Query psy16623
Match_columns 93
No_of_seqs 118 out of 1016
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:39:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a51_A Nucleocapsid protein; s 99.5 1.6E-15 5.3E-20 81.4 2.5 39 42-89 1-39 (39)
2 2bl6_A Nucleocapsid protein P1 99.5 1.7E-15 5.8E-20 80.4 2.6 36 43-89 2-37 (37)
3 2ec7_A GAG polyprotein (PR55GA 99.5 4.3E-15 1.5E-19 83.3 3.3 44 39-91 4-47 (49)
4 1cl4_A Protein (GAG polyprotei 99.5 6.9E-15 2.4E-19 85.3 1.9 49 42-91 2-50 (60)
5 2ihx_A Nucleocapsid (NC) prote 99.5 2.1E-14 7E-19 83.8 3.9 47 41-91 4-50 (61)
6 1a1t_A Nucleocapsid protein; s 99.5 1.2E-14 4.1E-19 83.0 2.7 43 40-91 11-53 (55)
7 2cqf_A RNA-binding protein LIN 99.5 1.9E-14 6.4E-19 84.5 3.3 44 39-90 5-48 (63)
8 2li8_A Protein LIN-28 homolog 99.4 6.2E-14 2.1E-18 84.8 3.0 45 39-91 22-66 (74)
9 3ts2_A Protein LIN-28 homolog 99.4 4E-13 1.4E-17 90.5 3.7 42 42-91 98-139 (148)
10 3nyb_B Protein AIR2; polya RNA 99.3 1.8E-12 6E-17 80.0 3.4 52 40-91 4-66 (83)
11 2lli_A Protein AIR2; RNA surve 99.1 2.1E-11 7.1E-16 79.3 3.6 50 41-90 64-124 (124)
12 2lli_A Protein AIR2; RNA surve 99.0 1E-10 3.6E-15 75.9 3.2 41 42-90 43-83 (124)
13 2li8_A Protein LIN-28 homolog 98.8 1E-09 3.4E-14 66.2 2.1 42 49-90 1-43 (74)
14 1dsq_A Nucleic acid binding pr 98.6 1.7E-08 5.7E-13 49.4 1.5 20 72-91 3-22 (26)
15 1dsq_A Nucleic acid binding pr 98.3 1.8E-07 6.2E-12 45.6 1.3 21 41-61 2-22 (26)
16 1a6b_B Momulv, zinc finger pro 98.3 2E-07 6.8E-12 50.0 1.5 20 72-91 11-30 (40)
17 1nc8_A Nucleocapsid protein; H 98.2 3.6E-07 1.2E-11 45.6 1.2 19 72-90 7-25 (29)
18 1nc8_A Nucleocapsid protein; H 98.2 5.7E-07 1.9E-11 44.8 1.8 22 40-61 5-26 (29)
19 1a6b_B Momulv, zinc finger pro 98.2 9E-07 3.1E-11 47.4 2.6 23 41-63 10-32 (40)
20 1u6p_A GAG polyprotein; MLV, A 98.2 6.2E-07 2.1E-11 51.3 1.6 20 72-91 24-43 (56)
21 2ysa_A Retinoblastoma-binding 98.0 7.3E-07 2.5E-11 50.8 0.4 17 72-88 8-24 (55)
22 1u6p_A GAG polyprotein; MLV, A 97.9 5.9E-06 2E-10 47.2 2.7 22 41-62 23-44 (56)
23 2a51_A Nucleocapsid protein; s 97.8 5.5E-06 1.9E-10 43.6 1.4 18 73-90 2-19 (39)
24 2bl6_A Nucleocapsid protein P1 97.8 7.2E-06 2.5E-10 42.7 1.3 18 73-90 2-19 (37)
25 2ysa_A Retinoblastoma-binding 97.7 1.2E-05 4E-10 45.8 1.4 22 40-61 6-27 (55)
26 1cl4_A Protein (GAG polyprotei 97.7 5.7E-06 1.9E-10 47.2 0.0 19 72-90 2-20 (60)
27 2ec7_A GAG polyprotein (PR55GA 97.7 1.3E-05 4.4E-10 44.2 1.4 19 72-90 7-25 (49)
28 2cqf_A RNA-binding protein LIN 97.6 2.6E-05 8.8E-10 45.1 2.2 19 72-90 8-26 (63)
29 2ihx_A Nucleocapsid (NC) prote 97.6 2.5E-05 8.5E-10 44.8 1.8 19 72-90 5-23 (61)
30 1a1t_A Nucleocapsid protein; s 97.5 2.4E-05 8.2E-10 43.8 1.3 19 72-90 13-31 (55)
31 3nyb_B Protein AIR2; polya RNA 97.5 4.1E-05 1.4E-09 46.7 1.9 23 40-62 45-67 (83)
32 3ts2_A Protein LIN-28 homolog 96.8 0.00047 1.6E-08 45.9 1.7 21 41-61 119-139 (148)
33 2hqh_E Restin; beta/BETA struc 88.8 0.13 4.5E-06 24.6 0.8 18 73-90 5-22 (26)
34 2pzo_E CAP-Gly domain-containi 78.0 0.7 2.4E-05 24.4 0.8 19 72-90 21-39 (42)
35 3alr_A Nanos protein; zinc-fin 67.9 0.94 3.2E-05 28.5 -0.3 42 41-91 36-94 (106)
36 3e2u_E CAP-Gly domain-containi 63.6 2.3 7.9E-05 22.4 0.8 19 72-90 21-39 (42)
37 1ef4_A Subunit N, DNA-directed 35.4 11 0.00039 20.8 0.7 10 41-50 3-12 (55)
38 4ayb_N DNA-directed RNA polyme 30.2 12 0.00041 21.5 0.2 10 41-50 4-13 (66)
39 1twf_J DNA-directed RNA polyme 23.1 20 0.00067 20.8 0.2 10 41-50 4-13 (70)
40 2yuc_A TNF receptor-associated 21.8 66 0.0023 17.5 2.4 31 50-91 33-70 (76)
No 1
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.55 E-value=1.6e-15 Score=81.38 Aligned_cols=39 Identities=28% Similarity=0.695 Sum_probs=34.9
Q ss_pred cceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCC
Q psy16623 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 89 (93)
Q Consensus 42 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~ 89 (93)
+.||+|++.||++++||.+. . ..||+|++.||++++||+
T Consensus 1 i~C~~Cg~~GH~a~~C~~~~----~-----~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQPR----Q-----EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSCC----C-----SSCTTTCCSSSCTTTSCC
T ss_pred CeeeccCCCCcccccCCCCC----C-----CccccCCCCCCccCcCcC
Confidence 36999999999999999863 2 689999999999999985
No 2
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.55 E-value=1.7e-15 Score=80.39 Aligned_cols=36 Identities=42% Similarity=1.068 Sum_probs=33.7
Q ss_pred ceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCC
Q psy16623 43 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 89 (93)
Q Consensus 43 ~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~ 89 (93)
.||+|++.||++++||.+ ..||+|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~-----------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP-----------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB-----------TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc-----------CeEccCCCcCCccCcCcC
Confidence 699999999999999986 579999999999999986
No 3
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.53 E-value=4.3e-15 Score=83.26 Aligned_cols=44 Identities=32% Similarity=0.759 Sum_probs=38.3
Q ss_pred CCCcceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCCC
Q psy16623 39 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 39 ~~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
.+...||+|++.||++++||.+. . ..||+||+.||++++||+..
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~~----~-----~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAPR----R-----QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCSS----C-----CSCSSSCCSSCCGGGCCSSC
T ss_pred CCcCeeeecCCCCcChhhCcCCC----C-----CeeCcCCCcCCccCCCcCCC
Confidence 34568999999999999999863 2 67999999999999999864
No 4
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.48 E-value=6.9e-15 Score=85.31 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=18.6
Q ss_pred cceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCCC
Q psy16623 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 42 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
..||+|++.||++++||........ ......||+|++.||+|++||+..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~~-~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNAE-PKVPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp ----------------------------CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CccccCCCCCcCHhhCcCCCCCccc-cCCCcceeECCCCCCccCcCCCcc
Confidence 4699999999999999987421110 001268999999999999999754
No 5
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.48 E-value=2.1e-14 Score=83.76 Aligned_cols=47 Identities=36% Similarity=0.758 Sum_probs=38.2
Q ss_pred CcceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCCC
Q psy16623 41 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 41 ~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
...||+|++.||++++||.... .. .....||+|++.||+|++||+..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~--~~--~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRK--SG--NSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTS--SS--CCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCcccccCCCCeehhhCcCCcC--CC--CCCCeeCCCCCCCCCcCCCcCCC
Confidence 4679999999999999998752 11 11267999999999999999864
No 6
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=99.48 E-value=1.2e-14 Score=82.96 Aligned_cols=43 Identities=30% Similarity=0.806 Sum_probs=37.8
Q ss_pred CCcceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCCC
Q psy16623 40 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
+...||+|++.||++++||.+. . ..||+|++.||++++||+..
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~~----~-----~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAPR----K-----KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSCS----C-----CBCTTTCCBSSCGGGCSSSC
T ss_pred CCcceeeeCCCCcChhhcCCCC----C-----CEeCCCCCcCCccCCCcCcC
Confidence 4568999999999999999863 2 68999999999999999864
No 7
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=84.52 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=37.7
Q ss_pred CCCcceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCC
Q psy16623 39 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90 (93)
Q Consensus 39 ~~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~ 90 (93)
.+...||+|++.||++++||.+. +. ..||+|++.||+|++||+.
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~~~---~~-----~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKLPP---QP-----KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCSCC---CS-----SCCTTTCCSSSCTTTCTGG
T ss_pred CCCCcccccCCCCcChhhCCCCC---CC-----CccCCcCCcCCccCcCCCc
Confidence 34568999999999999999763 22 6899999999999999874
No 8
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.42 E-value=6.2e-14 Score=84.84 Aligned_cols=45 Identities=22% Similarity=0.553 Sum_probs=38.1
Q ss_pred CCCcceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCCC
Q psy16623 39 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 39 ~~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
.+...||+|++.||++++|+... .. ..||+|++.||++++||+..
T Consensus 22 ~r~~~C~~Cg~~GH~a~~C~~~~---~~-----~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 22 SKGDRCYNCGGLDHHAKECKLPP---QP-----KKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp STTSCCTTTCCSSSCTTTCSSCC---CC-----CCCTTTCCTTSCGGGCTTGG
T ss_pred CCCCcccccCCcCcCcccCCCCC---CC-----CccCCcCCcCCccCcCcCCc
Confidence 35578999999999999999753 22 68999999999999999753
No 9
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.35 E-value=4e-13 Score=90.46 Aligned_cols=42 Identities=24% Similarity=0.589 Sum_probs=36.9
Q ss_pred cceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCCC
Q psy16623 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 42 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
..||+|++.||++++||.+. .. ..||+|++.||++++||+..
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~---~~-----~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPP---QP-----KKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCC---CC-----CCCTTTCCSSCCGGGCTTTT
T ss_pred CcccEeCCccchhhhCCCCC---CC-----CcccccCCcCCEeccCcCCC
Confidence 46999999999999999863 22 68999999999999999865
No 10
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.8e-12 Score=79.99 Aligned_cols=52 Identities=29% Similarity=0.595 Sum_probs=36.4
Q ss_pred CCcceeecCCCCccccccCCCCCCCC---CC--------CcccccceeccccccccccCCCCC
Q psy16623 40 STIQCYNCFDFGHYQYSCPQKSSADA---RG--------DKVGIVCYKCNNYGHFARECATES 91 (93)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~C~~~~~~~~---~~--------~~~~~~C~~Cg~~GH~ar~C~~~~ 91 (93)
+.+.||+|++.||++++||+...-.. .+ ......||+||+.|||++|||+..
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSCC
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCccc
Confidence 34689999999999999997531100 00 011367999999999999999864
No 11
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.1e-11 Score=79.27 Aligned_cols=50 Identities=30% Similarity=0.635 Sum_probs=36.9
Q ss_pred CcceeecCCCCccccccCCCCCCC------CC---C--CcccccceeccccccccccCCCC
Q psy16623 41 TIQCYNCFDFGHYQYSCPQKSSAD------AR---G--DKVGIVCYKCNNYGHFARECATE 90 (93)
Q Consensus 41 ~~~C~~Cg~~GH~~~~C~~~~~~~------~~---~--~~~~~~C~~Cg~~GH~ar~C~~~ 90 (93)
...||+|++.||++++||...... .. + ......||+|++.||||+|||+.
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCCC
T ss_pred CccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcCC
Confidence 467999999999999999764210 00 0 01237899999999999999974
No 12
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=1e-10 Score=75.90 Aligned_cols=41 Identities=34% Similarity=0.836 Sum_probs=33.0
Q ss_pred cceeecCCCCccccccCCCCCCCCCCCcccccceeccccccccccCCCC
Q psy16623 42 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 90 (93)
Q Consensus 42 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+|++.||++++||... +. ..||+|++.||++++||+.
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~---~~-----~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKW---KK-----VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCC---CC-----CSSSSSCSSCCCTTTCCCS
T ss_pred ccccccCCCCCccccCcCcc---cC-----ccCCCCCcCCcchhhCCCc
Confidence 46888888888888888753 22 6799999999999999975
No 13
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.84 E-value=1e-09 Score=66.20 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=21.0
Q ss_pred CCCccccccCCCCCCCCC-CCcccccceeccccccccccCCCC
Q psy16623 49 DFGHYQYSCPQKSSADAR-GDKVGIVCYKCNNYGHFARECATE 90 (93)
Q Consensus 49 ~~GH~~~~C~~~~~~~~~-~~~~~~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+++||+.+...... +......||+|++.||++++|+..
T Consensus 1 ~~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 1 SSGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp -----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSC
T ss_pred CCccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCC
Confidence 369999999987643211 111236799999999999999963
No 14
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.57 E-value=1.7e-08 Score=49.41 Aligned_cols=20 Identities=40% Similarity=1.067 Sum_probs=13.3
Q ss_pred ccceeccccccccccCCCCC
Q psy16623 72 IVCYKCNNYGHFARECATES 91 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~~ 91 (93)
..||+||+.||+|++||+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 45777777777777776654
No 15
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.30 E-value=1.8e-07 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=18.2
Q ss_pred CcceeecCCCCccccccCCCC
Q psy16623 41 TIQCYNCFDFGHYQYSCPQKS 61 (93)
Q Consensus 41 ~~~C~~Cg~~GH~~~~C~~~~ 61 (93)
+..||+|++.||++++||.+.
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 357999999999999999874
No 16
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.30 E-value=2e-07 Score=50.02 Aligned_cols=20 Identities=30% Similarity=0.841 Sum_probs=16.1
Q ss_pred ccceeccccccccccCCCCC
Q psy16623 72 IVCYKCNNYGHFARECATES 91 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~~ 91 (93)
..||+||+.||||++||+..
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 57888888888888888753
No 17
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.21 E-value=3.6e-07 Score=45.55 Aligned_cols=19 Identities=42% Similarity=1.017 Sum_probs=14.3
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+||++||++++|+.+
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 5688888888888888764
No 18
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.20 E-value=5.7e-07 Score=44.83 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.3
Q ss_pred CCcceeecCCCCccccccCCCC
Q psy16623 40 STIQCYNCFDFGHYQYSCPQKS 61 (93)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~C~~~~ 61 (93)
+...||+|++.||++++|+.+.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSS
T ss_pred CCCEEEECCccccCHhHCcccc
Confidence 4568999999999999999874
No 19
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.19 E-value=9e-07 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=20.2
Q ss_pred CcceeecCCCCccccccCCCCCC
Q psy16623 41 TIQCYNCFDFGHYQYSCPQKSSA 63 (93)
Q Consensus 41 ~~~C~~Cg~~GH~~~~C~~~~~~ 63 (93)
...||+|++.||++++||.....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~~ 32 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPRG 32 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCC
T ss_pred CCeeeECCCCCcchhhCcCCccc
Confidence 46899999999999999998643
No 20
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.15 E-value=6.2e-07 Score=51.32 Aligned_cols=20 Identities=30% Similarity=0.841 Sum_probs=17.2
Q ss_pred ccceeccccccccccCCCCC
Q psy16623 72 IVCYKCNNYGHFARECATES 91 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~~ 91 (93)
..||+||+.||||+|||+..
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 67999999999999998754
No 21
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=7.3e-07 Score=50.84 Aligned_cols=17 Identities=29% Similarity=1.185 Sum_probs=12.5
Q ss_pred ccceeccccccccccCC
Q psy16623 72 IVCYKCNNYGHFARECA 88 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~ 88 (93)
..||+||+.||++++||
T Consensus 8 ~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCCTTTCCTTSCGGGCS
T ss_pred CccccCCCcCcccccCC
Confidence 56777777777777777
No 22
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.92 E-value=5.9e-06 Score=47.20 Aligned_cols=22 Identities=36% Similarity=0.804 Sum_probs=19.5
Q ss_pred CcceeecCCCCccccccCCCCC
Q psy16623 41 TIQCYNCFDFGHYQYSCPQKSS 62 (93)
Q Consensus 41 ~~~C~~Cg~~GH~~~~C~~~~~ 62 (93)
...||+|++.||+++|||....
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 4679999999999999998763
No 23
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.82 E-value=5.5e-06 Score=43.60 Aligned_cols=18 Identities=39% Similarity=0.979 Sum_probs=16.7
Q ss_pred cceeccccccccccCCCC
Q psy16623 73 VCYKCNNYGHFARECATE 90 (93)
Q Consensus 73 ~C~~Cg~~GH~ar~C~~~ 90 (93)
.||+|++.||++++||++
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999975
No 24
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.77 E-value=7.2e-06 Score=42.67 Aligned_cols=18 Identities=33% Similarity=1.071 Sum_probs=16.6
Q ss_pred cceeccccccccccCCCC
Q psy16623 73 VCYKCNNYGHFARECATE 90 (93)
Q Consensus 73 ~C~~Cg~~GH~ar~C~~~ 90 (93)
.||+|++.||++++||.+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 599999999999999974
No 25
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=1.2e-05 Score=45.80 Aligned_cols=22 Identities=36% Similarity=0.877 Sum_probs=18.7
Q ss_pred CCcceeecCCCCccccccCCCC
Q psy16623 40 STIQCYNCFDFGHYQYSCPQKS 61 (93)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~C~~~~ 61 (93)
....||+|++.||++++||+..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGGG
T ss_pred CCCccccCCCcCcccccCCCCC
Confidence 3557999999999999999553
No 26
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.68 E-value=5.7e-06 Score=47.25 Aligned_cols=19 Identities=42% Similarity=1.078 Sum_probs=0.0
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+|++.||+|++||+.
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 5799999999999999985
No 27
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.67 E-value=1.3e-05 Score=44.19 Aligned_cols=19 Identities=42% Similarity=1.017 Sum_probs=17.7
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+|++.||++++||..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 6899999999999999975
No 28
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=2.6e-05 Score=45.11 Aligned_cols=19 Identities=37% Similarity=0.887 Sum_probs=17.4
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+|++.||++++||..
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSC
T ss_pred CcccccCCCCcChhhCCCC
Confidence 6799999999999999964
No 29
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.58 E-value=2.5e-05 Score=44.83 Aligned_cols=19 Identities=32% Similarity=1.018 Sum_probs=17.8
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+|++.||++++||..
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTT
T ss_pred CcccccCCCCeehhhCcCC
Confidence 6799999999999999985
No 30
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.54 E-value=2.4e-05 Score=43.83 Aligned_cols=19 Identities=32% Similarity=1.041 Sum_probs=17.6
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
..||+|++.||++++||..
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSC
T ss_pred cceeeeCCCCcChhhcCCC
Confidence 6799999999999999975
No 31
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.48 E-value=4.1e-05 Score=46.73 Aligned_cols=23 Identities=48% Similarity=0.912 Sum_probs=20.0
Q ss_pred CCcceeecCCCCccccccCCCCC
Q psy16623 40 STIQCYNCFDFGHYQYSCPQKSS 62 (93)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~C~~~~~ 62 (93)
..+.||+|++.||+++|||...+
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSCCS
T ss_pred CCCeecccCCCCcCcccCCcccc
Confidence 35789999999999999998753
No 32
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.77 E-value=0.00047 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.1
Q ss_pred CcceeecCCCCccccccCCCC
Q psy16623 41 TIQCYNCFDFGHYQYSCPQKS 61 (93)
Q Consensus 41 ~~~C~~Cg~~GH~~~~C~~~~ 61 (93)
...||+|++.||++++||+..
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 568999999999999999875
No 33
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=88.80 E-value=0.13 Score=24.63 Aligned_cols=18 Identities=33% Similarity=1.001 Sum_probs=11.1
Q ss_pred cceeccccccccccCCCC
Q psy16623 73 VCYKCNNYGHFARECATE 90 (93)
Q Consensus 73 ~C~~Cg~~GH~ar~C~~~ 90 (93)
-|-.|...||.+.+|++.
T Consensus 5 YCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 5 YCEICEMFGHWATNCNDD 22 (26)
T ss_dssp EETTTTEESSCGGGCCTT
T ss_pred cchHHHHhCcccccCCcc
Confidence 466666666666666543
No 34
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=77.99 E-value=0.7 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=13.5
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
.-|-.|...||++.+|+..
T Consensus 21 pYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 21 PYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred cccccccccCcccccCCcc
Confidence 4577777777777777654
No 35
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=67.87 E-value=0.94 Score=28.49 Aligned_cols=42 Identities=31% Similarity=0.600 Sum_probs=29.0
Q ss_pred CcceeecCCCC--------ccccc------cCCCCCCCCCCCcccccceeccccc---cccccCCCCC
Q psy16623 41 TIQCYNCFDFG--------HYQYS------CPQKSSADARGDKVGIVCYKCNNYG---HFARECATES 91 (93)
Q Consensus 41 ~~~C~~Cg~~G--------H~~~~------C~~~~~~~~~~~~~~~~C~~Cg~~G---H~ar~C~~~~ 91 (93)
...|-.|...| |..+| ||-.. . ..|-.||..| |..+-||...
T Consensus 36 ~~~C~FCrnNGE~~~vy~SH~LKd~~G~V~CPvLR----~-----Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 36 RKFCSFCKHNGETEAVYTSHYLKNRDGDVMCPYLR----Q-----YKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp --CCHHHHHTTCCHHHHTSBCSBCTTSCBCCTTGG----G-----CCCTTTCCCGGGCCCGGGCTTCG
T ss_pred CCEeECCCCCCcccCccccceeECCCCCCcCCCcc----c-----ccCCCCCCcCCcccceecCCCCC
Confidence 45687787666 66666 66553 1 6799998888 7888899754
No 36
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=63.63 E-value=2.3 Score=22.45 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=14.3
Q ss_pred ccceeccccccccccCCCC
Q psy16623 72 IVCYKCNNYGHFARECATE 90 (93)
Q Consensus 72 ~~C~~Cg~~GH~ar~C~~~ 90 (93)
.-|-.|--+||+..+|+..
T Consensus 21 pYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 21 PYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred cccccceecccccccCCcc
Confidence 4677888888888888764
No 37
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=35.41 E-value=11 Score=20.83 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=6.1
Q ss_pred CcceeecCCC
Q psy16623 41 TIQCYNCFDF 50 (93)
Q Consensus 41 ~~~C~~Cg~~ 50 (93)
++.||.||+.
T Consensus 3 PVRCFTCGkv 12 (55)
T 1ef4_A 3 PVRCLSCGKP 12 (55)
T ss_dssp SSSCSCTTSC
T ss_pred CeecCCCCCC
Confidence 3567777653
No 38
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=30.24 E-value=12 Score=21.49 Aligned_cols=10 Identities=30% Similarity=1.049 Sum_probs=6.6
Q ss_pred CcceeecCCC
Q psy16623 41 TIQCYNCFDF 50 (93)
Q Consensus 41 ~~~C~~Cg~~ 50 (93)
++.||.||+.
T Consensus 4 PVRCFTCGkv 13 (66)
T 4ayb_N 4 PIRCFTCGSL 13 (66)
T ss_dssp CSBCTTTCCB
T ss_pred CcccCCCcHh
Confidence 4567777763
No 39
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=23.11 E-value=20 Score=20.78 Aligned_cols=10 Identities=20% Similarity=0.969 Sum_probs=6.5
Q ss_pred CcceeecCCC
Q psy16623 41 TIQCYNCFDF 50 (93)
Q Consensus 41 ~~~C~~Cg~~ 50 (93)
++.||-||+.
T Consensus 4 PVRCFTCGkv 13 (70)
T 1twf_J 4 PVRCFSCGKV 13 (70)
T ss_dssp CSBCTTTCCB
T ss_pred CeecCCCCCC
Confidence 4567777764
No 40
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=21.82 E-value=66 Score=17.52 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=21.3
Q ss_pred CCccccccCCCCCCCCCCCcccccceeccccc-------cccccCCCCC
Q psy16623 50 FGHYQYSCPQKSSADARGDKVGIVCYKCNNYG-------HFARECATES 91 (93)
Q Consensus 50 ~GH~~~~C~~~~~~~~~~~~~~~~C~~Cg~~G-------H~ar~C~~~~ 91 (93)
.-|...+||... ..|-.|+..- |. .+||...
T Consensus 33 ~~H~~~~C~~r~----------v~C~~C~~~~~~~~l~~H~-~~Cp~~~ 70 (76)
T 2yuc_A 33 PAHLQHDCPKRR----------LKCEFCGCDFSGEAYESHE-GMCPQES 70 (76)
T ss_dssp TTTTTTSCTTSC----------CCCSSSCCCCCHHHHHHTT-TSCTTSS
T ss_pred HhhCHhhCCCcc----------eECCCCCCccCHHHHHHHH-hHCCCCc
Confidence 457777888875 6788887655 76 5777643
Done!