RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16615
(110 letters)
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding
domain. This family includes heme binding domains from
a diverse range of proteins. This family also includes
proteins that bind to steroids. The family includes
progesterone receptors. Many members of this subfamily
are membrane anchored by an N-terminal transmembrane
alpha helix. This family also includes a domain in some
chitin synthases. There is no known ligand for this
domain in the chitin synthases.
Length = 74
Score = 90.3 bits (225), Expect = 2e-25
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 8 FTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSD 67
FT +EVK ++ + I+ + VY+VT +L +HPGGE+++L G+DATE F D HS
Sbjct: 1 FTLEEVKKHNKDGDCWIVINGKVYDVTRFLKDHPGGEDVILSAAGKDATEAFEDAIHSEA 60
Query: 68 ARETMKKFKVGELV 81
AR+ ++K++VGEL
Sbjct: 61 ARKLLEKYRVGELD 74
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 76.6 bits (189), Expect = 8e-18
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 5 TKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGH 64
+K +T EV+ ++S+D+ I+ VY+ T +L +HPGG + +L G D TE F+ I H
Sbjct: 517 SKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-H 575
Query: 65 SSDARETMKKFKVGELVPRERTDKPKTNASNESSSEGGSFKL 106
S A++ ++ +++GELV + +S+ S+ + L
Sbjct: 576 SDKAKKMLEDYRIGELVTTG-AAASSSASSHPLSAISTASAL 616
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy
production and conversion / Lipid metabolism].
Length = 164
Score = 71.0 bits (174), Expect = 7e-17
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 2 VEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFND 61
E K T +EV ++ ++ I+ + VY+V+ +L EHPGGE+I+ + G+DAT+ FN
Sbjct: 46 DESPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNF 105
Query: 62 IGHSSDARETMKKFKVGELV-PRERTDKPKTN 92
+ HS +K V ++ P E KT
Sbjct: 106 LHHSHQIGNLLKDVYVDQVHRPEEELPLFKTA 137
>gnl|CDD|178740 PLN03199, PLN03199, delta6-acyl-lipid desaturase-like protein;
Provisional.
Length = 485
Score = 63.5 bits (154), Expect = 4e-13
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 1 MVEETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFN 60
+ E+ + + +EVK ++S D+ II+ N VY+V+N+ +HPGG ++ G+D T++F
Sbjct: 19 LAEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNW-HDHPGG-AVIFTHAGDDMTDIFA 76
Query: 61 DIGHSSDARETMKKFKVGELVPRERTDK 88
H+ ++ MKKF +G+L+P K
Sbjct: 77 AF-HAPGSQALMKKFYIGDLIPESTEHK 103
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional.
Length = 526
Score = 42.8 bits (100), Expect = 7e-06
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 3 EETKLFTRKEVKDNSSKDNVVIIYDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
+++K EV ++ ++ I+ N VY+V+++ EHPGG ++ G D T+ F+
Sbjct: 101 KKSKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGG-SVISTYFGRDGTDAFSSF 159
Query: 63 GHSSDARETMKKFKVGELVPRERT 86
H++ + ++ F +G++ E T
Sbjct: 160 -HAASTWKILQDFYIGDVDNVEPT 182
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 27.7 bits (62), Expect = 1.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 18 SKDNVVIIYDNGVYNVTNY-LTEHPGGEEILLE 49
D +++I +G Y TN+ LT H I+LE
Sbjct: 694 GDDKILVILQDGDYYTTNFELTNHYEPNIIVLE 726
>gnl|CDD|236504 PRK09418, PRK09418, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 780
Score = 27.4 bits (60), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 26 YDNGVYNVTNYLTEHPGGEEILLEQNGEDATEVFNDI 62
Y+ G+ N + YLTE PG + +L+ + + +VFN +
Sbjct: 261 YNVGMENASYYLTEVPGVDAVLMGHSHTEVKDVFNGV 297
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 26.7 bits (59), Expect = 2.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 19 KDNVVIIYDNGVYNVT 34
K+ +I+ DNGVY +T
Sbjct: 103 KNLTIIVMDNGVYQIT 118
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
Length = 681
Score = 26.7 bits (59), Expect = 3.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 30 VYNVTNYLTEHPGGEEILLEQNGEDATEVFNDIGHS 65
+YNV NY G +LL +D +F++ GH+
Sbjct: 443 IYNVCNYQKPAAGQPALLL---WDDVITLFHEFGHT 475
>gnl|CDD|193446 pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this
family are part of the cupin superfamily. This family
includes the transcriptional activator ChrR.
Length = 91
Score = 25.6 bits (57), Expect = 3.5
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 40 HPGGEEIL-LEQNGEDATEVF 59
HPGGEEIL LE D +
Sbjct: 42 HPGGEEILVLEGVFSDEHGDY 62
>gnl|CDD|130147 TIGR01075, uvrD, DNA helicase II. Designed to identify uvrD
members of the uvrD/rep subfamily [DNA metabolism, DNA
replication, recombination, and repair].
Length = 715
Score = 26.3 bits (58), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 30 VYNVTNYLTEHPGGEEILLEQN 51
V N+ +L + PG E I LEQN
Sbjct: 256 VENIQKFLKDFPGAETIRLEQN 277
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 25.8 bits (57), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 33 VTNYLTEHPGGEEILLEQNGEDATEVFNDIGHSSDARETMKKFK 76
V L E P E + E GE T +F + S + K FK
Sbjct: 317 VKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFK 360
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme,
C-terminal TPP binding domain.
Length = 151
Score = 25.2 bits (56), Expect = 6.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 22 VVIIYDNGVYNVTNYLTEHPGGE 44
V++ +NG Y +T GG
Sbjct: 76 TVVVLNNGGYGMTRGQQTPFGGG 98
>gnl|CDD|223185 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid
transport and metabolism].
Length = 256
Score = 25.2 bits (56), Expect = 7.3
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 51 NGEDATE-VFNDIGHSSDARETMK 73
N E A E VF DI SS+ RETM
Sbjct: 40 NEEGADELVFLDITASSEGRETML 63
>gnl|CDD|234996 PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit
HisF; Provisional.
Length = 253
Score = 25.0 bits (56), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 58 VFNDIGHSSDARETMK 73
VF DI SS+ R+TM
Sbjct: 48 VFLDITASSEGRDTML 63
>gnl|CDD|217494 pfam03325, Herpes_PAP, Herpesvirus polymerase accessory protein.
The same proteins are also known as polymerase
processivity factors.
Length = 268
Score = 25.3 bits (55), Expect = 8.3
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 22 VVIIYDNGVYNVTNYLTEHP-GGEEILLEQNG--EDATEVFNDIGHSSDARETMKKFKVG 78
+ + NG++ V N+LTE P + E+NG +D V N +DA KK
Sbjct: 137 LYVSSKNGLFTVENFLTEEPFQRGDPRFERNGKQDDGLAVANSGESHNDAEPVPKK---H 193
Query: 79 ELVPRERTDKPKTNASNESSSEGGSFK 105
E R K + + +G + K
Sbjct: 194 ERANR------KKGDGDHKNEDGSNSK 214
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.128 0.344
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,275,458
Number of extensions: 443356
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 34
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.1 bits)