Query psy16618
Match_columns 51
No_of_seqs 58 out of 60
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:30:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kwu_A MUNC13-1; calcium bindi 96.5 0.0085 2.9E-07 34.7 5.8 43 1-45 106-148 (148)
2 2dmh_A Myoferlin; beta-sandwic 96.2 0.0082 2.8E-07 34.4 4.4 46 1-47 88-136 (140)
3 3b7y_A E3 ubiquitin-protein li 95.9 0.012 3.9E-07 34.3 4.2 44 1-44 104-153 (153)
4 1wfj_A Putative elicitor-respo 95.5 0.012 4.2E-07 33.5 3.1 44 1-47 89-133 (136)
5 2ep6_A MCTP2 protein; beta san 95.4 0.027 9.3E-07 32.1 4.3 42 1-44 91-132 (133)
6 3m7f_B E3 ubiquitin-protein li 95.3 0.037 1.3E-06 33.2 5.0 46 1-46 92-143 (176)
7 2r83_A Synaptotagmin-1; C2A-C2 94.7 0.094 3.2E-06 33.1 5.8 47 1-47 103-150 (284)
8 3pyc_A E3 ubiquitin-protein li 93.9 0.046 1.6E-06 31.1 2.8 42 1-42 87-131 (132)
9 1rlw_A Phospholipase A2, CALB 92.7 0.14 4.9E-06 28.5 3.6 25 1-25 87-111 (126)
10 2chd_A Rabphilin-3A, exophilin 89.2 0.29 9.8E-06 27.9 2.6 26 1-26 116-141 (142)
11 1gmi_A Protein kinase C, epsil 89.1 0.46 1.6E-05 27.1 3.4 39 1-46 95-135 (136)
12 2nq3_A Itchy homolog E3 ubiqui 87.3 0.18 6.2E-06 30.9 0.9 47 1-47 113-164 (173)
13 2fk9_A Protein kinase C, ETA t 86.1 0.59 2E-05 28.6 2.8 36 1-43 117-156 (157)
14 1dqv_A Synaptotagmin III; beta 84.3 0.92 3.1E-05 29.1 3.2 47 1-47 104-152 (296)
15 3l9b_A Otoferlin; C2-domain, b 84.3 0.78 2.7E-05 28.9 2.8 45 1-46 98-142 (144)
16 3bxj_A RAS GTPase-activating p 84.1 0.24 8.4E-06 34.8 0.4 44 1-44 92-157 (483)
17 1wfm_A Synaptotagmin XIII; C2 77.6 1.9 6.5E-05 24.6 2.7 28 1-28 108-135 (138)
18 1rsy_A Synaptotagmin I; calciu 75.7 2.2 7.4E-05 24.6 2.6 26 1-26 126-151 (152)
19 2b3r_A Phosphatidylinositol-4- 75.3 2.1 7.1E-05 24.4 2.4 28 1-28 106-133 (134)
20 3f04_A Synaptotagmin-1; C2A, c 74.5 2.5 8.5E-05 23.9 2.6 25 1-25 118-142 (143)
21 1rh8_A Piccolo protein; beta-s 69.3 3 0.0001 23.5 2.1 27 1-27 114-140 (142)
22 2dmg_A KIAA1228 protein; beta- 65.2 2.2 7.5E-05 24.1 1.0 28 1-28 111-138 (142)
23 1ugk_A Synaptotagmin IV, KIAA1 64.8 7.6 0.00026 21.7 3.2 28 1-28 108-136 (138)
24 2d8k_A Synaptotagmin VII; exoc 64.2 3.8 0.00013 23.1 1.9 28 1-28 111-138 (141)
25 3fdw_A Synaptotagmin-like prot 62.8 1.8 6.2E-05 24.8 0.3 28 1-28 110-137 (148)
26 2q3x_A Regulating synaptic mem 58.1 4.5 0.00015 24.0 1.5 28 1-28 115-142 (171)
27 1v27_A Regulating synaptic mem 55.0 15 0.00053 20.2 3.4 27 1-28 110-136 (141)
28 3jzy_A Intersectin 2; C2 domai 54.1 6.3 0.00021 26.7 1.8 39 1-44 466-508 (510)
29 1djx_A PLC-D1, phosphoinositid 52.6 12 0.00042 27.3 3.3 40 1-43 584-623 (624)
30 2enp_A B/K protein; C2 type 1, 51.4 11 0.00037 21.3 2.3 24 1-24 117-140 (147)
31 3ohm_B 1-phosphatidylinositol- 45.4 20 0.00067 27.9 3.6 41 1-44 805-845 (885)
32 3qr0_A Phospholipase C-beta (P 44.0 22 0.00074 27.3 3.6 41 1-44 731-771 (816)
33 2cjt_A UNC-13 homolog A, MUNC1 43.7 19 0.00064 20.6 2.6 12 1-12 78-89 (131)
34 2cm5_A Rabphilin-3A; protein t 32.5 35 0.0012 19.6 2.6 30 1-30 123-164 (166)
35 2cjs_A UNC-13 homolog A, MUNC1 32.0 48 0.0016 19.9 3.2 13 1-13 87-99 (167)
36 2xip_A Tumour protein P73; pho 28.4 65 0.0022 21.1 3.5 27 14-42 158-184 (208)
37 3d06_A Cellular tumor antigen 28.2 68 0.0023 20.8 3.6 26 15-42 156-181 (200)
38 2zkm_X 1-phosphatidylinositol- 28.0 64 0.0022 24.5 3.8 39 1-42 759-797 (799)
39 2rmn_A Tumor protein 63; beta 27.1 69 0.0024 21.4 3.5 26 15-42 168-193 (233)
40 3fbk_A RGS3, RGP3, regulator o 25.4 30 0.001 19.7 1.3 28 1-28 112-140 (153)
41 2kps_A Uncharacterized protein 25.3 92 0.0031 17.4 3.4 40 3-44 47-86 (98)
42 3i9v_7 NADH-quinone oxidoreduc 23.0 94 0.0032 19.4 3.4 29 16-50 52-80 (129)
43 2bwq_A Regulating synaptic mem 22.4 53 0.0018 17.7 2.0 15 1-15 107-121 (129)
44 3q01_A Cellular tumor antigen 22.2 1E+02 0.0034 20.6 3.6 26 15-42 156-181 (233)
45 2d7p_A Filamin-C; beta-sandwic 22.0 1.1E+02 0.0036 17.4 3.3 20 8-27 21-40 (112)
46 1olp_A Alpha-toxin; zinc phosp 21.4 1.4E+02 0.0049 21.1 4.4 26 10-38 298-323 (370)
47 2nwf_A Ubiquinol-cytochrome C 21.2 77 0.0026 18.9 2.7 20 1-20 1-20 (141)
48 2l3u_A YBBR family protein; be 20.6 37 0.0013 18.8 1.1 25 3-28 47-71 (98)
No 1
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=96.52 E-value=0.0085 Score=34.74 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=33.7
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEcc
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYNA 45 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk 45 (51)
+|.+.++|+++ ....+.-+.|..........|+|.|.+++..|
T Consensus 106 lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~k 148 (148)
T 3kwu_A 106 LGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148 (148)
T ss_dssp EEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEEC-
T ss_pred EEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEEeC
Confidence 58999999998 45667778887665555688999999998764
No 2
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.0082 Score=34.40 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=37.6
Q ss_pred CcceEEEcCceeccceEEEEEE---ecCCCCCCCCcceEEEEEEEEccch
Q psy16618 1 MGSASIDLTTLELGRCTDLILT---LEDPNKPEENLEYVGYNVEKYNAEQ 47 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~---L~Dp~~~e~dlG~I~l~vtL~pk~~ 47 (51)
||.+.|+|++|.-+...+..+. |.++.. ...-|+|.|.++..|.-+
T Consensus 88 lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~-~~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 88 IGTATVALKDLTGDQSRSLPYKLISLLNEKG-QDTGATIDLVIGYDPPSG 136 (140)
T ss_dssp CEEEEEEGGGTCSSSCEEEEEEEEEEECTTC-CEEEEEEEEEEEECCCBS
T ss_pred EEEEEEEHHHhccCCCceeEEeeeeccCCCC-CCCCCEEEEEEEEECCCC
Confidence 7999999999988888777766 888765 345699999999988654
No 3
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=95.94 E-value=0.012 Score=34.34 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=33.9
Q ss_pred CcceEEEcCceeccceE------EEEEEecCCCCCCCCcceEEEEEEEEc
Q psy16618 1 MGSASIDLTTLELGRCT------DLILTLEDPNKPEENLEYVGYNVEKYN 44 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~------e~~L~L~Dp~~~e~dlG~I~l~vtL~p 44 (51)
||++.|+|++|..+... +..+.|.+........|+|.|.++..|
T Consensus 104 iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 104 LGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred eEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 69999999999877643 456677665544577899999999876
No 4
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=95.50 E-value=0.012 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=34.9
Q ss_pred CcceEEEcCce-eccceEEEEEEecCCCCCCCCcceEEEEEEEEccch
Q psy16618 1 MGSASIDLTTL-ELGRCTDLILTLEDPNKPEENLEYVGYNVEKYNAEQ 47 (51)
Q Consensus 1 MGSA~l~Lt~L-El~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk~~ 47 (51)
||.+.|+|+++ .-+...+..+.|. ++ ...-|+|.|.++..|...
T Consensus 89 lG~~~i~l~~l~~~~~~~~~w~~L~-~~--~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 89 VGEATIPLEPVFVEGSIPPTAYNVV-KD--EEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp SEEEEEESHHHHHHSEEEEEEEEEE-ET--TEEEEEEEEEEEEEECCS
T ss_pred EEEEEEEHHHhccCCCCCcEEEEee-cC--CccCEEEEEEEEEEeCCC
Confidence 79999999999 5565566667776 33 367899999999999764
No 5
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=95.38 E-value=0.027 Score=32.11 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=32.8
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEc
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYN 44 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~p 44 (51)
||.+.++|+++.-++. ..+.|.+++.....-|+|.|.+++.+
T Consensus 91 lG~~~i~l~~l~~~~~--~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 91 LGKVAIPLLSIRDGQP--NCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp CCBCEEEGGGCCSSCC--EECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred eEEEEEEHHHccCCCc--eEEEeecCCCCCccceEEEEEEEEEe
Confidence 7999999999976654 45667766654578899999998753
No 6
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=95.34 E-value=0.037 Score=33.19 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=33.2
Q ss_pred CcceEEEcCceeccceE-E-----EEEEecCCCCCCCCcceEEEEEEEEccc
Q psy16618 1 MGSASIDLTTLELGRCT-D-----LILTLEDPNKPEENLEYVGYNVEKYNAE 46 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~-e-----~~L~L~Dp~~~e~dlG~I~l~vtL~pk~ 46 (51)
||.+.|.|.++...... + ..+.|..........|+|.|.++..|+.
T Consensus 92 lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~~ 143 (176)
T 3m7f_B 92 LGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKN 143 (176)
T ss_dssp EEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC--
T ss_pred EEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeCC
Confidence 69999999999887543 2 4566766555557889999999999984
No 7
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=94.73 E-value=0.094 Score=33.07 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=39.5
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCC-CCCcceEEEEEEEEccch
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKP-EENLEYVGYNVEKYNAEQ 47 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~-e~dlG~I~l~vtL~pk~~ 47 (51)
||++.++|.++..++..+.-+.|.++... ....|+|.+.+...|..+
T Consensus 103 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 103 IGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG 150 (284)
T ss_dssp EEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred eEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCC
Confidence 69999999999999999999999887653 467899999888877543
No 8
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=93.90 E-value=0.046 Score=31.09 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=29.8
Q ss_pred CcceEEEcCce-eccceEEEEEEecC--CCCCCCCcceEEEEEEE
Q psy16618 1 MGSASIDLTTL-ELGRCTDLILTLED--PNKPEENLEYVGYNVEK 42 (51)
Q Consensus 1 MGSA~l~Lt~L-El~r~~e~~L~L~D--p~~~e~dlG~I~l~vtL 42 (51)
||.+.|.|..+ .........+.|.. |+.+....|+|.+.++.
T Consensus 87 lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 87 LGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred eEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 68999999888 55554444555554 46666779999998864
No 9
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=92.75 E-value=0.14 Score=28.49 Aligned_cols=25 Identities=12% Similarity=0.505 Sum_probs=23.2
Q ss_pred CcceEEEcCceeccceEEEEEEecC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLED 25 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~D 25 (51)
||.+.++|++|.-+...+..+.|.+
T Consensus 87 iG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T 1rlw_A 87 LGTATFTVSSMKVGEKKEVPFIFNQ 111 (126)
T ss_dssp EEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred eEEEEEEHHHccCCCcEEEEEEcCC
Confidence 6999999999999999999999975
No 10
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=89.22 E-value=0.29 Score=27.92 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=24.3
Q ss_pred CcceEEEcCceeccceEEEEEEecCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDP 26 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp 26 (51)
||.+.|+|++|..+...++.+.|+.|
T Consensus 116 iG~~~i~l~~l~~~~~~~~~~~L~~p 141 (142)
T 2chd_A 116 IGETRFSLKKLKANQRKNFNICLERV 141 (142)
T ss_dssp EEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred EEEEEEEHHHcCCCCccEEEEecccC
Confidence 69999999999999999999999876
No 11
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=89.14 E-value=0.46 Score=27.10 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=30.1
Q ss_pred CcceEEEcCceecc--ceEEEEEEecCCCCCCCCcceEEEEEEEEccc
Q psy16618 1 MGSASIDLTTLELG--RCTDLILTLEDPNKPEENLEYVGYNVEKYNAE 46 (51)
Q Consensus 1 MGSA~l~Lt~LEl~--r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk~ 46 (51)
+|.+.|+|+++.-+ +..+.-+.|+ .-|+|.|.+++.+..
T Consensus 95 iG~~~i~l~~l~~~~~~~~~~w~~L~-------~~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 95 VANCTIQFEELLQNGSRHFEDWIDLE-------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEEEEEHHHHTSTTCSEEEEEEECB-------SSCEEEEEEEEEEEE
T ss_pred EEEEEEEHHHhcccCCCCccEEEEcC-------CCeEEEEEEEEEecC
Confidence 58999999998874 3457777775 269999999987643
No 12
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=87.29 E-value=0.18 Score=30.87 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=34.1
Q ss_pred CcceEEEcCceeccc---e--EEEEEEecCCCCCCCCcceEEEEEEEEccch
Q psy16618 1 MGSASIDLTTLELGR---C--TDLILTLEDPNKPEENLEYVGYNVEKYNAEQ 47 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r---~--~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk~~ 47 (51)
||.|.|+|.++.-+. . .++.++|+..+.....-|+|.+.++..+-++
T Consensus 113 lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 113 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLES 164 (173)
T ss_dssp EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC-
T ss_pred EEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecch
Confidence 699999999886432 2 2678888887544567899999998776543
No 13
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=86.07 E-value=0.59 Score=28.64 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=29.5
Q ss_pred CcceEEEcCceecc----ceEEEEEEecCCCCCCCCcceEEEEEEEE
Q psy16618 1 MGSASIDLTTLELG----RCTDLILTLEDPNKPEENLEYVGYNVEKY 43 (51)
Q Consensus 1 MGSA~l~Lt~LEl~----r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~ 43 (51)
||.|.|+|++|.-+ ...+.-+.|+. -|.|.|.+++.
T Consensus 117 iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-------~G~i~l~l~~~ 156 (157)
T 2fk9_A 117 VANCTLQFQELLRTTGASDTFEGWVDLEP-------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEEEHHHHHHHHTTCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred EEEEEEEHHHhhcccCCCCcccEEEECCC-------CcEEEEEEEEE
Confidence 68899999999876 77888899963 58999888763
No 14
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=84.35 E-value=0.92 Score=29.10 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=33.0
Q ss_pred CcceEEE--cCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEccch
Q psy16618 1 MGSASID--LTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYNAEQ 47 (51)
Q Consensus 1 MGSA~l~--Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk~~ 47 (51)
||.+.++ +.-.++.+..+....|.++.....+.|+|.+.++..|..+
T Consensus 104 iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~ 152 (296)
T 1dqv_A 104 IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAG 152 (296)
T ss_dssp EEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTT
T ss_pred EEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccc
Confidence 5888885 3334455566677788877666678999999888766543
No 15
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=84.31 E-value=0.78 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=36.1
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEccc
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYNAE 46 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk~ 46 (51)
+|++.+-|.+|......++...|-|+|+..-+ ++|.+.|+-.|-+
T Consensus 98 IG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~-a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 98 IGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK-TSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEESHHHHHHSEEEEEEEEECTTSCEEE-EEEEEEEEEEETT
T ss_pred EEEEEEEhHHhccCCeEEEeecccCCCCCccc-cEEEEEEEecCCC
Confidence 48999999999999999999999999994322 6777777666543
No 16
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=84.13 E-value=0.24 Score=34.81 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=10.8
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC----------------------CCCCcceEEEEEEEEc
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK----------------------PEENLEYVGYNVEKYN 44 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~----------------------~e~dlG~I~l~vtL~p 44 (51)
+|.+.|+|++|.-+...+.-..|.+++. .....|.|.|.+...+
T Consensus 92 lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~ 157 (483)
T 3bxj_A 92 VGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157 (483)
T ss_dssp ---------------CCEECC--------------------------------------CEEEEEE
T ss_pred EEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence 6999999999999888898899987764 2357899999888765
No 17
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=77.63 E-value=1.9 Score=24.64 Aligned_cols=28 Identities=11% Similarity=0.041 Sum_probs=24.2
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.++|.++.+....+.-..|..+..
T Consensus 108 lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 108 AGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp SEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred EEEEEEEcccccCcccccceeeCcCCCc
Confidence 7999999999998888888888887654
No 18
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=75.73 E-value=2.2 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.7
Q ss_pred CcceEEEcCceeccceEEEEEEecCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDP 26 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp 26 (51)
||.+.|+|+++..+...+.-+.|.++
T Consensus 126 iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 126 IGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp EEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred EEEEEEEchhccCCCCcceEEECCCC
Confidence 69999999999998888888888765
No 19
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=75.25 E-value=2.1 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=22.2
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.|+|+++..+...+.-..|.+..+
T Consensus 106 lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 106 LGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp EEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred EEEEEEEhhhccCCCCcceeEECCCccC
Confidence 6999999999999888888888887654
No 20
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=74.55 E-value=2.5 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.6
Q ss_pred CcceEEEcCceeccceEEEEEEecC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLED 25 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~D 25 (51)
||.+.|+|.++..++..+.-+.|+-
T Consensus 118 iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 118 IGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred EEEEEEEHHHccCCCCcceEEECcC
Confidence 6899999999999988888888764
No 21
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=69.32 E-value=3 Score=23.46 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.2
Q ss_pred CcceEEEcCceeccceEEEEEEecCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPN 27 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~ 27 (51)
||++.|+|+++..+...+.-..|++..
T Consensus 114 lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 114 LGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred EEEEEEeccccccCCCCCeEEECCccC
Confidence 699999999998877777888887654
No 22
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.21 E-value=2.2 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.4
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.|+|.++..+...+.-..|.++..
T Consensus 111 iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 111 LGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp CEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred EEEEEEecccccccccccceeeccCCCC
Confidence 6999999999988877777777776654
No 23
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=64.77 E-value=7.6 Score=21.73 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=21.0
Q ss_pred CcceEEEcCceeccc-eEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGR-CTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r-~~e~~L~L~Dp~~ 28 (51)
||.+.|+|++|..+. ..++.+.|+...+
T Consensus 108 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 136 (138)
T 1ugk_A 108 IGEVLIPLSGIELSEGKMLMNREIISGPS 136 (138)
T ss_dssp CEEEEEECTTCCCTTCCEEEEEECBSSSS
T ss_pred EEEEEEehhHccCCCCcchhhhhhhcCCC
Confidence 689999999998864 4467788876544
No 24
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.25 E-value=3.8 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.5
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.|+|+++..+...+.-+.|+...+
T Consensus 111 iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 111 IGEVSIPLNKVDLTQMQTFWKDLKPSGP 138 (141)
T ss_dssp EEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred EEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence 6899999999998887887777775543
No 25
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=62.84 E-value=1.8 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=16.2
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.|.|.++..+...+.-+.|.....
T Consensus 110 iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 110 LGEAEIQMDSWKLDKKLDHCLPLHGKIS 137 (148)
T ss_dssp EEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred EEEEEEEcccccccCCccceEECcCccc
Confidence 4666666666666666666666654433
No 26
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=58.11 E-value=4.5 Score=23.97 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=25.4
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.|.|+++..+...+.-..|..+..
T Consensus 115 iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 142 (171)
T 2q3x_A 115 MGVAQILLEELDLSSMVIGWYKLFPPSS 142 (171)
T ss_dssp EEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred EEEEEEEHHHcccCCCcceeEECCCccc
Confidence 6999999999999999999999988766
No 27
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=55.04 E-value=15 Score=20.22 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=21.3
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
||.+.|.|.++.... .+.-+.|.+.++
T Consensus 110 lG~~~i~l~~l~~~~-~~~W~~L~~~~~ 136 (141)
T 1v27_A 110 LGEILIELETALLDD-EPHWYKLQTHDS 136 (141)
T ss_dssp CEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred EEEEEEEccccCCCC-CCceEECccccc
Confidence 699999999987655 677788877655
No 28
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=54.07 E-value=6.3 Score=26.68 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=27.4
Q ss_pred CcceEEEcCceeccce----EEEEEEecCCCCCCCCcceEEEEEEEEc
Q psy16618 1 MGSASIDLTTLELGRC----TDLILTLEDPNKPEENLEYVGYNVEKYN 44 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~----~e~~L~L~Dp~~~e~dlG~I~l~vtL~p 44 (51)
+|.|.++|+++.-+.. .+..+.|... .-|+|.+.++|..
T Consensus 466 lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~-----~~G~i~l~~~l~l 508 (510)
T 3jzy_A 466 LGRTEIPVAKIRTEQESKGPMTRRLLLHEV-----PTGEVWVRFDLQL 508 (510)
T ss_dssp EEEEEEEHHHHHHHHHHHCSCCEEEECBSS-----SSCEEEEEEEEEE
T ss_pred eEEEEEEHHHhccccCCCCceeeeecCCCC-----CCceEEEEEEEEE
Confidence 5888899988876544 5555666644 4488888887753
No 29
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=52.60 E-value=12 Score=27.32 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=30.0
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEE
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKY 43 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~ 43 (51)
+|.+.|.|+.|.-+. -.+.|.|++...-..|.|.+.+++.
T Consensus 584 iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 584 IGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred eEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 588999999987653 4799999987333567777777663
No 30
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.36 E-value=11 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.5
Q ss_pred CcceEEEcCceeccceEEEEEEec
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLE 24 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~ 24 (51)
||.+.|.|.+|......+.-..|+
T Consensus 117 iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 117 IGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp CEEEEEETTTSCTTTCCCEEECCB
T ss_pred EEEEEEechhcCCCCCccEEEEee
Confidence 799999999998887766666666
No 31
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=45.43 E-value=20 Score=27.89 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=33.8
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEc
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYN 44 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~p 44 (51)
+|.+.|.|+.|.-+ --++.|.|+++..-..|.|.+.|++..
T Consensus 805 iG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 805 VGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp EEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred EeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 58999999999765 347999999885557899999998873
No 32
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=44.01 E-value=22 Score=27.31 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=32.5
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEc
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYN 44 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~p 44 (51)
+|.+.|.|+.|..+ --++.|.|++...-..+.|.+.|++.-
T Consensus 731 iG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 731 IGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp EEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred eeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 58999999999876 347999999885556678888887763
No 33
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=43.69 E-value=19 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=8.5
Q ss_pred CcceEEEcCcee
Q psy16618 1 MGSASIDLTTLE 12 (51)
Q Consensus 1 MGSA~l~Lt~LE 12 (51)
||.+.|+|+++.
T Consensus 78 iG~~~i~l~~l~ 89 (131)
T 2cjt_A 78 VGTVWIPLRTIR 89 (131)
T ss_dssp EEEEEEEGGGSC
T ss_pred EEEEEEEHHHhh
Confidence 577777777764
No 34
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=32.55 E-value=35 Score=19.61 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=17.2
Q ss_pred CcceEEEcCcee------------ccceEEEEEEecCCCCCC
Q psy16618 1 MGSASIDLTTLE------------LGRCTDLILTLEDPNKPE 30 (51)
Q Consensus 1 MGSA~l~Lt~LE------------l~r~~e~~L~L~Dp~~~e 30 (51)
||.+.|.|.++. -+++.+.-..|.+|+.+.
T Consensus 123 iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~~~~ 164 (166)
T 2cm5_A 123 IGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVS 164 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC-----
T ss_pred EEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCccccc
Confidence 588999998752 245566666676666543
No 35
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=31.95 E-value=48 Score=19.86 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=10.4
Q ss_pred CcceEEEcCceec
Q psy16618 1 MGSASIDLTTLEL 13 (51)
Q Consensus 1 MGSA~l~Lt~LEl 13 (51)
||.|.|+|+++.-
T Consensus 87 iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 87 VGTVWIPLRTIRQ 99 (167)
T ss_dssp EEEEEEEGGGSCB
T ss_pred EEEEEEEHHHhcc
Confidence 6889999998743
No 36
>2xip_A Tumour protein P73; phosphoprotein, tumor suppressor, transcription, metal-bindi nucleus, cell cycle, transcription regulation; HET: TAM; 1.82A {Homo sapiens} PDB: 2xwc_A* 4a63_A 3vd0_A* 3vd1_A* 3vd2_A* 3qyn_A 3qym_A 3us0_A 3us1_A 3us2_A
Probab=28.42 E-value=65 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=21.0
Q ss_pred cceEEEEEEecCCCCCCCCcceEEEEEEE
Q psy16618 14 GRCTDLILTLEDPNKPEENLEYVGYNVEK 42 (51)
Q Consensus 14 ~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL 42 (51)
-|++.+.+.|||++. +=+|.=.+.|.+
T Consensus 158 RRpi~lifTLE~~~G--~vLGR~~~~vRI 184 (208)
T 2xip_A 158 RRPILIIITLEMRDG--QVLGRRSFEGRI 184 (208)
T ss_dssp CCCEEEEEEEECTTS--CEEEEEEEEEEE
T ss_pred cceEEEEEEEECCCC--CEeeeeEEeeEE
Confidence 378999999999876 678876666654
No 37
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ...
Probab=28.18 E-value=68 Score=20.80 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=20.5
Q ss_pred ceEEEEEEecCCCCCCCCcceEEEEEEE
Q psy16618 15 RCTDLILTLEDPNKPEENLEYVGYNVEK 42 (51)
Q Consensus 15 r~~e~~L~L~Dp~~~e~dlG~I~l~vtL 42 (51)
|++.+.+.|||++. +=+|.=.+.|.+
T Consensus 156 Rpi~liftLE~~~G--~vLGr~~~~vRI 181 (200)
T 3d06_A 156 SPILTIITLEDSSG--NLLGRNSFEVRV 181 (200)
T ss_dssp CCEEEEEEEECTTC--CEEEEEEEEEEE
T ss_pred ceEEEEEEEECCCC--CEeceeEEeeEE
Confidence 78999999999885 678876666654
No 38
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=27.96 E-value=64 Score=24.45 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=28.5
Q ss_pred CcceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEE
Q psy16618 1 MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEK 42 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL 42 (51)
||.+.|.|+.|.-+ --++.|.|+....-..+.+.+.+.+
T Consensus 759 iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 759 LGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp EEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred cceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEE
Confidence 58999999999754 4579999987733356666666655
No 39
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family, activator, alternative promoter usage, alternative splicing; NMR {Homo sapiens}
Probab=27.10 E-value=69 Score=21.35 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCCCCCCCcceEEEEEEE
Q psy16618 15 RCTDLILTLEDPNKPEENLEYVGYNVEK 42 (51)
Q Consensus 15 r~~e~~L~L~Dp~~~e~dlG~I~l~vtL 42 (51)
|++.+++.|||++. +=+|.=.+.|.+
T Consensus 168 Rpi~lifTLE~~~G--~VLGR~~~~vRI 193 (233)
T 2rmn_A 168 RPILIIVTLETRDG--QVLGRRCFEARI 193 (233)
T ss_dssp CCEEEEEEEECTTS--CEEEEEEEEEEE
T ss_pred ceeEEEEEEEcCCC--CEeeeeEEeeEE
Confidence 78999999999876 678876666654
No 40
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=25.43 E-value=30 Score=19.74 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=20.8
Q ss_pred CcceEEEcCcee-ccceEEEEEEecCCCC
Q psy16618 1 MGSASIDLTTLE-LGRCTDLILTLEDPNK 28 (51)
Q Consensus 1 MGSA~l~Lt~LE-l~r~~e~~L~L~Dp~~ 28 (51)
||.+.|.|++|. .++..+.-..|.++..
T Consensus 112 lG~~~i~l~~l~~~~~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 112 IGCMSFGVKSLLTPDKEISGWYYLLGEHL 140 (153)
T ss_dssp EEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred EEEEEEEHHHhcCCCCccccEEECCChhh
Confidence 688999999987 3677888888877544
No 41
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=25.31 E-value=92 Score=17.38 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=24.5
Q ss_pred ceEEEcCceeccceEEEEEEecCCCCCCCCcceEEEEEEEEc
Q psy16618 3 SASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNVEKYN 44 (51)
Q Consensus 3 SA~l~Lt~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l~vtL~p 44 (51)
.|++||+.++-|. +++.++..=|..-+ =...-.+.|||.-
T Consensus 47 ~a~vDLs~l~~G~-~~vpv~v~lP~gv~-vv~~~~v~vtl~~ 86 (98)
T 2kps_A 47 SLWIDATGKAVGE-HTVKIYWQLPAGIE-MVSIPDVTYTLKA 86 (98)
T ss_dssp BCEECCTTCCSSC-EEEECCCBCSSCCC-CCCCCEEEECEEE
T ss_pred EEEEECCCCCCCe-EEEeEEEECCCCEE-EEecCcEEEEEEE
Confidence 4899999998875 46777776565422 2223444555443
No 42
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=23.00 E-value=94 Score=19.40 Aligned_cols=29 Identities=10% Similarity=-0.130 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCCCCCCcceEEEEEEEEccchhcc
Q psy16618 16 CTDLILTLEDPNKPEENLEYVGYNVEKYNAEQRQY 50 (51)
Q Consensus 16 ~~e~~L~L~Dp~~~e~dlG~I~l~vtL~pk~~~~k 50 (51)
|+-|+..|.|++ |+=.+-+..+||..+.|
T Consensus 52 TtvMsvsLS~~~------geP~l~a~vSprha~lK 80 (129)
T 3i9v_7 52 TTIMTASLSDGL------GEPFLLADVSPRHAKLK 80 (129)
T ss_dssp CSEEEEEEECSS------SCEEEEEEECCSSSSSC
T ss_pred ceeEEEEeccCC------CCeeEEEecCcchhhhc
Confidence 456888888775 46677778888887765
No 43
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=22.36 E-value=53 Score=17.68 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=10.3
Q ss_pred CcceEEEcCceeccc
Q psy16618 1 MGSASIDLTTLELGR 15 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r 15 (51)
||.+.+.|.++....
T Consensus 107 lG~~~i~l~~l~~~~ 121 (129)
T 2bwq_A 107 LGEILIELETALLDD 121 (129)
T ss_dssp EEEEEEEGGGCCCSS
T ss_pred eEEEEEEccccCCCc
Confidence 577888887775543
No 44
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain, oligomerization, TP53, TUMO suppressor, dimer, DNA binding, antitumor protein; 2.10A {Homo sapiens} PDB: 3q05_A* 3ts8_A 3q06_A* 1a1u_A
Probab=22.16 E-value=1e+02 Score=20.63 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=20.4
Q ss_pred ceEEEEEEecCCCCCCCCcceEEEEEEE
Q psy16618 15 RCTDLILTLEDPNKPEENLEYVGYNVEK 42 (51)
Q Consensus 15 r~~e~~L~L~Dp~~~e~dlG~I~l~vtL 42 (51)
|++.+++.|||++. +-+|.=.+.|.+
T Consensus 156 Rpi~lIfTLE~~~G--~vLGR~~~evRI 181 (233)
T 3q01_A 156 RPILVIITLEDSSG--NLLGRDSFEVRV 181 (233)
T ss_dssp CCEEEEEEEECTTC--CEEEEEEEEEEE
T ss_pred ceeEEEEEEECCCC--CEeeeeEEEEEE
Confidence 78999999999865 778876666654
No 45
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=21.99 E-value=1.1e+02 Score=17.40 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=15.5
Q ss_pred cCceeccceEEEEEEecCCC
Q psy16618 8 LTTLELGRCTDLILTLEDPN 27 (51)
Q Consensus 8 Lt~LEl~r~~e~~L~L~Dp~ 27 (51)
+..+..+++..++++..|.+
T Consensus 21 ~~~~~vg~~~~F~V~~~~a~ 40 (112)
T 2d7p_A 21 ETGLKVNQPASFAVQLNGAR 40 (112)
T ss_dssp SBCCCTTCCEEEEEECTTCC
T ss_pred cCCcccCCcEEEEEEeCCCC
Confidence 45667788899999988863
No 46
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=21.41 E-value=1.4e+02 Score=21.11 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=21.5
Q ss_pred ceeccceEEEEEEecCCCCCCCCcceEEE
Q psy16618 10 TLELGRCTDLILTLEDPNKPEENLEYVGY 38 (51)
Q Consensus 10 ~LEl~r~~e~~L~L~Dp~~~e~dlG~I~l 38 (51)
++|-+...+..++++| +.+|+|.|.+
T Consensus 298 dFe~G~~d~y~v~~~~---~~~dlg~l~~ 323 (370)
T 1olp_A 298 DFTRNQEGTYTLKLKN---KNTKYSDIKN 323 (370)
T ss_dssp CSCTTCEEEEEEECSC---SSCCGGGEEE
T ss_pred ccCCCCeeEEEEeccC---CcCCcCceEE
Confidence 5788889999998887 4589999875
No 47
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=21.24 E-value=77 Score=18.86 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.5
Q ss_pred CcceEEEcCceeccceEEEE
Q psy16618 1 MGSASIDLTTLELGRCTDLI 20 (51)
Q Consensus 1 MGSA~l~Lt~LEl~r~~e~~ 20 (51)
|++..+||++|+-++..-+.
T Consensus 1 ~~~~~vd~s~l~~g~~~~v~ 20 (141)
T 2nwf_A 1 LASIFVDVSSVEPGVQLTVK 20 (141)
T ss_dssp CCCEEEECTTCCTTEEEEEE
T ss_pred CCCEEEecccCCCCCEEEEE
Confidence 57889999999877766554
No 48
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=20.63 E-value=37 Score=18.83 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=17.5
Q ss_pred ceEEEcCceeccceEEEEEEecCCCC
Q psy16618 3 SASIDLTTLELGRCTDLILTLEDPNK 28 (51)
Q Consensus 3 SA~l~Lt~LEl~r~~e~~L~L~Dp~~ 28 (51)
.|++||+.+.-|+ +.+.++..-|.+
T Consensus 47 ~~~vDls~l~~G~-~~v~v~v~~P~~ 71 (98)
T 2l3u_A 47 SLWIDATGKAVGE-HTVKIYWQLPAG 71 (98)
T ss_dssp BCEEECSSCCSBC-CEECCCCBCSSS
T ss_pred EEEEEecCCcCce-EEEeEEEECCCC
Confidence 4899999998765 456666655543
Done!