Identities=0% Similarity=-0.248 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDL-HPGHSY 326 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 326 (341)
..|.....++.+.+-++-++...+.|++. .++++.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 36777888889999999999999999965 344544
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.15 E-value=6.6 Score=27.96 Aligned_cols=53 Identities=15% Similarity=-0.031 Sum_probs=29.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
+..+|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|-+.+.+|.+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34555555555555555444455566666666666666666666666666554
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.27 E-value=5 Score=24.88 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16611 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI 330 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 330 (341)
.+|..+...|++++|..+|-+|+...|+-.+....
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46666666677777777777777776665554433
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.93 E-value=11 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=23.7
Q ss_pred HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
..+|+-++-.+.+...+...+-+ +..+..+|.+|.+.|+..+|.+.+.+|.+
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444444444444433333333 45555555555555555555555555443
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.79 E-value=20 Score=29.90 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=16.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 297 QAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
....|...++...|...+....+
T Consensus 193 aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33447788999999887665553
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.30 E-value=9.9 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=23.6
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16611 242 AIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287 (341)
Q Consensus 242 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 287 (341)
+...|.-+... ....+..|...|..+...|++.+|...|+..++..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444444432 23345555555555555566666666655555543
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.85 E-value=9.3e-05 Score=64.24 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=23.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
..|...|.+++-+..++.++.+..-+......||.+|.+
T Consensus 237 ~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 334555666666666666666555555566666666553
No 273
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.81 E-value=8.4 Score=33.70 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC
Q psy16611 191 NNLALCCFYSQQYDMVVTCFERALSLA--------LNENAADVWYNISHVAIGISDTRLAIQCLHLALSI-DSSH 256 (341)
Q Consensus 191 ~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 256 (341)
..+-.+|++.++...+...++..-... |.......++.+|..+...++|.+|.+.+..|++. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345577888888888877776543321 11134567788888888888888888888888887 6654
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.71 E-value=8.4 Score=28.31 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
+..|...|..+...|++.+|.+.|+.+++..
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455555555555555555555555555443
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=78.66 E-value=17 Score=26.58 Aligned_cols=61 Identities=3% Similarity=-0.188 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16611 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQ------NNLAVLEAREGHIERASTYLQAAAAS 286 (341)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~------~~l~~~~~~~g~~~~A~~~~~~al~~ 286 (341)
-+..+..++..|+|-+|-+.++.+....+.. ...| ...|..+.+.|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455666677788888888888888776443 1222 22334456778888888888888763
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.49 E-value=23 Score=26.97 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 288 (341)
..+|..++..+ ..+...++...|.-+... ....+..|...|..+...|++.+|...|+..++..-
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 56777777665 234466788888777654 466688888889999999999999999999998654
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.26 E-value=7.9 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=12.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16611 193 LALCCFYSQQYDMVVTCFERALSLALNE 220 (341)
Q Consensus 193 la~~~~~~~~~~~A~~~~~~al~~~~~~ 220 (341)
+|..+...|++++|..+|-+|+...|..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3444444444444444444444444433
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.51 E-value=24 Score=25.78 Aligned_cols=60 Identities=10% Similarity=-0.100 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHH------HHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYN------QAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~------l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
+.-+..++..|+|-+|-+.++.+....+.. ...|.. .|....+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455677888899999999999999876544 223333 333466789999999999999864
No 279
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.99 E-value=11 Score=28.81 Aligned_cols=81 Identities=7% Similarity=0.062 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16611 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263 (341)
Q Consensus 187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 263 (341)
....+.+|.+++..++|.+|.+.+..|+...|.. ....++..+.-+-+-+|++.. ...+++ .+. ..+..+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L 86 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV 86 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence 3457889999999999999999999999988766 222344445555566777543 233332 111 134555
Q ss_pred HHHHHHhCCHHH
Q psy16611 264 AVLEAREGHIER 275 (341)
Q Consensus 264 ~~~~~~~g~~~~ 275 (341)
..+ .+.|+...
T Consensus 87 ~~A-vr~Gdl~~ 97 (203)
T 3t5x_A 87 TRA-VSEGNLLL 97 (203)
T ss_dssp HHH-HHHTCHHH
T ss_pred HHH-HHhCCHHH
Confidence 443 46666543
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.81 E-value=4.8 Score=25.73 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=8.8
Q ss_pred hcCChHHHHHHHHHHH
Q psy16611 165 YNDQPEVALLFYRRLL 180 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al 180 (341)
..|++++|+.+|..++
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555555544
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.90 E-value=13 Score=28.39 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16611 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL-----SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295 (341)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 295 (341)
......+.+|.+++..++|.+|.+.+.+|++..|.... ++..+.-+-..+|++.. ...+++ .+. ..+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~ 84 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFA 84 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHH
Confidence 34678899999999999999999999999999887643 33344444566787653 333332 121 2455
Q ss_pred HHHHHHHHcCCHHHHH
Q psy16611 296 NQAVISNLAGDLQESY 311 (341)
Q Consensus 296 ~l~~~~~~~g~~~~A~ 311 (341)
.+..++ +.|+...-.
T Consensus 85 ~L~~Av-r~Gdl~~f~ 99 (203)
T 3t5x_A 85 EVTRAV-SEGNLLLLH 99 (203)
T ss_dssp HHHHHH-HHTCHHHHH
T ss_pred HHHHHH-HhCCHHHHH
Confidence 666554 567765433
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.73 E-value=5.2 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=9.0
Q ss_pred hcCChHHHHHHHHHHH
Q psy16611 165 YNDQPEVALLFYRRLL 180 (341)
Q Consensus 165 ~~~~~~~A~~~~~~al 180 (341)
..|++++|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4456666666555544
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.32 E-value=27 Score=27.03 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
+..++|.-+....-....+..|...|..+...|++.+|.+.|+.+++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4445555544443333335556666666666666666666666666544
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.97 E-value=43 Score=27.58 Aligned_cols=25 Identities=8% Similarity=-0.141 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLH 247 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~ 247 (341)
+..+..+|..|...|++.+|..+|-
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7778888888888888888877764
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=70.86 E-value=66 Score=29.71 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCC
Q psy16611 294 HYNQAVIS--NLAGDLQESYNIVKKSLDLHPGH 324 (341)
Q Consensus 294 ~~~l~~~~--~~~g~~~~A~~~~~~al~~~p~~ 324 (341)
+..+..++ ...|+++.|+..+++ +.+-|.+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34445544 788999999999988 6677766
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.42 E-value=11 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAA 283 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~a 283 (341)
...+..+...|+|++||++.+++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 33444455555555555544443
No 287
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=69.33 E-value=41 Score=26.75 Aligned_cols=162 Identities=11% Similarity=-0.049 Sum_probs=0.0
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYN-DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 199 (341)
...++.+..+.++|++.+...+++.+.++. ..+-...+..+|-.. |....+...+...-+.......-...-..--++
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr 113 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 113 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHHhh-----------ccccchHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhc------
Q psy16611 200 SQQYDMVVTCFERALSL-----------ALNENAADVWYNISHVAIGISDT----------RLAIQCLHLALSI------ 252 (341)
Q Consensus 200 ~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~------ 252 (341)
..=-.+-...+...+.+ .... ...+...|..|...-.+ +.|...|++|+.+
T Consensus 114 ~kIe~EL~~iC~dil~lld~~Lip~a~~~Esk--VFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~ 191 (261)
T 3ubw_A 114 QMVETELKLICCDILDVLDKHLIPAANTGESK--VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP 191 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcHHHH--HHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCC
Q ss_pred --CCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Q psy16611 253 --DSSHGLSQNNLAVLEAR-EGHIERASTYLQAAAA 285 (341)
Q Consensus 253 --~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 285 (341)
+|-......+.+..|+. +++.++|....++++.
T Consensus 192 pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 192 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=69.24 E-value=13 Score=32.54 Aligned_cols=89 Identities=8% Similarity=-0.020 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHhhcccc-----------chH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------CCH
Q psy16611 202 QYDMVVTCFERALSLALNE-----------NAA---DVWYNISHVAIGISDTRLAIQCLHLALSIDS----------SHG 257 (341)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~-----------~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~ 257 (341)
..+++...+.+++...-.+ ... .....+-.+|++.++..-+...++..-.... +..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4566777777776652111 111 2234556889999999988888765433221 124
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCc
Q psy16611 258 LSQNNLAVLEAREGHIERASTYLQAAAAS-SPYL 290 (341)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 290 (341)
..++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 57889999999999999999999999998 6654
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=68.88 E-value=8.6 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAASSPY 289 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~ 289 (341)
.+|..+...|+++.|+.+|-+|+...|+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4555556666666666666555555543
No 290
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=66.35 E-value=45 Score=26.09 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=31.4
Q ss_pred hhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q psy16611 121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHF 164 (341)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~ 164 (341)
..+.++.+..+.++|++.+.+.+++.+.++. +.+-...+..+|-
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 3445677788889999999999998887654 4455556666554
No 291
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=66.34 E-value=0.0036 Score=54.62 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=31.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ 281 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (341)
.|...|.|++-+..++.++.+..-+.-....||.+|.+- +.++-.++++
T Consensus 238 ~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 238 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp SSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 345567777777777777777777777777788777554 4444444443
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=66.19 E-value=12 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=15.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16611 192 NLALCCFYSQQYDMVVTCFERALSLALNE 220 (341)
Q Consensus 192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~ 220 (341)
.+|..+...|+++.|+.+|-+|+...|..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34555555555555555555555555443
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.96 E-value=12 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q psy16611 190 FNNLALCCFYSQQYDMVVTCFERAL 214 (341)
Q Consensus 190 ~~~la~~~~~~~~~~~A~~~~~~al 214 (341)
+...+..+...|+|++||++.+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 294
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.90 E-value=44 Score=28.53 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh---C----CC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 259 SQNNLAVLEAREGHIERASTYLQAAAAS---S----PY-LYETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~----p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
+...++..|...|+.++|...++++-.. . |. +...+...+..+...+++..+...+-..+.
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445566666667777777766666432 1 10 112334455556666666666555555543
No 295
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=64.24 E-value=51 Score=26.00 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=30.6
Q ss_pred hhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q psy16611 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHF 164 (341)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~ 164 (341)
.+.++.+..+.++|++...+.+++...++. ..+-...+..+|-
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYK 50 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYK 50 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 445667788889999999999888887665 4445555665553
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=63.76 E-value=25 Score=22.31 Aligned_cols=16 Identities=38% Similarity=0.464 Sum_probs=6.3
Q ss_pred HHhCCHHHHHHHHHHH
Q psy16611 268 AREGHIERASTYLQAA 283 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~a 283 (341)
-..|+|++|+.+|..+
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3334444444444333
No 297
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=63.24 E-value=28 Score=22.70 Aligned_cols=55 Identities=11% Similarity=-0.053 Sum_probs=32.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 263 LAVLEAREGHIERASTYLQAAAASSPYLYE------THYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
.|..++..|+|-+|-+.++......|.... +...-|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 355566667777777777777766643211 222233334456776 7777777765
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.72 E-value=42 Score=24.20 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16611 204 DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253 (341)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (341)
+++.++|.-+....-....+..|...|..+...|++.+|.+.|+.+++..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33666666665554433336677777777777777777777777777654
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=61.19 E-value=8.3 Score=24.25 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=23.1
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHh
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR 148 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 148 (341)
.....+|+-|...|+|+.|+.+|+.+++.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34556788888899999999999888764
No 300
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=59.24 E-value=14 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHH
Q psy16611 235 GISDTRLAIQCLHLAL 250 (341)
Q Consensus 235 ~~g~~~~A~~~~~~al 250 (341)
..|++++|+.+|..++
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4455555555555544
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=57.97 E-value=33 Score=21.73 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=10.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q psy16611 262 NLAVLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al 284 (341)
..|.-.-+.|+|++|+.+|..++
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444455555555444444
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=55.21 E-value=41 Score=21.94 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=9.9
Q ss_pred HHHHcCChhHHHHHHHHHHhhc
Q psy16611 196 CCFYSQQYDMVVTCFERALSLA 217 (341)
Q Consensus 196 ~~~~~~~~~~A~~~~~~al~~~ 217 (341)
.++..|+|-+|-+.++..-...
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCChHHHHHHHHHHHhhC
Confidence 3344444444444444444433
No 303
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=51.43 E-value=45 Score=21.30 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 262 NLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
..|.-.-..|+|++|+.+|..+++
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555666666666665554
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.31 E-value=1.1e+02 Score=25.55 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-------HH---------hcCCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGISDTRLAIQCLHL-------AL---------SIDSSHGLSQNNLA-VLEAREGHIERASTYLQAAA 284 (341)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~-------al---------~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al 284 (341)
+..+..+|..|.+.+++.+|..+|-- .+ +..|.....+...+ ..|...++...|...+....
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67777888888888888777766521 00 01122333333333 34577788888887665544
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.63 E-value=20 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 260 QNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
...+|.=|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34567777778888888888877765
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.60 E-value=51 Score=21.39 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=12.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
...|.-.-..|+|++|+.+|..+++
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444555555555555555543
No 307
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=47.73 E-value=1e+02 Score=24.47 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=33.4
Q ss_pred HhhhcHHHHHHHcCCchHHHHHHHHHHHhC---CC-CHHHHHHHHHHHH
Q psy16611 120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD---AT-CMEAIACIGVNHF 164 (341)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~-~~~~~~~la~~~~ 164 (341)
...+.++.+..+.++|++.+.+.+++.+.+ +. +.+-...+..+|-
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyK 77 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYK 77 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 445567788889999999999999999876 43 4555666666664
No 308
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.67 E-value=1.4e+02 Score=25.37 Aligned_cols=92 Identities=9% Similarity=-0.141 Sum_probs=58.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-----------------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-----
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMG-----------------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA----- 217 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 217 (341)
..+.....+.++|++++++....- .....+...++..|...|+.++|...++++-..-
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556678888888887653321 1123455677888888899999988888876431
Q ss_pred ccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 218 LNE-NAADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 218 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
.+. .....+...+..+...+++..+...+-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 1244555566777778888877776666554
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.81 E-value=1e+02 Score=23.66 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 203 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 203 (341)
..++...|.|++|.+.+++....++.+......|..+-...+.+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~ 164 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA 164 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc
Confidence 34455667777777777777766555555555555554444433
No 310
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.81 E-value=60 Score=29.97 Aligned_cols=51 Identities=12% Similarity=-0.081 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16611 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307 (341)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 307 (341)
.......|...+..|+|.-|.+....++..+|++..+...++.+|.++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 344555677777888888888888888888888888888888887777643
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.78 E-value=1.1e+02 Score=23.57 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16611 239 TRLAIQCLHLALSIDSSHGLS--------QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303 (341)
Q Consensus 239 ~~~A~~~~~~al~~~p~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 303 (341)
.+.|+..++..-+-.+-.... ....-.++.+.|.|++|.+.+++.+..++.+......|..+-.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 456666666655544322111 11223445677777777777777776555444444444444333
No 312
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=43.53 E-value=1.5e+02 Score=25.03 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 172 ALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 172 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
++.+|.+++.. .......|..+|-.+++.+++.+|+..+-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 66666666653 3344566777888888889999888888777554
No 313
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.42 E-value=52 Score=30.39 Aligned_cols=49 Identities=6% Similarity=0.052 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16611 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272 (341)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 272 (341)
......|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4456677888889999999999999999999999998888888766653
No 314
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.34 E-value=1.5e+02 Score=24.46 Aligned_cols=34 Identities=3% Similarity=-0.140 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 328 (341)
..-....++.++|..|....++.+++.|....+.
T Consensus 211 r~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~ 244 (325)
T 3mv2_A 211 QVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE 244 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence 3334457788999999999999999998765443
No 315
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=41.14 E-value=1e+02 Score=22.41 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16611 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR-LAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272 (341)
Q Consensus 194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 272 (341)
+...+-..+|.+.+..++.. +|........+.+|..|.....+. +..+.....+.+..+ -.+.+=++|.-.|+
T Consensus 15 a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIyiGRg~ 88 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIYIGRSQ 88 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHHHcCCc
Confidence 33444455666555554432 333333555666666666554443 222222222222111 11122244455566
Q ss_pred HHHHHHHHHH
Q psy16611 273 IERASTYLQA 282 (341)
Q Consensus 273 ~~~A~~~~~~ 282 (341)
+++|+..-+.
T Consensus 89 ~~eAlDiA~~ 98 (161)
T 2ynq_A 89 SEEALELART 98 (161)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 6666665544
No 316
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.90 E-value=65 Score=28.06 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
.++..++++|...|++++|..+.++++.
T Consensus 191 aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 191 AARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3677788888888888888888888875
No 317
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.45 E-value=68 Score=20.24 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 261 NNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
...|.-.-..|+|++|+.+|..+++
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444455555555555555543
No 318
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.84 E-value=26 Score=23.88 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHH
Q psy16611 271 GHIERASTYLQAAA 284 (341)
Q Consensus 271 g~~~~A~~~~~~al 284 (341)
|+.+.|+.+|++.+
T Consensus 36 g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 36 GQKEEAKNYYKQGI 49 (116)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555444443
No 319
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.71 E-value=1.6e+02 Score=24.27 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSY 326 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 326 (341)
..-....++.++|.-|..+.++.+++.|+...
T Consensus 202 r~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 202 RTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 33344577889999999999999999886443
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.50 E-value=61 Score=20.46 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=5.8
Q ss_pred hcCCHHHHHHHHHH
Q psy16611 235 GISDTRLAIQCLHL 248 (341)
Q Consensus 235 ~~g~~~~A~~~~~~ 248 (341)
..|++++|+.+|..
T Consensus 25 ~~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 25 TATQYEEAYTAYYN 38 (85)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 33444444444433
No 321
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=39.39 E-value=60 Score=21.02 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhCCC
Q psy16611 275 RASTYLQAAAASSPY 289 (341)
Q Consensus 275 ~A~~~~~~al~~~p~ 289 (341)
+|+++|..++...++
T Consensus 40 ~Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 40 EGIDMLLQVLKGTKE 54 (93)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 344555555554443
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.60 E-value=1.7e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=-0.150 Sum_probs=20.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16611 231 HVAIGISDTRLAIQCLHLALSIDSSHG 257 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 257 (341)
...++.++|..|..+.++.+++.|...
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 445677888888888888888877543
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=38.03 E-value=1.8e+02 Score=24.50 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 223 ADVWYNISHVAIGI--SDTRLAIQCLHLALSID-----SSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 223 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
+.++.+||.+-... .....++.+|.+++... ..+..-|..+|..+++.+++.+|+..+..+-.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 44555555444322 11122566666666532 23344555666667777777777777666644
No 324
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=37.66 E-value=74 Score=27.77 Aligned_cols=28 Identities=7% Similarity=0.167 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
.++..++++|...|++++|..+.++++.
T Consensus 197 aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 197 AAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3677788888888888888888888875
No 325
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.09 E-value=62 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=11.4
Q ss_pred HHhCCHHHHHHHHHHHHH
Q psy16611 268 AREGHIERASTYLQAAAA 285 (341)
Q Consensus 268 ~~~g~~~~A~~~~~~al~ 285 (341)
-..|+|++|+.+|..+++
T Consensus 29 D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 345677776666666654
No 326
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.32 E-value=93 Score=27.06 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16611 222 AADVWYNISHVAIGISDTRLAIQCLHLALS 251 (341)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (341)
...++..++.+|+..|+|++|....++++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 366788889999999999999998888874
No 327
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.05 E-value=53 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=10.9
Q ss_pred HHcCCHHHHHHHHHHHHh
Q psy16611 302 NLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 302 ~~~g~~~~A~~~~~~al~ 319 (341)
-..|++++|+.+|..+++
T Consensus 29 D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 445666666666666554
No 328
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=33.55 E-value=80 Score=27.67 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
.++..++++|...|++++|..+.++++..
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 37778889999999999999999988864
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.47 E-value=32 Score=26.01 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q psy16611 232 VAIGISDTRLAIQCLHLALSIDSS 255 (341)
Q Consensus 232 ~~~~~g~~~~A~~~~~~al~~~p~ 255 (341)
++++.|.+++|.+.+++.+..++.
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~ 149 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNS 149 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----
T ss_pred HHHHccchHHHHHHHHHHhcCCCC
Confidence 344444455555444444444433
No 330
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.39 E-value=2.4e+02 Score=24.39 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 242 AIQCLHLALSI-----DSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 242 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
++.+|.+++.. ...+..-|..+|..+++.+++.+|+..+..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 44455555442 233455666777788888888888888777654
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.32 E-value=1.7e+02 Score=22.67 Aligned_cols=77 Identities=5% Similarity=0.016 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCChhHH
Q psy16611 138 SVKYYKLILKRDATC---------MEAIACIGVNHFYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMV 206 (341)
Q Consensus 138 A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A 206 (341)
-..++++++....++ ..+|..++. . .+++..+|..+.. +.-..+..|...|..+...|++.+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~----~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 169 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVN----Y--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKA 169 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT----T--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHH----c--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHH
Confidence 457788887764432 233444443 1 2456677776665 4567788899999999999999999
Q ss_pred HHHHHHHHhhcccc
Q psy16611 207 VTCFERALSLALNE 220 (341)
Q Consensus 207 ~~~~~~al~~~~~~ 220 (341)
..+|+..++..-..
T Consensus 170 ~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 170 DEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTCBS
T ss_pred HHHHHHHHHcCCcc
Confidence 99999999987665
No 332
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=33.29 E-value=1.1e+02 Score=26.77 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 222 AADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
...++..++.+|+..|+|++|....++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4678888999999999999999999998853
No 333
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=33.29 E-value=23 Score=22.87 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHhh
Q psy16611 203 YDMVVTCFERALSL 216 (341)
Q Consensus 203 ~~~A~~~~~~al~~ 216 (341)
+++|..+..++|..
T Consensus 13 h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 13 HKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444444
No 334
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=32.93 E-value=1e+02 Score=20.07 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=8.0
Q ss_pred HHHhcCChHHHHHHHHHH
Q psy16611 162 NHFYNDQPEVALLFYRRL 179 (341)
Q Consensus 162 ~~~~~~~~~~A~~~~~~a 179 (341)
.|+..++.+..+..+...
T Consensus 19 ~~f~~~n~~~m~~~L~pL 36 (94)
T 3fap_B 19 LYFGERNVKGMFEVLEPL 36 (94)
T ss_dssp HHHTTCCHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHH
Confidence 344444444444444433
No 335
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=32.76 E-value=1e+02 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
++++..|.++.+.|+..+|...+.++.+
T Consensus 339 Ev~Li~AEA~~~~g~~~~A~~~lN~vR~ 366 (461)
T 3kez_A 339 EAYLNAAEAAVQTGDNAKAVKYLNSIVQ 366 (461)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 4788899999999999999999887764
No 336
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=31.28 E-value=91 Score=21.62 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=7.8
Q ss_pred HHHHcCCchHHHHHHHH
Q psy16611 128 IFEGLNNMPMSVKYYKL 144 (341)
Q Consensus 128 ~~~~~g~~~~A~~~~~~ 144 (341)
.++..++.+..+..++.
T Consensus 49 lyf~~~n~~~m~~~L~p 65 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEP 65 (126)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHH
Confidence 33444455544444433
No 337
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.26 E-value=1.1e+02 Score=27.01 Aligned_cols=29 Identities=10% Similarity=-0.127 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 292 ETHYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
.++..++++|..+|++++|..+.++++..
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 37778899999999999999999988865
No 338
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=30.65 E-value=1.2e+02 Score=20.17 Aligned_cols=77 Identities=10% Similarity=-0.131 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Q psy16611 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI 313 (341)
Q Consensus 234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (341)
......++|..+. ..+...+....+-.-....+...|+|++|....+... .++.--.++.+-.+.|-.+++...
T Consensus 17 TG~H~HqEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~r 90 (115)
T 2uwj_G 17 SGQHCHEEALCIA-EWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRR 90 (115)
T ss_dssp HTTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHH
Confidence 3344555554433 3334444422233333445677788877776654322 444445566677777777777766
Q ss_pred HHH
Q psy16611 314 VKK 316 (341)
Q Consensus 314 ~~~ 316 (341)
+.+
T Consensus 91 L~~ 93 (115)
T 2uwj_G 91 LAG 93 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 633
No 339
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.86 E-value=2.7e+02 Score=24.02 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=31.5
Q ss_pred HHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16611 172 ALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 216 (341)
Q Consensus 172 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 216 (341)
++.+|.+++.. ...+..-|..+|-.+++.+++.+|+..+-.+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 56666666543 3345566778888888888888888888776543
No 340
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=29.07 E-value=1.2e+02 Score=19.51 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH--------------HHHHHHHHhcCCCCHHHHH
Q psy16611 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES--------------YNIVKKSLDLHPGHSYSWD 329 (341)
Q Consensus 273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A--------------~~~~~~al~~~p~~~~~~~ 329 (341)
+++|+.++++.-....+++..|...-.++..-..-... ...+.++-.+.-++++...
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~ 80 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLS 80 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHH
Confidence 44566666666555555555555444443322211111 2566666666666665443
No 341
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=28.93 E-value=1.5e+02 Score=20.60 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q psy16611 231 HVAIGISDTRLAIQCLHLA 249 (341)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~a 249 (341)
.+++..++.+..+..++..
T Consensus 48 rlyf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 48 RLYFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHH
Confidence 3444444555444444333
No 342
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=28.11 E-value=1.2e+02 Score=19.44 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16611 295 YNQAVISNLAGDLQESYNIVKKSLDLH 321 (341)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 321 (341)
..-|.-+++.++|.+|...|+++..+.
T Consensus 57 i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 57 IAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 334444555666666666666655443
No 343
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.57 E-value=1.7e+02 Score=25.84 Aligned_cols=31 Identities=13% Similarity=-0.102 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16611 222 AADVWYNISHVAIGISDTRLAIQCLHLALSI 252 (341)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (341)
...++..++.+|+..++|++|....++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3668888999999999999999999998753
No 344
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.93 E-value=1.9e+02 Score=21.04 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCC------C---HHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16611 139 VKYYKLILKRDAT------C---MEAIACIGVNHFYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVV 207 (341)
Q Consensus 139 ~~~~~~~l~~~~~------~---~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~ 207 (341)
..++++++....+ + ..+|..++... ++ +..+|..+.. +.-..+..|...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 5567777765433 2 33444444432 33 5666776665 45677888999999999999999999
Q ss_pred HHHHHHHhhcccc
Q psy16611 208 TCFERALSLALNE 220 (341)
Q Consensus 208 ~~~~~al~~~~~~ 220 (341)
++|+.+++.....
T Consensus 117 ~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 117 AIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHTTCBS
T ss_pred HHHHHHHHcCCCc
Confidence 9999999987665
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.44 E-value=67 Score=24.31 Aligned_cols=39 Identities=10% Similarity=-0.053 Sum_probs=18.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16611 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198 (341)
Q Consensus 160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 198 (341)
..++...|.+++|.+.+++....++.+......|..+-.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 345556666666666666665555444444444444333
No 346
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=24.50 E-value=1.6e+02 Score=19.61 Aligned_cols=81 Identities=12% Similarity=-0.117 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQ 308 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 308 (341)
++.+-......++|..+. ..+...+....+-.-....+...|+|++|....+... .++.--.++.+-.+.|-..
T Consensus 13 ~AL~gTG~H~HqEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s 86 (116)
T 2p58_C 13 IALIGTGNHYHEEANCIA-EWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGS 86 (116)
T ss_dssp HHHHHHTTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHH
T ss_pred HHHHHccchHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHH
Confidence 333334445556655443 3344444422233333455677788888777665432 4444455666777778777
Q ss_pred HHHHHHH
Q psy16611 309 ESYNIVK 315 (341)
Q Consensus 309 ~A~~~~~ 315 (341)
++...+.
T Consensus 87 ~le~rL~ 93 (116)
T 2p58_C 87 ALESRLN 93 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766663
No 347
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.89 E-value=2e+02 Score=25.52 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLDL 320 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 320 (341)
++..++++|...+++++|....++++..
T Consensus 184 A~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 184 AYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888888888888888888888753
No 348
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.45 E-value=1.4e+02 Score=20.29 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHhhc
Q psy16611 203 YDMVVTCFERALSLA 217 (341)
Q Consensus 203 ~~~A~~~~~~al~~~ 217 (341)
+++|..+..++|.++
T Consensus 19 h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 445555555555543
No 349
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.10 E-value=3.1e+02 Score=21.61 Aligned_cols=44 Identities=9% Similarity=-0.070 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCC 197 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 197 (341)
+-+..++.+..+.++|++...+.+++...++.- .+-.+.|..+|
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 445677888889999999999999999887653 33333444433
No 350
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=20.94 E-value=1.3e+02 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16611 293 THYNQAVISNLAGDLQESYNIVKKSLD 319 (341)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 319 (341)
++..++++|...+++++|+...++++.
T Consensus 182 A~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 182 AYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 677788888888999998888888764
No 351
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.87 E-value=3.2e+02 Score=21.70 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CC-cHHHHHHHHHHH
Q psy16611 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMG---LY-NAELFNNLALCC 197 (341)
Q Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~ 197 (341)
+-+..++.+..+.++|++...+.+++.+.+ +. +.+-.+.+..+|
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 445567888888999999999999999976 43 344444444444
No 352
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.87 E-value=1.9e+02 Score=19.20 Aligned_cols=49 Identities=12% Similarity=-0.098 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16611 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282 (341)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (341)
....+++.|+|++|..+.+..- .++.-..++.+-.+.|-.+++...+.+
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3344556666666655443321 233333445555666666666555533
No 353
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.65 E-value=3e+02 Score=21.39 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Q psy16611 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCC 197 (341)
Q Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 197 (341)
-+-+..++.+..+.++|++...+.+++...++. +.+-.+.+..+|
T Consensus 5 re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 5 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 345567788888899999999999999987764 333334444443
No 354
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=20.11 E-value=4.2e+02 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16611 242 AIQCLHLALSI-----DSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285 (341)
Q Consensus 242 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 285 (341)
++.+|++++.. ...+..-|..+|-.+.+.++|.+|+..+..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 34455555542 223355566677777777777777777777654
Done!