BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16615
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
E+ K FTR EV N++KD I N VY+VT +L EHPGGEE+L+EQ G+DATE F D+
Sbjct: 4 EDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDV 63
Query: 63 GHSSDARETMKKFKVGELVPRERTD 87
GHSSDARE MK++KVGELV ER++
Sbjct: 64 GHSSDAREMMKQYKVGELVAEERSN 88
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%)
Query: 5 TKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGH 64
K +T +E++ +++ + +I VY++T +L+EHPGGEE+LLEQ G DATE F D+GH
Sbjct: 2 VKYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGH 61
Query: 65 SSDARETMKKFKVGELVPRER 85
S DARE +K F +GEL P +R
Sbjct: 62 SPDAREMLKTFIIGELHPDDR 82
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 58/83 (69%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E+K ++ + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 8 DVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K F +GEL P +R+
Sbjct: 68 HSTDARELSKTFIIGELHPDDRS 90
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 58/83 (69%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E+K ++ + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 3 DVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K F +GEL P +R+
Sbjct: 63 HSTDARELSKTFIIGELHPDDRS 85
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
E K +T +E++ ++ + +I + VY++T +L EHPGGEE+L EQ G DATE F D+
Sbjct: 7 EAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDV 66
Query: 63 GHSSDARETMKKFKVGELVP--RERTDKP 89
GHS+DARE K F +GEL P R + +KP
Sbjct: 67 GHSTDAREMSKTFIIGELHPDDRPKLNKP 95
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E++ + + +I + VY++T YL EHPGGEE+L EQ G DATE F D+G
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K + +GEL P +R+
Sbjct: 63 HSTDARELSKTYIIGELHPDDRS 85
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 56/80 (70%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T YL EHPGGEE+L EQ G DATE F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E++ + + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 8 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K + +GEL P +R+
Sbjct: 68 HSTDARELSKTYIIGELHPDDRS 90
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E++ + + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 7 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 66
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K + +GEL P +R+
Sbjct: 67 HSTDARELSKTYIIGELHPDDRS 89
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D+GHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SDARETMKKFKVGELVPRERT 86
+DARE K F +GEL P +R+
Sbjct: 65 TDARELSKTFIIGELHPDDRS 85
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D+GHS
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 66 SDARETMKKFKVGELVPRERT 86
+DARE K F +GEL P +R+
Sbjct: 69 TDARELSKTFIIGELHPDDRS 89
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E++ + + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K + +GEL P +R+
Sbjct: 63 HSTDARELSKTYIIGELHPDDRS 85
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E++ + + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+DARE K + +GEL P +R+
Sbjct: 63 HSTDARELSKTYIIGELHPDDRS 85
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 13 VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
K N++++ ++I+ VY++T +L+EHPGGEEILLEQ G DATE F DIGHS DARE +
Sbjct: 13 AKRNTAEETWMVIHGR-VYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAREML 71
Query: 73 KKFKVGELVP 82
K++ +G++ P
Sbjct: 72 KQYYIGDVHP 81
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Query: 2 VEETKLFTRKE--VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVF 59
VE + + R E K NS K+ ++I+ VY+VT +L EHPGGEE+LLEQ G DA+E F
Sbjct: 5 VETSVTYYRLEEVAKRNSLKELWLVIHGR-VYDVTRFLNEHPGGEEVLLEQAGVDASESF 63
Query: 60 NDIGHSSDARETMKKFKVGELVP 82
D+GHSSDARE +K++ +G++ P
Sbjct: 64 EDVGHSSDAREMLKQYYIGDIHP 86
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 13 VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
K N++++ ++I+ VY++T +L+EHPGGEE+LLEQ G DATE F D+GHS DARE +
Sbjct: 11 AKRNTAEETWMVIHGR-VYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREML 69
Query: 73 KKFKVGELVP 82
K++ +G++ P
Sbjct: 70 KQYYIGDVHP 79
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 13 VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
K N++++ ++I+ VY++T +L+EHPGGEE+LLEQ G DATE F D+GHS DARE +
Sbjct: 13 AKRNTAEETWMVIHGR-VYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREML 71
Query: 73 KKFKVGELVP 82
K++ +G++ P
Sbjct: 72 KQYYIGDVHP 81
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 13 VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
K N++++ ++I+ VY++T +L+EHPGGEE+LLEQ G DATE F D+GHS DARE +
Sbjct: 18 AKRNTAEETWMVIHGR-VYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAREML 76
Query: 73 KKFKVGELVPRERTDKPK 90
K++ +G++ P + KPK
Sbjct: 77 KQYYIGDVHPNDL--KPK 92
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG 63
+ K +T +E++ + + +I + VY++T +L EHPGGEE+L EQ G DATE F D+G
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSSDARETMKKFKVGELVPRERT 86
HS+D RE K + +GEL P +R+
Sbjct: 63 HSTDVRELSKTYIIGELHPDDRS 85
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 56/80 (70%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE + D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 56/80 (70%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE + D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE L EQ G DATE F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE L EQ G DATE F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L EQ G DATE F D GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE L EQ G DATE F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 13 VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
K N+S++ ++I+ VY++T +L+EHPGGEE+L EQ G DATE F D+GHS DARE +
Sbjct: 13 AKRNTSEETWMVIHGR-VYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREML 71
Query: 73 KKFKVGELVPRERTDKPK 90
K++ +G++ P + KPK
Sbjct: 72 KQYYIGDVHPNDL--KPK 87
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 54/80 (67%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGE +L EQ G DAT F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EH GGEE+L EQ G DATE F D+GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSD 67
+ +EV +++ ++ ++ VY++T +L+EHPGGEE+L EQ G DATE F D+GHS D
Sbjct: 13 YRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPD 72
Query: 68 ARETMKKFKVGELVPRERTDKPK 90
ARE K++ +G++ P + KPK
Sbjct: 73 AREMSKQYYIGDVHPNDL--KPK 93
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 13 VKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETM 72
K N+S++ ++++ VY++T +L+EHPGGEE+L EQ G DATE F D+GHS DARE
Sbjct: 18 AKRNTSEETWMVLHGR-VYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMS 76
Query: 73 KKFKVGELVPRERTDKPK 90
K++ +G++ P + KPK
Sbjct: 77 KQYYIGDVHPNDL--KPK 92
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGEE+L Q G DAT F +GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 66 SDARETMKKFKVGELVP 82
+DARE K F +GEL P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGE +L Q G DAT F +GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 SDARETMKKFKVGELVPRER 85
+DARE K F +GEL P +R
Sbjct: 63 TDARELSKTFIIGELHPDDR 82
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
K +T +E++ +++ + +I VY++T +L EHPGGE +L Q G DAT F +GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 SDARETMKKFKVGELVP 82
+DARE K F +GEL P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG-H 64
K +T++EV +++++++ IIYD V+++T++ EHPGG +++L + G+DAT V + H
Sbjct: 4 KKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPH 62
Query: 65 SSDARETMKKFK 76
A MKK K
Sbjct: 63 VKAADVVMKKLK 74
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 9 TRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDA 68
T +E+K ++ KD+ I VYNV+ Y+ HPGGE+ L+ G D TE+F+ + +
Sbjct: 9 TEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNY 68
Query: 69 RETMKKFKVGELV 81
+K+ VG +
Sbjct: 69 ESMLKECLVGRMA 81
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIG-- 63
+FT ++V ++ S D+ + VY++T Y+ HPG ++L G+++TE +
Sbjct: 8 PVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYG 67
Query: 64 --HSSDARETMKKFKVGEL 80
HSS A ++++ +G L
Sbjct: 68 EPHSSLAARLLQRYLIGTL 86
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 FTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGEDATEVF---NDI 62
+TR+EV + S ++ V + + V++VT+++ HPGG ++ILL G A E F +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG--ALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 FTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGEDATEVF---NDI 62
+TR+EV + S ++ V + + V++VT+++ HPGG ++ILL G A E F +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG--ALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 FTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGEDATEVF---NDI 62
+TR+EV + S ++ V + + V++VT+++ HPGG ++ILL G A E F +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG--ALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 FTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGEDATEVF---NDI 62
+TR+EV + S ++ V + + V++VT+++ HPGG ++ILL G A E F +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG--ALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 FTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGEDATEVF---NDI 62
+TR+EV + S ++ V + + V++VT+++ HPGG ++ILL G A E F +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG--ALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 FTRKEV-KDNSSKDNVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGEDATEVF---NDI 62
+TR+EV + S ++ V + + V++VT+++ HPGG ++ILL G A E F +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG--ALEPFWALYAV 64
Query: 63 GHSSDARETMKKFKVGELVPRERTDKP 89
E ++++KVGEL P E P
Sbjct: 65 HGEPHVLELLQQYKVGELSPDEAPAAP 91
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 3 EETKLFTRKEVKDNSSKD-NVVIIYDNGVYNVTNYLTEHPGG-EEILLEQNGE-DATEVF 59
E T ++T++EV ++S + + + + V++VT ++ HPGG +++L G +
Sbjct: 2 ESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWAL 61
Query: 60 NDIGHSSDARETMKKFKVGEL 80
+ + S RE + ++K+GEL
Sbjct: 62 YAVHNQSHVRELLAQYKIGEL 82
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 6 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 60
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 65
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 65
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 65
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 65
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 65
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+ EV ++ D+ ++ + VY++T +L HPGG++++ G+D T +F +
Sbjct: 6 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL 60
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
E+ L +++++++ + D VY++ ++ T+ IL + GED
Sbjct: 21 EKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAA 80
Query: 63 GHSSDARETMKKFKVGELV 81
D RE+M F VG+ +
Sbjct: 81 LQFEDTRESMHAFCVGQYL 99
>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
Length = 647
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 30 VYNVTNYLTEHPGGEEILLEQNGEDATEVFN 60
V N+ +L + PG E I LEQN + + +
Sbjct: 261 VENIQRFLNDFPGAETIRLEQNYRSTSNILS 291
>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
Length = 680
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 30 VYNVTNYLTEHPGGEEILLEQNGEDATEVFN 60
V N+ +L + PG E I LEQN + + +
Sbjct: 261 VENIQRFLNDFPGAETIRLEQNYRSTSNILS 291
>pdb|3TEK|A Chain A, Thermodbp: A Non-Canonical Single-Stranded Dna Binding
Protein With A Novel Structure And Mechanism
pdb|3TEK|B Chain B, Thermodbp: A Non-Canonical Single-Stranded Dna Binding
Protein With A Novel Structure And Mechanism
Length = 148
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 47 LLEQNGEDATEVFNDIGHSSDARET-------MKKFKVGELVPR---ERTD 87
L EQ G D +FN I S RET +KK+ E VPR ER D
Sbjct: 64 LREQFGPDGENIFNRIRDSEKFRETSRELFDGLKKWFFEEAVPRYNLERGD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,066,862
Number of Sequences: 62578
Number of extensions: 119286
Number of successful extensions: 304
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 65
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)