Query psy16615
Match_columns 110
No_of_seqs 196 out of 1107
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 17:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cyo_A Cytochrome B5; electron 100.0 1.3E-32 4.6E-37 176.4 7.6 87 3-89 2-88 (93)
2 1hko_A Cytochrome B5; electron 100.0 5.7E-32 1.9E-36 176.7 9.3 89 2-90 5-93 (104)
3 3ner_A Cytochrome B5 type B; h 100.0 3E-32 1E-36 174.5 7.5 85 2-86 6-90 (92)
4 3lf5_A Cytochrome B5 reductase 100.0 2.8E-32 9.7E-37 173.4 5.3 84 1-84 1-84 (88)
5 2ibj_A Cytochrome B5, CYTB5; F 100.0 1.1E-31 3.8E-36 170.5 6.8 82 3-84 4-85 (88)
6 1cxy_A Cytochrome B5; helix, b 100.0 2.8E-30 9.5E-35 164.7 7.4 80 3-82 5-88 (90)
7 1x3x_A Cytochrome B5; hemoprot 100.0 5E-30 1.7E-34 160.9 5.6 77 4-81 2-82 (82)
8 2keo_A Probable E3 ubiquitin-p 100.0 2.2E-31 7.5E-36 175.9 -2.1 87 1-87 19-105 (112)
9 1mj4_A Sulfite oxidase; cytoch 100.0 2.1E-29 7.1E-34 158.2 5.8 77 3-80 2-82 (82)
10 1sox_A Sulfite oxidase; oxidor 99.9 2E-23 6.7E-28 165.4 10.7 82 3-85 2-87 (466)
11 1kbi_A Cytochrome B2, L-LCR; f 99.9 2.2E-23 7.4E-28 166.7 7.8 83 3-86 6-90 (511)
12 1j03_A Putative steroid bindin 99.8 9.7E-20 3.3E-24 118.3 5.0 59 6-66 3-65 (102)
13 1ho8_A Vacuolar ATP synthase s 43.9 1.7 6E-05 34.4 -2.5 34 30-65 426-459 (480)
14 1xv2_A ALDC, hypothetical prot 25.3 32 0.0011 24.6 1.8 29 7-35 25-61 (237)
15 3fpn_A Geobacillus stearotherm 20.3 84 0.0029 19.8 2.9 25 13-37 40-64 (119)
16 2kca_A Bacteriophage SPP1 comp 20.1 66 0.0023 19.1 2.3 20 20-39 70-90 (109)
No 1
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.97 E-value=1.3e-32 Score=176.45 Aligned_cols=87 Identities=45% Similarity=0.774 Sum_probs=81.8
Q ss_pred ccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCC
Q psy16615 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVP 82 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~ 82 (110)
..++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++||..|+++|+.|+||.|.+
T Consensus 2 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~ 81 (93)
T 1cyo_A 2 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 81 (93)
T ss_dssp CSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEECG
T ss_pred CCCCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHhCeeEEecC
Confidence 46789999999999999999999999999999999999999999999999999999998889999999999999999998
Q ss_pred CCCCCCC
Q psy16615 83 RERTDKP 89 (110)
Q Consensus 83 ~~~~~~~ 89 (110)
.+..+.+
T Consensus 82 ~~~~~~~ 88 (93)
T 1cyo_A 82 DDRSKIT 88 (93)
T ss_dssp GGGGGCC
T ss_pred cccccCC
Confidence 7766655
No 2
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.97 E-value=5.7e-32 Score=176.72 Aligned_cols=89 Identities=45% Similarity=0.765 Sum_probs=83.6
Q ss_pred CccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeC
Q psy16615 2 VEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELV 81 (110)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 81 (110)
.++++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++||..|+++|+.|+||.|.
T Consensus 5 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~ 84 (104)
T 1hko_A 5 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH 84 (104)
T ss_dssp CCCCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCCHHHHHHHTTTEEEEEC
T ss_pred cccCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHcCeeEEEC
Confidence 46788999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCCCCCCCC
Q psy16615 82 PRERTDKPK 90 (110)
Q Consensus 82 ~~~~~~~~~ 90 (110)
+.+..+.++
T Consensus 85 ~~~~~~~~~ 93 (104)
T 1hko_A 85 PDDRSKITK 93 (104)
T ss_dssp TTSSTTTSS
T ss_pred CcccccCCC
Confidence 888776664
No 3
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.97 E-value=3e-32 Score=174.54 Aligned_cols=85 Identities=42% Similarity=0.765 Sum_probs=80.2
Q ss_pred CccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeC
Q psy16615 2 VEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELV 81 (110)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 81 (110)
.++++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++||..|+++|+.|+||.|.
T Consensus 6 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~ 85 (92)
T 3ner_A 6 ETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIH 85 (92)
T ss_dssp CCCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEEC
T ss_pred CCCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999878999999999999999999
Q ss_pred CCCCC
Q psy16615 82 PRERT 86 (110)
Q Consensus 82 ~~~~~ 86 (110)
+++..
T Consensus 86 ~~~~~ 90 (92)
T 3ner_A 86 PSDLK 90 (92)
T ss_dssp GGGSC
T ss_pred hHhcC
Confidence 87754
No 4
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.97 E-value=2.8e-32 Score=173.38 Aligned_cols=84 Identities=31% Similarity=0.498 Sum_probs=79.1
Q ss_pred CCccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEe
Q psy16615 1 MVEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGEL 80 (110)
Q Consensus 1 ~~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l 80 (110)
|..+++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.+||+..++++|++|+||.+
T Consensus 1 ~~~~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~~~~~~~L~~~~IG~l 80 (88)
T 3lf5_A 1 MKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRM 80 (88)
T ss_dssp -CCSSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTTCCHHHHTGGGEEEEE
T ss_pred CCCCCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCCcHHHHHHHHcCeeEEe
Confidence 77899999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CCCC
Q psy16615 81 VPRE 84 (110)
Q Consensus 81 ~~~~ 84 (110)
.+.+
T Consensus 81 ~~~~ 84 (88)
T 3lf5_A 81 AIKP 84 (88)
T ss_dssp CCCG
T ss_pred CCCc
Confidence 8764
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.97 E-value=1.1e-31 Score=170.48 Aligned_cols=82 Identities=62% Similarity=0.977 Sum_probs=77.9
Q ss_pred ccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEeCC
Q psy16615 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGELVP 82 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~ 82 (110)
++++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++|+..|+++|+.|+||.|.+
T Consensus 4 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~ 83 (88)
T 2ibj_A 4 EDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVA 83 (88)
T ss_dssp CCCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCCHHHHHHHGGGEEEEECG
T ss_pred ccCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCCHHHHHHHHcCceEEeCc
Confidence 46789999999999999999999999999999999999999999999999999999998789999999999999999986
Q ss_pred CC
Q psy16615 83 RE 84 (110)
Q Consensus 83 ~~ 84 (110)
.+
T Consensus 84 ~~ 85 (88)
T 2ibj_A 84 EE 85 (88)
T ss_dssp GG
T ss_pred cc
Confidence 55
No 6
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.96 E-value=2.8e-30 Score=164.70 Aligned_cols=80 Identities=28% Similarity=0.495 Sum_probs=73.4
Q ss_pred ccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhh----hcCCCHHHHHhhhcCeeE
Q psy16615 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFN----DIGHSSDARETMKKFKVG 78 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~----~~~Hs~~a~~~l~~~~IG 78 (110)
...+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|. ...||..|+++|+.|+||
T Consensus 5 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~~IG 84 (90)
T 1cxy_A 5 ATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIG 84 (90)
T ss_dssp -CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEE
T ss_pred ccCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhCcee
Confidence 3457899999999999999999999999999999999999999999999999999999 467999999999999999
Q ss_pred EeCC
Q psy16615 79 ELVP 82 (110)
Q Consensus 79 ~l~~ 82 (110)
.|.+
T Consensus 85 ~l~~ 88 (90)
T 1cxy_A 85 TLEE 88 (90)
T ss_dssp EC--
T ss_pred EeCC
Confidence 9864
No 7
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.96 E-value=5e-30 Score=160.94 Aligned_cols=77 Identities=30% Similarity=0.555 Sum_probs=73.2
Q ss_pred cCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHH--hhhcC--CCHHHHHhhhcCeeEE
Q psy16615 4 ETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEV--FNDIG--HSSDARETMKKFKVGE 79 (110)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~--f~~~~--Hs~~a~~~l~~~~IG~ 79 (110)
..+.||++||++|++.++|||+|+|+|||||+|+..|||| .+|+.++|+|+|+. |+..+ ||..|+++|++|+||.
T Consensus 2 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h~~hs~~a~~~L~~~~IG~ 80 (82)
T 1x3x_A 2 GDKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGK 80 (82)
T ss_dssp CSCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHHHHTHHHHHHHHHHHEEEE
T ss_pred CCCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhcccccchHHHHHHHHhCcceE
Confidence 4688999999999999999999999999999999999999 99999999999999 99987 8999999999999999
Q ss_pred eC
Q psy16615 80 LV 81 (110)
Q Consensus 80 l~ 81 (110)
|.
T Consensus 81 l~ 82 (82)
T 1x3x_A 81 VK 82 (82)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 8
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.96 E-value=2.2e-31 Score=175.91 Aligned_cols=87 Identities=21% Similarity=0.366 Sum_probs=79.2
Q ss_pred CCccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHHHhhhcCeeEEe
Q psy16615 1 MVEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFKVGEL 80 (110)
Q Consensus 1 ~~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l 80 (110)
|.++++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++||..|+++|+.|+||.+
T Consensus 19 m~~~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l 98 (112)
T 2keo_A 19 NNEKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCVGQY 98 (112)
T ss_dssp --CCCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHSTTGGGTHHHHEEEEE
T ss_pred CCCCCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCHHHHHHHHhCceEee
Confidence 45678999999999999999999999999999999999999999999999999999999986799999999999999999
Q ss_pred CCCCCCC
Q psy16615 81 VPRERTD 87 (110)
Q Consensus 81 ~~~~~~~ 87 (110)
.+.+.+.
T Consensus 99 ~~~e~~~ 105 (112)
T 2keo_A 99 LEPDQEG 105 (112)
T ss_dssp CCHHHHS
T ss_pred CCccccc
Confidence 8665443
No 9
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.96 E-value=2.1e-29 Score=158.15 Aligned_cols=77 Identities=31% Similarity=0.607 Sum_probs=69.2
Q ss_pred ccCCccCHHHHhhhcCCCC-eEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhh---cCCCHHHHHhhhcCeeE
Q psy16615 3 EETKLFTRKEVKDNSSKDN-VVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND---IGHSSDARETMKKFKVG 78 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~-~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~IG 78 (110)
++++.||++||++|++.++ |||+|+|+|||||+|+..||||...|+.++|+| |+.|.. .+||..|+++|++|+||
T Consensus 2 ~~~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~~f~~~~~~~hs~~a~~~L~~~~IG 80 (82)
T 1mj4_A 2 ESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LEPFWALYAVHNQSHVRELLAQYKIG 80 (82)
T ss_dssp -CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SHHHHTTCGGGCSHHHHHHHHTTEEE
T ss_pred CCCCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hHHHHhhccccCcHHHHHHHHhCcce
Confidence 4678999999999999987 999999999999999999999988888999999 678875 46999999999999999
Q ss_pred Ee
Q psy16615 79 EL 80 (110)
Q Consensus 79 ~l 80 (110)
.|
T Consensus 81 ~l 82 (82)
T 1mj4_A 81 EL 82 (82)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 10
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.90 E-value=2e-23 Score=165.42 Aligned_cols=82 Identities=30% Similarity=0.514 Sum_probs=75.4
Q ss_pred ccCCccCHHHHhhhcCCCC-eEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhh---cCCCHHHHHhhhcCeeE
Q psy16615 3 EETKLFTRKEVKDNSSKDN-VVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND---IGHSSDARETMKKFKVG 78 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~-~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~IG 78 (110)
.+++.||++||++|++.++ |||+|+|+|||||+|+..||||.++|+.++|+| |+.|.. .+||..|+++|++|+||
T Consensus 2 ~~~~~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~f~~~~~~~Hs~~a~~~L~~~~IG 80 (466)
T 1sox_A 2 PSYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEPFWALYAVHGEPHVLELLQQYKVG 80 (466)
T ss_dssp -CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHHHHHHSGGGGSHHHHHHHHTTEEE
T ss_pred CCCCeeCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-cccccccccccCCHHHHHHHHhCceE
Confidence 4678999999999999998 999999999999999999999999999999999 999975 46999999999999999
Q ss_pred EeCCCCC
Q psy16615 79 ELVPRER 85 (110)
Q Consensus 79 ~l~~~~~ 85 (110)
.|.+.+.
T Consensus 81 ~l~~~~~ 87 (466)
T 1sox_A 81 ELSPDEA 87 (466)
T ss_dssp EECCCCC
T ss_pred Eeccccc
Confidence 9987654
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.89 E-value=2.2e-23 Score=166.67 Aligned_cols=83 Identities=23% Similarity=0.483 Sum_probs=74.7
Q ss_pred ccCCccCHHHHhhhcCCCCeEEEEcCeEEecccCCccCCChHHHhHhhcCCchhHHhhhcCCCHHHH-Hhh-hcCeeEEe
Q psy16615 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDAR-ETM-KKFKVGEL 80 (110)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~-~~l-~~~~IG~l 80 (110)
...+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.+ |+..+. ++| +.|+||.+
T Consensus 6 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~~~~~~~l~~~~~iG~l 84 (511)
T 1kbi_A 6 MNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAPNVIDKYIAPEKKLGPL 84 (511)
T ss_dssp SCSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG-SCTTHHHHHSCGGGEEEEB
T ss_pred CCCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhc-CCHHHHHHhhccccEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999988 776654 555 78999999
Q ss_pred CCCCCC
Q psy16615 81 VPRERT 86 (110)
Q Consensus 81 ~~~~~~ 86 (110)
.+.+..
T Consensus 85 ~~~~~~ 90 (511)
T 1kbi_A 85 QGSMPP 90 (511)
T ss_dssp CSCCCT
T ss_pred cCCccc
Confidence 877654
No 12
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.78 E-value=9.7e-20 Score=118.27 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=53.1
Q ss_pred CccCHHHHhhhcCCC---CeEEEEcCeEEecccCCc-cCCChHHHhHhhcCCchhHHhhhcCCCH
Q psy16615 6 KLFTRKEVKDNSSKD---NVVIIYDNGVYNVTNYLT-EHPGGEEILLEQNGEDATEVFNDIGHSS 66 (110)
Q Consensus 6 ~~~t~~ev~~h~~~~---~~wvii~g~VYDvT~f~~-~HPGG~~~l~~~aG~D~T~~f~~~~Hs~ 66 (110)
+.||++||++|++.+ +|||+|+|+|||||+|.. .||||. +..+||+|||+.|....|+.
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~f~~~~~~~ 65 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGKMSKNE 65 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHHHHHTCCCS
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHHHHHcCCCh
Confidence 679999999999876 799999999999999976 799997 45899999999999887764
No 13
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=43.91 E-value=1.7 Score=34.41 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=26.7
Q ss_pred EEecccCCccCCChHHHhHhhcCCchhHHhhhcCCC
Q psy16615 30 VYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65 (110)
Q Consensus 30 VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs 65 (110)
-+|+..|++.||.|..++.+..||+.- +.-..|.
T Consensus 426 c~Digefvr~~P~gr~i~~~lg~K~~V--M~Lm~h~ 459 (480)
T 1ho8_A 426 LNDITHVVELLPESIDVLDKTGGKADI--MELLNHS 459 (480)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHSHHHHH--HHHTSCS
T ss_pred cccHHHHHHHCcchhHHHHHcCcHHHH--HHHhcCC
Confidence 389999999999999999999887543 4433465
No 14
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=25.27 E-value=32 Score=24.55 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.5
Q ss_pred ccCHHHHhhhcC--------CCCeEEEEcCeEEeccc
Q psy16615 7 LFTRKEVKDNSS--------KDNVVIIYDNGVYNVTN 35 (110)
Q Consensus 7 ~~t~~ev~~h~~--------~~~~wvii~g~VYDvT~ 35 (110)
.+|..||.+|-. -+.=.|+++|++|-+..
T Consensus 25 ~~ti~eLl~hGdfGiGTf~~LDGEmiilDG~~Yq~~~ 61 (237)
T 1xv2_A 25 TATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANE 61 (237)
T ss_dssp CEEHHHHHTTCSEEEEEEGGGEEEEEEETTEEEEECT
T ss_pred cccHHHHHhCCCceEecccCCceeEEEECCEEEEEcC
Confidence 578899999932 24567899999998865
No 15
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=20.31 E-value=84 Score=19.82 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.4
Q ss_pred HhhhcCCCCeEEEEcCeEEecccCC
Q psy16615 13 VKDNSSKDNVVIIYDNGVYNVTNYL 37 (110)
Q Consensus 13 v~~h~~~~~~wvii~g~VYDvT~f~ 37 (110)
++.....+=.-+.|||.+|++.++.
T Consensus 40 l~~l~~~Gf~RvrvDGe~~~l~~~~ 64 (119)
T 3fpn_A 40 LEDIRKQGYVRVRIDREMRELTGDI 64 (119)
T ss_dssp HHHHHHTTCCEEEETTEEEETTSCC
T ss_pred HHHHHhCCCeEEEECCEEEecCCcc
Confidence 3444445556788999999999976
No 16
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=20.07 E-value=66 Score=19.08 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCeEEEEcCeEEecccC-Ccc
Q psy16615 20 DNVVIIYDNGVYNVTNY-LTE 39 (110)
Q Consensus 20 ~~~wvii~g~VYDvT~f-~~~ 39 (110)
.+..|.++|++||+... .+.
T Consensus 70 ~~~ri~~~g~~y~I~~v~~~~ 90 (109)
T 2kca_A 70 KKMRVIYRGKIVTFIGDPVDL 90 (109)
T ss_dssp SSEEEEETTEEEEEEEEEEEC
T ss_pred CccEEEECCEEEEEEEeccCc
Confidence 35678899999999976 533
Done!