Query psy16615
Match_columns 110
No_of_seqs 196 out of 1107
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:26:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537|consensus 100.0 1.5E-31 3.3E-36 180.4 7.1 86 4-89 3-88 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.9 1.7E-26 3.7E-31 142.4 5.2 75 7-81 1-76 (76)
3 KOG0536|consensus 99.9 6.9E-26 1.5E-30 152.9 7.0 78 5-82 67-144 (145)
4 COG5274 CYB5 Cytochrome b invo 99.9 4.5E-22 9.7E-27 138.9 7.7 79 5-83 49-127 (164)
5 PLN02252 nitrate reductase [NA 99.9 5.1E-22 1.1E-26 167.9 7.6 84 4-88 516-599 (888)
6 PLN03199 delta6-acyl-lipid des 99.9 7.7E-22 1.7E-26 158.0 7.9 82 2-86 20-101 (485)
7 PLN03198 delta6-acyl-lipid des 99.9 5.3E-22 1.1E-26 160.2 6.9 78 5-84 103-180 (526)
8 KOG4232|consensus 99.7 1.1E-17 2.3E-22 130.9 2.8 83 5-89 7-91 (430)
9 KOG4576|consensus 99.6 5.8E-16 1.3E-20 105.3 2.9 83 3-87 77-163 (167)
10 COG4892 Predicted heme/steroid 99.2 6.6E-11 1.4E-15 72.2 5.2 76 5-83 1-78 (81)
11 KOG1110|consensus 98.4 4.3E-07 9.4E-12 64.6 4.8 56 4-61 54-113 (183)
12 KOG1108|consensus 97.6 4.3E-05 9.2E-10 56.6 2.5 56 5-61 59-117 (281)
13 PF14901 Jiv90: Cleavage induc 93.6 0.043 9.2E-07 35.4 1.5 15 24-38 59-73 (94)
14 KOG0720|consensus 82.4 0.73 1.6E-05 37.5 1.4 16 22-37 379-394 (490)
15 PF11698 V-ATPase_H_C: V-ATPas 72.8 0.29 6.2E-06 32.9 -2.9 34 30-65 65-98 (119)
16 PRK06549 acetyl-CoA carboxylas 62.9 5.2 0.00011 27.1 1.6 13 22-34 5-17 (130)
17 cd00256 VATPase_H VATPase_H, r 61.3 1.9 4.2E-05 34.8 -0.8 43 19-65 366-408 (429)
18 COG3424 BcsA Predicted naringe 56.0 4.4 9.6E-05 31.8 0.4 20 32-52 270-289 (356)
19 TIGR02148 Fibro_Slime fibro-sl 53.1 16 0.00034 23.4 2.5 22 15-36 23-45 (90)
20 PHA02131 hypothetical protein 52.0 13 0.00028 21.9 1.8 29 6-34 2-44 (70)
21 KOG2759|consensus 46.7 4.7 0.0001 32.7 -0.8 43 19-65 379-421 (442)
22 PF02797 Chal_sti_synt_C: Chal 41.5 12 0.00027 25.8 0.8 14 38-51 64-77 (151)
23 PF10618 Tail_tube: Phage tail 41.2 24 0.00053 23.4 2.1 25 20-44 7-31 (119)
24 PRK06764 hypothetical protein; 40.7 27 0.00059 22.3 2.1 17 16-32 80-96 (105)
25 PF05521 Phage_H_T_join: Phage 37.2 38 0.00083 20.1 2.5 18 20-37 65-82 (95)
26 TIGR01252 acetolac_decarb alph 32.7 63 0.0014 24.0 3.4 29 7-35 20-56 (232)
27 COG3970 Fumarylacetoacetate (F 30.9 37 0.00081 26.7 1.9 19 19-37 25-44 (379)
28 PF11093 Mitochondr_Som1: Mito 30.6 31 0.00066 21.7 1.2 16 1-16 1-16 (83)
29 PRK14578 elongation factor P; 29.5 44 0.00095 24.0 2.0 23 21-43 10-32 (187)
30 PRK05641 putative acetyl-CoA c 29.2 49 0.0011 23.0 2.1 15 20-34 23-37 (153)
31 PRK04542 elongation factor P; 27.8 49 0.0011 23.8 2.0 23 21-43 10-32 (189)
32 PF08207 EFP_N: Elongation fac 27.1 55 0.0012 18.7 1.8 23 21-43 8-30 (58)
33 PHA02671 hypothetical protein; 26.8 67 0.0015 23.1 2.5 29 6-36 48-76 (179)
34 PF03306 AAL_decarboxy: Alpha- 26.8 43 0.00093 24.6 1.6 29 7-35 18-54 (220)
35 PF12382 Peptidase_A2E: Retrot 25.7 41 0.00088 22.2 1.2 27 5-31 58-86 (137)
36 TIGR00037 eIF_5A translation i 24.4 32 0.0007 23.1 0.5 30 8-42 7-36 (130)
37 PF12652 CotJB: CotJB protein; 24.4 18 0.0004 22.4 -0.6 20 30-49 15-34 (78)
38 PF07533 BRK: BRK domain; Int 22.3 13 0.00028 20.7 -1.5 13 30-42 27-39 (46)
39 COG3527 AlsD Alpha-acetolactat 20.9 1.2E+02 0.0025 22.8 2.9 28 7-34 22-57 (234)
No 1
>KOG0537|consensus
Probab=99.97 E-value=1.5e-31 Score=180.38 Aligned_cols=86 Identities=44% Similarity=0.755 Sum_probs=81.8
Q ss_pred cCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCCC
Q psy16615 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVPR 83 (110)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 83 (110)
.++.||++||++||+.++|||+|+|+|||||.|+++||||.++|+.+||+|||+.|....||..|++||++|+||.+.+.
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCC
Q psy16615 84 ERTDKP 89 (110)
Q Consensus 84 ~~~~~~ 89 (110)
......
T Consensus 83 ~~~~~~ 88 (124)
T KOG0537|consen 83 ARPVVW 88 (124)
T ss_pred Ccccee
Confidence 877644
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.93 E-value=1.7e-26 Score=142.41 Aligned_cols=75 Identities=39% Similarity=0.652 Sum_probs=69.4
Q ss_pred ccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhc-CeeEEeC
Q psy16615 7 LFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKK-FKVGELV 81 (110)
Q Consensus 7 ~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~-~~IG~l~ 81 (110)
+||++||++|+..++|||+|+|+|||||+|+..||||..+|..++|+|+|..|....|+..+.++|+. |+||.|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999434599999999998 9999984
No 3
>KOG0536|consensus
Probab=99.93 E-value=6.9e-26 Score=152.86 Aligned_cols=78 Identities=40% Similarity=0.547 Sum_probs=73.2
Q ss_pred CCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCC
Q psy16615 5 TKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVP 82 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~ 82 (110)
...+|.+||++|++.+||||+|+|+|||||.|++.||||.+.|+.++|+|+|..|+.+|-+.+-.++|+.++||.+.+
T Consensus 67 ~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 67 PIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 347899999999999999999999999999999999999999999999999999999866788889999999999865
No 4
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.87 E-value=4.5e-22 Score=138.94 Aligned_cols=79 Identities=33% Similarity=0.580 Sum_probs=75.2
Q ss_pred CCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCCC
Q psy16615 5 TKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVPR 83 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 83 (110)
...++.+||.+|++.++|||+|+|+|||||.|+..||||..+|+.++|+|+|..|...+|+..+.++++.++||.+...
T Consensus 49 ~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 49 PKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred cccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998766
No 5
>PLN02252 nitrate reductase [NADPH]
Probab=99.86 E-value=5.1e-22 Score=167.91 Aligned_cols=84 Identities=35% Similarity=0.668 Sum_probs=78.4
Q ss_pred cCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCCC
Q psy16615 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVPR 83 (110)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 83 (110)
..+.||++||++|++.++|||+|+|+|||+|+|+..||||.++|+.++|+|+|+.|..+ |+..|++||++|+||.|.+.
T Consensus 516 ~~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~-Hs~~a~~~L~~~~IG~l~~~ 594 (888)
T PLN02252 516 GSKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELVTT 594 (888)
T ss_pred ccceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhh-hhHHHHHHHHhCcCCccccc
Confidence 45889999999999999999999999999999999999999999999999999999986 99999999999999999877
Q ss_pred CCCCC
Q psy16615 84 ERTDK 88 (110)
Q Consensus 84 ~~~~~ 88 (110)
.....
T Consensus 595 ~~~~~ 599 (888)
T PLN02252 595 GAAAS 599 (888)
T ss_pred ccccc
Confidence 66554
No 6
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.86 E-value=7.7e-22 Score=158.02 Aligned_cols=82 Identities=35% Similarity=0.726 Sum_probs=74.7
Q ss_pred CccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeC
Q psy16615 2 VEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELV 81 (110)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 81 (110)
.++.+.+|++||++|+++++|||+|+|+|||||+|+ .||||. +|+.++|+|+|+.|+.. |+..++++|++|+||++.
T Consensus 20 ~~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~iG~l~ 96 (485)
T PLN03199 20 AEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF-HAPGSQALMKKFYIGDLI 96 (485)
T ss_pred CccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh-cCHHHHHHHHhccccccc
Confidence 356789999999999999999999999999999997 899997 78899999999999986 999999999999999997
Q ss_pred CCCCC
Q psy16615 82 PRERT 86 (110)
Q Consensus 82 ~~~~~ 86 (110)
+++.+
T Consensus 97 ~~~~~ 101 (485)
T PLN03199 97 PESTE 101 (485)
T ss_pred ccccc
Confidence 66544
No 7
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.86 E-value=5.3e-22 Score=160.23 Aligned_cols=78 Identities=27% Similarity=0.555 Sum_probs=72.9
Q ss_pred CCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCCCC
Q psy16615 5 TKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVPRE 84 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~~ 84 (110)
.+.||++|+++|++.++|||+|+|+|||||+|++.||||. +|..++|+|+|+.|+.. |+..+.++|++|+||.+++.+
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~IG~l~~~~ 180 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSF-HAASTWKILQDFYIGDVDNVE 180 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHh-cCHHHHHHHhhCcceecCCcc
Confidence 4589999999999999999999999999999999999997 88999999999999986 999999999999999997643
No 8
>KOG4232|consensus
Probab=99.68 E-value=1.1e-17 Score=130.91 Aligned_cols=83 Identities=24% Similarity=0.553 Sum_probs=74.9
Q ss_pred CCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHH--HHHhhhcCeeEEeCC
Q psy16615 5 TKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSD--ARETMKKFKVGELVP 82 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~--a~~~l~~~~IG~l~~ 82 (110)
.+.+|++++.+|++.++.|++|+| |||+|+|+++||||+.+|..++|+|+|++|.+. |... +.+.|+...+|...+
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~Af-H~~~~~~~~~l~~l~~~~~~p 84 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAF-HPGTAFAYKHLKPLLIGELSP 84 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHh-CCChHHHHHHHHHHHcCCcCc
Confidence 458899999999999999999999 999999999999999999999999999999975 7654 778999999999988
Q ss_pred CCCCCCC
Q psy16615 83 RERTDKP 89 (110)
Q Consensus 83 ~~~~~~~ 89 (110)
+...+..
T Consensus 85 e~~~~~~ 91 (430)
T KOG4232|consen 85 EIPSLDL 91 (430)
T ss_pred ccccccc
Confidence 8776654
No 9
>KOG4576|consensus
Probab=99.59 E-value=5.8e-16 Score=105.33 Aligned_cols=83 Identities=33% Similarity=0.665 Sum_probs=67.6
Q ss_pred ccCCccCHHHHhhhcCC-CCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhh---cCCCHHHHHhhhcCeeE
Q psy16615 3 EETKLFTRKEVKDNSSK-DNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND---IGHSSDARETMKKFKVG 78 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~-~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~IG 78 (110)
+.+++|+.+||++|++. +..||.+...|||||+|+..||||.++++ .||. +-+.|++ .|....++++|+.|+||
T Consensus 77 E~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKill-AAG~-a~dPFWalY~qHnt~eVlElLegyrIG 154 (167)
T KOG4576|consen 77 ESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILL-AAGG-ALDPFWALYAQHNTSEVLELLEGYRIG 154 (167)
T ss_pred hhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeee-ecCC-CcCcHHHHHHHhhHHHHHHHHhhcccc
Confidence 46789999999999876 57999999999999999999999977665 5554 3344544 34567899999999999
Q ss_pred EeCCCCCCC
Q psy16615 79 ELVPRERTD 87 (110)
Q Consensus 79 ~l~~~~~~~ 87 (110)
.|.+.+...
T Consensus 155 ~L~~~dv~~ 163 (167)
T KOG4576|consen 155 ELNPEDVVA 163 (167)
T ss_pred cCChhhccc
Confidence 999887654
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.17 E-value=6.6e-11 Score=72.25 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=56.5
Q ss_pred CCccCHHHHhhhcCC-CCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhh-cCCCHHHHHhhhcCeeEEeCC
Q psy16615 5 TKLFTRKEVKDNSSK-DNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND-IGHSSDARETMKKFKVGELVP 82 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~-~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~-~~Hs~~a~~~l~~~~IG~l~~ 82 (110)
.+.||++||.++|+. ++.+|.++|.||||+.-. .+-+|...=+.-+|+|.|+.|++ ..|..+..+-++ .||.|..
T Consensus 1 mrefTLEELs~ynG~nGpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg~eil~~~P--vVG~L~k 77 (81)
T COG4892 1 MREFTLEELSKYNGENGPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHGMEILTSLP--VVGALIK 77 (81)
T ss_pred CceecHHHHHhhcCCCCCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCchhHHHhcCc--hhheeec
Confidence 378999999999986 479999999999999631 34455555556699999999985 346555444433 7888765
Q ss_pred C
Q psy16615 83 R 83 (110)
Q Consensus 83 ~ 83 (110)
.
T Consensus 78 ~ 78 (81)
T COG4892 78 E 78 (81)
T ss_pred c
Confidence 4
No 11
>KOG1110|consensus
Probab=98.41 E-value=4.3e-07 Score=64.56 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=45.0
Q ss_pred cCCccCHHHHhhhcCCC---CeEEEEcCeEEeccc-CCccCCChHHHhHhhcCCchhHHhhh
Q psy16615 4 ETKLFTRKEVKDNSSKD---NVVIIYDNGVYNVTN-YLTEHPGGEEILLEQNGEDATEVFND 61 (110)
Q Consensus 4 ~~~~~t~~ev~~h~~~~---~~wvii~g~VYDvT~-f~~~HPGG~~~l~~~aG~D~T~~f~~ 61 (110)
.++.||.+||+++++.+ ..++.|+|+|||||. -.-.-|||.- ..+||+|||.....
T Consensus 54 ~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La~ 113 (183)
T KOG1110|consen 54 KVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLAK 113 (183)
T ss_pred cccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHHh
Confidence 45679999999998765 588999999999996 2236789974 45799999998754
No 12
>KOG1108|consensus
Probab=97.59 E-value=4.3e-05 Score=56.63 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCccCHHHHhhhcCCC---CeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhh
Q psy16615 5 TKLFTRKEVKDNSSKD---NVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND 61 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~~---~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~ 61 (110)
...||++||++.|+.. +.++.|=|.|||||.=. .|-|.-.-...+||+|||.+|-.
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk-~hYgsG~sYnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGK-KHYGSGCSYNHFAGRDASRAFVS 117 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCe-eeeCCCCCcccccccccchheec
Confidence 3589999999999754 58999999999999843 44433334678999999999964
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=93.60 E-value=0.043 Score=35.41 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=12.5
Q ss_pred EEEcCeEEecccCCc
Q psy16615 24 IIYDNGVYNVTNYLT 38 (110)
Q Consensus 24 vii~g~VYDvT~f~~ 38 (110)
+..+|+|||||+|+.
T Consensus 59 ~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 59 ACMDGKVYDITEWAT 73 (94)
T ss_pred EEcCceEEehhhhhh
Confidence 457999999999963
No 14
>KOG0720|consensus
Probab=82.37 E-value=0.73 Score=37.51 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.6
Q ss_pred eEEEEcCeEEecccCC
Q psy16615 22 VVIIYDNGVYNVTNYL 37 (110)
Q Consensus 22 ~wvii~g~VYDvT~f~ 37 (110)
.++.-+|+|||+|+|+
T Consensus 379 yy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 379 YYACMDGKVYDITEWA 394 (490)
T ss_pred eeeecCCceEeehhhh
Confidence 4556799999999997
No 15
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.85 E-value=0.29 Score=32.88 Aligned_cols=34 Identities=12% Similarity=0.381 Sum_probs=25.0
Q ss_pred EEecccCCccCCChHHHhHhhcCCchhHHhhhcCCC
Q psy16615 30 VYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65 (110)
Q Consensus 30 VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs 65 (110)
-||+..|+..||.|..++....+++.--.+ ..|+
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~vM~L--m~h~ 98 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKERVMEL--MNHE 98 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHHHHHH--TS-S
T ss_pred hcchHHHHHHChhHHHHHHhcChHHHHHHH--hcCC
Confidence 489999999999999999888887654433 3355
No 16
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=62.89 E-value=5.2 Score=27.14 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.6
Q ss_pred eEEEEcCeEEecc
Q psy16615 22 VVIIYDNGVYNVT 34 (110)
Q Consensus 22 ~wvii~g~VYDvT 34 (110)
+-|.|||++|||+
T Consensus 5 ~~itvng~~y~V~ 17 (130)
T PRK06549 5 FKITIDGKEYLVE 17 (130)
T ss_pred EEEEECCEEEEEE
Confidence 5688999999998
No 17
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=61.29 E-value=1.9 Score=34.81 Aligned_cols=43 Identities=14% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCC
Q psy16615 19 KDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65 (110)
Q Consensus 19 ~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs 65 (110)
.++.+++|-- ||+..|+..||.|..++.+..||+..=.+ ..|+
T Consensus 366 ~d~~~laVAc--~Dige~vr~~P~gr~i~~~lg~K~~vM~L--m~h~ 408 (429)
T cd00256 366 VDPIILAVAC--HDIGEYVRHYPRGKDVVEQLGGKQRVMRL--LNHE 408 (429)
T ss_pred CCcceeehhh--hhHHHHHHHCccHHHHHHHcCcHHHHHHH--hcCC
Confidence 4567777763 99999999999999999999888654333 3355
No 18
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.03 E-value=4.4 Score=31.75 Aligned_cols=20 Identities=20% Similarity=0.612 Sum_probs=14.4
Q ss_pred ecccCCccCCChHHHhHhhcC
Q psy16615 32 NVTNYLTEHPGGEEILLEQNG 52 (110)
Q Consensus 32 DvT~f~~~HPGG~~~l~~~aG 52 (110)
||.-|+ .||||.++|.++.+
T Consensus 270 dI~~w~-~HPGG~KVida~~~ 289 (356)
T COG3424 270 DIEAWV-VHPGGPKVIDAYEE 289 (356)
T ss_pred hhceee-eCCCCchHHHHHHH
Confidence 344443 69999999987765
No 19
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=53.08 E-value=16 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.9
Q ss_pred hhcCCCCeEEEEcCe-EEecccC
Q psy16615 15 DNSSKDNVVIIYDNG-VYNVTNY 36 (110)
Q Consensus 15 ~h~~~~~~wvii~g~-VYDvT~f 36 (110)
...+.+|.||-|||+ |-|+-..
T Consensus 23 ~F~GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 23 EFRGDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred EEEcCCeEEEEECCEEEEEccCc
Confidence 456788999999988 6777543
No 20
>PHA02131 hypothetical protein
Probab=51.99 E-value=13 Score=21.90 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=20.3
Q ss_pred CccCHHHHhhhcCC------------C-CeEEEE-cCeEEecc
Q psy16615 6 KLFTRKEVKDNSSK------------D-NVVIIY-DNGVYNVT 34 (110)
Q Consensus 6 ~~~t~~ev~~h~~~------------~-~~wvii-~g~VYDvT 34 (110)
+.|-++-+++-|+- + .|||.+ +|+|-|+|
T Consensus 2 kiyhpqhiakvngitkvdmirgh~~~g~~c~imfk~~~v~dct 44 (70)
T PHA02131 2 KIYHPQHIAKVNGITKVDMIRGHYRFGISCWIMFKNDQVIDCT 44 (70)
T ss_pred cccchhHhhhhcCceEEEEeccceecceEEEEEEcCCCEEEee
Confidence 34556666665542 2 599987 89999998
No 21
>KOG2759|consensus
Probab=46.75 E-value=4.7 Score=32.67 Aligned_cols=43 Identities=19% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCC
Q psy16615 19 KDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65 (110)
Q Consensus 19 ~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs 65 (110)
.++.|+.|- -.|++.|+..+|.|..++.++.||.. .|+-..|.
T Consensus 379 ~Dp~iL~VA--c~DIge~Vr~yP~gk~vv~k~ggKe~--vM~Llnh~ 421 (442)
T KOG2759|consen 379 NDPIILCVA--CHDIGEYVRHYPEGKAVVEKYGGKER--VMNLLNHE 421 (442)
T ss_pred CCCceeehh--hhhHHHHHHhCchHhHHHHHhchHHH--HHHHhcCC
Confidence 356788776 37999999999999999999999843 34444455
No 22
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=41.46 E-value=12 Score=25.76 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=10.0
Q ss_pred ccCCChHHHhHhhc
Q psy16615 38 TEHPGGEEILLEQN 51 (110)
Q Consensus 38 ~~HPGG~~~l~~~a 51 (110)
--||||.++|....
T Consensus 64 avHPGG~~ILd~v~ 77 (151)
T PF02797_consen 64 AVHPGGRKILDAVE 77 (151)
T ss_dssp EEE-SSHHHHHHHH
T ss_pred eecCChHHHHHHHH
Confidence 47999999887554
No 23
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=41.19 E-value=24 Score=23.37 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.2
Q ss_pred CCeEEEEcCeEEecccCCccCCChH
Q psy16615 20 DNVVIIYDNGVYNVTNYLTEHPGGE 44 (110)
Q Consensus 20 ~~~wvii~g~VYDvT~f~~~HPGG~ 44 (110)
+.++|.|||..|++..=...-|||.
T Consensus 7 G~a~i~vdG~~l~~~~g~~~~~gg~ 31 (119)
T PF10618_consen 7 GTAYIRVDGQQLPVKGGATYNPGGV 31 (119)
T ss_pred EEEEEEECCEEEEccCCeEECCCCe
Confidence 5699999999999998788889885
No 24
>PRK06764 hypothetical protein; Provisional
Probab=40.69 E-value=27 Score=22.30 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.6
Q ss_pred hcCCCCeEEEEcCeEEe
Q psy16615 16 NSSKDNVVIIYDNGVYN 32 (110)
Q Consensus 16 h~~~~~~wvii~g~VYD 32 (110)
.++++...|.++|.+||
T Consensus 80 f~kpg~yvirvngciy~ 96 (105)
T PRK06764 80 FSKPGKYVIRVNGCIYN 96 (105)
T ss_pred ecCCccEEEEEccEEee
Confidence 35667788889999996
No 25
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=37.16 E-value=38 Score=20.10 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=12.8
Q ss_pred CCeEEEEcCeEEecccCC
Q psy16615 20 DNVVIIYDNGVYNVTNYL 37 (110)
Q Consensus 20 ~~~wvii~g~VYDvT~f~ 37 (110)
.+..|.++|++|+|....
T Consensus 65 ~~~ri~~~g~~y~I~~i~ 82 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKSID 82 (95)
T ss_dssp TTEEEEECTEEEEE-S--
T ss_pred cceEEEECCEEEEEEEEC
Confidence 456788999999999843
No 26
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=32.66 E-value=63 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred ccCHHHHhhhcC--------CCCeEEEEcCeEEeccc
Q psy16615 7 LFTRKEVKDNSS--------KDNVVIIYDNGVYNVTN 35 (110)
Q Consensus 7 ~~t~~ev~~h~~--------~~~~wvii~g~VYDvT~ 35 (110)
.+|..||.+|-. -+.=.|+++|++|-+..
T Consensus 20 ~~t~~~Ll~hGdfGiGTf~~LdGEmiilDG~~Yq~~s 56 (232)
T TIGR01252 20 TTTLKELLEHGDFGIGTLNGLDGELIVLDGKAYQIKS 56 (232)
T ss_pred cccHHHHHhCCCceeECccCCceeEEEECCEEEEEcC
Confidence 578899999842 34567999999998864
No 27
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=30.90 E-value=37 Score=26.72 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCCeEEEE-cCeEEecccCC
Q psy16615 19 KDNVVIIY-DNGVYNVTNYL 37 (110)
Q Consensus 19 ~~~~wvii-~g~VYDvT~f~ 37 (110)
.++|-|.+ +|.|||+|+-.
T Consensus 25 ~gp~~vlvr~g~v~dit~~a 44 (379)
T COG3970 25 EGPCPVLVRGGRVFDITSAA 44 (379)
T ss_pred CCCceEEEeCCEEEEecccc
Confidence 35777766 78999999754
No 28
>PF11093 Mitochondr_Som1: Mitochondrial export protein Som1; InterPro: IPR024645 Som1 is a component of the mitochondrial protein export system. Som1 proteins exhibit a highly conserved region and a pattern of cysteine residues []. Stabilisation of Som1 occurs through an interaction between Som1 and Imp1, a peptidase required for proteolytic processing of certain proteins during their transport across the mitochondrial membrane []. This suggests that Som1 represents a third subunit of the Imp1 peptidase complex [].; GO: 0042720 mitochondrial inner membrane peptidase complex
Probab=30.64 E-value=31 Score=21.65 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=15.0
Q ss_pred CCccCCccCHHHHhhh
Q psy16615 1 MVEETKLFTRKEVKDN 16 (110)
Q Consensus 1 ~~~~~~~~t~~ev~~h 16 (110)
|.++.++|+.+||..+
T Consensus 1 MAPP~pV~~~~el~~~ 16 (83)
T PF11093_consen 1 MAPPTPVFSRSELPSQ 16 (83)
T ss_pred CCCCcceEcHHHhHHH
Confidence 8899999999999987
No 29
>PRK14578 elongation factor P; Provisional
Probab=29.52 E-value=44 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.0
Q ss_pred CeEEEEcCeEEecccCCccCCCh
Q psy16615 21 NVVIIYDNGVYNVTNYLTEHPGG 43 (110)
Q Consensus 21 ~~wvii~g~VYDvT~f~~~HPGG 43 (110)
..+|.++|..|-|.+|....||+
T Consensus 10 G~~i~~dg~~~~V~~~~~~kpg~ 32 (187)
T PRK14578 10 GLVIQLDGAPCLLLDVTFQSPSA 32 (187)
T ss_pred CCEEEECCEEEEEEEEEEEcCCC
Confidence 67899999999999998777964
No 30
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=29.21 E-value=49 Score=22.95 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=12.6
Q ss_pred CCeEEEEcCeEEecc
Q psy16615 20 DNVVIIYDNGVYNVT 34 (110)
Q Consensus 20 ~~~wvii~g~VYDvT 34 (110)
..+-|.|||++|+|+
T Consensus 23 ~~~~itvnG~~y~V~ 37 (153)
T PRK05641 23 GKFRVSFEGKTYEVE 37 (153)
T ss_pred ccEEEEECCEEEEEE
Confidence 457789999999887
No 31
>PRK04542 elongation factor P; Provisional
Probab=27.82 E-value=49 Score=23.84 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.9
Q ss_pred CeEEEEcCeEEecccCCccCCCh
Q psy16615 21 NVVIIYDNGVYNVTNYLTEHPGG 43 (110)
Q Consensus 21 ~~wvii~g~VYDvT~f~~~HPGG 43 (110)
..+|.++|..|-|.+|....|||
T Consensus 10 G~~i~~~g~~~~V~~~~h~kp~G 32 (189)
T PRK04542 10 GMVVEYNGKLLLVKDIDRQSPSG 32 (189)
T ss_pred CCEEEECCEEEEEEEEEEECCCC
Confidence 57899999999999998888953
No 32
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=27.07 E-value=55 Score=18.69 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.2
Q ss_pred CeEEEEcCeEEecccCCccCCCh
Q psy16615 21 NVVIIYDNGVYNVTNYLTEHPGG 43 (110)
Q Consensus 21 ~~wvii~g~VYDvT~f~~~HPGG 43 (110)
...|.++|..|=|.++...+||.
T Consensus 8 G~~i~~~g~~~~V~~~~~~k~gk 30 (58)
T PF08207_consen 8 GMVIEIDGEPYVVLDFQHVKPGK 30 (58)
T ss_dssp TSEEEETTEEEEEEEEEEECCTT
T ss_pred CCEEEECCEEEEEEEEEEECCCC
Confidence 56788999999999997777764
No 33
>PHA02671 hypothetical protein; Provisional
Probab=26.82 E-value=67 Score=23.06 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=22.8
Q ss_pred CccCHHHHhhhcCCCCeEEEEcCeEEecccC
Q psy16615 6 KLFTRKEVKDNSSKDNVVIIYDNGVYNVTNY 36 (110)
Q Consensus 6 ~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f 36 (110)
..++..++.+ .-.+|||+.||.+.-+|+-
T Consensus 48 ~~v~~~~i~~--~l~dCYia~nG~il~CS~~ 76 (179)
T PHA02671 48 TSLPLTQVNM--LMSDCYFAVNGNLLPCTED 76 (179)
T ss_pred eeccHHHHhh--hhhceEEEECCEEEecCcc
Confidence 3456677766 5578999999999999974
No 34
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=26.82 E-value=43 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=20.7
Q ss_pred ccCHHHHhhhcC--------CCCeEEEEcCeEEeccc
Q psy16615 7 LFTRKEVKDNSS--------KDNVVIIYDNGVYNVTN 35 (110)
Q Consensus 7 ~~t~~ev~~h~~--------~~~~wvii~g~VYDvT~ 35 (110)
.+|.+||.+|-. -+.=.|+++|++|-++.
T Consensus 18 ~~t~~eLl~hGdfGiGTf~~LDGEmiilDG~~Yq~~~ 54 (220)
T PF03306_consen 18 TITIGELLKHGDFGIGTFDGLDGEMIILDGKAYQARA 54 (220)
T ss_dssp -EEHHHHHTT-SSEEEEEGGGEEEEEEETTEEEEE-T
T ss_pred cccHHHHHhCCCcceeccCCcceeEEEECCEEEEEcC
Confidence 468889999843 24568899999998765
No 35
>PF12382 Peptidase_A2E: Retrotransposon peptidase; InterPro: IPR024648 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This entry represents a small family of fungal retroviral aspartyl peptidases.
Probab=25.73 E-value=41 Score=22.19 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCccCHHHHhhhcCCCCeEE--EEcCeEE
Q psy16615 5 TKLFTRKEVKDNSSKDNVVI--IYDNGVY 31 (110)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wv--ii~g~VY 31 (110)
..++|.+.|..|.-+...|. +|-|.||
T Consensus 58 ~niiteetvrahklptrpw~~sviyggvy 86 (137)
T PF12382_consen 58 VNIITEETVRAHKLPTRPWSQSVIYGGVY 86 (137)
T ss_pred eeeeehhhhhhccCCCCcchhheEecccc
Confidence 46788899999998888886 6677777
No 36
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=24.38 E-value=32 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=23.3
Q ss_pred cCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCC
Q psy16615 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPG 42 (110)
Q Consensus 8 ~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPG 42 (110)
.+..+|++ +..|.++|..|=|.++....||
T Consensus 7 ~~~~~irk-----G~~i~~~g~p~~V~e~~~~kpG 36 (130)
T TIGR00037 7 VQVSALRV-----GGYVVIDGRPCKIVDISTSKPG 36 (130)
T ss_pred ccHHHccC-----CCEEEECCEEEEEEEEEecCCC
Confidence 44455544 5789999999999999777788
No 37
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=24.37 E-value=18 Score=22.36 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=15.5
Q ss_pred EEecccCCccCCChHHHhHh
Q psy16615 30 VYNVTNYLTEHPGGEEILLE 49 (110)
Q Consensus 30 VYDvT~f~~~HPGG~~~l~~ 49 (110)
|.|++=|++-||.-.+.|..
T Consensus 15 ~~dl~LyLDTHP~d~~Al~~ 34 (78)
T PF12652_consen 15 VVDLNLYLDTHPDDQEALEY 34 (78)
T ss_pred HHHHHHHhcCCCCcHHHHHH
Confidence 46788899999998766543
No 38
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=22.27 E-value=13 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=9.2
Q ss_pred EEecccCCccCCC
Q psy16615 30 VYNVTNYLTEHPG 42 (110)
Q Consensus 30 VYDvT~f~~~HPG 42 (110)
.=+++.|+..||+
T Consensus 27 ~~~L~~WL~~~P~ 39 (46)
T PF07533_consen 27 LKELEEWLEEHPG 39 (46)
T ss_dssp CCCHHHHHHH-TT
T ss_pred HHHHHHHHHHCcC
Confidence 3467888889987
No 39
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.86 E-value=1.2e+02 Score=22.78 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=21.6
Q ss_pred ccCHHHHhhhc--------CCCCeEEEEcCeEEecc
Q psy16615 7 LFTRKEVKDNS--------SKDNVVIIYDNGVYNVT 34 (110)
Q Consensus 7 ~~t~~ev~~h~--------~~~~~wvii~g~VYDvT 34 (110)
..|..|+-+|- +.+.-.|++||++|-.-
T Consensus 22 t~ti~ell~hGd~GigTl~~~dGEli~ldg~ay~~~ 57 (234)
T COG3527 22 TATIKELLEHGDLGIGTLDSLDGELIILDGKAYQAR 57 (234)
T ss_pred ceeHHHHhhcCCcceeeeccCCceEEEEcceEEEec
Confidence 46788998883 34567899999999664
Done!