RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16618
         (51 letters)



>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
           sapiens} SCOP: b.7.1.1
          Length = 126

 Score = 30.0 bits (68), Expect = 0.012
 Identities = 3/34 (8%), Positives = 16/34 (47%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNKPEENLE 34
           +G+A+  ++++++G   ++        +    + 
Sbjct: 87  LGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.037
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 16/54 (29%)

Query: 12   ELGRCTDLILTLEDPNK-----PEENLEYV--------GYNVE--KYNAEQRQY 50
            ELGR    ++ + +P +      +E L+YV        G+ VE   YN E +QY
Sbjct: 1801 ELGRSNYGMIAI-NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853


>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
           structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
           b.7.1.1
          Length = 133

 Score = 25.3 bits (56), Expect = 0.79
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNK 28
           +G  +I L ++  G+    +L  +D  +
Sbjct: 91  LGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118


>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
           binding, alternative splicing, cell membrane,
           cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
          Length = 148

 Score = 25.0 bits (55), Expect = 0.98
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNKPEENLEY 35
           +G A I + + +L +  D  L L      E    +
Sbjct: 110 LGEAEIQMDSWKLDKKLDHCLPLHGKISAESEGHH 144


>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
           cardiomyopathy, membrane fusion, dystrophin, structural
           genomics, NPPSFA; NMR {Homo sapiens}
          Length = 140

 Score = 23.9 bits (52), Expect = 2.2
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNKPEEN 32
           +G+A++ L  L   +   L   L      +  
Sbjct: 88  IGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119


>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
          Length = 156

 Score = 22.6 bits (48), Expect = 6.4
 Identities = 10/39 (25%), Positives = 13/39 (33%)

Query: 2  GSASIDLTTLELGRCTDLILTLEDPNKPEENLEYVGYNV 40
           S SI     + G C  L    +        LE+ G N 
Sbjct: 49 ESLSITFYLKDQGTCLLLTEVAKRQEGYVYVLEFYGTNT 87


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 738,536
Number of extensions: 28549
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 6
Length of query: 51
Length of database: 6,701,793
Length adjustment: 23
Effective length of query: 28
Effective length of database: 6,059,610
Effective search space: 169669080
Effective search space used: 169669080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)