RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16618
         (51 letters)



>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 27.4 bits (60), Expect = 0.046
 Identities = 3/30 (10%), Positives = 15/30 (50%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNKPE 30
           +G+A+  ++++++G   ++        +  
Sbjct: 87  LGTATFTVSSMKVGEKKEVPFIFNQVTEMV 116


>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 142

 Score = 23.7 bits (50), Expect = 0.99
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 1   MGSASIDLTTLELGRCTDLILTLED 25
           +G   IDL++      T     L++
Sbjct: 114 LGEVLIDLSSTSHLDNTPRWYPLKE 138


>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
           domain-containing protein 2, MCTP2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 23.6 bits (50), Expect = 1.1
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNKPE 30
           +G  +I L ++  G+    +L  +D  +  
Sbjct: 84  LGKVAIPLLSIRDGQPNCYVLKNKDLEQAF 113


>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 143

 Score = 23.2 bits (49), Expect = 1.8
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 1   MGSASIDLTTLELGRCTDLILTLE 24
           +G   + + T++ G  T+    L+
Sbjct: 118 IGEFKVPMNTVDFGHVTEEWRDLQ 141


>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 138

 Score = 23.1 bits (49), Expect = 1.9
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 1   MGSASIDLTTLELGRCTDLILTLEDPNKP 29
           +G   I L+ +EL     +++  E  + P
Sbjct: 108 IGEVLIPLSGIELSE-GKMLMNREIISGP 135


>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 356

 Score = 23.0 bits (48), Expect = 2.0
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 26  PNKPEENLEYVGYNVEKYNAEQRQ 49
           P+   E++      V K++   RQ
Sbjct: 333 PDMDPEHVGAFVDAVHKHSRLLRQ 356


>d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine
          carboxypeptidase {Unidentified organism [TaxId: 32644]}
          Length = 95

 Score = 22.1 bits (47), Expect = 4.1
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 6  IDLTTLELGRCTDLILTLEDPNKPEENLEYVGY 38
          I +  ++ G   D++  +E+P      LE V +
Sbjct: 51 ILIPQIKEGFDADIVGVIENPLANIRTLEEVAF 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 177,049
Number of extensions: 5214
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 7
Length of query: 51
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 29
Effective length of database: 2,105,536
Effective search space: 61060544
Effective search space used: 61060544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.1 bits)