BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16623
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
S+ C NC GHY CP+ AD++GD+ C++C GH +REC E+
Sbjct: 14 SSTSCRNCGKEGHYARECPE---ADSKGDERSTTCFRCGEEGHMSRECPNEA 62
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 37 SSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
S +CY C + GH CP S + GD+ CYKC GH +REC
Sbjct: 191 SGAGDRKCYKCGESGHMSRECPSAGSTGS-GDRA---CYKCGKPGHISREC 237
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 37 SSTSTIQCYNCFDFGHYQYSCPQKSSA-DARGDKVGIVCYKCNNYGHFARECATESPT 93
S CY C D GH CP GD+ CYKC GH +REC + T
Sbjct: 163 SGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK---CYKCGESGHMSRECPSAGST 217
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 44 CYNCFDFGHYQYSCPQKSSA-DARGDKVGIVCYKCNNYGHFAREC 87
CY C D GH CP GD+ CYKC + GH +R+C
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDR---TCYKCGDAGHISRDC 183
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 34 VEMSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 89
+ + C+ C + GH CP + A G CYKC GH +R+C +
Sbjct: 62 ARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGA---AKGFECYKCGQEGHLSRDCPS 114
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 41 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+ C+ C + GH CP ++ + A G + C++C GH +R+C
Sbjct: 42 STTCFRCGEEGHMSRECPNEARSGAAG---AMTCFRCGEAGHMSRDC 85
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 34 VEMSSTSTIQCYNCFDFGHYQYSCP--QKSSADARGDKVGI-----------VCYKCNNY 80
+ + +CY C GH CP Q S G K G CYKC +
Sbjct: 89 AKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDA 148
Query: 81 GHFAREC 87
GH +R+C
Sbjct: 149 GHISRDC 155
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGI-VCYKCNNYGHFARECAT 89
CY C GH CP+ + G CYKC GH +R+C +
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
C NC GH +Y CP+K + A I+C C N GH AR+C
Sbjct: 321 CQNCGQIGHRKYDCPEKQNYTA-----NIICRVCGNAGHMARDC 359
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
C NC GH +Y CP++ R I+C C N GH AR+C
Sbjct: 306 CQNCGQIGHRKYDCPEQ-----RNFTANIICRVCGNAGHMARDC 344
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVG--IVCYKCNNYGHFARECATES 91
CYNC D GH+ C + D RG G CY C + GH AR+C +S
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKS 183
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 44 CYNCFDFGHYQYSCPQKSSAD--ARGDKVGIVCYKCNNYGHFARECATE 90
CY C D GH+ C QK +A G CY C GH AR+CAT+
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATK 248
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 89
CY C GH C Q+ S D CYKC GHFAREC++
Sbjct: 255 CYQCGGSGHLARDCDQRGSGGGGNDNA---CYKCGKEGHFARECSS 297
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIV--CYKCNNYGHFARECAT 89
CYNC + GH C + CY C + GHFAR+C +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTS 149
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC FGH Q CP+ I C KC GH A++C
Sbjct: 399 KCYNCGKFGHMQRQCPEPRK---------IKCLKCGKPGHLAKDC 434
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++CYNC FGH Q CP+ C KC GH A++C
Sbjct: 397 LRCYNCGKFGHMQRQCPEPRKTK---------CLKCGKLGHLAKDC 433
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++CYNC FGH Q CP+ + C KC GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRK---------MRCLKCGKPGHLAKDC 438
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++CYNC FGH Q CP+ + C KC GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRK---------MRCLKCGKPGHLAKDC 438
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++CYNC FGH Q CP+ + C KC GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRK---------MRCLKCGKPGHLAKDC 438
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC FGH Q CP+ I C KC GH A++C
Sbjct: 399 KCYNCGKFGHMQRQCPEPRK---------IKCLKCGKPGHLAKDC 434
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
C NC + GH + CP++ + A I+C++C GH AR+C
Sbjct: 370 CKNCGNKGHRAFECPEQRNWTAH-----IICHRCGGQGHLARDC 408
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CY C GHYQ CP+K + ++ C CN GH A++C
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRER----CQLCNGMGHNAKQC 548
>sp|P03322|GAG_RSVP Gag-Pro polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CY C GHYQ CP+K + ++ C CN GH A++C
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRER----CQLCNGMGHNAKQC 548
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
C NC + GH ++ CP++ + + IVC C + GH AR+C
Sbjct: 311 CQNCGNVGHRRFDCPERIN-----HTMNIVCRHCGSIGHIARDC 349
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++C+NC FGH Q C I C+KC GH A++C
Sbjct: 390 LKCFNCGKFGHMQRECKAPRQ---------IKCFKCGKIGHMAKDC 426
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++C+NC FGH Q C I C+KC GH A++C
Sbjct: 390 LKCFNCGKFGHMQRECKAPRQ---------IKCFKCGKIGHMAKDC 426
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
C NC + GH ++ CPQ+ A ++C C GH AR+C
Sbjct: 370 CQNCGEKGHRRWECPQQRVYSA-----NVICRICGGAGHMARDC 408
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
C NC + GH ++ CPQ+ A ++C C GH AR+C
Sbjct: 370 CQNCGEKGHRRWECPQQRVYSA-----NVICRICGGAGHMARDC 408
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CY C GHYQ CP+K + ++ C C+ GH A++C
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRER----CQLCDGMGHNAKQC 548
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CY C GHYQ CP+K + ++ C C+ GH A++C
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRER----CQLCDGMGHNAKQC 548
>sp|O92954|GAG_RSVSB Gag-Pro polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CY C GHYQ CP+K + ++ C C+ GH A++C
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRER----CQLCDGMGHNAKQC 548
>sp|P0C776|GAG_RSVSA Gag-Pro polyprotein OS=Avian leukosis virus RSA GN=gag-pro PE=3
SV=1
Length = 701
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CY C GHYQ CP+K + ++ C C+ GH A++C
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRER----CQLCDGMGHNAKQC 548
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1
PE=1 SV=3
Length = 763
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90
C+NC GH CP+ R ++ VCY C GH +REC E
Sbjct: 160 CFNCQQPGHRSSDCPE-----PRKEREPRVCYNCQQPGHTSRECTEE 201
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++C+NC GH CP+ RG C+ C GH + EC
Sbjct: 242 MKCFNCKGEGHRSAECPEP----PRG------CFNCGEQGHRSNEC 277
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
C C GH +Y CP + + + I+C +CN GH R+C ++S
Sbjct: 259 CATCGQQGHKKYECPHRETFAMK-----IICRRCNQPGHTIRDCTSDS 301
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIV-----------CYKCNNYGHFARECA 88
+CY C FGH+ +CP+++ R + +G + CY+CN GH+ R C
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCP 112
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 EMSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESPT 93
+ + CY C GH+ +CP+ + + RG + CYKCN GH ++ C S T
Sbjct: 89 DCTQADNPTCYRCNKTGHWVRNCPE--AVNERGP-TNVSCYKCNRTGHISKNCPETSKT 144
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 34 VEMSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
V + + CY C GH +CP+ S CY C GH REC
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSK----------TCYGCGKSGHLRREC 158
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 74 CYKCNNYGHFARECATES 91
CYKCN +GHFAR C E+
Sbjct: 57 CYKCNQFGHFARACPEEA 74
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2
PE=1 SV=1
Length = 974
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 44 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATE 90
C+NC GH CP+ K + R VCY C GH +R+C E
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPR------VCYNCQQPGHNSRDCPEE 300
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 44 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATE 90
C+NC GH CP+ K + R VCY C GH +R+C E
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPR------VCYNCQQPGHNSRDCPEE 414
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
++C+NC GH CP+ RG C+ C GH + EC
Sbjct: 453 MKCFNCKGEGHRSAECPEPP----RG------CFNCGEQGHRSNEC 488
>sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polyprotein OS=Homo sapiens
GN=ERVK-5 PE=1 SV=3
Length = 667
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 43 QCYNCFDFGHYQYSCPQ-------KSSADARGDKVGIVCYKCNNYGHFARECATE 90
+CYNC GH + SCP + A+ K +C KC H+A +C ++
Sbjct: 544 KCYNCGQIGHLKRSCPVLNKQNIINQAITAKNKKPSGLCPKCGKGKHWANQCHSK 598
>sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=gag PE=3 SV=1
Length = 441
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC GH C Q GI+C+ C GH +EC
Sbjct: 380 RCYNCGKPGHQARQCRQ-----------GIICHNCGKRGHMQKEC 413
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 52 HYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
H +Y CP + + +G IVC C GHF+R+C + S
Sbjct: 281 HKRYDCPNRKIPNIQG----IVCKICGQTGHFSRDCNSSS 316
>sp|P69732|GAG_EIAVY Gag polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=gag PE=1 SV=1
Length = 486
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CYNC GH C R KV C+KC GHF+++C
Sbjct: 383 CYNCGKPGHLSSQC--------RAPKV---CFKCKQPGHFSKQC 415
>sp|P69731|GAG_EIAVC Gag polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=gag PE=3 SV=1
Length = 486
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CYNC GH C R KV C+KC GHF+++C
Sbjct: 383 CYNCGKPGHLSSQC--------RAPKV---CFKCKQPGHFSKQC 415
>sp|P69730|GAG_EIAV9 Gag polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=gag PE=1 SV=1
Length = 486
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
CYNC GH C R KV C+KC GHF+++C
Sbjct: 383 CYNCGKPGHLSSQC--------RAPKV---CFKCKQPGHFSKQC 415
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 39 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 89
T ++CY+C GH + C Q S G +CYKCN GH A C +
Sbjct: 132 TMGVKCYSCGKIGHRSFECQQASD--------GQLCYKCNQPGHIAVNCTS 174
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 44 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 89
CY C GH CP SS + R G CYKC GH AR+C T
Sbjct: 60 CYACGTAGHLVRDCP--SSPNPR---QGAECYKCGRVGHIARDCRT 100
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 42 IQCYNCFDFGHYQYSC---PQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CY C GH C Q+S G + + CY C +YGH AR+C
Sbjct: 83 AECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 31 VLRVEMSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
V V ++ +CYNC + GH C + G +CY CN GH A EC
Sbjct: 6 VPTVPQTTRPGPRCYNCGENGHQARECTK-----------GSICYNCNQTGHKASEC 51
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
S + CY C +GH AR +G+ CY C GH + EC S
Sbjct: 114 SNMNCYACGSYGH-----------QARDCTMGVKCYSCGKIGHRSFECQQAS 154
>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=gag PE=3 SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC GH C Q GI+C+ C GH ++C
Sbjct: 386 KCYNCGKPGHLARQCRQ-----------GIICHHCGKRGHMQKDC 419
>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3
SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC GH C Q GI+C+ C GH ++C
Sbjct: 386 KCYNCGKPGHLARQCRQ-----------GIICHHCGKRGHMQKDC 419
>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
GN=gag PE=3 SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC GH C Q GI+C+ C GH ++C
Sbjct: 386 KCYNCGKPGHLARQCRQ-----------GIICHHCGKRGHMQKDC 419
>sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain 1514) GN=gag PE=3 SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
+CYNC GH C Q GI+C+ C GH ++C
Sbjct: 386 KCYNCGKPGHLARQCRQ-----------GIICHHCGKRGHMQKDC 419
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+ ++CY C + GH +C + S + CY+C GH AREC E+
Sbjct: 128 TKVKCYRCGETGHVAINCSKTSE---------VNCYRCGESGHLARECTIEA 170
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 36 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 87
MSS+ CY C + GH C D + DK CY C GH A++C
Sbjct: 40 MSSSLPDICYRCGESGHLAKDC------DLQEDK---ACYNCGRGGHIAKDC 82
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+ ++CY C + GH +C + S + CY+C GH AREC E+
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSE---------VNCYRCGESGHLARECTIEA 175
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+ ++CY C + GH +C + S + CY+C GH AREC E+
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSE---------VNCYRCGESGHLARECTIEA 175
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+ ++CY C + GH +C + S + CY+C GH AREC E+
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSE---------VNCYRCGESGHLARECTIEA 175
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+ ++CY C + GH +C + S + CY+C GH AREC E+
Sbjct: 134 TKVKCYRCGETGHVAINCSKTSE---------VNCYRCGESGHLARECTIEA 176
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 41 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90
TI+C+NC GH +C + RG C+KC GH ++C E
Sbjct: 391 TIKCFNCGKEGHLARNC---KAPRRRG------CWKCGQEGHQMKDCKNE 431
>sp|Q9IDV8|GAG_HV1YB Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag PE=3 SV=3
Length = 511
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 41 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90
TI+C+NC GH +C + RG C+KC GH ++C E
Sbjct: 391 TIKCFNCGKEGHLARNC---KAPRRRG------CWKCGQEGHQMKDCKNE 431
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+ ++CY C + GH +C + S + CY+C GH AREC E+
Sbjct: 126 TKVKCYRCGETGHVAINCSKTSE---------VNCYRCGESGHLARECTIEA 168
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 58 PQKSSADARGDK--------VGIVCYKCNNYGHFAREC 87
PQ SS D D+ IVC+ C + GHFAR+C
Sbjct: 306 PQSSSGDEMDDRNKRRNNFMSSIVCHICGSKGHFARDC 343
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+CY C GH + +C Q+ CY C GH AR C +++
Sbjct: 404 RCYGCGKTGHLKRNCKQQK------------CYHCGKPGHQARNCRSKN 440
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90
I+C+NC GH +C A RG C+KC GH ++C E
Sbjct: 393 IKCFNCGKEGHLARNC----KAPRRGG-----CWKCGQEGHQMKDCKNE 432
>sp|O91079|GAG_HV1YF Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag PE=3 SV=3
Length = 512
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90
I+C+NC GH +C A RG C+KC GH ++C E
Sbjct: 393 IKCFNCGKEGHLARNC----KAPRRGG-----CWKCGQEGHQMKDCKNE 432
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 42 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATES 91
+QC+NC GH +C P+K C++C GH ++C T +
Sbjct: 417 LQCFNCGKVGHTARNCRAPRKKG-----------CWRCGQEGHQMKDCTTRN 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,355,853
Number of Sequences: 539616
Number of extensions: 1118993
Number of successful extensions: 3570
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 3000
Number of HSP's gapped (non-prelim): 566
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)