Query psy16627
Match_columns 713
No_of_seqs 260 out of 741
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:43:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1985|consensus 100.0 5E-144 1E-148 1190.5 61.0 690 21-713 165-885 (887)
2 KOG1984|consensus 100.0 1E-125 3E-130 1044.4 57.2 677 27-713 288-1002(1007)
3 PLN00162 transport protein sec 100.0 5E-124 1E-128 1093.6 61.0 637 27-712 10-757 (761)
4 KOG1986|consensus 100.0 2E-122 4E-127 1005.5 54.4 619 46-712 21-740 (745)
5 PTZ00395 Sec24-related protein 100.0 9E-121 2E-125 1046.1 61.2 576 124-713 950-1553(1560)
6 COG5028 Vesicle coat complex C 100.0 3E-116 7E-121 961.9 60.4 682 21-713 145-859 (861)
7 COG5047 SEC23 Vesicle coat com 100.0 5E-110 1E-114 885.1 41.6 621 46-711 21-749 (755)
8 cd01479 Sec24-like Sec24-like: 100.0 5.5E-55 1.2E-59 450.0 26.0 241 124-364 1-243 (244)
9 cd01468 trunk_domain trunk dom 100.0 7.2E-51 1.6E-55 419.4 25.9 234 124-359 1-239 (239)
10 PF04811 Sec23_trunk: Sec23/Se 100.0 1.4E-49 3.1E-54 411.1 21.5 236 124-361 1-243 (243)
11 cd01478 Sec23-like Sec23-like: 100.0 1E-48 2.2E-53 406.7 20.8 216 124-344 1-258 (267)
12 PF08033 Sec23_BS: Sec23/Sec24 99.9 2.4E-21 5.2E-26 171.0 9.9 85 366-450 1-96 (96)
13 PF04815 Sec23_helical: Sec23/ 99.8 1.7E-20 3.8E-25 167.7 11.3 102 462-564 1-103 (103)
14 PRK13685 hypothetical protein; 98.7 6.8E-07 1.5E-11 96.7 18.3 161 125-341 87-275 (326)
15 cd01453 vWA_transcription_fact 98.6 1.9E-06 4E-11 85.4 15.9 163 129-360 6-178 (183)
16 cd01456 vWA_ywmD_type VWA ywmD 98.5 2.6E-06 5.6E-11 86.0 15.2 172 123-336 17-196 (206)
17 cd01467 vWA_BatA_type VWA BatA 98.5 3.6E-06 7.8E-11 82.7 15.8 156 127-341 3-176 (180)
18 cd01465 vWA_subgroup VWA subgr 98.5 6.1E-06 1.3E-10 80.0 17.2 156 129-342 3-163 (170)
19 cd01466 vWA_C3HC4_type VWA C3H 98.5 2.9E-06 6.2E-11 81.7 13.8 147 129-339 3-154 (155)
20 cd01451 vWA_Magnesium_chelatas 98.5 9.1E-06 2E-10 80.0 17.5 159 128-344 2-169 (178)
21 cd01463 vWA_VGCC_like VWA Volt 98.4 7.3E-06 1.6E-10 81.6 16.6 166 123-341 10-188 (190)
22 TIGR00868 hCaCC calcium-activa 98.3 4.1E-05 9E-10 91.0 21.9 167 127-361 305-477 (863)
23 cd01472 vWA_collagen von Wille 98.2 4.5E-05 9.7E-10 73.9 15.9 151 129-341 3-163 (164)
24 cd01452 VWA_26S_proteasome_sub 98.2 5.1E-05 1.1E-09 75.0 15.1 142 128-331 5-160 (187)
25 PF13519 VWA_2: von Willebrand 98.2 3.2E-05 6.9E-10 74.5 13.4 151 129-340 2-159 (172)
26 cd01474 vWA_ATR ATR (Anthrax T 98.1 0.00011 2.3E-09 72.9 16.8 157 126-343 4-168 (185)
27 TIGR03436 acidobact_VWFA VWFA- 98.1 0.00017 3.8E-09 76.9 18.2 159 124-339 51-238 (296)
28 cd01470 vWA_complement_factors 98.1 0.00014 3E-09 72.9 16.3 168 129-343 3-191 (198)
29 cd01461 vWA_interalpha_trypsin 98.0 0.00017 3.6E-09 69.9 15.6 158 126-342 2-162 (171)
30 PF13768 VWA_3: von Willebrand 98.0 8.3E-05 1.8E-09 71.2 13.3 149 129-337 3-154 (155)
31 TIGR03788 marine_srt_targ mari 98.0 0.0048 1E-07 72.4 29.2 285 123-503 268-557 (596)
32 cd01475 vWA_Matrilin VWA_Matri 97.9 0.00022 4.7E-09 73.0 15.0 168 126-360 2-182 (224)
33 cd01480 vWA_collagen_alpha_1-V 97.9 0.00021 4.6E-09 70.8 14.4 161 126-344 2-174 (186)
34 cd01450 vWFA_subfamily_ECM Von 97.9 0.00035 7.5E-09 66.6 14.6 146 129-333 3-156 (161)
35 cd01469 vWA_integrins_alpha_su 97.8 0.00099 2.1E-08 65.5 16.6 156 129-343 3-172 (177)
36 cd01477 vWA_F09G8-8_type VWA F 97.7 0.00053 1.2E-08 68.5 13.6 150 126-332 19-185 (193)
37 cd01482 vWA_collagen_alphaI-XI 97.7 0.001 2.3E-08 64.4 15.3 150 129-340 3-162 (164)
38 cd01471 vWA_micronemal_protein 97.7 0.00084 1.8E-08 66.3 14.6 149 129-331 3-160 (186)
39 PF00626 Gelsolin: Gelsolin re 97.7 7.5E-05 1.6E-09 62.5 5.6 33 589-621 4-36 (76)
40 cd00198 vWFA Von Willebrand fa 97.7 0.0015 3.2E-08 61.4 14.9 148 128-332 2-155 (161)
41 PTZ00441 sporozoite surface pr 97.6 0.0021 4.6E-08 73.0 17.6 164 126-343 42-217 (576)
42 TIGR02031 BchD-ChlD magnesium 97.5 0.002 4.2E-08 75.3 16.9 174 124-343 405-584 (589)
43 cd01481 vWA_collagen_alpha3-VI 97.5 0.0027 5.8E-08 61.8 15.2 152 129-342 3-165 (165)
44 smart00327 VWA von Willebrand 97.4 0.0054 1.2E-07 59.1 16.1 154 127-338 2-164 (177)
45 TIGR02442 Cob-chelat-sub cobal 97.4 0.0019 4E-08 76.2 14.0 160 125-339 464-632 (633)
46 PF00092 VWA: von Willebrand f 97.4 0.0033 7.2E-08 60.9 13.4 155 129-343 2-169 (178)
47 cd01473 vWA_CTRP CTRP for CS 97.4 0.012 2.6E-07 58.8 17.4 150 129-331 3-161 (192)
48 cd01476 VWA_integrin_invertebr 97.3 0.015 3.3E-07 55.9 16.9 104 129-267 3-117 (163)
49 PRK13406 bchD magnesium chelat 97.3 0.01 2.2E-07 69.0 17.8 167 124-344 399-572 (584)
50 cd01464 vWA_subfamily VWA subf 97.1 0.0022 4.7E-08 62.9 8.8 138 129-330 6-159 (176)
51 smart00262 GEL Gelsolin homolo 96.9 0.006 1.3E-07 52.8 9.0 34 593-626 16-49 (90)
52 COG1240 ChlD Mg-chelatase subu 96.9 0.019 4.2E-07 58.7 13.5 166 125-344 77-249 (261)
53 cd01458 vWA_ku Ku70/Ku80 N-ter 96.8 0.038 8.3E-07 56.2 15.0 151 128-318 3-173 (218)
54 cd01454 vWA_norD_type norD typ 96.7 0.043 9.3E-07 53.6 14.2 146 128-319 2-154 (174)
55 PF04056 Ssl1: Ssl1-like; Int 96.6 0.047 1E-06 54.2 13.5 164 132-361 1-173 (193)
56 KOG2884|consensus 95.9 0.2 4.3E-06 49.8 13.3 135 128-321 5-150 (259)
57 cd01462 VWA_YIEM_type VWA YIEM 95.5 0.42 9.2E-06 45.3 14.2 129 129-318 3-135 (152)
58 KOG0443|consensus 95.0 0.056 1.2E-06 62.9 7.5 56 563-627 617-672 (827)
59 COG5148 RPN10 26S proteasome r 94.4 1.7 3.7E-05 42.3 14.5 133 126-316 3-145 (243)
60 TIGR00578 ku70 ATP-dependent D 93.4 1.5 3.3E-05 51.4 15.1 156 127-316 11-182 (584)
61 cd01460 vWA_midasin VWA_Midasi 93.2 2.1 4.5E-05 45.0 14.2 149 125-333 59-222 (266)
62 cd01457 vWA_ORF176_type VWA OR 92.9 0.62 1.3E-05 46.5 9.6 143 128-331 4-165 (199)
63 COG4245 TerY Uncharacterized p 91.9 0.24 5.2E-06 48.3 4.8 100 126-265 4-119 (207)
64 TIGR00627 tfb4 transcription f 91.7 7.1 0.00015 41.3 15.9 81 235-339 117-207 (279)
65 PF03850 Tfb4: Transcription f 91.3 12 0.00027 39.5 17.2 83 237-343 116-209 (276)
66 KOG0443|consensus 87.4 2.9 6.4E-05 49.2 9.7 55 565-626 254-309 (827)
67 PF03731 Ku_N: Ku70/Ku80 N-ter 87.1 2.2 4.7E-05 43.4 7.9 154 128-315 1-172 (224)
68 cd01455 vWA_F11C1-5a_type Von 86.9 35 0.00076 34.0 16.3 95 216-341 75-174 (191)
69 KOG0444|consensus 86.0 1.3 2.8E-05 50.8 5.8 29 593-621 639-667 (1255)
70 KOG2807|consensus 78.5 54 0.0012 35.0 13.7 167 126-360 60-235 (378)
71 KOG0444|consensus 77.2 5.9 0.00013 45.8 6.9 56 561-624 729-788 (1255)
72 PRK10997 yieM hypothetical pro 76.9 47 0.001 38.0 14.0 147 127-341 324-475 (487)
73 KOG2487|consensus 71.7 79 0.0017 33.0 12.7 43 297-342 186-228 (314)
74 KOG2353|consensus 66.9 2E+02 0.0043 36.4 17.1 120 103-252 200-322 (1104)
75 KOG3768|consensus 64.6 77 0.0017 36.6 11.8 32 127-158 2-38 (888)
76 PF09967 DUF2201: VWA-like dom 63.0 14 0.00031 34.1 5.1 94 130-266 2-95 (126)
77 PF11265 Med25_VWA: Mediator c 60.6 1.5E+02 0.0032 30.4 12.2 100 218-338 92-204 (226)
78 PF04810 zf-Sec23_Sec24: Sec23 59.8 1.8 3.8E-05 31.6 -1.2 18 79-96 23-40 (40)
79 smart00187 INB Integrin beta s 51.0 4.1E+02 0.0088 29.9 22.7 272 126-415 99-390 (423)
80 PF06707 DUF1194: Protein of u 48.4 2.2E+02 0.0047 28.8 11.0 67 236-326 94-169 (205)
81 COG2425 Uncharacterized protei 45.4 67 0.0015 36.1 7.6 100 126-264 273-377 (437)
82 PF02905 EBV-NA1: Epstein Barr 45.2 38 0.00081 31.0 4.5 33 145-177 112-145 (146)
83 PF00362 Integrin_beta: Integr 41.8 5.6E+02 0.012 28.9 19.8 266 126-415 102-393 (426)
84 KOG3355|consensus 31.3 47 0.001 32.2 3.1 57 646-713 88-148 (177)
85 PF05762 VWA_CoxE: VWA domain 27.1 98 0.0021 31.4 4.9 32 233-264 126-160 (222)
86 KOG0445|consensus 25.4 62 0.0013 37.9 3.3 40 595-634 363-409 (919)
87 COG4867 Uncharacterized protei 22.0 3.4E+02 0.0074 30.3 7.8 159 126-340 463-634 (652)
No 1
>KOG1985|consensus
Probab=100.00 E-value=4.8e-144 Score=1190.53 Aligned_cols=690 Identities=47% Similarity=0.792 Sum_probs=651.0
Q ss_pred CcchhhHhHhhhhhcccccccccccccccccc--cccccCCCCCCCCCCCCCCCCCCCCC--------------------
Q psy16627 21 YQQQQQQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTRDILPATKVEPPPIRLPQ-------------------- 78 (713)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~p~~~~~p~~~~~~~-------------------- 78 (713)
+..-+..+.|.|+++.|.+.++.+.+..|||. +|+.-+.+-..+|...-.-. +|||.
T Consensus 165 ~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~~~p~~~~~~I-vRCr~CRtYiNPFV~fid~gr~WrC 243 (887)
T KOG1985|consen 165 SSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDIDPLPVITSTLI-VRCRRCRTYINPFVEFIDQGRRWRC 243 (887)
T ss_pred ccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccCCCCcccCCce-eeehhhhhhcCCeEEecCCCceeee
Confidence 33445677899999999999999999999998 44443335556666655433 67773
Q ss_pred ----CCCCCCcccccCCCCCCCCCCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHH
Q psy16627 79 ----NLPEIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLN 154 (713)
Q Consensus 79 ----~~n~~p~~~~~~~~~~~y~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~ 154 (713)
++|+||.+|+++|+++.|+|+++||||++++|||++|.|||.| ||+|++|+|+||||.+++++|+|+++|++|++
T Consensus 244 NlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR-~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~ 322 (887)
T KOG1985|consen 244 NLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR-PPQPAVYVFLIDVSISAIKSGYLETVARSLLE 322 (887)
T ss_pred chhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC-CCCCceEEEEEEeehHhhhhhHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCC
Q psy16627 155 QLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLD 234 (713)
Q Consensus 155 ~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~ 234 (713)
.||.||+++|++|||||||++||||+++.+..+|+|++++|++|+|+|.|++||||++|||+.|+++|++|+.+|.+++.
T Consensus 323 ~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~ 402 (887)
T KOG1985|consen 323 NLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRS 402 (887)
T ss_pred hhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCCCC-CCCCcchHHHHHHHHHHHhhCCeEEEEE
Q psy16627 235 SGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDD-PPHMNPATDFYKKIALECTSFYIAVDLF 313 (713)
Q Consensus 235 ~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~-~~~~~~a~~fY~~La~~~~~~~isvDlf 313 (713)
+++|+|+||++|.++|+.+||||++|++++||.|.|+|+.||+++.++.++ ..++.+++.|||++|.+|++.||+||+|
T Consensus 403 t~~alGpALkaaf~li~~~GGri~vf~s~lPnlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlF 482 (887)
T KOG1985|consen 403 TGSALGPALKAAFNLIGSTGGRISVFQSTLPNLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLF 482 (887)
T ss_pred cccccCHHHHHHHHHHhhcCCeEEEEeccCCCCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEE
Confidence 999999999999999999999999999999999999999999998876654 6899999999999999999999999999
Q ss_pred EecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCccccCC
Q psy16627 314 ILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRST 393 (713)
Q Consensus 314 ~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~~~t 393 (713)
+++.+|.|+|+|+.|+++|||.+|+|++|+.+++.+..+|.++|.|+|+|++||+|+||||||+|++++++||||+.|++
T Consensus 483 l~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~GnFF~RSt 562 (887)
T KOG1985|consen 483 LFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGNFFVRST 562 (887)
T ss_pred eecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeeccccccccceecccccCcH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHHHHH
Q psy16627 394 DLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMA 473 (713)
Q Consensus 394 ~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~llar~a 473 (713)
|++.++++++|++++|++++++.+.. ...+||.|++||.+.|||||||||+++++++++.++|+++|++|++.+|+++|
T Consensus 563 DLla~~~v~~D~sy~~qisiEesl~~-~~~~fQvAlLyT~~~GERRIRV~T~~lpt~~sl~evY~saD~~AI~~lla~~A 641 (887)
T KOG1985|consen 563 DLLALPNVNPDQSYAFQISIEESLTT-GFCVFQVALLYTLSKGERRIRVHTLCLPTVSSLNEVYASADQEAIASLLAKKA 641 (887)
T ss_pred HHhcccCCCCCccceEEEEeehhcCC-ceeEEEeeeeecccCCceeEEEEEeeccccccHHHHHhhcCHHHHHHHHHHHH
Confidence 99999999999999999999999874 56779999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHH
Q psy16627 474 VDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGH--LTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTE 551 (713)
Q Consensus 474 v~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~--~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~ 551 (713)
+++++++++.|||+.|.++++|++..|++..... ....+.+|.+|++||+|+++|+|+++||.++.+++|+|+++++.
T Consensus 642 v~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R~~a~~~ 721 (887)
T KOG1985|consen 642 VEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNGQGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYRAYAMCL 721 (887)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHHHHHHHH
Confidence 9999999999999999999999999999975442 22359999999999999999999999999989999999999999
Q ss_pred HcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhcc
Q psy16627 552 MKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLF 631 (713)
Q Consensus 552 l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lf 631 (713)
++.+++..++.+|||+||++|+++.+++...+++.+++|+.++|+++.+++.|+||||+|..+++|||++++|+++.++|
T Consensus 722 ~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vf 801 (887)
T KOG1985|consen 722 MSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVF 801 (887)
T ss_pred hhcCCHHHHHhhhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCcccccccc
Confidence 99999999999999999999999999887766777899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCC--cHHHHHHhhcccCCCCCCCHHHHHHHH
Q psy16627 632 GFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP--DRMEFYDKLIEDKNAGGMAYYEFLLRI 709 (713)
Q Consensus 632 g~~~~~~~~~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~--~~~~f~~~LvED~~~~~~SY~dfL~~l 709 (713)
|+..+.+++.++.++|+.|++.++++++||.+||+.|.+.+.++|||+++. ..+.|+++||||++.+..||+|||.||
T Consensus 802 g~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~efLq~l 881 (887)
T KOG1985|consen 802 GVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYYEFLQHL 881 (887)
T ss_pred CcchHhhcccccccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996654 578999999999999999999999999
Q ss_pred HHhC
Q psy16627 710 REQV 713 (713)
Q Consensus 710 h~~i 713 (713)
|+||
T Consensus 882 k~qv 885 (887)
T KOG1985|consen 882 KAQV 885 (887)
T ss_pred HHHh
Confidence 9987
No 2
>KOG1984|consensus
Probab=100.00 E-value=1.3e-125 Score=1044.44 Aligned_cols=677 Identities=30% Similarity=0.521 Sum_probs=619.2
Q ss_pred HhHhhhhhcccccccccccccccccc--cccccCCCCC-CCCCCCCC---CCCCCCCC---------------C------
Q psy16627 27 QQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTRD-ILPATKVE---PPPIRLPQ---------------N------ 79 (713)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-~~p~~~~~---p~~~~~~~---------------~------ 79 (713)
-|+|-|+...|-+.++.+.+..+-|. +|++.|.+.+ .+|.+... |+ ||++ |
T Consensus 288 r~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPv--RC~RCkaYinPFmqF~~~gr~f~Cn~ 365 (1007)
T KOG1984|consen 288 RFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPV--RCNRCKAYINPFMQFIDGGRKFICNF 365 (1007)
T ss_pred chheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCc--chhhhhhhcCcceEEecCCceEEecC
Confidence 35556666667788888888888877 6766555533 33444333 55 7763 3
Q ss_pred ---CCCCCcccccCCCC-CCCCCCCCCCccccceEEEEeCCcccCCC-CCCCcEEEEEEEcchhHHhhchHHHHHHHHHH
Q psy16627 80 ---LPEIHEQFLYDRNT-EMFGDPYRRPEIQSATVEYLATADYTVRD-PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLN 154 (713)
Q Consensus 80 ---~n~~p~~~~~~~~~-~~y~d~~~rpEL~~~tvEy~~p~~y~~r~-~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~ 154 (713)
.|++|.+|+.+..+ ++|.|.+.||||+.|||||+++++|+.+. +|.||+|||+||||++++++|.+.++|++|++
T Consensus 366 C~~~n~vp~~yf~~L~~~grr~D~~erpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~ 445 (1007)
T KOG1984|consen 366 CGSKNQVPDDYFNHLGPTGRRVDVEERPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKS 445 (1007)
T ss_pred CCccccCChhhcccCCCcccccccccCchhcccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHH
Confidence 44555554433322 56679999999999999999999999774 89999999999999999999999999999999
Q ss_pred HhhcCC-CCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCC
Q psy16627 155 QLKSMP-GDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSL 233 (713)
Q Consensus 155 ~L~~lp-~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~ 233 (713)
.|+.+| ++++++|||||||++|||||++..+.|++|++|+|++|+|+|+-++++|+..||+..|+.+|++|+.+|.+++
T Consensus 446 ~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk 525 (1007)
T KOG1984|consen 446 VLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSK 525 (1007)
T ss_pred HHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCC
Confidence 999999 5788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhhcCC-CCEEEEEecCCCCCCCC-cccCCCCCCCCCC-CCCCCCcchHHHHHHHHHHHhhCCeEE
Q psy16627 234 DSGSALGPALQAAFKLLQPT-GGRITIFQTCLPNRGPG-ALQSRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYIAV 310 (713)
Q Consensus 234 ~~~~~~G~AL~~A~~ll~~~-GGrI~~F~~g~pt~GpG-~l~~~~~~~~~s~-~~~~~~~~a~~fY~~La~~~~~~~isv 310 (713)
.+++|+|+||++|..+|+.. |||+++|++.+||.|.| ++..|+|.....+ ||++++.++++.|++||++|++.|+||
T Consensus 526 ~pes~~g~alqaa~lalk~~~gGKl~vF~s~Lpt~g~g~kl~~r~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~sv 605 (1007)
T KOG1984|consen 526 IPESVFGSALQAAKLALKAADGGKLFVFHSVLPTAGAGGKLSNRDDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSV 605 (1007)
T ss_pred CCchhHHHHHHHHHHHHhccCCceEEEEecccccccCcccccccchhhhhcccchhhccCcchhHHHHHHHHHHHhCceE
Confidence 99999999999999999986 99999999999999977 8888877666555 667899999999999999999999999
Q ss_pred EEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCccc
Q psy16627 311 DLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFV 390 (713)
Q Consensus 311 Dlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~ 390 (713)
|||+++..|+|+|+++.+++.|||.+|+|..|.. ..|..+|.+||.++++++.||+|+||||||.||++.+|+||+..
T Consensus 606 DlF~t~~ayvDvAtlg~v~~~TgG~vy~Y~~F~a--~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~ 683 (1007)
T KOG1984|consen 606 DLFLTPNAYVDVATLGVVPALTGGQVYKYYPFQA--LTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLM 683 (1007)
T ss_pred EEEEcccceeeeeeecccccccCceeEEecchhh--cccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhh
Confidence 9999999999999999999999999999999996 35789999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHH
Q psy16627 391 RSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLA 470 (713)
Q Consensus 391 ~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~lla 470 (713)
+++++++++.+|.|++++++|++|++|+++..++||+|++||+.+|+||+||+|+++++++.+.++|+++|+|+++++|+
T Consensus 684 ~~~tDiela~lD~dkt~~v~fkhDdkLq~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~ma 763 (1007)
T KOG1984|consen 684 RNPTDIELAALDCDKTLTVEFKHDDKLQDGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMA 763 (1007)
T ss_pred cCCCCccccccccCceeEEEEeccccccCCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHH
Q psy16627 471 KMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT-GSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAM 549 (713)
Q Consensus 471 r~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~-~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~ 549 (713)
|.|+..+..+.++++|+.|++.++++|+.||+.|++..+ ++|+|||+||+||+||++++||..|+. ..++.|+|+|.+
T Consensus 764 K~a~~~i~~~~lk~vre~l~~~~~~iL~~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~-~~~~~DdRi~~~ 842 (1007)
T KOG1984|consen 764 KQAAKAILDKPLKEVREQLVSQCAQILASYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRP-QEIRTDDRIYQL 842 (1007)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccc-cccccchhHHHH
Confidence 999999999999999999999999999999999998554 469999999999999999999999998 589999999999
Q ss_pred HHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhh
Q psy16627 550 TEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSG 629 (713)
Q Consensus 550 ~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~ 629 (713)
..+.++++.+++..+||+|+++|+++.+.... ..+|..+|+|.+.|+.+||||||+|.++|||+|+++++.++|+
T Consensus 843 ~~v~sl~v~~~~~~~YPrl~p~hdl~i~dtl~-----~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~ 917 (1007)
T KOG1984|consen 843 QLVTSLSVEQLMPFFYPRLLPFHDLDIEDTLE-----FVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQD 917 (1007)
T ss_pred HHhhcccHHhhhhhhccceeeeeccccccccc-----cccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHH
Confidence 99999999999999999999999998774322 2466778899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCC-cHHHHHHhhcccCCCCCCCHHHHHHH
Q psy16627 630 LFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP-DRMEFYDKLIEDKNAGGMAYYEFLLR 708 (713)
Q Consensus 630 lfg~~~~~~~~~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~-~~~~f~~~LvED~~~~~~SY~dfL~~ 708 (713)
||++.+.++++..+..||+.||..|+++|++|..+++.|...+|+.+++++.+ ++..|.+.|+||++....||.||||.
T Consensus 918 lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~~r~~~l~v~~~k~g~~~~~~~~~~~lved~~~~~~sY~dyL~~ 997 (1007)
T KOG1984|consen 918 LFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRRQRSSELPVVLVKQGLDGSEVEFSEYLVEDRGRNISSYVDYLCE 997 (1007)
T ss_pred HhcCccccccccccccccccCcHHHHHHHHHHHHHHhccccccccEEEecCCCchhhhhhhhhhcccccCccccchHHHH
Confidence 99999999999988999999999999999999999998889999999999865 45677799999999999999999999
Q ss_pred HHHhC
Q psy16627 709 IREQV 713 (713)
Q Consensus 709 lh~~i 713 (713)
||++|
T Consensus 998 ~H~ki 1002 (1007)
T KOG1984|consen 998 LHKKI 1002 (1007)
T ss_pred HHHHH
Confidence 99986
No 3
>PLN00162 transport protein sec23; Provisional
Probab=100.00 E-value=5e-124 Score=1093.55 Aligned_cols=637 Identities=19% Similarity=0.248 Sum_probs=561.4
Q ss_pred HhHhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCcccccCC
Q psy16627 27 QQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRDILPATKVEPPPIRLPQ---------------NLPEIHEQFLYDR 91 (713)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~p~~~~~~~---------------~~n~~p~~~~~~~ 91 (713)
...|-|++..|.+.++.+.+..|.|.- +-||++.+.+|.++|+|+ ||+. |.|.||+|.++|+
T Consensus 10 ~gvR~s~n~~P~t~~~~~~~~iPlg~v-~tPl~~~~~vp~v~~~pv--RC~~CraylNPf~~~d~~~~~W~C~~C~~~N~ 86 (761)
T PLN00162 10 DGVRMSWNVWPSSKIEASKCVIPLAAL-YTPLKPLPELPVLPYDPL--RCRTCRAVLNPYCRVDFQAKIWICPFCFQRNH 86 (761)
T ss_pred CceEeeeecCCCCHHHHhcCCCCeEEE-EecCCcCCCCCcCCCCCC--ccCCCcCEECCceEEecCCCEEEccCCCCCCC
Confidence 345778889998888888888888762 247777778999999888 6652 7999999999999
Q ss_pred CCCCCC---CCCCCCcc--ccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCce
Q psy16627 92 NTEMFG---DPYRRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTS 166 (713)
Q Consensus 92 ~~~~y~---d~~~rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~ 166 (713)
+|++|. +.++|||| +++||||++|+ |+.+ ++.||+|+||||+|..+++ ++.+|++|+++|+.||+++ +
T Consensus 87 ~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~-~~~~-~~~pp~fvFvID~s~~~~~---l~~lk~sl~~~L~~LP~~a--~ 159 (761)
T PLN00162 87 FPPHYSSISETNLPAELFPQYTTVEYTLPP-GSGG-APSPPVFVFVVDTCMIEEE---LGALKSALLQAIALLPENA--L 159 (761)
T ss_pred CchHhcccCccCCChhhcCCceeEEEECCC-CCCC-CCCCcEEEEEEecchhHHH---HHHHHHHHHHHHHhCCCCC--E
Confidence 999984 57899999 89999999998 8777 8999999999999999887 7888999999999999987 9
Q ss_pred EEEEEEcCeEEEEEcCCCCCCCeeeeec--------CcCc----------------------cCCCCCCCcceehhhhHH
Q psy16627 167 IAIITYDSAVHFYSLAEGQTQPSQMILT--------DIDD----------------------IFLPSPENILVNLSECYD 216 (713)
Q Consensus 167 VglITF~~~V~~y~l~~~~~~~q~~vv~--------dl~d----------------------~f~P~~~~~l~~l~e~~~ 216 (713)
|||||||++||||+|+.+. .++++|+. ++++ .++|.+++||+|++||++
T Consensus 160 VGlITF~s~V~~~~L~~~~-~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~ 238 (761)
T PLN00162 160 VGLITFGTHVHVHELGFSE-CSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEF 238 (761)
T ss_pred EEEEEECCEEEEEEcCCCC-CcceEEecCCccCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHHHHHH
Confidence 9999999999999998754 67777764 2211 234566899999999999
Q ss_pred HHHHHHhhCcc-cc--cCCCCCCCchHHHHHHHHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCCCC---
Q psy16627 217 MIVDLLKQLPG-KF--KDSLDSGSALGPALQAAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSNDD--- 285 (713)
Q Consensus 217 ~i~~lL~~L~~-~~--~~~~~~~~~~G~AL~~A~~ll~----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~-~s~~~--- 285 (713)
.|+++||+|+. .| +.++++.||+|+||++|..+|+ ++||||++|++|+||.|||+|+.++.... ++|++
T Consensus 239 ~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k 318 (761)
T PLN00162 239 TLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDK 318 (761)
T ss_pred HHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCcccccc
Confidence 99999999995 44 6688999999999999999998 68999999999999999999999974432 35532
Q ss_pred --CCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhcc
Q psy16627 286 --PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR 363 (713)
Q Consensus 286 --~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~ 363 (713)
+++++++.+||++||++|+++||+||+|+++.+|+||+||+.|++.|||.+++|++|+. +.|.++|+|.+++
T Consensus 319 ~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~------~~f~~~l~r~~~r 392 (761)
T PLN00162 319 DAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGH------SVFKDSLRRVFER 392 (761)
T ss_pred chhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcCh------HHHHHHHHHHhcc
Confidence 47999999999999999999999999999999999999999999999999999999986 5777778887765
Q ss_pred ------ccccceEEEEEecCCceEEEEecCccc---------------cCCCceeecCCCCCCeEEEEEEeeccc-----
Q psy16627 364 ------KIGFESVMRIRCTKGMSIHTFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDENL----- 417 (713)
Q Consensus 364 ------~~g~~a~l~Vr~S~gl~v~~~~G~~~~---------------~~t~~~~l~~i~~~~s~~~~f~~~~~l----- 417 (713)
++||+|+||||||+|++|+++||||+. ++|+.|+++++++++|++|+|+++++.
T Consensus 393 ~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~ 472 (761)
T PLN00162 393 DGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQ 472 (761)
T ss_pred cccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCC
Confidence 489999999999999999999999963 568899999999999999999998765
Q ss_pred CCCceeEEEEEEEeeecCCCEEEEEEeccccccc--CHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy16627 418 THIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVS--NINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCD 495 (713)
Q Consensus 418 ~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~--~~~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~ 495 (713)
.+.+.+|||||++||+++|+|||||||++++|+. ++.+++++|||||++++|||+|+++++++++.|+++||+++|++
T Consensus 473 ~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li~ 552 (761)
T PLN00162 473 PPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIR 552 (761)
T ss_pred CCCceEEEEEEEEEEcCCCCEEEEEEccccCccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 3457799999999999999999999999999764 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCC
Q psy16627 496 VLSTYKMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLD 575 (713)
Q Consensus 496 ~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~ 575 (713)
++++|+. +.|+.+++|+||++|++||+||||||||++|+++ |+|||||+|+|+.++++++.+++.||||+|++||
T Consensus 553 ~~~~f~~-Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~-n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~--- 627 (761)
T PLN00162 553 LCSKFGD-YRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVF-NNSPDETAYFRMMLNRENVTNSLVMIQPTLISYS--- 627 (761)
T ss_pred HHHHHhh-hcccCCccccCCHHHHHHHHHHHHHhhhhhccCC-CCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEec---
Confidence 9999998 6788888999999999999999999999999987 9999999999999999999999999999999999
Q ss_pred CCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcc-----ccCCCCCc
Q psy16627 576 QDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLE 650 (713)
Q Consensus 576 ~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d 650 (713)
+++ .|. .+.||+++|++|+|||||+|++|+||+|++|++|+ +++|++.|++ +++.|+.|
T Consensus 628 ------~~~--~P~--pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~------~~~~~~~~~~~~~~~~l~~p~~~ 691 (761)
T PLN00162 628 ------FNG--PPE--PVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWR------KAGYHNQPEHEAFAQLLEAPQAD 691 (761)
T ss_pred ------CCC--CCc--ceecchhhccCCceEEEeCCCEEEEEecCcccchh------hcCCCCCcchhhHHHHHHhHHHH
Confidence 332 344 46699999999999999999999999999999999 6777777766 45666666
Q ss_pred hHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHH-Hhhccc---C---C--------CCCCCHHHHHHHHHHh
Q psy16627 651 TQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFY-DKLIED---K---N--------AGGMAYYEFLLRIREQ 712 (713)
Q Consensus 651 ~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~-~~LvED---~---~--------~~~~SY~dfL~~lh~~ 712 (713)
+++ .+.+| ||.|++|+++++++||||+ .+|.=- . . -+++|+..|+.||+|-
T Consensus 692 a~~---------~~~~R--fp~Pr~i~~~~~~SqaRfl~~klnPs~~~~~~~~~~~~~~~~tdd~sl~~f~~~l~~~ 757 (761)
T PLN00162 692 AQA---------IIKER--FPVPRLVVCDQHGSQARFLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRL 757 (761)
T ss_pred HHH---------HHhcC--CCCCeEEEeCCCCcHHHHHHHhcCCcccccCCCCCCCCCeeecCCcCHHHHHHHHHHH
Confidence 655 66677 9999999999999999998 666221 1 0 1468999999999984
No 4
>KOG1986|consensus
Probab=100.00 E-value=1.7e-122 Score=1005.47 Aligned_cols=619 Identities=20% Similarity=0.281 Sum_probs=550.4
Q ss_pred ccccccccccc-------cCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCcccccCCCCCCCC---CCC
Q psy16627 46 MNKMWGYEPHD-------LLNTRDILPATKVEPPPIRLPQ---------------NLPEIHEQFLYDRNTEMFG---DPY 100 (713)
Q Consensus 46 ~~~~~~~~~~~-------~l~~~~~~p~~~~~p~~~~~~~---------------~~n~~p~~~~~~~~~~~y~---d~~ 100 (713)
++|.|+.|+|+ ||+|++.+|+++|+|+ +|+. +.|.||+|+++|++|++|. +.|
T Consensus 21 s~~~~~~~~vvPla~lytPl~e~~~~~~~~y~P~--~C~~C~AvlNPyc~vd~~a~~W~CpfC~qrN~~p~~Y~~is~~n 98 (745)
T KOG1986|consen 21 STRAEASRTVVPLACLYTPLKERPDLPPIQYDPL--RCSKCGAVLNPYCSVDFRAKSWICPFCNQRNPFPPHYSGISENN 98 (745)
T ss_pred CcccccccccccHHHhccccccCCCCCccCCCCc--hhccchhhcCcceeecccCceEeccccccCCCCChhhcccCccC
Confidence 45889999888 8999999999999999 6552 7999999999999999996 679
Q ss_pred CCCcc--ccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEE
Q psy16627 101 RRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHF 178 (713)
Q Consensus 101 ~rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~ 178 (713)
.|+|| +++||||++++ ++..||+|+||||+|+.+.+ |+.++++|+++|+.||+++ +|||||||++|||
T Consensus 99 ~P~el~Pq~stvEy~l~~-----~~~~ppvf~fVvDtc~~eee---L~~LkssL~~~l~lLP~~a--lvGlItfg~~v~v 168 (745)
T KOG1986|consen 99 LPPELLPQYSTVEYTLSP-----GRVSPPVFVFVVDTCMDEEE---LQALKSSLKQSLSLLPENA--LVGLITFGTMVQV 168 (745)
T ss_pred CChhhcCCcceeEEecCC-----CCCCCceEEEEEeeccChHH---HHHHHHHHHHHHhhCCCcc--eEEEEEecceEEE
Confidence 99999 89999999984 24569999999999999877 9999999999999999999 9999999999999
Q ss_pred EEcCCCCCCCeeeeecCc--------Ccc------------CCCCCCCcceehhhhHHHHHHHHhhCc-ccc--cCCCCC
Q psy16627 179 YSLAEGQTQPSQMILTDI--------DDI------------FLPSPENILVNLSECYDMIVDLLKQLP-GKF--KDSLDS 235 (713)
Q Consensus 179 y~l~~~~~~~q~~vv~dl--------~d~------------f~P~~~~~l~~l~e~~~~i~~lL~~L~-~~~--~~~~~~ 235 (713)
|+++... ..+.+|...- .|. +.....+||.|+++|++.++++|++|+ +.| +.++|+
T Consensus 169 ~el~~~~-~sk~~VF~G~ke~s~~q~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp 247 (745)
T KOG1986|consen 169 HELGFEE-CSKSYVFSGNKEYSAKQLLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRP 247 (745)
T ss_pred EEcCCCc-ccceeEEeccccccHHHHHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 9999754 4455553321 111 011125899999999999999999998 577 689999
Q ss_pred CCchHHHHHHHHHhhcC----CCCEEEEEecCCCCCCCCcccCCC--CCCCCCCC-----CCCCCcchHHHHHHHHHHHh
Q psy16627 236 GSALGPALQAAFKLLQP----TGGRITIFQTCLPNRGPGALQSRE--NPNQRSND-----DPPHMNPATDFYKKIALECT 304 (713)
Q Consensus 236 ~~~~G~AL~~A~~ll~~----~GGrI~~F~~g~pt~GpG~l~~~~--~~~~~s~~-----~~~~~~~a~~fY~~La~~~~ 304 (713)
.||||+||++|+.||+. +|+||++|++||||.|||++++++ +|++ +|+ .+++++++.|||++||++++
T Consensus 248 ~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piR-shhdi~~d~a~y~kKa~KfY~~La~r~~ 326 (745)
T KOG1986|consen 248 LRCTGVALSIASGLLEGCFPNTGARIVLFAGGPCTRGPGTVVSRELKEPIR-SHHDIEKDNAPYYKKAIKFYEKLAERLA 326 (745)
T ss_pred ccchhHHHHHHHHHhcccCCCCcceEEEeccCCCCcCCceecchhhcCCCc-CcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984 899999999999999999999997 6666 442 25899999999999999999
Q ss_pred hCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhh--ccccccceEEEEEecCCceEE
Q psy16627 305 SFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL--TRKIGFESVMRIRCTKGMSIH 382 (713)
Q Consensus 305 ~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l--~~~~g~~a~l~Vr~S~gl~v~ 382 (713)
.+||+||||+++.||+|++||++|++.|||.+++.++|+. ++|+++|++.|.|.. .+++||+|+|+|+||++++|+
T Consensus 327 ~~ghvlDifa~~lDQvGi~EMk~l~~~TGG~lvl~dsF~~--s~Fk~sfqR~f~~d~~~~l~~~fn~~leV~tSkdlkI~ 404 (745)
T KOG1986|consen 327 NQGHVLDIFAAALDQVGILEMKPLVESTGGVLVLGDSFNT--SIFKQSFQRIFTRDGEGDLKMGFNGTLEVKTSKDLKIQ 404 (745)
T ss_pred hCCceEeeeeeeccccchHHHHHHhhcCCcEEEEecccch--HHHHHHHHHHhccccccchhhhcCceEEEEecCCcEEE
Confidence 9999999999999999999999999999999999999997 456666655555433 367999999999999999999
Q ss_pred EEecCccc---------------cCCCceeecCCCCCCeEEEEEEeecc--cCCCceeEEEEEEEeeecCCCEEEEEEec
Q psy16627 383 TFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDEN--LTHIQYACFQVAVLYTSSKGDRRIRVHTL 445 (713)
Q Consensus 383 ~~~G~~~~---------------~~t~~~~l~~i~~~~s~~~~f~~~~~--l~~~~~~~iQ~a~lYt~~~G~rriRV~T~ 445 (713)
+++|++.. ++|..|+++.+++.+++++.|++.+. .+.+..+||||+++|+|++|++|+||+|+
T Consensus 405 g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~~t~~s~~fei~~~~~~~~~~~~~iQFiT~Yq~s~g~~riRVtT~ 484 (745)
T KOG1986|consen 405 GVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSPSTTLSLFFEISNQHNIPQSGQGYIQFITQYQHSSGQKRIRVTTL 484 (745)
T ss_pred ecccccccccCCCCccccceeccccccceeeeccCCCceEEEEEEeccccCCCCCCeeEEEEEEEEEcCCCcEEEEEEEe
Confidence 99999863 56889999999999999999999875 34467899999999999999999999999
Q ss_pred ccccccCH-HHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccchHHHH
Q psy16627 446 CLPVVSNI-NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKVLPLY 524 (713)
Q Consensus 446 ~l~vt~~~-~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~ 524 (713)
+++|++.. .++..+|||||+|++|||+++.|+++++..|+++|+|+.||++|++|++ +.|++|++|+|+++|++||+|
T Consensus 485 ~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e~~~d~~rwlDr~Lirlc~kFg~-y~k~dPssf~l~~~fsl~PQf 563 (745)
T KOG1986|consen 485 ARPWADSGSPEISQSFDQEAAAVLMARLALLKAETEDGPDVLRWLDRNLIRLCQKFGD-YRKDDPSSFRLSPNFSLYPQF 563 (745)
T ss_pred ehhhccccchHhhhccchHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHhc-cCCCCchhhcCChhhhhhHHH
Confidence 99999876 6899999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCe
Q psy16627 525 VLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATG 604 (713)
Q Consensus 525 ~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~ 604 (713)
|||||||++|+++ |+|||||+|+||+|.++++++++.||+|+|++|+ +++ .++|++ ||..||.+|.
T Consensus 564 mfhLRRS~fLqvf-NnSPDEt~~yrhll~~e~v~~sliMIqP~L~syS---------f~g--~~epvl--LD~~Si~~D~ 629 (745)
T KOG1986|consen 564 MFHLRRSPFLQVF-NNSPDETAYYRHLLNREDVDNSLIMIQPTLLSYS---------FNG--PPEPVL--LDVASILADR 629 (745)
T ss_pred HHhhccchhhhcc-CCCcchHHHHHHHHhhccchhhhheecceeeeee---------cCC--CCceeE--ecccccCCce
Confidence 9999999999997 9999999999999999999999999999999999 444 356655 9999999999
Q ss_pred EEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcc-----ccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeC
Q psy16627 605 TYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKD 679 (713)
Q Consensus 605 iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~ 679 (713)
|+|||++|+|+||+|++|++|+ +.+|++.||+ +++.|+.|+++ .+++| ||.|++|+++
T Consensus 630 iLLlDt~f~i~i~hG~tIaqWR------~~gy~~~pe~~~f~~LL~ap~~dA~e---------l~~~R--FP~PR~v~~~ 692 (745)
T KOG1986|consen 630 ILLLDTYFTIVIFHGSTIAQWR------KAGYHEQPEYENFKELLEAPREDAQE---------LLLER--FPMPRYVVTD 692 (745)
T ss_pred EEEeecceEEEEECCchHHHHH------hcccccChhhHHHHHHHHhHHHHHHH---------HHHhh--CCCCeEEEec
Confidence 9999999999999999999999 7888888887 67888888887 78888 9999999999
Q ss_pred CCCcHHHHHH-hhcc-----cCC---------CCCCCHHHHHHHHHHh
Q psy16627 680 SSPDRMEFYD-KLIE-----DKN---------AGGMAYYEFLLRIREQ 712 (713)
Q Consensus 680 ~~~~~~~f~~-~LvE-----D~~---------~~~~SY~dfL~~lh~~ 712 (713)
++++||||+. ++.- |.. -+++|+.+|+.||+|-
T Consensus 693 q~GSQARFLlsklnPS~t~~~~~~~~~s~~I~TDDvSlq~fm~hLkkl 740 (745)
T KOG1986|consen 693 QGGSQARFLLSKLNPSETHNNLTAHGGSSIILTDDVSLQVFMEHLKKL 740 (745)
T ss_pred CCccHHHhhhhhcCcchhccchhhccCCCeeeeccccHHHHHHHHHhh
Confidence 9999999994 4432 111 1468999999999873
No 5
>PTZ00395 Sec24-related protein; Provisional
Probab=100.00 E-value=8.7e-121 Score=1046.11 Aligned_cols=576 Identities=24% Similarity=0.390 Sum_probs=528.5
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCC-------------CCCCee
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEG-------------QTQPSQ 190 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~-------------~~~~q~ 190 (713)
++||+|+||||||..|+++|++.++|++|+++|+.|+ +.|++|||||||+.||||+|+.+ .++|||
T Consensus 950 p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~-dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 950 MLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVK-CPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCC-CCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 6899999999999999999999999999999999998 46899999999999999999764 468999
Q ss_pred eeecCcCccCCCCC-CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC--CEEEEEecCCCCC
Q psy16627 191 MILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG--GRITIFQTCLPNR 267 (713)
Q Consensus 191 ~vv~dl~d~f~P~~-~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G--GrI~~F~~g~pt~ 267 (713)
+||+||||+|+|+| +++||++.|+++.|+++|++|+++|.....+.+|+|+||++|..+|+..| |||++|++++|+.
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~SSLPni 1108 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYTTTPNC 1108 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Confidence 99999999999998 89999999999999999999999998888999999999999999999876 9999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccC--chhhcccccCCCceEEEeCCCCCC
Q psy16627 268 GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD--LATLSGVSKFSSGCIHHIPLYSGK 345 (713)
Q Consensus 268 GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~--l~~l~~l~~~TGG~v~~y~~f~~~ 345 (713)
|||+|+.+++ ..++..++.++.+||++||.+|++++|+||+|+++.+++| +++|+.||+.|||.+++|+.|+.
T Consensus 1109 GpGaLK~Re~----~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFna- 1183 (1560)
T PTZ00395 1109 GIGAIKELKK----DLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFLW- 1183 (1560)
T ss_pred CCCccccccc----ccccccccccchHHHHHHHHHHHhcCCceEEEEccCcccccccccccchhcccceeEEEeCCCcc-
Confidence 9999987652 2255567888999999999999999999999999999876 79999999999999999999995
Q ss_pred cchhHHHHHHHHHHhhcc-ccccceEEEEEecCCceEEEEe--cCcc--ccCCCceeecCCCCCCeEEEEEEeecccCCC
Q psy16627 346 NMSHVYQLDRMFSRYLTR-KIGFESVMRIRCTKGMSIHTFH--GNFF--VRSTDLLALPNVNPDAGYGIQISIDENLTHI 420 (713)
Q Consensus 346 ~~~~~~~~~~dl~~~l~~-~~g~~a~l~Vr~S~gl~v~~~~--G~~~--~~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~ 420 (713)
..+..+|..+|.+.+++ ++||+|+||||||+||+|+.+| |+++ .++++++.+|.+++|++|+|+|++++++.+.
T Consensus 1184 -~rD~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~ 1262 (1560)
T PTZ00395 1184 -QKDYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESK 1262 (1560)
T ss_pred -cccHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccCCC
Confidence 35678999999999987 6999999999999999999999 4555 4578999999999999999999999999877
Q ss_pred ceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q psy16627 421 QYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 500 (713)
Q Consensus 421 ~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~~y 500 (713)
..+|||+|++||+.+|+|||||||+++||++++.+||+++|++|++.+|+|+|+.+++++ .++|+.|.+.++++|+.|
T Consensus 1263 ~~AYFQaALLYTSssGERRIRVHTLALPVTSsLseVFrsADqdAIvslLAK~AV~~aLss--sdARe~L~dklVdILtaY 1340 (1560)
T PTZ00395 1263 KQIYFQCACIYTNLWGDRFVRLHTTHMNLTSSLSTVFRYTDAEALMNILIKQLCTNILHN--DNYSKIIIDNLAAILFSY 1340 (1560)
T ss_pred CcEEEEEEEeeccCCCcEEEEEEeeeecccCCHHHHHHhhcHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999987 489999999999999999
Q ss_pred HHhhcCCCCC-ccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCC
Q psy16627 501 KMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPT 579 (713)
Q Consensus 501 r~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~ 579 (713)
|++|++..++ +|+||++||+||+||++|+||++|+. .+++|+|++.++.++++++..++.+|||+||++|++..+.+
T Consensus 1341 RK~CAsssssgQLILPESLKLLPLYILSLLKS~AfRt--~I~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpLHdL~~e~e 1418 (1560)
T PTZ00395 1341 RINCASSAHSGQLILPDTLKLLPLFTSSLLKHNVTKK--EILHDLKVYSLIKLLSMPIISSLLYVYPVMYVIHIKGKTNE 1418 (1560)
T ss_pred HHHhhccCCCccccchhHHHHHHHHHHHHhccccccC--CCCccHHHHHHHHHhCCCHHHHHhhhcCceEEccccccccc
Confidence 9998776544 59999999999999999999999984 58899999999999999999999999999999999754432
Q ss_pred cc--cCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCccccCCCCCchHHhHHH
Q psy16627 580 IE--WNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKL 657 (713)
Q Consensus 580 ~~--~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~l 657 (713)
.. ..++.+.+|+.++||.++|.++||||||+|..+|||||+.++++++++|||+.... ..+.+||++|++.+.||
T Consensus 1419 ~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~---~~~~eLPelDT~iS~RV 1495 (1560)
T PTZ00395 1419 IDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTE---KNAHELNLTDTPNAQKV 1495 (1560)
T ss_pred CCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccc---cccccccCCCCHHHHHH
Confidence 21 12234568999999999999999999999999999999999999999999964222 23457899999999999
Q ss_pred HHHHHHHhhcC--CCcCcEEEEeCCCCcHHHHHHhhcccCCCCCCCHHHHHHHHHHhC
Q psy16627 658 NSFISYLNDDK--AYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713 (713)
Q Consensus 658 ~~~i~~l~~~r--~~~~p~~iv~~~~~~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 713 (713)
|+||+.||+.| +.++|++||+++++.|.+|+++||||++.+.+||+||||+|||+|
T Consensus 1496 rnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~F~s~LVEDRs~g~~SYvDFLc~LHKqI 1553 (1560)
T PTZ00395 1496 QRIIKNLSRIHHFNKYVPLVMVAPKSNEEEHLISLCVEDKADKEYSYVNFLCFIHKLV 1553 (1560)
T ss_pred HHHHHHHHHhccCCCcceEEEEeCCCchHHHHHHhCeecCCCCCCCHHHHHHHHHHHH
Confidence 99999999875 467899999999999999999999999999999999999999986
No 6
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-116 Score=961.87 Aligned_cols=682 Identities=33% Similarity=0.564 Sum_probs=624.4
Q ss_pred CcchhhHhHhhhhhcccccccccccccccccc--cccccCCCCCCCCCCCCCCCCCCCCC---------------CCCCC
Q psy16627 21 YQQQQQQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTRDILPATKVEPPPIRLPQ---------------NLPEI 83 (713)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~p~~~~~p~~~~~~~---------------~~n~~ 83 (713)
++.-+..+.|.|+..-|-+.++.+.+..|.|. ||+.-|.+....+++.-+-.++||+. +.|.|
T Consensus 145 ~~n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~d~~ivRCrrCrsYiNPfv~fi~~g~kw~C 224 (861)
T COG5028 145 QSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVEDGSIVRCRRCRSYINPFVQFIEQGRKWRC 224 (861)
T ss_pred cCCCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCCCCcchhhhhhHhhcCceEEEecCCcEEEE
Confidence 67777889999999999999999999999998 78876666444455555522247763 34444
Q ss_pred ---------CcccccCCC-CCCCCCCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHH
Q psy16627 84 ---------HEQFLYDRN-TEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLL 153 (713)
Q Consensus 84 ---------p~~~~~~~~-~~~y~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~ 153 (713)
|+.|+-+.. ..+|.|.+.|+||.+++|||++|++|+.| .|.||+|||+||||..++++|.+.++.++|+
T Consensus 225 NiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~~~vvdf~ap~~Y~~~-~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il 303 (861)
T COG5028 225 NICRSKNDVPEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLR-QPPPPVYVFLIDVSFEAIKNGLVKAAIRAIL 303 (861)
T ss_pred eeccccccCcccccCcCCCCCccccccccchhhceeeEEecccceeec-cCCCCEEEEEEEeehHhhhcchHHHHHHHHH
Confidence 444432111 23456789999999999999999999999 6779999999999999999999999999999
Q ss_pred HHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC-CCcceehhhhHHHHHHHHhhCcccccC
Q psy16627 154 NQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLPGKFKD 231 (713)
Q Consensus 154 ~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~-~~~l~~l~e~~~~i~~lL~~L~~~~~~ 231 (713)
+.|+.+|+ +.|+||+||.||+.||+++++.+. ..||++++|+|++|+|.+ ..|++|+.+|+..++.||+.++.+|..
T Consensus 304 ~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~-~~~~~~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d 382 (861)
T COG5028 304 ENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDL-DEQMLIVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQD 382 (861)
T ss_pred hhccCCCCCCCcceEEEEEEcceeeEEecCCCC-ccceeeecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcc
Confidence 99999976 689999999999999999999876 348999999999999998 568999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEE
Q psy16627 232 SLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVD 311 (713)
Q Consensus 232 ~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvD 311 (713)
++.++.|+|+||++|..+++.+||||++|.+..||.|.|+|..|+| ++..++++...|||++|.+|.+.||+||
T Consensus 383 ~~~pk~~~G~aLk~a~~l~g~~GGkii~~~stlPn~G~Gkl~~r~d------~e~~ll~c~d~fYk~~a~e~~k~gIsvd 456 (861)
T COG5028 383 NKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQLRED------KESSLLSCKDSFYKEFAIECSKVGISVD 456 (861)
T ss_pred cCCCccccCHHHHHHHHHhhccCceEEEEeecCCCccccccccccc------chhhhccccchHHHHHHHHHHHhcceEE
Confidence 9999999999999999999999999999999999999999998876 3335888999999999999999999999
Q ss_pred EEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCcccc
Q psy16627 312 LFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVR 391 (713)
Q Consensus 312 lf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~~ 391 (713)
+|.++.+++|+++++.|++.|||.+++|++|+.+.+.|..+|.+||.+++.++.||+++||||||+|+++.++|||++.+
T Consensus 457 ~Flt~~~yidvaTls~l~~~T~G~~~~Yp~f~~~~~~d~~kl~~dL~~~ls~~~gy~~~~rvR~S~glr~s~fyGnf~~r 536 (861)
T COG5028 457 LFLTSEDYIDVATLSHLCRYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNR 536 (861)
T ss_pred EEeccccccchhhhcchhhccCcceEEcCCcccCCchhHHHHHHHHHHhhhhhhhhheeeEeeccCceehhhhhcccccc
Confidence 99999999999999999999999999999999767779999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHHH
Q psy16627 392 STDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAK 471 (713)
Q Consensus 392 ~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~llar 471 (713)
+.++..++.++.|+|+.|+|++++++.. ..+|||.|++||..+|+|||||.|+++++++++.++|+++||+|++.+|+|
T Consensus 537 s~dl~~F~tm~rd~Sl~~~~sid~~l~~-~~v~fQvAlL~T~~~GeRRiRVvn~s~~~ss~~~evyasadq~aIa~~lak 615 (861)
T COG5028 537 SSDLCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQVALLYTLNDGERRIRVVNLSLPTSSSIREVYASADQLAIACILAK 615 (861)
T ss_pred CcccccccccCCCceEEEEEEecccccC-CceEEEEEEEeeccCCceEEEEEEeccccchhHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999975 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHH
Q psy16627 472 MAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMT 550 (713)
Q Consensus 472 ~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~ 550 (713)
+|+.++..+++.++|+.+++.++++|+.||+.++++..+ ++.||++|++||++|++|.||.+||.+ .++.|.|+++..
T Consensus 616 ~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~~~snt~tql~Lp~nL~lLPll~lal~Ks~~~rs~-~~~sD~r~~~L~ 694 (861)
T COG5028 616 KASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQLPLPANLKLLPLLMLALLKSSAFRSG-STPSDIRISALN 694 (861)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHhhhcccccC-CCccchhHHHHH
Confidence 999999999999999999999999999999987776554 599999999999999999999999976 788999999999
Q ss_pred HHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhc
Q psy16627 551 EMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGL 630 (713)
Q Consensus 551 ~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~l 630 (713)
.+.++++.++++.|||+||++|++.++.+..+++ ....|..+.++.+.++.+|+||+|+|.++|+|+|+++.+.+++++
T Consensus 695 ~l~~~p~~~l~~~iYP~lyalHdm~~e~~l~~~~-~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dl 773 (861)
T COG5028 695 RLTSLPLKQLMRNIYPTLYALHDMPIEAGLPDEG-LLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDL 773 (861)
T ss_pred HhhcCCHHHHHHhhccceeeecccccccCCCccc-ccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHh
Confidence 9999999999999999999999999998776543 356777899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccCCCCCchHHhHHHHHHHHHHhh-cCCCcCcEEEEeCCCC-c-HHHHHHhhcccCCCCCCCHHHHHH
Q psy16627 631 FGFQSVAQMPETLFELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSP-D-RMEFYDKLIEDKNAGGMAYYEFLL 707 (713)
Q Consensus 631 fg~~~~~~~~~~~~~lp~~d~~~s~~l~~~i~~l~~-~r~~~~p~~iv~~~~~-~-~~~f~~~LvED~~~~~~SY~dfL~ 707 (713)
||+++..+++..-..+|..+++.|+++|++|+.||. .+....|+++||++++ + +.+|++.||||++.+..||-|||+
T Consensus 774 f~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl~lvlVR~~~d~s~~~~~~s~lVEDk~~n~~SY~~yL~ 853 (861)
T COG5028 774 FGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFSTLVEDKTLNIPSYLDYLQ 853 (861)
T ss_pred cCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCccceEEEecCCCcchhhheehheecccccCCccHHHHHH
Confidence 999999999988888898988999999999999998 6666788999999864 4 789999999999999999999999
Q ss_pred HHHHhC
Q psy16627 708 RIREQV 713 (713)
Q Consensus 708 ~lh~~i 713 (713)
.+|++|
T Consensus 854 ~lh~ki 859 (861)
T COG5028 854 ILHEKI 859 (861)
T ss_pred HHHHHh
Confidence 999986
No 7
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-110 Score=885.05 Aligned_cols=621 Identities=19% Similarity=0.270 Sum_probs=544.8
Q ss_pred ccccccccccc-------cCCCCCCCCCCCCCCCCCC--CCC------------CCCCCCcccccCCCCCCCCC---CCC
Q psy16627 46 MNKMWGYEPHD-------LLNTRDILPATKVEPPPIR--LPQ------------NLPEIHEQFLYDRNTEMFGD---PYR 101 (713)
Q Consensus 46 ~~~~~~~~~~~-------~l~~~~~~p~~~~~p~~~~--~~~------------~~n~~p~~~~~~~~~~~y~d---~~~ 101 (713)
++|.|++|+++ ||+|++.+++..|+|+.+. |+. +.|.||+|.++|++|.+|.| .+.
T Consensus 21 at~~da~~~~iPia~lY~Pl~e~~~~~v~~yepv~C~~pC~avlnpyC~id~r~~~W~CpfCnqrn~lp~qy~~iS~~~L 100 (755)
T COG5047 21 ATRGDATRTVIPIACLYTPLHEDDALTVNYYEPVKCTAPCKAVLNPYCHIDERNQSWICPFCNQRNTLPPQYRDISNANL 100 (755)
T ss_pred CCccccccccccHHHhccccccccccCcccCCCceecccchhhcCcceeeccCCceEecceecCCCCCChhhcCCCcccC
Confidence 57889998888 8999999999999999211 332 69999999999999999975 588
Q ss_pred CCcc--ccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEE
Q psy16627 102 RPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY 179 (713)
Q Consensus 102 rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y 179 (713)
|+|| +++||||++++ .+..||+|+||||+|.+..+ |.+++++|+.+|+.+|+++ +||||||++.||+|
T Consensus 101 plellpqssTiey~lsk-----p~~~ppvf~fvvD~~~D~e~---l~~Lkdslivslsllppea--LvglItygt~i~v~ 170 (755)
T COG5047 101 PLELLPQSSTIEYTLSK-----PVILPPVFFFVVDACCDEEE---LTALKDSLIVSLSLLPPEA--LVGLITYGTSIQVH 170 (755)
T ss_pred CccccCCCceEEEEccC-----CccCCceEEEEEEeecCHHH---HHHHHHHHHHHHhcCCccc--eeeEEEecceeEEE
Confidence 9999 89999999985 25569999999999998777 9999999999999999999 99999999999999
Q ss_pred EcCCCCCCCeeeeecC--------cCcc------C--------CC-----CCCCcceehhhhHHHHHHHHhhCc-ccc--
Q psy16627 180 SLAEGQTQPSQMILTD--------IDDI------F--------LP-----SPENILVNLSECYDMIVDLLKQLP-GKF-- 229 (713)
Q Consensus 180 ~l~~~~~~~q~~vv~d--------l~d~------f--------~P-----~~~~~l~~l~e~~~~i~~lL~~L~-~~~-- 229 (713)
+++... ..+..|.+. +++. . ++ .+.+|+.++++|++.+.++|++|+ +.|
T Consensus 171 el~ae~-~~r~~VF~g~~eyt~~~L~~ll~~~~~~~~~~~es~is~~~~~~~~rFl~p~q~ce~~L~n~le~L~pd~~~v 249 (755)
T COG5047 171 ELNAEN-HRRSYVFSGNKEYTKENLQELLALSKPTKSGGFESKISGIGQFASSRFLLPTQQCEFKLLNILEQLQPDPWPV 249 (755)
T ss_pred eccccc-cCcceeecchHHHHHHHHHHHhcccCCCCcchhhhhcccccccchhhhhccHHHHHHHHHHHHHHhCCCCccC
Confidence 998643 334444221 1110 0 11 235699999999999999999998 667
Q ss_pred cCCCCCCCchHHHHHHHHHhhcC----CCCEEEEEecCCCCCCCCcccCCC--CCCCCCC----CCCCCCcchHHHHHHH
Q psy16627 230 KDSLDSGSALGPALQAAFKLLQP----TGGRITIFQTCLPNRGPGALQSRE--NPNQRSN----DDPPHMNPATDFYKKI 299 (713)
Q Consensus 230 ~~~~~~~~~~G~AL~~A~~ll~~----~GGrI~~F~~g~pt~GpG~l~~~~--~~~~~s~----~~~~~~~~a~~fY~~L 299 (713)
..++|+.||||+||.+|..||+. .|+||++|++||||.|||.|++++ ++.|..| +.++|.+++.|||++|
T Consensus 250 ~~~~Rp~RCTGsAl~ias~Ll~~~~p~~~~~i~lF~~GPcTvGpG~Vvs~elkEpmRshH~ie~d~aqh~kka~KFY~~l 329 (755)
T COG5047 250 PAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQHSKKATKFYKGL 329 (755)
T ss_pred CCCCCCccccchhHHHHHHHHHhhccCcceeEEEEcCCCccccCceeeehhhcccccccccccccchhhccchHHHHHHH
Confidence 67899999999999999999984 899999999999999999999987 6776433 2268999999999999
Q ss_pred HHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhh--ccccccceEEEEEecC
Q psy16627 300 ALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL--TRKIGFESVMRIRCTK 377 (713)
Q Consensus 300 a~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l--~~~~g~~a~l~Vr~S~ 377 (713)
|++.+.+||++|+|+.+.||+|+.||+.|...|||.+.+.++|++ ++++++|++-|.+.- ..++||||.|+|.|||
T Consensus 330 aeR~a~~gh~~DifagcldqIGI~eM~~L~~sTgg~lvlsdsF~t--~ifkqSfqrif~~d~~g~l~~gfNa~m~V~TsK 407 (755)
T COG5047 330 AERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGGALVLSDSFTT--SIFKQSFQRIFNRDSEGYLKMGFNANMEVKTSK 407 (755)
T ss_pred HHHHhccchhHHHHHHHHHhhhhhcchhhccCCcceEEEeccccH--HHHHHHHHHHhCcCcccchhhhhccceeEeecc
Confidence 999999999999999999999999999999999999999999997 577788777776643 3579999999999999
Q ss_pred CceEEEEecCccc---------------cCCCceeecCCCCCCeEEEEEEeecccCC-----CceeEEEEEEEeeecCCC
Q psy16627 378 GMSIHTFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDENLTH-----IQYACFQVAVLYTSSKGD 437 (713)
Q Consensus 378 gl~v~~~~G~~~~---------------~~t~~~~l~~i~~~~s~~~~f~~~~~l~~-----~~~~~iQ~a~lYt~~~G~ 437 (713)
+++|+|++|+... +.|+.|++++++|.+++++.||+...-.. ...+||||.+.|+|++|.
T Consensus 408 nl~~~g~ig~a~~~~k~~~ni~~~eigi~~t~swkm~slsPk~nyal~fei~~~~~~~~~~~~~~a~iQfiT~yQhss~t 487 (755)
T COG5047 408 NLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRPAEAYIQFITTYQHSSGT 487 (755)
T ss_pred CceeeeeecceeeecccccccccccccccccccccccccCCCcceEEEEEeccccCCCccCCcccchhhhhhhhhccCCc
Confidence 9999999999763 35788999999999999999999865322 257999999999999999
Q ss_pred EEEEEEeccccccc-CHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCc
Q psy16627 438 RRIRVHTLCLPVVS-NINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPS 516 (713)
Q Consensus 438 rriRV~T~~l~vt~-~~~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~ 516 (713)
.||||+|++...++ ....+.++|||||+++++||+|++|++.++..|+-+|+|+.+|++|++|.+ +.|++|++|+|++
T Consensus 488 ~riRVtTvar~f~~~~~p~i~~SFdqEaaaV~~aR~a~~K~~~ed~~Dv~rw~dr~lirlcq~fa~-y~k~dpssfrl~~ 566 (755)
T COG5047 488 YRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQKFAD-YRKDDPSSFRLDP 566 (755)
T ss_pred EEEEEeehhhhhccCCChhhhhcchhhHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHh-cCCCCchhhcCCc
Confidence 99999999998876 567799999999999999999999999999999999999999999999999 7999999999999
Q ss_pred ccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCcccccc
Q psy16627 517 SLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLS 596 (713)
Q Consensus 517 ~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls 596 (713)
+|.++|+|||+|||||+|+++ |+|||||+||+|++.+.++++++.||+|+|.+||. +++ ..|+. ||
T Consensus 567 ~f~lypqf~y~lrRSpfL~vf-NnSPDEt~fyrh~l~~~dv~~sLimiqPtL~Sys~---------~~~--~~pVl--LD 632 (755)
T COG5047 567 NFTLYPQFMYHLRRSPFLSVF-NNSPDETAFYRHMLNNADVNDSLIMIQPTLQSYSF---------EKG--GVPVL--LD 632 (755)
T ss_pred chhhhhHHHhhhhccceeecc-CCCcchHHHHHHHHhcccccchhhhhcchheeeec---------cCC--CceEE--Ee
Confidence 999999999999999999998 99999999999999999999999999999999993 332 25555 89
Q ss_pred ccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcc-----ccCCCCCchHHhHHHHHHHHHHhhcCCCc
Q psy16627 597 AERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQLSLKLNSFISYLNDDKAYV 671 (713)
Q Consensus 597 ~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~~s~~l~~~i~~l~~~r~~~ 671 (713)
+-+++||.|+|||++++|+||+|+.+++|+ ..+|++.|+| +++.|++++.+ .|.+| ||
T Consensus 633 s~svkpdviLLlDtff~Ili~hG~~iaqwr------~agyq~qpey~~lK~Ll~~p~~ea~e---------ll~dR--fP 695 (755)
T COG5047 633 SVSVKPDVILLLDTFFHILIFHGSYIAQWR------NAGYQEQPEYLNLKELLEAPRLEAAE---------LLQDR--FP 695 (755)
T ss_pred ccccCCCeEEEeeceeEEEEECChHHHHHH------hhhhhcCchhhhHHHHhhchhhHHHH---------HHHhh--CC
Confidence 999999999999999999999999999999 7788888887 56778887776 78888 99
Q ss_pred CcEEEEeCCCCcHHHHH-Hhhcc----cCCC---------CCCCHHHHHHHHHH
Q psy16627 672 SPVKVIKDSSPDRMEFY-DKLIE----DKNA---------GGMAYYEFLLRIRE 711 (713)
Q Consensus 672 ~p~~iv~~~~~~~~~f~-~~LvE----D~~~---------~~~SY~dfL~~lh~ 711 (713)
.|++|+++++++|+||+ +++.- +++. +.++|.+|+.||.+
T Consensus 696 ~Prfi~teqggSQaRfLlskinPsd~~~~~~~~~s~tilTddv~lq~fm~hl~~ 749 (755)
T COG5047 696 IPRFIVTEQGGSQARFLLSKINPSDITNKMSGGGSETILTDDVNLQKFMNHLRK 749 (755)
T ss_pred CCeEEEecCCccHHHHHHhhcCccccccccccCccceeeecccCHHHHHHHHHH
Confidence 99999999999999999 45522 3211 36899999999987
No 8
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=100.00 E-value=5.5e-55 Score=449.97 Aligned_cols=241 Identities=49% Similarity=0.832 Sum_probs=226.4
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
|+||+|+||||+|..++++|+++++|++|+++|+.||++ .|++|||||||+.||||+++.+.+++|+++++|++|+|+|
T Consensus 1 p~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P 80 (244)
T cd01479 1 PQPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLP 80 (244)
T ss_pred CCCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCC
Confidence 579999999999999999999999999999999999998 7889999999999999999988889999999999999999
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRS 282 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s 282 (713)
.|++||++++||++.|+++|++|+++|.+++++.+|+|+||++|..+|++.||||++|++|+||.|||+|+.|++...++
T Consensus 81 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GGkIi~f~s~~pt~GpG~l~~~~~~~~~~ 160 (244)
T cd01479 81 LPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGGKIIVFQSSLPTLGAGKLKSREDPKLLS 160 (244)
T ss_pred CCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCCEEEEEeCCCCCcCCcccccCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997655444
Q ss_pred C-CCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhh
Q psy16627 283 N-DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL 361 (713)
Q Consensus 283 ~-~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l 361 (713)
+ ++.++++++.+||++||.+|+++||+||+|+++.+++|+++|+.||+.|||.+++|++|+-+...+.++|.+||.|.+
T Consensus 161 ~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~~~~~~~~d~~kl~~dl~~~l 240 (244)
T cd01479 161 TDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYPSFNFSAPNDVEKLVNELARYL 240 (244)
T ss_pred chhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEECCccCCchhhHHHHHHHHHHHh
Confidence 4 566899999999999999999999999999999999999999999999999999999555333678899999999999
Q ss_pred ccc
Q psy16627 362 TRK 364 (713)
Q Consensus 362 ~~~ 364 (713)
+|+
T Consensus 241 tr~ 243 (244)
T cd01479 241 TRK 243 (244)
T ss_pred ccc
Confidence 876
No 9
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=100.00 E-value=7.2e-51 Score=419.39 Aligned_cols=234 Identities=44% Similarity=0.741 Sum_probs=218.8
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
|+||+|+||||+|++++++|+++++|++|+++|+.||.+.+++|||||||+.||||+++....+++++|++|++|+|+|.
T Consensus 1 p~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~ 80 (239)
T cd01468 1 PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPL 80 (239)
T ss_pred CCCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCC
Confidence 68999999999999999999999999999999999996666799999999999999999877679999999999999999
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccC--CCCCCCchHHHHHHHHHhhcCC--CCEEEEEecCCCCCCCCcccCCCCCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKD--SLDSGSALGPALQAAFKLLQPT--GGRITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~--~~~~~~~~G~AL~~A~~ll~~~--GGrI~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
+.++|++++|+++.|.++|++|+..+.. ++++.||+|+||++|..+|+.. ||||++|++|+||.|||+|+.|++..
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCceEEEEECCCCCCCCCccccCcccc
Confidence 9999999999999999999999988876 8899999999999999999988 99999999999999999999997654
Q ss_pred C-CCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy16627 280 Q-RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 358 (713)
Q Consensus 280 ~-~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 358 (713)
. ++|+++++++++.+||++||.+|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+. ..+.++|.++|+
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f~~--~~~~~~~~~~l~ 238 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSFQA--PNDGSKFKQDLQ 238 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCCCC--cccHHHHHHHhc
Confidence 4 4677889999999999999999999999999999999999999999999999999999999985 356789988886
Q ss_pred H
Q psy16627 359 R 359 (713)
Q Consensus 359 ~ 359 (713)
|
T Consensus 239 r 239 (239)
T cd01468 239 R 239 (239)
T ss_pred C
Confidence 4
No 10
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=100.00 E-value=1.4e-49 Score=411.14 Aligned_cols=236 Identities=42% Similarity=0.757 Sum_probs=200.5
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
|+||+|+||||+|.+|+++|+++++|++|+++|+.||.+.+++|||||||+.||||+++.+..++++++++|++|+|+|.
T Consensus 1 P~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~ 80 (243)
T PF04811_consen 1 PQPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPL 80 (243)
T ss_dssp -S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSST
T ss_pred CCCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCC
Confidence 68999999999999999999999999999999999997677799999999999999999988889999999999999999
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCC--CCCCCchHHHHHHHHHhhc--CCCCEEEEEecCCCCCCC-CcccCCCCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDS--LDSGSALGPALQAAFKLLQ--PTGGRITIFQTCLPNRGP-GALQSRENP 278 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~--~~~~~~~G~AL~~A~~ll~--~~GGrI~~F~~g~pt~Gp-G~l~~~~~~ 278 (713)
+++||+++.||++.|+++|++|+..|+.. +++.||+|+||++|..+|+ ..||||++|++|+||.|| |++..+++.
T Consensus 81 ~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 81 PDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-EEEEEEESS---SSSTTSS-SBTTS
T ss_pred cccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCCEEEEEeccCCCCCCCceecccccc
Confidence 99999999999999999999999988766 8899999999999999999 899999999999999999 677776655
Q ss_pred CCCC-CCC-CCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHH
Q psy16627 279 NQRS-NDD-PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM 356 (713)
Q Consensus 279 ~~~s-~~~-~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~d 356 (713)
.... .++ ..+++++.+||++||.+|+++||+||+|+++.+++|+++|+.+|+.|||.+++|++|+. ..+.++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~~--~~~~~~l~~d 238 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFNA--ERDGEKLRQD 238 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTTC--HHHHHHHHHH
T ss_pred cccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCCC--chhHHHHHHH
Confidence 4432 344 46788899999999999999999999999999999999999999999999999999995 5778999999
Q ss_pred HHHhh
Q psy16627 357 FSRYL 361 (713)
Q Consensus 357 l~~~l 361 (713)
|.|++
T Consensus 239 l~r~~ 243 (243)
T PF04811_consen 239 LKRLV 243 (243)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99864
No 11
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=100.00 E-value=1e-48 Score=406.67 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=189.7
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCC---------------CCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ---------------TQP 188 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~---------------~~~ 188 (713)
|+||+|+||||+|.++++ +++++++|+++|+.||+++ +|||||||++||||||+... +++
T Consensus 1 p~pp~~vFviDvs~~~~e---l~~l~~sl~~~L~~lP~~a--~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~ 75 (267)
T cd01478 1 TSPPVFLFVVDTCMDEEE---LDALKESLIMSLSLLPPNA--LVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQI 75 (267)
T ss_pred CCCCEEEEEEECccCHHH---HHHHHHHHHHHHHhCCCCC--EEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHH
Confidence 579999999999999998 8999999999999999987 99999999999999998541 112
Q ss_pred eee-------------eecCcCccCCCCC-CCcceehhhhHHHHHHHHhhCc-ccc--cCCCCCCCchHHHHHHHHHhhc
Q psy16627 189 SQM-------------ILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLP-GKF--KDSLDSGSALGPALQAAFKLLQ 251 (713)
Q Consensus 189 q~~-------------vv~dl~d~f~P~~-~~~l~~l~e~~~~i~~lL~~L~-~~~--~~~~~~~~~~G~AL~~A~~ll~ 251 (713)
+++ +.+|++++|.|.+ ++||+|++||++.|+++|++|+ ..| +.++++.||+|+||++|..+|+
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~ 155 (267)
T cd01478 76 QDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLE 155 (267)
T ss_pred HHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHH
Confidence 111 1234678888865 6999999999999999999998 445 5678999999999999999998
Q ss_pred ----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCCC----C-CCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccC
Q psy16627 252 ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSND----D-PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321 (713)
Q Consensus 252 ----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~-~s~~----~-~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~ 321 (713)
+.||||++|++|+||.|||+|+.|+..+. ++|. + .++++++.+||++||.+|+++||+||+|+++.+|+|
T Consensus 156 ~~~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~vg 235 (267)
T cd01478 156 ACFPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVG 235 (267)
T ss_pred hhcCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccccC
Confidence 58999999999999999999999874332 2442 2 368999999999999999999999999999999999
Q ss_pred chhhcccccCCCceEEEeCCCCC
Q psy16627 322 LATLSGVSKFSSGCIHHIPLYSG 344 (713)
Q Consensus 322 l~~l~~l~~~TGG~v~~y~~f~~ 344 (713)
++||+.|++.|||.+++||+|+.
T Consensus 236 laem~~l~~~TGG~v~~~~~f~~ 258 (267)
T cd01478 236 LLEMKVLVNSTGGHVVLSDSFTT 258 (267)
T ss_pred HHHHHHHHHhcCcEEEEeCCcch
Confidence 99999999999999999999996
No 12
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=99.85 E-value=2.4e-21 Score=171.05 Aligned_cols=85 Identities=46% Similarity=0.825 Sum_probs=76.7
Q ss_pred ccceEEEEEecCCceEEEEecCccccC---------CCc--eeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeec
Q psy16627 366 GFESVMRIRCTKGMSIHTFHGNFFVRS---------TDL--LALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSS 434 (713)
Q Consensus 366 g~~a~l~Vr~S~gl~v~~~~G~~~~~~---------t~~--~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~ 434 (713)
||+|+||||||+|++|++++||++..+ .+. |++++++++++++|+|++++++.+.+.+||||+++||+.
T Consensus 1 g~~~~l~vr~S~gl~v~~~~G~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~ 80 (96)
T PF08033_consen 1 GFNAVLRVRCSKGLKVSGVIGPCFNRSSVSDNEIGEGDTTRWKLPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDS 80 (96)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSEESSTBESSECSBSSCSEEEEEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEET
T ss_pred CceEEEEEEECCCeEEEEEEcCccccccccceeeccCCccEEEecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECC
Confidence 799999999999999999999998765 444 999999999999999999998877789999999999999
Q ss_pred CCCEEEEEEecccccc
Q psy16627 435 KGDRRIRVHTLCLPVV 450 (713)
Q Consensus 435 ~G~rriRV~T~~l~vt 450 (713)
+|+|||||+|+++|||
T Consensus 81 ~G~r~iRV~T~~l~vt 96 (96)
T PF08033_consen 81 NGERRIRVTTLSLPVT 96 (96)
T ss_dssp TSEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEeeccccC
Confidence 9999999999999986
No 13
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=99.83 E-value=1.7e-20 Score=167.72 Aligned_cols=102 Identities=44% Similarity=0.691 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccchHHHHHHHHhcCccccCCCCC
Q psy16627 462 QACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQST 540 (713)
Q Consensus 462 ~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~ 540 (713)
|||++++++|++++++.++++.|+|+++++++++++++||++|+...++ +|+||++||+||+|+++|+||++|+. .++
T Consensus 1 Qda~~~llak~ai~~~~~~~l~~~r~~l~~~~v~il~~Yr~~~~~~~~~~qLilPe~lklLPly~l~llKs~alr~-~~v 79 (103)
T PF04815_consen 1 QDAITSLLAKQAIDKALSSSLKDARESLDNRLVDILAAYRKNCASSSSSGQLILPESLKLLPLYILALLKSPALRP-TNV 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHCTTECCCTEEEEEGGGTTHHHHHHHHHTSTTTSC-STS
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhCCHHHHHHHHHHHHHHcchhhcC-CCC
Confidence 7999999999999999999999999999999999999999998776554 69999999999999999999999999 699
Q ss_pred ChhHHHHHHHHHcCCChHhhHhhh
Q psy16627 541 RLDDRLFAMTEMKCLPLNSLMLSI 564 (713)
Q Consensus 541 s~Der~~~~~~l~~~~v~~~~~~i 564 (713)
++|||+|.+++++++++..++.||
T Consensus 80 ~~D~R~~~~~~~~~~~~~~~~~~i 103 (103)
T PF04815_consen 80 SPDERAYAMHLLLSMPVDSLLRMI 103 (103)
T ss_dssp -HHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CCcHHHHHHHHHHCCCHHHHHhhC
Confidence 999999999999999999999886
No 14
>PRK13685 hypothetical protein; Provisional
Probab=98.69 E-value=6.8e-07 Score=96.71 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=116.2
Q ss_pred CCcEEEEEEEcchhHHhh----chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccC
Q psy16627 125 QPAMYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 200 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~s----g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f 200 (713)
.+...+||||+|.+...+ ..++.++++++..++.++++. +||+|+|++..++.
T Consensus 87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d--~vglv~Fa~~a~~~--------------------- 143 (326)
T PRK13685 87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGI--NLGLIAFAGTATVL--------------------- 143 (326)
T ss_pred CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--eEEEEEEcCceeec---------------------
Confidence 345689999999875432 468999999999999997666 89999999875521
Q ss_pred CCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCC
Q psy16627 201 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGP 269 (713)
Q Consensus 201 ~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----------~GGrI~~F~~g~pt~Gp 269 (713)
.|. ...++.+...|+.|.. ...++.|.|+..|...++. ..++|+++++|-.|.|.
T Consensus 144 ~p~--------t~d~~~l~~~l~~l~~------~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~ 209 (326)
T PRK13685 144 VSP--------TTNREATKNAIDKLQL------ADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPT 209 (326)
T ss_pred CCC--------CCCHHHHHHHHHhCCC------CCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCC
Confidence 121 1245667777887752 3567889999999887752 13689999999877653
Q ss_pred CcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc-------------cCchhhcccccCCCceE
Q psy16627 270 GALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY-------------VDLATLSGVSKFSSGCI 336 (713)
Q Consensus 270 G~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~-------------~~l~~l~~l~~~TGG~v 336 (713)
..... . .. .+.+..+.+.||.|..+.+..+. .|-..|..+++.|||..
T Consensus 210 ~~~~~----~-----------~~----~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~ 270 (326)
T PRK13685 210 NPDNP----R-----------GA----YTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEF 270 (326)
T ss_pred CCCCc----c-----------cH----HHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEE
Confidence 21100 0 00 24567778899999999987642 57789999999999988
Q ss_pred EEeCC
Q psy16627 337 HHIPL 341 (713)
Q Consensus 337 ~~y~~ 341 (713)
++.++
T Consensus 271 ~~~~~ 275 (326)
T PRK13685 271 YTAAS 275 (326)
T ss_pred EEcCC
Confidence 87644
No 15
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.57 E-value=1.9e-06 Score=85.44 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=106.6
Q ss_pred EEEEEEcchhHHhh----chHHHHHHHHHHHhhcCCC-CCCceEEEEEE-cCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 129 YLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPG-DRRTSIAIITY-DSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 129 ~vFvID~s~~a~~s----g~l~~~~~sl~~~L~~lp~-~~~~~VglITF-~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
.+++||+|.+..++ ..|+.+++.+...++.+.. ++.-+||||+| +..-++- .|
T Consensus 6 ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~---------------------~P 64 (183)
T cd01453 6 LIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKL---------------------TD 64 (183)
T ss_pred EEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEE---------------------EC
Confidence 68999999875532 3688999999887765411 22228999999 4443321 22
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---C-CCEEEEEecCCCCCCCCcccCCCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-GGRITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-GGrI~~F~~g~pt~GpG~l~~~~~~ 278 (713)
+.. ..+.+...|+.+ + .....+.++.||..|...|+. . +++|++++++.-+.+|+.
T Consensus 65 lT~--------D~~~~~~~L~~~--~---~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~------- 124 (183)
T cd01453 65 LTG--------NPRKHIQALKTA--R---ECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGN------- 124 (183)
T ss_pred CCC--------CHHHHHHHhhcc--c---CCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhh-------
Confidence 211 112334444444 1 123458999999999999964 2 357888887643322211
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 358 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 358 (713)
+.++++.+.++||.|++..++. +...|+.+|+.|||..+.-.+ .+.|...+.
T Consensus 125 -----------------~~~~~~~l~~~~I~v~~IgiG~---~~~~L~~ia~~tgG~~~~~~~--------~~~l~~~~~ 176 (183)
T cd01453 125 -----------------IYETIDKLKKENIRVSVIGLSA---EMHICKEICKATNGTYKVILD--------ETHLKELLL 176 (183)
T ss_pred -----------------HHHHHHHHHHcCcEEEEEEech---HHHHHHHHHHHhCCeeEeeCC--------HHHHHHHHH
Confidence 2467888999999999999864 457899999999999987533 255655555
Q ss_pred Hh
Q psy16627 359 RY 360 (713)
Q Consensus 359 ~~ 360 (713)
+.
T Consensus 177 ~~ 178 (183)
T cd01453 177 EH 178 (183)
T ss_pred hc
Confidence 43
No 16
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.50 E-value=2.6e-06 Score=85.96 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=112.4
Q ss_pred CCCCcEEEEEEEcchhHHh-----hchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeee-cCc
Q psy16627 123 PPQPAMYLFLLDVSQIAAQ-----SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMIL-TDI 196 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~-----sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv-~dl 196 (713)
+..|..++||||+|.+... ...++.+++++...++.++++. +||+++|++.++- ... .+..+. ..+
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~--~v~lv~F~~~~~~---~~~---~~~~~p~~~~ 88 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGT--RLGLWTFSGDGDN---PLD---VRVLVPKGCL 88 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCc--eEEEEEecCCCCC---Ccc---cccccccccc
Confidence 5568899999999987541 2368899999999999998776 9999999995431 000 010100 000
Q ss_pred CccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC-CEEEEEecCCCCCCCCcccCC
Q psy16627 197 DDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-GRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 197 ~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-GrI~~F~~g~pt~GpG~l~~~ 275 (713)
.....+.+ ...++.+.+.|+.+. .....+.++.||..|..++.... ..|+++++|.++.|....
T Consensus 89 ~~~~~~~~-------~~~~~~l~~~i~~i~-----~~~G~T~l~~aL~~a~~~l~~~~~~~iillTDG~~~~~~~~~--- 153 (206)
T cd01456 89 TAPVNGFP-------SAQRSALDAALNSLQ-----TPTGWTPLAAALAEAAAYVDPGRVNVVVLITDGEDTCGPDPC--- 153 (206)
T ss_pred ccccCCCC-------cccHHHHHHHHHhhc-----CCCCcChHHHHHHHHHHHhCCCCcceEEEEcCCCccCCCCHH---
Confidence 00000100 023556667777774 13456899999999999996322 679999999877654110
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHH-hhCCeEEEEEEecCCccCchhhcccccCCCceE
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALEC-TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCI 336 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~-~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v 336 (713)
+..++++... ...++.|+++.+..+ .|...|..+++.|||..
T Consensus 154 ------------------~~~~~~~~~~~~~~~i~i~~igiG~~-~~~~~l~~iA~~tgG~~ 196 (206)
T cd01456 154 ------------------EVARELAKRRTPAPPIKVNVIDFGGD-ADRAELEAIAEATGGTY 196 (206)
T ss_pred ------------------HHHHHHHHhcCCCCCceEEEEEecCc-ccHHHHHHHHHhcCCeE
Confidence 1112222211 225899999998765 67889999999999988
No 17
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.50 E-value=3.6e-06 Score=82.67 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=105.0
Q ss_pred cEEEEEEEcchhHHhh-----chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 127 AMYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 127 p~~vFvID~s~~a~~s-----g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
.-++|+||+|.+.... ..++.+++.+...+...|+ . +||+|+|++.+++. .
T Consensus 3 ~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~~~-~--~v~lv~f~~~~~~~---------------------~ 58 (180)
T cd01467 3 RDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRREN-D--RIGLVVFAGAAFTQ---------------------A 58 (180)
T ss_pred ceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhCCC-C--eEEEEEEcCCeeec---------------------c
Confidence 3478999999864321 1367777877777776653 3 89999998876431 1
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~ 278 (713)
|. ...+..+..+|+.|... .....+.++.||..|...+.. ....|++++.|.++.|+-.
T Consensus 59 ~~--------~~~~~~~~~~l~~l~~~---~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~------- 120 (180)
T cd01467 59 PL--------TLDRESLKELLEDIKIG---LAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEID------- 120 (180)
T ss_pred CC--------CccHHHHHHHHHHhhhc---ccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCC-------
Confidence 11 11233455566666521 124557899999999998864 2356889999987754310
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCC----------ccCchhhcccccCCCceEEEeCC
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ----------YVDLATLSGVSKFSSGCIHHIPL 341 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~----------~~~l~~l~~l~~~TGG~v~~y~~ 341 (713)
..+.+..+.+.||.|+.+.+... ..|...|..+++.|||..++..+
T Consensus 121 -----------------~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~ 176 (180)
T cd01467 121 -----------------PATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALD 176 (180)
T ss_pred -----------------HHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEecC
Confidence 02334455678999999988762 36778899999999999998753
No 18
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.49 E-value=6.1e-06 Score=80.05 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=111.6
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 208 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l 208 (713)
++||+|+|.+.... -++.+++++...+..++++. +||+|+|++..+.. + + +.+.
T Consensus 3 ~~~vlD~S~SM~~~-~~~~~k~a~~~~~~~l~~~~--~v~li~f~~~~~~~------------~--~------~~~~--- 56 (170)
T cd01465 3 LVFVIDRSGSMDGP-KLPLVKSALKLLVDQLRPDD--RLAIVTYDGAAETV------------L--P------ATPV--- 56 (170)
T ss_pred EEEEEECCCCCCCh-hHHHHHHHHHHHHHhCCCCC--EEEEEEecCCccEE------------e--c------Cccc---
Confidence 78999999865433 37888999999999998766 99999999865431 0 0 0000
Q ss_pred eehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC---C--CEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy16627 209 VNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---G--GRITIFQTCLPNRGPGALQSRENPNQRSN 283 (713)
Q Consensus 209 ~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---G--GrI~~F~~g~pt~GpG~l~~~~~~~~~s~ 283 (713)
..+..+.+.++++. ....+.++.||..|...++.. + .+|++|++|.++.|+...
T Consensus 57 ----~~~~~l~~~l~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~----------- 115 (170)
T cd01465 57 ----RDKAAILAAIDRLT------AGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDP----------- 115 (170)
T ss_pred ----chHHHHHHHHHcCC------CCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCH-----------
Confidence 12234445555553 244578999999999988641 2 579999999988765211
Q ss_pred CCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCC
Q psy16627 284 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 342 (713)
Q Consensus 284 ~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f 342 (713)
+-+.+.+..+.+.++.|+.+.+. +..+...|+.+++.++|..++.++.
T Consensus 116 ----------~~~~~~~~~~~~~~v~i~~i~~g-~~~~~~~l~~ia~~~~g~~~~~~~~ 163 (170)
T cd01465 116 ----------DELARLVAQKRESGITLSTLGFG-DNYNEDLMEAIADAGNGNTAYIDNL 163 (170)
T ss_pred ----------HHHHHHHHHhhcCCeEEEEEEeC-CCcCHHHHHHHHhcCCceEEEeCCH
Confidence 12345556667789999999997 6688899999999999998877554
No 19
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.46 E-value=2.9e-06 Score=81.68 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=104.0
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 208 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l 208 (713)
.+|+||+|.+.. ..-++.+++++...++.|+++. +||+|+|++..+.+ . ++.+..
T Consensus 3 v~~vlD~S~SM~-~~rl~~ak~a~~~l~~~l~~~~--~~~li~F~~~~~~~--~----------------~~~~~~---- 57 (155)
T cd01466 3 LVAVLDVSGSMA-GDKLQLVKHALRFVISSLGDAD--RLSIVTFSTSAKRL--S----------------PLRRMT---- 57 (155)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHHHHhCCCcc--eEEEEEecCCcccc--C----------------CCcccC----
Confidence 579999997643 2357889999999999999876 89999999875531 0 001100
Q ss_pred eehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy16627 209 VNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQSRENPNQRSN 283 (713)
Q Consensus 209 ~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~ 283 (713)
...+..+.++++.+. ....++++.||..|..+++.. ...|+++++|.++.|...
T Consensus 58 ---~~~~~~~~~~i~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~~------------ 116 (155)
T cd01466 58 ---AKGKRSAKRVVDGLQ------AGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVV------------ 116 (155)
T ss_pred ---HHHHHHHHHHHHhcc------CCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchhh------------
Confidence 113445566666652 356789999999999998642 357999999988765100
Q ss_pred CCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEe
Q psy16627 284 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 339 (713)
Q Consensus 284 ~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y 339 (713)
.++.+.++.|..+.++. ..|..+|..++..|||+.++.
T Consensus 117 -----------------~~~~~~~v~v~~igig~-~~~~~~l~~iA~~t~G~~~~~ 154 (155)
T cd01466 117 -----------------LRADNAPIPIHTFGLGA-SHDPALLAFIAEITGGTFSYV 154 (155)
T ss_pred -----------------hcccCCCceEEEEecCC-CCCHHHHHHHHhccCceEEEe
Confidence 01234678888888754 468899999999999998864
No 20
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.46 E-value=9.1e-06 Score=80.05 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=109.2
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCe-EEEEEcCCCCCCCeeeeecCcCccCCCCCC
Q psy16627 128 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFLPSPE 205 (713)
Q Consensus 128 ~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~-V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~ 205 (713)
.++|+||+|.+.....-++.+++++...+.. ++++. +||+|+|++. .++. +|..
T Consensus 2 ~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d--~v~lv~F~~~~~~~~---------------------~~~t- 57 (178)
T cd01451 2 LVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRD--KVALIAFRGTEAEVL---------------------LPPT- 57 (178)
T ss_pred eEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEECCCCceEE---------------------eCCC-
Confidence 3679999998744322578888888887754 44444 9999999864 2210 1110
Q ss_pred CcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhc----CCC--CEEEEEecCCCCCCCCcccCCCCCC
Q psy16627 206 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ----PTG--GRITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 206 ~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~----~~G--GrI~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
..+..+...|+.++ ....+.++.||..|...++ ..+ ..|++++.|.++.|....
T Consensus 58 -------~~~~~~~~~l~~l~------~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~------- 117 (178)
T cd01451 58 -------RSVELAKRRLARLP------TGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPT------- 117 (178)
T ss_pred -------CCHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCch-------
Confidence 11223445566653 2456899999999999882 122 579999999988864211
Q ss_pred CCCCCCCCCCcchHHHH-HHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCC
Q psy16627 280 QRSNDDPPHMNPATDFY-KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 344 (713)
Q Consensus 280 ~~s~~~~~~~~~a~~fY-~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 344 (713)
..- .+++.++.+.||.+..+....+..+-..|..+++.|||..++.++.+.
T Consensus 118 --------------~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 118 --------------ADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred --------------hHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 011 567788888998887776666666778899999999999999887664
No 21
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.44 E-value=7.3e-06 Score=81.59 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 123 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
...|--.+||||+|.+... .-++.+++++...++.++++. +||||+|++.++..--..
T Consensus 10 ~~~p~~vv~llD~SgSM~~-~~l~~ak~~~~~ll~~l~~~d--~v~lv~F~~~~~~~~~~~------------------- 67 (190)
T cd01463 10 ATSPKDIVILLDVSGSMTG-QRLHLAKQTVSSILDTLSDND--FFNIITFSNEVNPVVPCF------------------- 67 (190)
T ss_pred ccCCceEEEEEECCCCCCc-HHHHHHHHHHHHHHHhCCCCC--EEEEEEeCCCeeEEeeec-------------------
Confidence 3457889999999986432 347889999999999998877 999999999877531000
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---C-------C--CEEEEEecCCCCCCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-------G--GRITIFQTCLPNRGPG 270 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-------G--GrI~~F~~g~pt~GpG 270 (713)
...++....+.++.+...|+.|+. ...+.++.||..|...+.. . + ..|++++.|.++.+.
T Consensus 68 -~~~~~~~~~~~~~~~~~~l~~l~~------~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~- 139 (190)
T cd01463 68 -NDTLVQATTSNKKVLKEALDMLEA------KGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYK- 139 (190)
T ss_pred -ccceEecCHHHHHHHHHHHhhCCC------CCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHh-
Confidence 011111112234445555555542 3357899999999988864 1 1 368889999866411
Q ss_pred cccCCCCCCCCCCCCCCCCcchHHHHHHHHH-HHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCC
Q psy16627 271 ALQSRENPNQRSNDDPPHMNPATDFYKKIAL-ECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 341 (713)
Q Consensus 271 ~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~-~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~ 341 (713)
+....+.. ...+.++.|..|.++.+..|...|..|+..+||..++.++
T Consensus 140 -----------------------~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~~~G~~~~i~~ 188 (190)
T cd01463 140 -----------------------EIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQS 188 (190)
T ss_pred -----------------------HHHHHhcccccCCCcEEEEEEecCCccccchHHHHHHhhcCCeEEEccc
Confidence 11111111 1111246666666666656889999999999999998765
No 22
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=98.34 E-value=4.1e-05 Score=91.00 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=111.2
Q ss_pred cEEEEEEEcchhHHhhchHHHHHHHHHHHh-hcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCC
Q psy16627 127 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQL-KSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 205 (713)
Q Consensus 127 p~~vFvID~s~~a~~sg~l~~~~~sl~~~L-~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~ 205 (713)
...++|||+|.+......+..++++++..| +.++++. +||||+|++..++.. . +.+..+
T Consensus 305 r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~D--rVGLVtFsssA~vl~---p---------------Lt~Its 364 (863)
T TIGR00868 305 RIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGS--WVGMVTFDSAAYIKN---E---------------LIQITS 364 (863)
T ss_pred ceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCC--EEEEEEECCceeEee---c---------------cccCCc
Confidence 458999999987543345788888888766 4566666 999999999866421 1 111111
Q ss_pred CcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCCC
Q psy16627 206 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPNQ 280 (713)
Q Consensus 206 ~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~~~~~~~~ 280 (713)
...++.|...+.. .....+++|.||..|..+|+. .++.|++++.|.++.+
T Consensus 365 ------~~dr~aL~~~L~~-------~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~------------ 419 (863)
T TIGR00868 365 ------SAERDALTANLPT-------AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTI------------ 419 (863)
T ss_pred ------HHHHHHHHHhhcc-------ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCH------------
Confidence 1123333333321 134579999999999999974 3578899988864421
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHh
Q psy16627 281 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRY 360 (713)
Q Consensus 281 ~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~ 360 (713)
..++..+.++|+.|..+.++.+. -..|..+|+.|||..++..+- .+...|...|.+.
T Consensus 420 ----------------~~~l~~lk~~gVtI~TIg~G~da--d~~L~~IA~~TGG~~f~asd~-----~dl~~L~dAF~~i 476 (863)
T TIGR00868 420 ----------------SSCFEEVKQSGAIIHTIALGPSA--AKELEELSDMTGGLRFYASDQ-----ADNNGLIDAFGAL 476 (863)
T ss_pred ----------------HHHHHHHHHcCCEEEEEEeCCCh--HHHHHHHHHhcCCEEEEeCCH-----HHHHHHHHHHHHH
Confidence 13445566789999999987664 256899999999999988542 2234566666554
Q ss_pred h
Q psy16627 361 L 361 (713)
Q Consensus 361 l 361 (713)
.
T Consensus 477 s 477 (863)
T TIGR00868 477 S 477 (863)
T ss_pred h
Confidence 3
No 23
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.22 E-value=4.5e-05 Score=73.87 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=95.9
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 207 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~ 207 (713)
.+|+||+|.+... .-++.++++++..+..+.. +.+.+||+|+|++..++.- |+ ..
T Consensus 3 vv~vlD~SgSm~~-~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~---------------------~~-~~- 58 (164)
T cd01472 3 IVFLVDGSESIGL-SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEF---------------------YL-NT- 58 (164)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEE---------------------ec-CC-
Confidence 5799999986443 3478888888888877753 2245999999998766410 00 00
Q ss_pred ceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC------C--CEEEEEecCCCCCCCCcccCCCCCC
Q psy16627 208 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT------G--GRITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 208 l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~------G--GrI~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
...++.+.+.|+.++.. ...+.+|.||..|...+... + ..|++++.|.++.+.
T Consensus 59 ----~~~~~~~~~~l~~l~~~-----~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~---------- 119 (164)
T cd01472 59 ----YRSKDDVLEAVKNLRYI-----GGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV---------- 119 (164)
T ss_pred ----CCCHHHHHHHHHhCcCC-----CCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH----------
Confidence 01234455566666531 44578999999999988641 1 346777777433210
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCc-eEEEeCC
Q psy16627 280 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPL 341 (713)
Q Consensus 280 ~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG-~v~~y~~ 341 (713)
...+..+.+.||.+-.+.+.. .|...|..++..++| +++.+..
T Consensus 120 -----------------~~~~~~l~~~gv~i~~ig~g~--~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 120 -----------------EEPAVELKQAGIEVFAVGVKN--ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred -----------------HHHHHHHHHCCCEEEEEECCc--CCHHHHHHHHCCCchheEEeccC
Confidence 122334555777655555443 499999999999987 5555543
No 24
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=98.17 E-value=5.1e-05 Score=75.04 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=94.9
Q ss_pred EEEEEEEcchhHHhh----chHHHHHHHHHHHh----hcCCCCCCceEEEEEEcC-eEEEEEcCCCCCCCeeeeecCcCc
Q psy16627 128 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQL----KSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDD 198 (713)
Q Consensus 128 ~~vFvID~s~~a~~s----g~l~~~~~sl~~~L----~~lp~~~~~~VglITF~~-~V~~y~l~~~~~~~q~~vv~dl~d 198 (713)
+-+++||+|....+. ..|++.++.+...+ +..|++ +||||+|.. ..++.
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~---~vGlv~fag~~a~v~------------------- 62 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPEN---NVGLMTMAGNSPEVL------------------- 62 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCc---cEEEEEecCCceEEE-------------------
Confidence 468999999875532 36888888887664 666655 899999976 32220
Q ss_pred cCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCccc
Q psy16627 199 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQ 273 (713)
Q Consensus 199 ~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~ 273 (713)
.|+ ......+...|+.+. ......+|.||+.|...|+. ...||++|.+++-+.=+|.
T Consensus 63 --~pl--------T~D~~~~~~~L~~i~------~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~-- 124 (187)
T cd01452 63 --VTL--------TNDQGKILSKLHDVQ------PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKD-- 124 (187)
T ss_pred --ECC--------CCCHHHHHHHHHhCC------CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHH--
Confidence 121 112345556666653 23556799999999999963 2359999999874432221
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccC
Q psy16627 274 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 331 (713)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~ 331 (713)
-.++++++.++||.||+..+....-+..-|..+.+.
T Consensus 125 ----------------------i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 125 ----------------------LVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred ----------------------HHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 247899999999999999986664444444444433
No 25
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.16 E-value=3.2e-05 Score=74.51 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=100.7
Q ss_pred EEEEEEcchhHHhh----chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 129 YLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 129 ~vFvID~s~~a~~s----g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
++||||+|.+.... ..++.+++++...++.+|++ +||+++|++..++ ..
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~l~~f~~~~~~--------------~~---------- 54 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLPGD---RVGLVSFSDSSRT--------------LS---------- 54 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHTTS---EEEEEEESTSCEE--------------EE----------
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCCCC---EEEEEEecccccc--------------cc----------
Confidence 68999999875543 25888999999999888744 8999999985321 00
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC---CEEEEEecCCCCCCCCcccCCCCCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNRGPGALQSRENPNQR 281 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~F~~g~pt~GpG~l~~~~~~~~~ 281 (713)
++...+..+.+.++.+.... ......+++.|+..|..++.... ..|++|++|.++.
T Consensus 55 -----~~t~~~~~~~~~l~~~~~~~--~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~-------------- 113 (172)
T PF13519_consen 55 -----PLTSDKDELKNALNKLSPQG--MPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS-------------- 113 (172)
T ss_dssp -----EEESSHHHHHHHHHTHHHHG----SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------
T ss_pred -----cccccHHHHHHHhhcccccc--cCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------
Confidence 11223455556666654211 23455889999999999997643 4666666664330
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeC
Q psy16627 282 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIP 340 (713)
Q Consensus 282 s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~ 340 (713)
. . .+.+..+.+.+|.|.++.+..+...-..|..+++.|||..+...
T Consensus 114 ---------~--~--~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~ 159 (172)
T PF13519_consen 114 ---------S--D--IEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVD 159 (172)
T ss_dssp ---------H--H--HHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-
T ss_pred ---------c--h--hHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEec
Confidence 0 0 13777888999999999998887666789999999999988873
No 26
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.13 E-value=0.00011 Score=72.89 Aligned_cols=157 Identities=14% Similarity=0.109 Sum_probs=91.0
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 205 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~ 205 (713)
+.-.+|+||+|.+... .+ ...++.++..++.+.. +..+||+|+|++..++. .|+.
T Consensus 4 ~~Dvv~llD~SgSm~~-~~-~~~~~~~~~l~~~~~~-~~~rvglv~Fs~~~~~~---------------------~~l~- 58 (185)
T cd01474 4 HFDLYFVLDKSGSVAA-NW-IEIYDFVEQLVDRFNS-PGLRFSFITFSTRATKI---------------------LPLT- 58 (185)
T ss_pred ceeEEEEEeCcCchhh-hH-HHHHHHHHHHHHHcCC-CCcEEEEEEecCCceEE---------------------Eecc-
Confidence 4568999999987432 22 2233555555544322 23599999999875431 1110
Q ss_pred CcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhh--cCCCCE-----EEEEecCCCCCCCCcccCCCCC
Q psy16627 206 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL--QPTGGR-----ITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 206 ~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll--~~~GGr-----I~~F~~g~pt~GpG~l~~~~~~ 278 (713)
. ....+...++.|.... ....+++|.||..|...+ ...||| |++++.|.++...+.-
T Consensus 59 ~-------~~~~~~~~l~~l~~~~---~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~------ 122 (185)
T cd01474 59 D-------DSSAIIKGLEVLKKVT---PSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKY------ 122 (185)
T ss_pred c-------cHHHHHHHHHHHhccC---CCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcc------
Confidence 0 0012333344444321 236799999999999877 334443 7888888764211100
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEE-EeCCCC
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIH-HIPLYS 343 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~-~y~~f~ 343 (713)
+ ...+.++.+.|+.|-.+.. ...+..+|..++..++ .+| ...+|.
T Consensus 123 ------------~-----~~~a~~l~~~gv~i~~vgv--~~~~~~~L~~iA~~~~-~~f~~~~~~~ 168 (185)
T cd01474 123 ------------P-----EHEAKLSRKLGAIVYCVGV--TDFLKSQLINIADSKE-YVFPVTSGFQ 168 (185)
T ss_pred ------------h-----HHHHHHHHHcCCEEEEEee--chhhHHHHHHHhCCCC-eeEecCccHH
Confidence 0 2334566677886655555 5678899999998775 454 334444
No 27
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.07 E-value=0.00017 Score=76.89 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=101.3
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
..|...+||||+|.+... .+..+++++...++. ++++. +||+|+|++.+++.. +
T Consensus 51 ~~p~~vvlvlD~SgSM~~--~~~~a~~a~~~~l~~~l~~~d--~v~lv~f~~~~~~~~--------------~------- 105 (296)
T TIGR03436 51 DLPLTVGLVIDTSGSMRN--DLDRARAAAIRFLKTVLRPND--RVFVVTFNTRLRLLQ--------------D------- 105 (296)
T ss_pred CCCceEEEEEECCCCchH--HHHHHHHHHHHHHHhhCCCCC--EEEEEEeCCceeEee--------------c-------
Confidence 358899999999986543 477788888888876 66555 999999998776421 0
Q ss_pred CCCCcceehhhhHHHHHHHHhhCccccc---------CCCCCCCchHHHHHHH-HHhhcC-C----CCE-EEEEecCCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFK---------DSLDSGSALGPALQAA-FKLLQP-T----GGR-ITIFQTCLPN 266 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~---------~~~~~~~~~G~AL~~A-~~ll~~-~----GGr-I~~F~~g~pt 266 (713)
. ...+..+...|+.|..... ......++++.||..| ..++.. . |-| |++|++|..+
T Consensus 106 ~--------t~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~ 177 (296)
T TIGR03436 106 F--------TSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDN 177 (296)
T ss_pred C--------CCCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCc
Confidence 0 0123445566666643110 0124557788887544 445543 2 333 6666666321
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc------------cCchhhcccccCCCc
Q psy16627 267 RGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY------------VDLATLSGVSKFSSG 334 (713)
Q Consensus 267 ~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~------------~~l~~l~~l~~~TGG 334 (713)
. ...-++++...|.+++|.|..+.+.... .+-..|..+|+.|||
T Consensus 178 ~------------------------~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG 233 (296)
T TIGR03436 178 R------------------------SRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGG 233 (296)
T ss_pred c------------------------hHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCC
Confidence 1 1224567888888899988888765321 245689999999999
Q ss_pred eEEEe
Q psy16627 335 CIHHI 339 (713)
Q Consensus 335 ~v~~y 339 (713)
..++.
T Consensus 234 ~~~~~ 238 (296)
T TIGR03436 234 RAFYV 238 (296)
T ss_pred eEecc
Confidence 97665
No 28
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.07 E-value=0.00014 Score=72.86 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=101.9
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
++||||+|.+... .-++.+++++...++.|+. ..+.+||+|+|++.++.. .+.. . .
T Consensus 3 i~~vlD~SgSM~~-~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~---------------~---~--- 60 (198)
T cd01470 3 IYIALDASDSIGE-EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRD---------------F---N--- 60 (198)
T ss_pred EEEEEECCCCccH-HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEeccc---------------C---C---
Confidence 6899999986433 3478899999999988864 224499999999986542 2211 0 0
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---------CC--CEEEEEecCCCCCCCCcccCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---------TG--GRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---------~G--GrI~~F~~g~pt~GpG~l~~~ 275 (713)
...+..+...|+.++... ......+.++.||..|...+.. .+ -.|++++.|.+|.|....
T Consensus 61 -----~~~~~~~~~~l~~~~~~~-~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~--- 131 (198)
T cd01470 61 -----SNDADDVIKRLEDFNYDD-HGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPL--- 131 (198)
T ss_pred -----CCCHHHHHHHHHhCCccc-ccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChh---
Confidence 001223444555554211 1123467899999988876521 11 247899999988763110
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHH------HhhCCeEEEEEEecCCccCchhhcccccCCCc--eEEEeCCCC
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALE------CTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHIPLYS 343 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~------~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG--~v~~y~~f~ 343 (713)
.+.+.++++... +...++.|..+.+.. ..|-.+|..++..||| +++...+|.
T Consensus 132 ---------------~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~-~~~~~~L~~iA~~~~g~~~~f~~~~~~ 191 (198)
T cd01470 132 ---------------PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGD-DVNKEELNDLASKKDNERHFFKLKDYE 191 (198)
T ss_pred ---------------HHHHHHHHHHhcccccccchhcceeEEEEecCc-ccCHHHHHHHhcCCCCCceEEEeCCHH
Confidence 112222332111 134456555555543 4789999999999999 567666553
No 29
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.03 E-value=0.00017 Score=69.92 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=103.2
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 205 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~ 205 (713)
|.-++||+|+|.+.. ...++.+++++...+..++++. +|++++|++.++.+ ... +.+.
T Consensus 2 ~~~v~~vlD~S~SM~-~~~~~~~~~al~~~l~~l~~~~--~~~l~~Fs~~~~~~--~~~---------------~~~~-- 59 (171)
T cd01461 2 PKEVVFVIDTSGSMS-GTKIEQTKEALLTALKDLPPGD--YFNIIGFSDTVEEF--SPS---------------SVSA-- 59 (171)
T ss_pred CceEEEEEECCCCCC-ChhHHHHHHHHHHHHHhCCCCC--EEEEEEeCCCceee--cCc---------------ceeC--
Confidence 556899999998753 2347888999999999998766 89999999876542 100 0000
Q ss_pred CcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy16627 206 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRS 282 (713)
Q Consensus 206 ~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s 282 (713)
+ .+....+.+.|+.+. ....+.++.||..|...+.. ....|++|+.|.++.
T Consensus 60 ~-----~~~~~~~~~~l~~~~------~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~--------------- 113 (171)
T cd01461 60 T-----AENVAAAIEYVNRLQ------ALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN--------------- 113 (171)
T ss_pred C-----HHHHHHHHHHHHhcC------CCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC---------------
Confidence 0 011122233344442 14457899999999998864 235777777775211
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCC
Q psy16627 283 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 342 (713)
Q Consensus 283 ~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f 342 (713)
..+.+ +.++++.+.++.|..+.++. ..+-..|..+++.|||..++..+-
T Consensus 114 ---------~~~~~-~~~~~~~~~~i~i~~i~~g~-~~~~~~l~~ia~~~gG~~~~~~~~ 162 (171)
T cd01461 114 ---------ESQIL-KNVREALSGRIRLFTFGIGS-DVNTYLLERLAREGRGIARRIYET 162 (171)
T ss_pred ---------HHHHH-HHHHHhcCCCceEEEEEeCC-ccCHHHHHHHHHcCCCeEEEecCh
Confidence 11223 44455555578777777653 356688999999999999988653
No 30
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.03 E-value=8.3e-05 Score=71.24 Aligned_cols=149 Identities=25% Similarity=0.296 Sum_probs=98.6
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 208 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l 208 (713)
.+||||+|.+.... .+.++++++..|+.|+++. ++.+|+||+.+..+. .+ +
T Consensus 3 vvilvD~S~Sm~g~--~~~~k~al~~~l~~L~~~d--~fnii~f~~~~~~~~--~~-----------------------~ 53 (155)
T PF13768_consen 3 VVILVDTSGSMSGE--KELVKDALRAILRSLPPGD--RFNIIAFGSSVRPLF--PG-----------------------L 53 (155)
T ss_pred EEEEEeCCCCCCCc--HHHHHHHHHHHHHhCCCCC--EEEEEEeCCEeeEcc--hh-----------------------H
Confidence 68999999875433 3889999999999999887 999999999776432 11 1
Q ss_pred eehh-hhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC--CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCC
Q psy16627 209 VNLS-ECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPNRGPGALQSRENPNQRSNDD 285 (713)
Q Consensus 209 ~~l~-e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~ 285 (713)
++.. +.++.....++.+. .....+.++.||+.|...+.. .--.|++++.|.++.++
T Consensus 54 ~~~~~~~~~~a~~~I~~~~-----~~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~---------------- 112 (155)
T PF13768_consen 54 VPATEENRQEALQWIKSLE-----ANSGGTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGE---------------- 112 (155)
T ss_pred HHHhHHHHHHHHHHHHHhc-----ccCCCccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCH----------------
Confidence 1111 12222333333332 126778999999999998733 34688888888764422
Q ss_pred CCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEE
Q psy16627 286 PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIH 337 (713)
Q Consensus 286 ~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~ 337 (713)
....+ ...++. ..+.+..|.+.. ..+-..|..|++.|||..+
T Consensus 113 -------~~i~~-~v~~~~-~~~~i~~~~~g~-~~~~~~L~~LA~~~~G~~~ 154 (155)
T PF13768_consen 113 -------EEILD-LVRRAR-GHIRIFTFGIGS-DADADFLRELARATGGSFH 154 (155)
T ss_pred -------HHHHH-HHHhcC-CCceEEEEEECC-hhHHHHHHHHHHcCCCEEE
Confidence 11222 222222 456677777655 3567889999999999865
No 31
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.97 E-value=0.0048 Score=72.43 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=159.4
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 123 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
++.|.-++||||+|.+.. .+-++.+++++...|..|+++. +|+||+|++.++.+. .. ..+
T Consensus 268 ~~~p~~vvfvlD~SgSM~-g~~i~~ak~al~~~l~~L~~~d--~~~ii~F~~~~~~~~--~~---------------~~~ 327 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMA-GESIEQAKSALLLALDQLRPGD--RFNIIQFDSDVTLLF--PV---------------PVP 327 (596)
T ss_pred cCCCceEEEEEECCCCCC-CccHHHHHHHHHHHHHhCCCCC--EEEEEEECCcceEec--cc---------------ccc
Confidence 345677999999998643 2347889999999999998877 999999999987541 10 011
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC--C--CEEEEEecCCCCCCCCcccCCCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT--G--GRITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G--GrI~~F~~g~pt~GpG~l~~~~~~ 278 (713)
. . .+....+...++.|. ...++.+..||..|....... + .+|+++++|..+-
T Consensus 328 ~-~------~~~~~~a~~~i~~l~------a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~----------- 383 (596)
T TIGR03788 328 A-T------AHNLARARQFVAGLQ------ADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN----------- 383 (596)
T ss_pred C-C------HHHHHHHHHHHhhCC------CCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC-----------
Confidence 1 0 112233344455553 235688999999999875432 1 2689999985210
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 358 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 358 (713)
.....+.+. ....++.|..|.+..+ .+-..|..+++.+||..++..+-. ...+.+.+.+.
T Consensus 384 -------------~~~~~~~~~--~~~~~~ri~tvGiG~~-~n~~lL~~lA~~g~G~~~~i~~~~----~~~~~~~~~l~ 443 (596)
T TIGR03788 384 -------------EDALFQLIR--TKLGDSRLFTVGIGSA-PNSYFMRKAAQFGRGSFTFIGSTD----EVQRKMSQLFA 443 (596)
T ss_pred -------------HHHHHHHHH--HhcCCceEEEEEeCCC-cCHHHHHHHHHcCCCEEEECCCHH----HHHHHHHHHHH
Confidence 011223332 2234567777776544 677889999999999877654311 12234444444
Q ss_pred HhhccccccceEEEEEecCCceEEEEecCccccCCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCE
Q psy16627 359 RYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDR 438 (713)
Q Consensus 359 ~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~r 438 (713)
+ +.....-+..+++.... +..++- -.++.+-....+.+.-.+.. . ...+ .+......+..
T Consensus 444 ~-~~~p~l~~v~v~~~~~~---~~~v~P---------~~~p~L~~g~~l~v~g~~~~-~--~~~i----~v~g~~~~~~~ 503 (596)
T TIGR03788 444 K-LEQPALTDIALTFDNGN---AADVYP---------SPIPDLYRGEPLQIAIKLQQ-A--AGEL----QLTGRTGSQPW 503 (596)
T ss_pred h-hcCeEEEEEEEEEcCCc---cceecc---------CCCccccCCCEEEEEEEecC-C--CCeE----EEEEEcCCceE
Confidence 4 33445555555553221 112211 23555666667777665432 1 1222 22223223332
Q ss_pred EEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHh
Q psy16627 439 RIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSL-SDAREAFLNVVCDVLSTYKMT 503 (713)
Q Consensus 439 riRV~T~~l~vt~~~~~v~~~~D~ea~~~llar~av~~~~~~~~-~d~r~~l~~~li~~l~~yr~~ 503 (713)
. ..+++... .+-..+..++||.-+...+.... ..-.+.+.+.++++-.+|+-.
T Consensus 504 ~-----~~~~~~~~-------~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~~~~~Ii~Lsl~y~lv 557 (596)
T TIGR03788 504 S-----QQLDLDSA-------APGKGIDKLWARRKIDSLEDSLRYGANEEKVKDQVTALALNHHLV 557 (596)
T ss_pred E-----EEEecCCC-------CCcchHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhCCC
Confidence 2 22222211 13344667788877766543211 011234667788888888763
No 32
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.93 E-value=0.00022 Score=72.99 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=105.7
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
|.-.+|+||+|.+--.. -++.+++.++..++.+... ..++||+|+|++.+++. .|+
T Consensus 2 ~~DlvfllD~S~Sm~~~-~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~---------------------~~l- 58 (224)
T cd01475 2 PTDLVFLIDSSRSVRPE-NFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQE---------------------FPL- 58 (224)
T ss_pred CccEEEEEeCCCCCCHH-HHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEE---------------------ecc-
Confidence 44579999999863322 3788899999888877432 34699999999987642 011
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhh-cC-CC--------CE-EEEEecCCCCCCCCccc
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-QP-TG--------GR-ITIFQTCLPNRGPGALQ 273 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~~-~G--------Gr-I~~F~~g~pt~GpG~l~ 273 (713)
..+ ..++.+.+.|+.+... ...+.+|.||..|...+ .. .| -| |++++.|.++.
T Consensus 59 ~~~-----~~~~~l~~~i~~i~~~-----~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~------ 122 (224)
T cd01475 59 GRF-----KSKADLKRAVRRMEYL-----ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD------ 122 (224)
T ss_pred ccc-----CCHHHHHHHHHhCcCC-----CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc------
Confidence 000 1234455666666432 24567899999998743 21 12 13 57777775321
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCC-ceEEEeCCCCCCcchhHHH
Q psy16627 274 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSS-GCIHHIPLYSGKNMSHVYQ 352 (713)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TG-G~v~~y~~f~~~~~~~~~~ 352 (713)
=.++.+.++.+.||.| |+.+-...+..+|..++..++ +.++..++|+. -+.
T Consensus 123 ---------------------~~~~~a~~lk~~gv~i--~~VgvG~~~~~~L~~ias~~~~~~~f~~~~~~~-----l~~ 174 (224)
T cd01475 123 ---------------------DVSEVAAKARALGIEM--FAVGVGRADEEELREIASEPLADHVFYVEDFST-----IEE 174 (224)
T ss_pred ---------------------cHHHHHHHHHHCCcEE--EEEeCCcCCHHHHHHHhCCCcHhcEEEeCCHHH-----HHH
Confidence 0245677888888655 555445578899999998765 46777777763 245
Q ss_pred HHHHHHHh
Q psy16627 353 LDRMFSRY 360 (713)
Q Consensus 353 ~~~dl~~~ 360 (713)
+...|...
T Consensus 175 ~~~~l~~~ 182 (224)
T cd01475 175 LTKKFQGK 182 (224)
T ss_pred Hhhhcccc
Confidence 55555443
No 33
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.92 E-value=0.00021 Score=70.84 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=101.7
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-------CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCc
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-------DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 198 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-------~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d 198 (713)
|--.+|+||+|.+..++ -++.+++.++..++.+.. ....+||+|+|++..++.
T Consensus 2 ~~dvv~vlD~S~Sm~~~-~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~------------------- 61 (186)
T cd01480 2 PVDITFVLDSSESVGLQ-NFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVE------------------- 61 (186)
T ss_pred CeeEEEEEeCCCccchh-hHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceee-------------------
Confidence 34478999999864433 366678877777776622 123599999999875531
Q ss_pred cCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCccc
Q psy16627 199 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQ 273 (713)
Q Consensus 199 ~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~ 273 (713)
.|.. .. ...+..+.+.|+.++. ....+++|.||..|...+.. ....|++++.|.++.++.
T Consensus 62 --~~l~-~~----~~~~~~l~~~i~~l~~-----~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~--- 126 (186)
T cd01480 62 --AGFL-RD----IRNYTSLKEAVDNLEY-----IGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPD--- 126 (186)
T ss_pred --Eecc-cc----cCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcc---
Confidence 0100 00 0134556666777642 13468999999999998863 124667777776532110
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCC
Q psy16627 274 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 344 (713)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 344 (713)
.-..+.+.++.+.||.|-.+.... .+...|..++...+|. ++-++|.+
T Consensus 127 --------------------~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~-~~~~~~~~ 174 (186)
T cd01480 127 --------------------GGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSA-LYRENFAE 174 (186)
T ss_pred --------------------hhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcch-hhhcchhh
Confidence 012455667778888766555533 7888899999888776 55566653
No 34
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.88 E-value=0.00035 Score=66.59 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=98.1
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 207 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~ 207 (713)
.+|+||+|.+.. ...++.+++.+...+..+.. +.+.+||+++|++..... .+.....
T Consensus 3 i~~llD~S~Sm~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~---------------------~~~~~~~ 60 (161)
T cd01450 3 IVFLLDGSESVG-PENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVE---------------------FSLNDYK 60 (161)
T ss_pred EEEEEeCCCCcC-HHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEE---------------------EECCCCC
Confidence 579999998643 23577888888888877754 234599999999854321 0100000
Q ss_pred ceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC-------CEEEEEecCCCCCCCCcccCCCCCCC
Q psy16627 208 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-------GRITIFQTCLPNRGPGALQSRENPNQ 280 (713)
Q Consensus 208 l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-------GrI~~F~~g~pt~GpG~l~~~~~~~~ 280 (713)
.+..+...++.+.... ...+.++.||..|...+.... ..|++|++|.++.++
T Consensus 61 ------~~~~~~~~i~~~~~~~----~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~----------- 119 (161)
T cd01450 61 ------SKDDLLKAVKNLKYLG----GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG----------- 119 (161)
T ss_pred ------CHHHHHHHHHhcccCC----CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-----------
Confidence 1234445555554221 147899999999999887542 368889998877643
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCC
Q psy16627 281 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSS 333 (713)
Q Consensus 281 ~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TG 333 (713)
-..++++++.++++.|..+.+.. .+...|..++..||
T Consensus 120 --------------~~~~~~~~~~~~~v~v~~i~~g~--~~~~~l~~la~~~~ 156 (161)
T cd01450 120 --------------DPKEAAAKLKDEGIKVFVVGVGP--ADEEELREIASCPS 156 (161)
T ss_pred --------------chHHHHHHHHHCCCEEEEEeccc--cCHHHHHHHhCCCC
Confidence 01456777777888888887765 78888899888883
No 35
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.80 E-value=0.00099 Score=65.54 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=100.6
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
.+|+||.|.+.-.. -++.+++.++..++.+..+ ..++||+|+|++..++. .+. |
T Consensus 3 i~fvlD~S~S~~~~-~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~------------~----------- 58 (177)
T cd01469 3 IVFVLDGSGSIYPD-DFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLN------------E----------- 58 (177)
T ss_pred EEEEEeCCCCCCHH-HHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecC------------c-----------
Confidence 58999999763322 3778888888888877653 24699999999986542 111 1
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhh-c-CCCC------EEEEEecCCCCCCCCcccCCCCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-Q-PTGG------RITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~-~~GG------rI~~F~~g~pt~GpG~l~~~~~~ 278 (713)
+ ..++.+..+++.++.. ...+.+|.||..|...+ . ..|+ -+++++.|..+.|+-
T Consensus 59 ~-----~~~~~~~~~i~~~~~~-----~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~-------- 120 (177)
T cd01469 59 Y-----RTKEEPLSLVKHISQL-----LGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPL-------- 120 (177)
T ss_pred c-----CCHHHHHHHHHhCccC-----CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccc--------
Confidence 0 0112234445555321 23489999999999876 2 2333 377788877554220
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc---cCchhhcccccCCCc-eEEEeCCCC
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSG-CIHHIPLYS 343 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~---~~l~~l~~l~~~TGG-~v~~y~~f~ 343 (713)
. ++.+..+...|+.|-.+....+. .+..+|..++..+++ +++..++|+
T Consensus 121 ----------------~-~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ias~p~~~h~f~~~~~~ 172 (177)
T cd01469 121 ----------------L-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASKPPEEHFFNVTDFA 172 (177)
T ss_pred ----------------c-HHHHHHHHHCCcEEEEEEecccccccccHHHHHHHhcCCcHHhEEEecCHH
Confidence 0 34566677788877777765542 347889999988874 677777765
No 36
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.73 E-value=0.00053 Score=68.50 Aligned_cols=150 Identities=23% Similarity=0.288 Sum_probs=89.1
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-------CCCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-------DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDID 197 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-------~~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~ 197 (713)
+.=.+||||.|.+.-. +-++.+++.+...+..+.. ...+|||+|+|++..++. .|. |..
T Consensus 19 ~~DivfvlD~S~Sm~~-~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~------------d~~ 85 (193)
T cd01477 19 WLDIVFVVDNSKGMTQ-GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLN------------DLQ 85 (193)
T ss_pred eeeEEEEEeCCCCcch-hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecc------------ccc
Confidence 5668999999987432 2378888888887765543 224699999999987752 221 100
Q ss_pred ccCCCCCCCcceehhhhHHHHHHHHhh-CcccccCCCCCCCchHHHHHHHHHhhcC--CC-----CE-EEEEecCCCCCC
Q psy16627 198 DIFLPSPENILVNLSECYDMIVDLLKQ-LPGKFKDSLDSGSALGPALQAAFKLLQP--TG-----GR-ITIFQTCLPNRG 268 (713)
Q Consensus 198 d~f~P~~~~~l~~l~e~~~~i~~lL~~-L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~G-----Gr-I~~F~~g~pt~G 268 (713)
....+.+.++. +... .....+.+|.||..|..++.. .| .| |+++++|.-+.|
T Consensus 86 ----------------~~~~~~~ai~~~~~~~---~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~ 146 (193)
T cd01477 86 ----------------SFDDLYSQIQGSLTDV---SSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG 146 (193)
T ss_pred ----------------CHHHHHHHHHHHhhcc---ccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC
Confidence 11222223332 1111 112368899999999999964 23 36 555655632211
Q ss_pred CCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCC
Q psy16627 269 PGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 332 (713)
Q Consensus 269 pG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~T 332 (713)
-+. ..+.|+++.+.||.|-.+....+ .|-..|..|++..
T Consensus 147 ~~~------------------------~~~~a~~l~~~GI~i~tVGiG~~-~d~~~~~~L~~ia 185 (193)
T cd01477 147 SND------------------------PRPIAARLKSTGIAIITVAFTQD-ESSNLLDKLGKIA 185 (193)
T ss_pred CCC------------------------HHHHHHHHHHCCCEEEEEEeCCC-CCHHHHHHHHHhc
Confidence 100 14678889999999988888653 3433344444433
No 37
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.73 E-value=0.001 Score=64.39 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=93.0
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 207 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~ 207 (713)
.+|++|.|.+--+.+ ++.+++.++..++.+.- ..+++||+|+|++..++. .|+ ..+
T Consensus 3 v~~vlD~S~Sm~~~~-~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~---------------------~~l-~~~ 59 (164)
T cd01482 3 IVFLVDGSWSIGRSN-FNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTE---------------------FDL-NAY 59 (164)
T ss_pred EEEEEeCCCCcChhh-HHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEE---------------------Eec-CCC
Confidence 689999998754333 67788888888776632 134699999999976442 011 011
Q ss_pred ceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHh-hcC-CC------CEEEEEecCCCCCCCCcccCCCCCC
Q psy16627 208 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TG------GRITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 208 l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~G------GrI~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
...+.+.+.|++++. ....+.+|.||..|... +.. .| ..|++|+.|.++.
T Consensus 60 -----~~~~~l~~~l~~~~~-----~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~------------ 117 (164)
T cd01482 60 -----TSKEDVLAAIKNLPY-----KGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD------------ 117 (164)
T ss_pred -----CCHHHHHHHHHhCcC-----CCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc------------
Confidence 122344555665542 23457899999987764 442 22 2488888876431
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCc-eEEEeC
Q psy16627 280 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIP 340 (713)
Q Consensus 280 ~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG-~v~~y~ 340 (713)
-.++.|.++.+.||.+ |+++.+..+..+|..++..+.+ +++...
T Consensus 118 ---------------~~~~~a~~lk~~gi~i--~~ig~g~~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 118 ---------------DVELPARVLRNLGVNV--FAVGVKDADESELKMIASKPSETHVFNVA 162 (164)
T ss_pred ---------------hHHHHHHHHHHCCCEE--EEEecCcCCHHHHHHHhCCCchheEEEcC
Confidence 0145677777788754 4444455668888888888654 454443
No 38
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=97.70 E-value=0.00084 Score=66.35 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=92.3
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEE-EEcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~-y~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
++||||+|.+.-....++.+++.+...++.++. +...+||+|+|++..+. +.+...
T Consensus 3 v~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~---------------------- 60 (186)
T cd01471 3 LYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSP---------------------- 60 (186)
T ss_pred EEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCc----------------------
Confidence 689999998765554478889988888887753 23459999999987663 222210
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC-C------CEEEEEecCCCCCCCCcccCCCCCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-G------GRITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-G------GrI~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
....+..+.++++.|... ......++++.||..|...+... | ..|+++++|.++.++..
T Consensus 61 ----~~~~~~~~~~~i~~l~~~--~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~-------- 126 (186)
T cd01471 61 ----NSTNKDLALNAIRALLSL--YYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRT-------- 126 (186)
T ss_pred ----cccchHHHHHHHHHHHhC--cCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcch--------
Confidence 001122222333333211 11245688999999999988642 2 25888888876542110
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccC
Q psy16627 280 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 331 (713)
Q Consensus 280 ~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~ 331 (713)
.+.+.++.+.|+.|-++.+. +..|...|..++..
T Consensus 127 -----------------~~~a~~l~~~gv~v~~igiG-~~~d~~~l~~ia~~ 160 (186)
T cd01471 127 -----------------LKEARKLRERGVIIAVLGVG-QGVNHEENRSLVGC 160 (186)
T ss_pred -----------------hHHHHHHHHCCCEEEEEEee-hhhCHHHHHHhcCC
Confidence 13456667788877766664 34666677766654
No 39
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=97.68 E-value=7.5e-05 Score=62.46 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=30.3
Q ss_pred cCccccccccccccCeEEEEeCCceEEEEecCC
Q psy16627 589 IPRILQLSAERLQATGTYLLNMPDLIIILVRHG 621 (713)
Q Consensus 589 ~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~ 621 (713)
.|..++++.++|.++++||||+|..||+|+|+.
T Consensus 4 ~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~ 36 (76)
T PF00626_consen 4 RPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKK 36 (76)
T ss_dssp EEEEESSSGGGEETTSEEEEEESSEEEEEEHTT
T ss_pred cCCcCCCCHHHcCCCCEEEEEeCCCcEEEEecc
Confidence 455677999999999999999999999999999
No 40
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=97.66 E-value=0.0015 Score=61.40 Aligned_cols=148 Identities=22% Similarity=0.311 Sum_probs=98.1
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 128 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 128 ~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
.++|+||+|.+. ....++.+++.+...+..++.. ...+||+++|+...+.+ .+....
T Consensus 2 ~v~~viD~S~Sm-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~---------------------~~~~~~ 59 (161)
T cd00198 2 DIVFLLDVSGSM-GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVV---------------------LPLTTD 59 (161)
T ss_pred cEEEEEeCCCCc-CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCcccee---------------------eccccc
Confidence 378999999875 3456888999999999888762 23499999999833221 000000
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCCCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPNQR 281 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~~~~~~~~~ 281 (713)
...+.+...++.+.. .......+..|+..|...+.. ....|++|++|.++.+. .
T Consensus 60 ------~~~~~~~~~~~~~~~----~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~-----~------ 118 (161)
T cd00198 60 ------TDKADLLEAIDALKK----GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGP-----E------ 118 (161)
T ss_pred ------CCHHHHHHHHHhccc----CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCc-----c------
Confidence 122344455555532 345667889999999999865 35678888888765543 0
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCC
Q psy16627 282 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 332 (713)
Q Consensus 282 s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~T 332 (713)
-.++...++.+.++.+.++.+.. ..+-..+..++..|
T Consensus 119 -------------~~~~~~~~~~~~~v~v~~v~~g~-~~~~~~l~~l~~~~ 155 (161)
T cd00198 119 -------------LLAEAARELRKLGITVYTIGIGD-DANEDELKEIADKT 155 (161)
T ss_pred -------------hhHHHHHHHHHcCCEEEEEEcCC-CCCHHHHHHHhccc
Confidence 01345666677799998888876 35556777777776
No 41
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.61 E-value=0.0021 Score=72.98 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=99.4
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEE-EEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~-y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
..-.+||||+|.+--...+++.++..+...++.+.. ..+++||+|+|++..+. +.+....
T Consensus 42 ~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~------------------ 103 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGA------------------ 103 (576)
T ss_pred CceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCc------------------
Confidence 566899999998755455667788888888877754 34568999999887653 2332211
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC------CEEEEEecCCCCCCCCcccCCCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG------GRITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G------GrI~~F~~g~pt~GpG~l~~~~~ 277 (713)
+..+..+...|..|.... .....+.+|.||..|...+...| +-||+|+.|.++.+.
T Consensus 104 --------s~Dk~~aL~~I~sL~~~~--~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~-------- 165 (576)
T PTZ00441 104 --------SKDKEQALIIVKSLRKTY--LPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKY-------- 165 (576)
T ss_pred --------cccHHHHHHHHHHHHhhc--cCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcc--------
Confidence 001122223333332110 12346889999999988886543 568888888754210
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccc----cCCCceEEEeCCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVS----KFSSGCIHHIPLYS 343 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~----~~TGG~v~~y~~f~ 343 (713)
+- .+.|.++.+.||.|-++.++. ..+...+..++ ..++|.+|...+|.
T Consensus 166 ----------------dv-leaAq~LR~~GVeI~vIGVG~-g~n~e~LrlIAgC~p~~g~c~~Y~vadf~ 217 (576)
T PTZ00441 166 ----------------RA-LEESRKLKDRNVKLAVIGIGQ-GINHQFNRLLAGCRPREGKCKFYSDADWE 217 (576)
T ss_pred ----------------cH-HHHHHHHHHCCCEEEEEEeCC-CcCHHHHHHHhccCCCCCCCceEEeCCHH
Confidence 00 134566777888777776643 35555455444 33456677776775
No 42
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.55 E-value=0.002 Score=75.28 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=116.1
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
...-.++||||+|.+. ..+-++.+|+++...+.. +.... +||+|+|++...- .+ +|
T Consensus 405 ~~~~~v~fvvD~SGSM-~~~rl~~aK~av~~Ll~~~~~~~D--~v~Li~F~~~~a~------------~~--------lp 461 (589)
T TIGR02031 405 KSGRLLIFVVDASGSA-AVARMSEAKGAVELLLGEAYVHRD--QVSLIAFRGTAAE------------VL--------LP 461 (589)
T ss_pred ccCceEEEEEECCCCC-ChHHHHHHHHHHHHHHHhhccCCC--EEEEEEECCCCce------------EE--------CC
Confidence 3456788999999864 333588899998888865 33334 8999999754310 01 11
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCC--EEEEEecCCCCCCCCcccCCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGG--RITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GG--rI~~F~~g~pt~GpG~l~~~~~ 277 (713)
... ..+.+...|+.|+ ....+.++.||..|...+.. .++ .|++++.|.+|.|-+.....+.
T Consensus 462 ~t~--------~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~ 527 (589)
T TIGR02031 462 PSR--------SVEQAKRRLDVLP------GGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIK 527 (589)
T ss_pred CCC--------CHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCccccccc
Confidence 111 2233345566664 24568899999999998863 243 6999999999987532100000
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 343 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~ 343 (713)
+. ..+..+-...+|..+.+.||.+-++-+...+.+..-+..|++..||..++.++-+
T Consensus 528 ~~---------~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 528 AD---------REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred cc---------chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 00 1223344467788899999887777776666667778899999999999988765
No 43
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.54 E-value=0.0027 Score=61.79 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=94.9
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 207 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~ 207 (713)
.+|+||.|.+-- ..-++.+++.++..++.++- ...++||+|+|++..+.. + ++.+.
T Consensus 3 ivfllD~S~Si~-~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~-~-------------~l~~~-------- 59 (165)
T cd01481 3 IVFLIDGSDNVG-SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPE-F-------------YLNTH-------- 59 (165)
T ss_pred EEEEEeCCCCcC-HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEE-E-------------ecccc--------
Confidence 589999997633 23478888888888888764 235799999999876531 1 01110
Q ss_pred ceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHh-hcC-CCCE--------EEEEecCCCCCCCCcccCCCC
Q psy16627 208 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TGGR--------ITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 208 l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~GGr--------I~~F~~g~pt~GpG~l~~~~~ 277 (713)
..++.+.+.+++++-. ....+.+|.||..+... +.. .|+| ++++++|..+-
T Consensus 60 -----~~~~~l~~~i~~i~~~----~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d---------- 120 (165)
T cd01481 60 -----STKADVLGAVRRLRLR----GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD---------- 120 (165)
T ss_pred -----CCHHHHHHHHHhcccC----CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc----------
Confidence 0223345556666421 12235799999988764 443 3433 56777764220
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 342 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f 342 (713)
=..+-|..+.+.|| .+|+.+....+..+|..++... -+++..++|
T Consensus 121 -----------------~~~~~a~~lr~~gv--~i~~vG~~~~~~~eL~~ias~p-~~vf~v~~f 165 (165)
T cd01481 121 -----------------DVERPAVALKRAGI--VPFAIGARNADLAELQQIAFDP-SFVFQVSDF 165 (165)
T ss_pred -----------------hHHHHHHHHHHCCc--EEEEEeCCcCCHHHHHHHhCCC-ccEEEecCC
Confidence 12456777777775 5677766668888888888665 356655554
No 44
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=97.45 E-value=0.0054 Score=59.11 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=105.3
Q ss_pred cEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCC
Q psy16627 127 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 205 (713)
Q Consensus 127 p~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~ 205 (713)
.-++|+||+|.+.. ...++.+++.+...+..+... ...+||+++|++..+.+. |..
T Consensus 2 ~~v~l~vD~S~SM~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~---------------------~~~- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG-PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLF---------------------PLN- 58 (177)
T ss_pred ccEEEEEeCCCccc-hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEE---------------------ccc-
Confidence 35789999998753 345788888888888887652 245999999999443321 100
Q ss_pred CcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---C-----CCEEEEEecCCCCCCCCcccCCCC
Q psy16627 206 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-----GGRITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 206 ~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-----GGrI~~F~~g~pt~GpG~l~~~~~ 277 (713)
.......+...++.+... ......++.|+..|...++. . .-.|++|++|.++.+
T Consensus 59 -----~~~~~~~~~~~i~~~~~~----~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~--------- 120 (177)
T smart00327 59 -----DSRSKDALLEALASLSYK----LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG--------- 120 (177)
T ss_pred -----ccCCHHHHHHHHHhcCCC----CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC---------
Confidence 011234455666665421 34557799999999998751 1 236888888876653
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEE
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 338 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~ 338 (713)
..+.+...++.+.+|.+..+.+..+. +-..+..++..++|...+
T Consensus 121 ----------------~~~~~~~~~~~~~~i~i~~i~~~~~~-~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 121 ----------------GDLLKAAKELKRSGVKVFVVGVGNDV-DEEELKKLASAPGGVYVF 164 (177)
T ss_pred ----------------ccHHHHHHHHHHCCCEEEEEEccCcc-CHHHHHHHhCCCcceEEe
Confidence 12366777788888888888876543 778899999999987765
No 45
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.38 E-value=0.0019 Score=76.22 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=106.4
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCe-EEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~-V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
....++||||+|.+....+-+..++.++...+.. ..... +||+|+|+.. ..+ .+|
T Consensus 464 ~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D--~v~lI~F~g~~a~~---------------------~~p 520 (633)
T TIGR02442 464 AGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRD--KVALITFRGEEAEV---------------------LLP 520 (633)
T ss_pred CCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEECCCCceE---------------------EcC
Confidence 3567889999998754334577788887777643 33334 8999999753 221 122
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-------CCCEEEEEecCCCCCCCCcccCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-------TGGRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-------~GGrI~~F~~g~pt~GpG~l~~~ 275 (713)
. ......+...|+.|+ ....+.++.||..|..++.. ..+.|++++.|.+|.|.+. .
T Consensus 521 ~--------t~~~~~~~~~L~~l~------~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~---~ 583 (633)
T TIGR02442 521 P--------TSSVELAARRLEELP------TGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGG---E 583 (633)
T ss_pred C--------CCCHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCC---C
Confidence 1 112334445666664 24568899999999998872 3367999999999886211 0
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEe
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 339 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y 339 (713)
+ +..+ -..+|.++.+.||.+.++-+....++..-+..||+.+||..+..
T Consensus 584 -~-------------~~~~-~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 584 -P-------------PTDD-ARTIAAKLAARGILFVVIDTESGFVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred -C-------------hHHH-HHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCeEEec
Confidence 0 0111 24567777777877766666566677788999999999998864
No 46
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.36 E-value=0.0033 Score=60.92 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=94.6
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcC-CCCCCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~l-p~~~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
.+|+||.|.+.-.. -++.+++.+...++.+ ..+...+||+|+|++..+++ .+...
T Consensus 2 ivflvD~S~sm~~~-~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~---------------------- 58 (178)
T PF00092_consen 2 IVFLVDTSGSMSGD-NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDY---------------------- 58 (178)
T ss_dssp EEEEEE-STTSCHH-HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSH----------------------
T ss_pred EEEEEeCCCCCchH-HHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccc----------------------
Confidence 58999999864432 3677889888888866 33445699999999988732 11110
Q ss_pred cceehhhhHHHHHHHH-hhCcccccCCCCCCCchHHHHHHHHHhhcCC--C------CEEEEEecCCCCCCCCcccCCCC
Q psy16627 207 ILVNLSECYDMIVDLL-KQLPGKFKDSLDSGSALGPALQAAFKLLQPT--G------GRITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL-~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G------GrI~~F~~g~pt~GpG~l~~~~~ 277 (713)
.....+...+ ..++ .....+.+|.||..|...+... | .-|+++++|.++.++-.
T Consensus 59 ------~~~~~~~~~i~~~~~-----~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~------ 121 (178)
T PF00092_consen 59 ------QSKNDLLNAINDSIP-----SSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSP------ 121 (178)
T ss_dssp ------SSHHHHHHHHHTTGG-----CCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGH------
T ss_pred ------ccccccccccccccc-----ccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcch------
Confidence 0112222222 3332 2445677999999999988643 2 24778888776553210
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccC--CCceEEEeCCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF--SSGCIHHIPLYS 343 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~--TGG~v~~y~~f~ 343 (713)
...+..+.+. ..|.+|+.+.+..+..+|..++.. .+|++++..+|.
T Consensus 122 -------------------~~~~~~~~~~-~~i~~~~ig~~~~~~~~l~~la~~~~~~~~~~~~~~~~ 169 (178)
T PF00092_consen 122 -------------------SEEAANLKKS-NGIKVIAIGIDNADNEELRELASCPTSEGHVFYLADFS 169 (178)
T ss_dssp -------------------HHHHHHHHHH-CTEEEEEEEESCCHHHHHHHHSHSSTCHHHEEEESSHH
T ss_pred -------------------HHHHHHHHHh-cCcEEEEEecCcCCHHHHHHHhCCCCCCCcEEEcCCHH
Confidence 1111111111 455666666677888888888855 447888887765
No 47
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.35 E-value=0.012 Score=58.78 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=92.1
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
.+|+||.|.+.-+..+-..+++.++..++.+.-. .+++||+|+|++..+++ .+...
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~---------------------- 60 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDE---------------------- 60 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcc----------------------
Confidence 5899999987554444335677777777776532 35699999999877542 22110
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC-CCE------EEEEecCCCCCCCCcccCCCCCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-GGR------ITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-GGr------I~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
....+..+...++.+..... ....+.+|.||..|...+... |+| +++++.|..+.+-
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~--~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~---------- 124 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYR--SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSAS---------- 124 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccC--CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcc----------
Confidence 00123344455556543211 235678999999998877543 322 7777777533210
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccC
Q psy16627 280 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 331 (713)
Q Consensus 280 ~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~ 331 (713)
..=-.+.|+.+.+.||.|-.+.... .+-.++..++..
T Consensus 125 -------------~~~~~~~a~~lk~~gV~i~~vGiG~--~~~~el~~ia~~ 161 (192)
T cd01473 125 -------------KKELQDISLLYKEENVKLLVVGVGA--ASENKLKLLAGC 161 (192)
T ss_pred -------------hhhHHHHHHHHHHCCCEEEEEEecc--ccHHHHHHhcCC
Confidence 0001356778888999887777754 456777777754
No 48
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.28 E-value=0.015 Score=55.89 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=66.8
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCe--EEEE-EcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSA--VHFY-SLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~--V~~y-~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
++|++|+|.+... .++..++.++..+..+... .+.+||+|+|++. .++. .+..
T Consensus 3 v~~llD~S~Sm~~--~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~--------------------- 59 (163)
T cd01476 3 LLFVLDSSGSVRG--KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPK--------------------- 59 (163)
T ss_pred EEEEEeCCcchhh--hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCC---------------------
Confidence 6899999986543 3667788888888777542 2459999999883 3321 1100
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-C----C--CEEEEEecCCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-T----G--GRITIFQTCLPNR 267 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-~----G--GrI~~F~~g~pt~ 267 (713)
...++.+...++.|.. ....+.+|.||..|..++.. . + ..|+++++|.++.
T Consensus 60 -------~~~~~~l~~~i~~l~~-----~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~ 117 (163)
T cd01476 60 -------HNDGEELLEKVDNLRF-----IGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD 117 (163)
T ss_pred -------CCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC
Confidence 0123344555666641 23467899999999999952 1 1 3588888886553
No 49
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.26 E-value=0.01 Score=68.99 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=110.4
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCe-EEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~-V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
..+-..+||||+|.+.. ..-+..+|.++...|.. +.... +||+|+|++. ..+ + +
T Consensus 399 ~~~~~vvfvvD~SGSM~-~~rl~~aK~a~~~ll~~ay~~rD--~v~lI~F~g~~a~~-------------~--------l 454 (584)
T PRK13406 399 RSETTTIFVVDASGSAA-LHRLAEAKGAVELLLAEAYVRRD--QVALVAFRGRGAEL-------------L--------L 454 (584)
T ss_pred cCCccEEEEEECCCCCc-HhHHHHHHHHHHHHHHhhcCCCC--EEEEEEECCCceeE-------------E--------c
Confidence 34688999999998753 33688899998888854 34444 8999999654 321 1 2
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSRE 276 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~F~~g~pt~GpG~l~~~~ 276 (713)
|. .+ +...+...|+.|+ ....+.++.||..|..+++. .| -.|++++.|-+|.|.+.-..+.
T Consensus 455 pp-T~-------~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~ 520 (584)
T PRK13406 455 PP-TR-------SLVRAKRSLAGLP------GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRA 520 (584)
T ss_pred CC-Cc-------CHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCcccccccc
Confidence 21 11 2223344555664 34678999999999998753 22 4899999999998764222111
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCC
Q psy16627 277 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 344 (713)
Q Consensus 277 ~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 344 (713)
.+. ..+ ..+|..+.+.||.+=++.+.... ...+..|++.+||..+..+.-+.
T Consensus 521 ~~~----------~~~----~~~a~~~~~~gi~~~vId~g~~~--~~~~~~LA~~~gg~y~~l~~~~a 572 (584)
T PRK13406 521 QAE----------EDA----LAAARALRAAGLPALVIDTSPRP--QPQARALAEAMGARYLPLPRADA 572 (584)
T ss_pred chh----------hHH----HHHHHHHHhcCCeEEEEecCCCC--cHHHHHHHHhcCCeEEECCCCCH
Confidence 100 011 45677788888776666655433 34589999999999999988664
No 50
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.09 E-value=0.0022 Score=62.94 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=85.2
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC----CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~----~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
.+||||+|.+.. ...++.++++++..++.+.++ .+.+||+|+|++..++.- .. .++++.
T Consensus 6 v~~llD~SgSM~-~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~---~l--------~~~~~~----- 68 (176)
T cd01464 6 IYLLLDTSGSMA-GEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV---PL--------TPLESF----- 68 (176)
T ss_pred EEEEEECCCCCC-ChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec---CC--------ccHHhc-----
Confidence 579999998643 234778888888888887643 356999999999876421 00 000000
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC---------C---CEEEEEecCCCCCCCCcc
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---------G---GRITIFQTCLPNRGPGAL 272 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---------G---GrI~~F~~g~pt~GpG~l 272 (713)
....+ .....+++|.||..|...+... + ..|+++++|.|+.++.
T Consensus 69 ----------------~~~~l------~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~-- 124 (176)
T cd01464 69 ----------------QPPRL------TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLT-- 124 (176)
T ss_pred ----------------CCCcc------cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHH--
Confidence 00111 1235789999999999988531 1 1589999988654221
Q ss_pred cCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhccccc
Q psy16627 273 QSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSK 330 (713)
Q Consensus 273 ~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~ 330 (713)
.+. +....+.+.++.|..|.+.. ..+...|..++.
T Consensus 125 ------------------~~~----~~~~~~~~~~~~i~~igiG~-~~~~~~L~~ia~ 159 (176)
T cd01464 125 ------------------AAI----ERIKEARDSKGRIVACAVGP-KADLDTLKQITE 159 (176)
T ss_pred ------------------HHH----HHHHhhcccCCcEEEEEecc-ccCHHHHHHHHC
Confidence 011 22233334467777777655 577777777775
No 51
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=96.90 E-value=0.006 Score=52.82 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.5
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCCCChhH
Q psy16627 593 LQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 626 (713)
Q Consensus 593 l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~ 626 (713)
.+++.++|.++.+||||+|..||+|+|+.+++.-
T Consensus 16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~e 49 (90)
T smart00262 16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDE 49 (90)
T ss_pred cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHH
Confidence 3578899999999999999999999999988765
No 52
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=96.88 E-value=0.019 Score=58.73 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=111.2
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
...-+|||||.|.+..-..-.+++|-++...|..=-. .|-+|++|+|... +.+
T Consensus 77 ~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq-~RdkvavI~F~G~-----------~A~--------------- 129 (261)
T COG1240 77 AGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQ-RRDKVAVIAFRGE-----------KAE--------------- 129 (261)
T ss_pred cCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHH-ccceEEEEEecCC-----------cce---------------
Confidence 3456999999998755545577888777777743211 2459999998532 111
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC-------CEEEEEecCCCCCCCCcccCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-------GRITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-------GrI~~F~~g~pt~GpG~l~~~~~ 277 (713)
+++|...+-+.+.+.|+.|+. ...+=+..||..|..++.... -.+++.+.|.||.+.+.=..
T Consensus 130 --lll~pT~sv~~~~~~L~~l~~------GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~--- 198 (261)
T COG1240 130 --LLLPPTSSVELAERALERLPT------GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPK--- 198 (261)
T ss_pred --EEeCCcccHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchH---
Confidence 122222344566777787763 234558999999999997421 47889999998876543110
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 344 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 344 (713)
+.- ...|.++...|+-+=+.-+-..++.+.-...+|..+||..++.+..+.
T Consensus 199 --------------~e~--~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~~~L~~l~~ 249 (261)
T COG1240 199 --------------AET--LEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYYHLDDLSD 249 (261)
T ss_pred --------------HHH--HHHHHHHhhcCCcEEEEecCCccccccHHHHHHHHhCCeEEecccccc
Confidence 011 345566666777666666667777777789999999999999988764
No 53
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.76 E-value=0.038 Score=56.18 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEEEEEcchhHHh------hchHHHHHHHHHHHhhc----CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcC
Q psy16627 128 MYLFLLDVSQIAAQ------SGYLYTVCEVLLNQLKS----MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 197 (713)
Q Consensus 128 ~~vFvID~s~~a~~------sg~l~~~~~sl~~~L~~----lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~ 197 (713)
..+|+||+|.+..+ ...|+.+++.+...+.. .|.+ +||+|.|++.-.-.. .+ -.+..++.++.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D---~vGlilf~t~~~~~~--~~--~~~i~v~~~l~ 75 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKD---LVGVVFYGTEESKNP--VG--YENIYVLLDLD 75 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCC---eEEEEEEcccCCCCc--CC--CCceEEeecCC
Confidence 47899999986531 24688888888888875 4444 899999988643211 01 11223333322
Q ss_pred ccCCCCCCCcceehhhhHHHHHHHHhhCccc-c----cCCCCCCCchHHHHHHHHHhhcC-----CCCEEEEEecCCCCC
Q psy16627 198 DIFLPSPENILVNLSECYDMIVDLLKQLPGK-F----KDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNR 267 (713)
Q Consensus 198 d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~-~----~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~ 267 (713)
. | ..+.|..+++.+... . .........++.||.+|..++.. ..-||++|++|--..
T Consensus 76 ~-----~---------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~ 141 (218)
T cd01458 76 T-----P---------GAERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH 141 (218)
T ss_pred C-----C---------CHHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC
Confidence 1 1 112333444333211 0 11234578899999999999975 235799999976444
Q ss_pred CCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCC
Q psy16627 268 GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 318 (713)
Q Consensus 268 GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~ 318 (713)
|... ....-...+|.++.+.||.+.+|.+..+
T Consensus 142 ~~~~-------------------~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 142 GGDS-------------------IKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CCCH-------------------HHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 3100 0112345788888889999999887544
No 54
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=96.68 E-value=0.043 Score=53.55 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=86.5
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 128 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 128 ~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
.++|+||+|.+.....-++.+++++...++.+.. +. ++|+++|++.. ........+...+.++ .
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d--~~~l~~F~~~~------~~~~~~~~~~~~~~~~-------~ 66 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGV--PHAILGFTTDA------GGRERVRWIKIKDFDE-------S 66 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCC--cEEEEEecCCC------CCccceEEEEecCccc-------c
Confidence 4789999998754323688888888777766654 44 89999998863 0000011111111111 0
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSN 283 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~ 283 (713)
. ...+...|..+. ....+.+|.||..|...+.. ....|++++.|.|+.+...-.
T Consensus 67 ~-------~~~~~~~l~~~~------~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~---------- 123 (174)
T cd01454 67 L-------HERARKRLAALS------PGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEG---------- 123 (174)
T ss_pred c-------chhHHHHHHccC------CCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCc----------
Confidence 0 012233344442 23358899999999998863 346688899999887642110
Q ss_pred CCCCCCcchHHHHHHH---HHHHhhCCeEEEEEEecCCc
Q psy16627 284 DDPPHMNPATDFYKKI---ALECTSFYIAVDLFILNSQY 319 (713)
Q Consensus 284 ~~~~~~~~a~~fY~~L---a~~~~~~~isvDlf~~~~~~ 319 (713)
.....++. +.++.+.||.+..+.+..+.
T Consensus 124 --------~~~~~~~~~~~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 124 --------NVFATEDALRAVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred --------chhHHHHHHHHHHHHHhCCcEEEEEEecCcc
Confidence 00011223 77788889988877765553
No 55
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=96.56 E-value=0.047 Score=54.24 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=103.1
Q ss_pred EEEcchhHHhh----chHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCC
Q psy16627 132 LLDVSQIAAQS----GYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 206 (713)
Q Consensus 132 vID~s~~a~~s----g~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~ 206 (713)
|||.|....+. ..+.++++.+..-++. +..|+-..+|+|+..+.+- ..++++. +
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a-------------~~ls~ls--------g 59 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRA-------------ERLSELS--------G 59 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeeccee-------------EEeeecC--------C
Confidence 58888765543 2466666666666643 3446556899998754321 1111111 0
Q ss_pred cceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCC-EEEEEecCCCCCCCCcccCCCCCCCCC
Q psy16627 207 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGG-RITIFQTCLPNRGPGALQSRENPNQRS 282 (713)
Q Consensus 207 ~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GG-rI~~F~~g~pt~GpG~l~~~~~~~~~s 282 (713)
+. ......|.++. .........+-.||+.|...|+. .|. +|+++.++.-|.-||-+
T Consensus 60 ---n~----~~h~~~L~~~~---~~~~~G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di---------- 119 (193)
T PF04056_consen 60 ---NP----QEHIEALKKLR---KLEPSGEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDI---------- 119 (193)
T ss_pred ---CH----HHHHHHHHHhc---cCCCCCChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhH----------
Confidence 11 11223333332 22445667899999999999985 333 66676777777766643
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhh
Q psy16627 283 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL 361 (713)
Q Consensus 283 ~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l 361 (713)
.+..+.+.+.+|-|++..++.+ +.-.+.+|+.|||..... .+...|..-|....
T Consensus 120 --------------~~ti~~l~~~~IrvsvI~laaE---v~I~k~i~~~T~G~y~V~--------lde~H~~~lL~~~~ 173 (193)
T PF04056_consen 120 --------------HETIESLKKENIRVSVISLAAE---VYICKKICKETGGTYGVI--------LDEDHFKELLMEHV 173 (193)
T ss_pred --------------HHHHHHHHHcCCEEEEEEEhHH---HHHHHHHHHhhCCEEEEe--------cCHHHHHHHHHhhC
Confidence 3678889999999999998774 577899999999954432 23356666565544
No 56
>KOG2884|consensus
Probab=95.86 E-value=0.2 Score=49.77 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=83.5
Q ss_pred EEEEEEEcchhHHhhc----hHHHHHHHHHHHh-hcCCCCCCceEEEEEEcC-eEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 128 MYLFLLDVSQIAAQSG----YLYTVCEVLLNQL-KSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 128 ~~vFvID~s~~a~~sg----~l~~~~~sl~~~L-~~lp~~~~~~VglITF~~-~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
.-+.|||-|.....-. .|++=++++-... ..+..|+...|||||... .+.+. . -
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vL------------s--T------ 64 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVL------------S--T------ 64 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceee------------e--e------
Confidence 4578899887655322 3555556554433 223333333699999754 33331 1 0
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC---C--CEEEEEecCCCCCCCCcccCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---G--GRITIFQTCLPNRGPGALQSRE 276 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---G--GrI~~F~~g~pt~GpG~l~~~~ 276 (713)
|.. -.-.|...+..++ .....-++.+|++|...|+++ + -||++|.++|-..
T Consensus 65 ~T~---------d~gkils~lh~i~------~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e--------- 120 (259)
T KOG2884|consen 65 LTS---------DRGKILSKLHGIQ------PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEE--------- 120 (259)
T ss_pred ccc---------cchHHHHHhcCCC------cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchh---------
Confidence 110 1123334444443 234566999999999999863 3 6999999987322
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccC
Q psy16627 277 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321 (713)
Q Consensus 277 ~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~ 321 (713)
..+-.-++|+++.+++++|||..+.-...+
T Consensus 121 ---------------~ekeLv~~akrlkk~~Vaidii~FGE~~~~ 150 (259)
T KOG2884|consen 121 ---------------SEKELVKLAKRLKKNKVAIDIINFGEAENN 150 (259)
T ss_pred ---------------hHHHHHHHHHHHHhcCeeEEEEEecccccc
Confidence 122345799999999999999998765544
No 57
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=95.46 E-value=0.42 Score=45.27 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=75.4
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCc
Q psy16627 129 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 207 (713)
Q Consensus 129 ~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~ 207 (713)
++|+||+|.+... .-++..+..+...+..+.. +. +|++|+|++..+.+.+ +....
T Consensus 3 v~illD~SgSM~~-~k~~~a~~~~~~l~~~~~~~~~--~v~li~F~~~~~~~~~--------------------~~~~~- 58 (152)
T cd01462 3 VILLVDQSGSMYG-APEEVAKAVALALLRIALAENR--DTYLILFDSEFQTKIV--------------------DKTDD- 58 (152)
T ss_pred EEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHcCC--cEEEEEeCCCceEEec--------------------CCccc-
Confidence 6899999986432 2244555555555555442 44 8999999887322111 10011
Q ss_pred ceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCCC
Q psy16627 208 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSND 284 (713)
Q Consensus 208 l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~ 284 (713)
+..+++.|... .....+.++.||..|...+.. ..+.|++++.|..+..+
T Consensus 59 ----------~~~~~~~l~~~---~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~--------------- 110 (152)
T cd01462 59 ----------LEEPVEFLSGV---QLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGVS--------------- 110 (152)
T ss_pred ----------HHHHHHHHhcC---CCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---------------
Confidence 12223333221 124668999999999999875 24689999888521100
Q ss_pred CCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCC
Q psy16627 285 DPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 318 (713)
Q Consensus 285 ~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~ 318 (713)
.+.. +.+......++.|..+.++.+
T Consensus 111 --------~~~~-~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 111 --------DELL-REVELKRSRVARFVALALGDH 135 (152)
T ss_pred --------HHHH-HHHHHHHhcCcEEEEEEecCC
Confidence 1222 334444556788999988654
No 58
>KOG0443|consensus
Probab=95.03 E-value=0.056 Score=62.86 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=40.9
Q ss_pred hhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHH
Q psy16627 563 SIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAIC 627 (713)
Q Consensus 563 ~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~ 627 (713)
-..|+||.-+.- .+....+ ++ ...+-+.|..|.||||||+..||||||+.++++-.
T Consensus 617 ~~~PrLF~Cs~~--~g~f~~~--EI-----~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK 672 (827)
T KOG0443|consen 617 ERDPRLFSCSNK--TGSFVVE--EI-----YNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEK 672 (827)
T ss_pred CCCCcEEEEEec--CCcEEEE--Ee-----cCcchhhccccceEEEecCceEEEEecCCCChhHH
Confidence 347999988842 1221111 11 23677899999999999999999999999988764
No 59
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=1.7 Score=42.30 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=85.9
Q ss_pred CcEEEEEEEcchhHHhhc----hHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccC
Q psy16627 126 PAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 200 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg----~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f 200 (713)
+-+-|.+||-|..+.... .+++=++++...++. ..+++...||||+-.. .+|+.+.
T Consensus 3 lEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~-----------a~p~vls-------- 63 (243)
T COG5148 3 LEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQ-----------AQPNVLS-------- 63 (243)
T ss_pred cceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeeccc-----------CCcchhc--------
Confidence 345788999998766433 456777777776643 4444444799987421 2344322
Q ss_pred CCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCC
Q psy16627 201 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 201 ~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~F~~g~pt~GpG~l~~~ 275 (713)
....-+..|...|..++ -+.+--++.+|++|..+|++ .| -||++|.++|...
T Consensus 64 ---------T~T~~~gkilt~lhd~~------~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~e-------- 120 (243)
T COG5148 64 ---------TPTKQRGKILTFLHDIR------LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQE-------- 120 (243)
T ss_pred ---------cchhhhhHHHHHhcccc------ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccc--------
Confidence 11112344556666654 13445589999999999985 34 6999999987322
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEec
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILN 316 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~ 316 (713)
+.+-.-.+|+++.++|++||+.-+.
T Consensus 121 ----------------sedeLirlak~lkknnVAidii~fG 145 (243)
T COG5148 121 ----------------SEDELIRLAKQLKKNNVAIDIIFFG 145 (243)
T ss_pred ----------------cHHHHHHHHHHHHhcCeeEEEEehh
Confidence 1123347999999999999998763
No 60
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=93.40 E-value=1.5 Score=51.37 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=84.4
Q ss_pred cEEEEEEEcchhHHh-------hchHHHHHHHHHHHhh-cCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCc
Q psy16627 127 AMYLFLLDVSQIAAQ-------SGYLYTVCEVLLNQLK-SMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 198 (713)
Q Consensus 127 p~~vFvID~s~~a~~-------sg~l~~~~~sl~~~L~-~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d 198 (713)
=+.||+||+|....+ ..-+..+.+++.+.++ .+--+++..||++.|++.=+ .+...-+..+|+.+|+.
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t----~n~~~~~~i~v~~~L~~ 86 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKD----KNSVNFKNIYVLQELDN 86 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCC----CCccCCCceEEEeeCCC
Confidence 468999999987442 1124445555555553 33334455999999987633 11211234456666653
Q ss_pred cCCCCCCCcceehhhhHHHHHHHHhh-Ccccc--cCCCCCCCchHHHHHHHHHhhcC----CC-CEEEEEecCCCCCCCC
Q psy16627 199 IFLPSPENILVNLSECYDMIVDLLKQ-LPGKF--KDSLDSGSALGPALQAAFKLLQP----TG-GRITIFQTCLPNRGPG 270 (713)
Q Consensus 199 ~f~P~~~~~l~~l~e~~~~i~~lL~~-L~~~~--~~~~~~~~~~G~AL~~A~~ll~~----~G-GrI~~F~~g~pt~GpG 270 (713)
+ .. . .-..|.++.+. -...| .-+......+..||.+|..++.. .| -||++||+--.-.|..
T Consensus 87 p---~a-~-------~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~ 155 (584)
T TIGR00578 87 P---GA-K-------RILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGND 155 (584)
T ss_pred C---CH-H-------HHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCc
Confidence 2 11 1 11122333322 11111 01122335899999999999974 23 4799999643222110
Q ss_pred cccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEec
Q psy16627 271 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILN 316 (713)
Q Consensus 271 ~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~ 316 (713)
. ..... =...|.++...||.+++|..+
T Consensus 156 ~---------------~~~~~----a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 156 S---------------AKASR----ARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred h---------------hHHHH----HHHHHHHHHhcCeEEEEEecC
Confidence 0 00000 123578888999999999764
No 61
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=93.22 E-value=2.1 Score=44.97 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=83.5
Q ss_pred CCcEEEEEEEcchhHHhhc----hHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccC
Q psy16627 125 QPAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 200 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg----~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f 200 (713)
...-++++||.|.+..++. -++ .+..|..+|+.++.+ +||++.|+..+.+ +
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le~g---~vgVv~Fg~~~~~--------------v------- 113 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLEVG---QLGVCSFGEDVQI--------------L------- 113 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCcCC---cEEEEEeCCCceE--------------e-------
Confidence 4788999999998754432 234 455677778888776 7999999986532 1
Q ss_pred CCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC-----CC---EEE-EEecCCCCCCCCc
Q psy16627 201 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GG---RIT-IFQTCLPNRGPGA 271 (713)
Q Consensus 201 ~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GG---rI~-~F~~g~pt~GpG~ 271 (713)
+|+-+.+ . . ...++.+... .-...++..|.||..|..+++.. +| +++ +.+.|-|..-.|.
T Consensus 114 ~Plt~d~----~-~----~a~~~~l~~~--~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~ 182 (266)
T cd01460 114 HPFDEQF----S-S----QSGPRILNQF--TFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGA 182 (266)
T ss_pred CCCCCCc----h-h----hHHHHHhCcc--cCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccH
Confidence 1211111 0 1 1222222210 11234467999999999988643 32 444 4444432110000
Q ss_pred ccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCC--ccCchhhcccccCCC
Q psy16627 272 LQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ--YVDLATLSGVSKFSS 333 (713)
Q Consensus 272 l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~--~~~l~~l~~l~~~TG 333 (713)
-+.++.+|.++||.+-....=.. .-.+..|+.....++
T Consensus 183 ------------------------~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~ 222 (266)
T cd01460 183 ------------------------QKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKND 222 (266)
T ss_pred ------------------------HHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCC
Confidence 03457888899988777766332 234555554443333
No 62
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=92.90 E-value=0.62 Score=46.54 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=80.8
Q ss_pred EEEEEEEcchhHHhh----c--hHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 128 MYLFLLDVSQIAAQS----G--YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 128 ~~vFvID~s~~a~~s----g--~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
-++|+||+|.+.... + -++.+++++...+..+.......+++++|++..+-+ .
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~---------------------~ 62 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY---------------------D 62 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc---------------------C
Confidence 488999999875421 1 356777777777666543222369988886543110 1
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH-hhcC--C------CCEEEEEecCCCCCCCCcc
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP--T------GGRITIFQTCLPNRGPGAL 272 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~--~------GGrI~~F~~g~pt~GpG~l 272 (713)
|. . +..+..+++.+. ....+.++.||..|+. +++. . +.-|++++.|.++- ...
T Consensus 63 ~~--------~--~~~v~~~~~~~~------p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d-~~~- 124 (199)
T cd01457 63 NV--------N--SSKVDQLFAENS------PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD-KDA- 124 (199)
T ss_pred Cc--------C--HHHHHHHHhcCC------CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc-HHH-
Confidence 11 1 344555555442 1245789999998874 3332 1 35677788887652 111
Q ss_pred cCCCCCCCCCCCCCCCCcchHHHHHHH---HHHHh-hCCeEEEEEEecCCccCchhhcccccC
Q psy16627 273 QSRENPNQRSNDDPPHMNPATDFYKKI---ALECT-SFYIAVDLFILNSQYVDLATLSGVSKF 331 (713)
Q Consensus 273 ~~~~~~~~~s~~~~~~~~~a~~fY~~L---a~~~~-~~~isvDlf~~~~~~~~l~~l~~l~~~ 331 (713)
..+.+ +.++. ..++++.+.....+.-+...|..|...
T Consensus 125 ----------------------~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~ 165 (199)
T cd01457 125 ----------------------VERVIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQ 165 (199)
T ss_pred ----------------------HHHHHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHH
Confidence 11111 11111 147888888887766565555555543
No 63
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=91.87 E-value=0.24 Score=48.30 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=66.3
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCC----CceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDR----RTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~----~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
-|+ +|++|+|.+.+. .-++++...|++.++.|..++ +..+++||||+.+++|.- ..|++. |-
T Consensus 4 lP~-~lllDtSgSM~G-e~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p-----------f~~~~n-F~ 69 (207)
T COG4245 4 LPC-YLLLDTSGSMIG-EPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP-----------FTDAAN-FN 69 (207)
T ss_pred CCE-EEEEecCccccc-ccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec-----------hhhHhh-cC
Confidence 354 478999987553 347888899999998887763 569999999997776531 112222 22
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC------C------CEEEEEecCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT------G------GRITIFQTCLP 265 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~------G------GrI~~F~~g~p 265 (713)
|.+ | ....++.+|+||+.|..+.+.. . -=|++.+.|-|
T Consensus 70 ~p~--------------------L------~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~P 119 (207)
T COG4245 70 PPI--------------------L------TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEP 119 (207)
T ss_pred CCc--------------------e------ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCc
Confidence 210 0 1236788999999999999741 1 14666667665
No 64
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.68 E-value=7.1 Score=41.25 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCCchHHHHHHHHHhhcC----------CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q psy16627 235 SGSALGPALQAAFKLLQP----------TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECT 304 (713)
Q Consensus 235 ~~~~~G~AL~~A~~ll~~----------~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~ 304 (713)
..+.+..||+.|+..+.. ..+||+++..++ +...+ -..+ -+....|.
T Consensus 117 ~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-----------~~~~q-----------Yi~~-mn~Ifaaq 173 (279)
T TIGR00627 117 SRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-----------DMALQ-----------YIPL-MNCIFSAQ 173 (279)
T ss_pred ccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-----------CchHH-----------HHHH-HHHHHHHH
Confidence 456788899998887732 247999998753 11111 0112 36778899
Q ss_pred hCCeEEEEEEecCCccCchhhcccccCCCceEEEe
Q psy16627 305 SFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 339 (713)
Q Consensus 305 ~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y 339 (713)
+.+|.||++..+.+ -+..-++.+|+.|||.-...
T Consensus 174 k~~I~Idv~~L~~e-~~~~~lqQa~~~TgG~Y~~~ 207 (279)
T TIGR00627 174 KQNIPIDVVSIGGD-FTSGFLQQAADITGGSYLHV 207 (279)
T ss_pred HcCceEEEEEeCCc-cccHHHHHHHHHhCCEEecc
Confidence 99999999998654 45788999999999954433
No 65
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=91.26 E-value=12 Score=39.49 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=56.5
Q ss_pred CchHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhh
Q psy16627 237 SALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTS 305 (713)
Q Consensus 237 ~~~G~AL~~A~~ll~~-----------~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~ 305 (713)
+.+..||+.|+-.+.. ..+||+++.++-+.. +. +|. =+-+..-.|.+
T Consensus 116 s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~----------~~-------QYi-----~~MN~iFaAqk 173 (276)
T PF03850_consen 116 SLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDS----------SS-------QYI-----PLMNCIFAAQK 173 (276)
T ss_pred hhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCc----------cH-------HHH-----HHHHHHHHHhc
Confidence 7888899988887642 236999964432111 10 111 12345667889
Q ss_pred CCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCC
Q psy16627 306 FYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 343 (713)
Q Consensus 306 ~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~ 343 (713)
++|.||++.... .+-.-|...+..|||.-...+...
T Consensus 174 ~~v~IDv~~L~~--~~s~fLqQa~d~T~G~y~~~~~~~ 209 (276)
T PF03850_consen 174 QKVPIDVCKLGG--KDSTFLQQASDITGGIYLKVSKPE 209 (276)
T ss_pred CCceeEEEEecC--CchHHHHHHHHHhCceeeccCccc
Confidence 999999999876 455678899999999888776533
No 66
>KOG0443|consensus
Probab=87.36 E-value=2.9 Score=49.18 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=38.5
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCC-ceEEEEecCCCChhH
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMP-DLIIILVRHGTSPAI 626 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g-~~i~i~vG~~v~~~~ 626 (713)
..+||.+++- .++..... +... +|+.+-|+.+.+|+||+| ..||||+|+.++.+-
T Consensus 254 ~~kLYkVsd~--~g~l~v~~--va~~---~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~E 309 (827)
T KOG0443|consen 254 AAKLYKVSDA--SGGLKVPV--VADG---PLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDE 309 (827)
T ss_pred ccEEEEEecc--CCCccccc--cccc---hhhHHhhccCCeEEEecCCceEEEEeCCCCCHHH
Confidence 4689999842 12221110 1111 178888999999999999 999999999988654
No 67
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=87.11 E-value=2.2 Score=43.40 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=73.1
Q ss_pred EEEEEEEcchhHHhh-----chHHHHHHHHHHHhhc-CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 128 MYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 128 ~~vFvID~s~~a~~s-----g~l~~~~~sl~~~L~~-lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
+.+|+||++.+..+. ..|+.+++++...+.. +-......||+|.|++.-.=-. .....-....++.+++.
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~-~~~~~~~~i~~l~~l~~--- 76 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNP-DEDSGYENIFVLQPLDP--- 76 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST--TTT-STTEEEEEECC----
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCc-ccccCCCceEEeecCCc---
Confidence 468999999764421 2456666666665532 2112224899999987633100 00111122233333221
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcc----cccCCCCCCCchHHHHHHHHHhhcC-CC------CEEEEEecCCCCCCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPG----KFKDSLDSGSALGPALQAAFKLLQP-TG------GRITIFQTCLPNRGPG 270 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~----~~~~~~~~~~~~G~AL~~A~~ll~~-~G------GrI~~F~~g~pt~GpG 270 (713)
| .-+.|..+.+.+.. .-..+......+..||.+|..++.. ++ -||++|+..--..+
T Consensus 77 ~-----------~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~-- 143 (224)
T PF03731_consen 77 P-----------SAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHE-- 143 (224)
T ss_dssp ------------BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT--
T ss_pred c-----------CHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCC--
Confidence 1 12334444333332 0012334456799999999998874 12 48888886431111
Q ss_pred cccCCCCCCCCCCCCCCCCcchHHHHHH-HHHHHhhCCeEEEEEEe
Q psy16627 271 ALQSRENPNQRSNDDPPHMNPATDFYKK-IALECTSFYIAVDLFIL 315 (713)
Q Consensus 271 ~l~~~~~~~~~s~~~~~~~~~a~~fY~~-La~~~~~~~isvDlf~~ 315 (713)
..+ .-..-.++ .+.++...||.+++|..
T Consensus 144 ---~~~--------------~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 144 ---DDD--------------ELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp ----CC--------------CHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred ---CHH--------------HHHHHHHhhccccchhcCcceeEeec
Confidence 000 00011111 26778899999999987
No 68
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=86.88 E-value=35 Score=33.99 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=61.1
Q ss_pred HHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhc-C--CCC-EEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCcc
Q psy16627 216 DMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ-P--TGG-RITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNP 291 (713)
Q Consensus 216 ~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~-~--~GG-rI~~F~~g~pt~GpG~l~~~~~~~~~s~~~~~~~~~ 291 (713)
+.+..+|++++--+.. ..|..||..|++-|+ . ... -|++++.|--|.| .+. |
T Consensus 75 ~~l~~~l~~~q~g~ag-----~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~--~i~-----------------P 130 (191)
T cd01455 75 ETLKMMHAHSQFCWSG-----DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERY--GIQ-----------------P 130 (191)
T ss_pred HHHHHHHHhcccCccC-----ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCC--CCC-----------------h
Confidence 5777888887643322 223389999998885 3 234 4556666543321 121 1
Q ss_pred hHHHHHHH-HHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCC
Q psy16627 292 ATDFYKKI-ALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 341 (713)
Q Consensus 292 a~~fY~~L-a~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~ 341 (713)
.++ |..+.+.||-|..+.... .|-..+..+++.|||.-|...+
T Consensus 131 -----~~aAa~lA~~~gV~iytIgiG~--~d~~~l~~iA~~tgG~~F~A~d 174 (191)
T cd01455 131 -----KKLADALAREPNVNAFVIFIGS--LSDEADQLQRELPAGKAFVCMD 174 (191)
T ss_pred -----HHHHHHHHHhCCCEEEEEEecC--CCHHHHHHHHhCCCCcEEEeCC
Confidence 344 466677888888777754 2567789999999999988744
No 69
>KOG0444|consensus
Probab=85.98 E-value=1.3 Score=50.84 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=26.8
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCC
Q psy16627 593 LQLSAERLQATGTYLLNMPDLIIILVRHG 621 (713)
Q Consensus 593 l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~ 621 (713)
++|+..||+|.-+||||.|.+||||-|..
T Consensus 639 Vpl~~tSLDPRf~FlLD~G~~IyiW~G~~ 667 (1255)
T KOG0444|consen 639 VPLSVTSLDPRFCFLLDAGETIYIWSGYK 667 (1255)
T ss_pred cCccccccCcceEEEEeCCceEEEEeccc
Confidence 55899999999999999999999999964
No 70
>KOG2807|consensus
Probab=78.46 E-value=54 Score=35.03 Aligned_cols=167 Identities=19% Similarity=0.217 Sum_probs=97.3
Q ss_pred CcEEEEEEEcchhHHhhc----hHHHHHHHHHHHhhcC-CCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccC
Q psy16627 126 PAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 200 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg----~l~~~~~sl~~~L~~l-p~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f 200 (713)
-...+.|||+|-...+.. .+..+...+..-+... ..|+-..+|||+--+ +.+ -.+.|+...
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~---------g~A----~~lt~ltgn- 125 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKD---------GKA----DRLTDLTGN- 125 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEec---------chh----hHHHHhcCC-
Confidence 346778999998766653 3444555555555432 335545888887432 211 112222110
Q ss_pred CCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCC----EEEEEecCCCCCCCCcccCCC
Q psy16627 201 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG----RITIFQTCLPNRGPGALQSRE 276 (713)
Q Consensus 201 ~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG----rI~~F~~g~pt~GpG~l~~~~ 276 (713)
| +..|+.|.... .......+-.||+.|...|++.-| .|++..++..|.-||-+
T Consensus 126 ---p----------~~hI~aL~~~~------~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi---- 182 (378)
T KOG2807|consen 126 ---P----------RIHIHALKGLT------ECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDI---- 182 (378)
T ss_pred ---H----------HHHHHHHhccc------ccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccH----
Confidence 1 12233322221 223445678899999999987532 56777788888877754
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHH
Q psy16627 277 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM 356 (713)
Q Consensus 277 ~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~d 356 (713)
|+. -..+.+..|-|.+...+.+ +.--+.+|+.|||.-.. ..|...|+.-
T Consensus 183 -------------------~~t-I~~lk~~kIRvsvIgLsaE---v~icK~l~kaT~G~Y~V--------~lDe~HlkeL 231 (378)
T KOG2807|consen 183 -------------------YET-IDKLKAYKIRVSVIGLSAE---VFICKELCKATGGRYSV--------ALDEGHLKEL 231 (378)
T ss_pred -------------------HHH-HHHHHhhCeEEEEEeechh---HHHHHHHHHhhCCeEEE--------EeCHHHHHHH
Confidence 443 3456778888998887654 35568899999993222 2344566555
Q ss_pred HHHh
Q psy16627 357 FSRY 360 (713)
Q Consensus 357 l~~~ 360 (713)
|...
T Consensus 232 l~e~ 235 (378)
T KOG2807|consen 232 LLEH 235 (378)
T ss_pred HHhc
Confidence 5443
No 71
>KOG0444|consensus
Probab=77.24 E-value=5.9 Score=45.81 Aligned_cols=56 Identities=20% Similarity=0.443 Sum_probs=37.2
Q ss_pred HhhhcceeeecccCCCCCCcccCCCcccc----CccccccccccccCeEEEEeCCceEEEEecCCCCh
Q psy16627 561 MLSIYPELYPIHTLDQDPTIEWNELQVPI----PRILQLSAERLQATGTYLLNMPDLIIILVRHGTSP 624 (713)
Q Consensus 561 ~~~iyP~L~~~~~~~~~~~~~~~~~~~~~----P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~ 624 (713)
..--+|+||.+.- |..+- ++|+ |. ..|-.+-|.+.++|+|||...|+||+|+..+.
T Consensus 729 f~p~qpkLYkV~l-----GmGyL--ELPQvel~P~-~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~R 788 (1255)
T KOG0444|consen 729 FVPEQPKLYKVNL-----GMGYL--ELPQVELLPK-GILKQDLLGSKGVYILDCNSDIFLWIGKKSNR 788 (1255)
T ss_pred cCCCCcceEEEcc-----cccee--ecchhhhchh-hHHHHHhhcCCeEEEEecCCceEEEecccchH
Confidence 3455899998851 11010 1121 22 23556667899999999999999999997654
No 72
>PRK10997 yieM hypothetical protein; Provisional
Probab=76.95 E-value=47 Score=38.01 Aligned_cols=147 Identities=14% Similarity=0.251 Sum_probs=83.3
Q ss_pred cEEEEEEEcchhHHhhchHHHHHHHHHHHhhc--CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 127 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS--MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 127 p~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~--lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
--+++|||+|.+.. |.-+....++..+|-. +.++. ++++|.|++.+.-|.+.. .
T Consensus 324 GpiII~VDtSGSM~--G~ke~~AkalAaAL~~iAl~q~d--r~~li~Fs~~i~~~~l~~--------------------~ 379 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GFNEQCAKAFCLALMRIALAENR--RCYIMLFSTEVVTYELTG--------------------P 379 (487)
T ss_pred CcEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCC--CEEEEEecCCceeeccCC--------------------c
Confidence 34889999998643 4434444455555533 33344 899999999876553321 1
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQR 281 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~ 281 (713)
.+ ...+.++|... ...++.+.+||..|...++. ..|=|++++++....
T Consensus 380 ~g--------l~~ll~fL~~~-------f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~-------------- 430 (487)
T PRK10997 380 DG--------LEQAIRFLSQS-------FRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQR-------------- 430 (487)
T ss_pred cC--------HHHHHHHHHHh-------cCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCC--------------
Confidence 11 11222333322 14467789999989888864 457788887764211
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCC
Q psy16627 282 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 341 (713)
Q Consensus 282 s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~ 341 (713)
...++.+.+..--.+++.-+...+.+.. |-..+..++. +++.|+.
T Consensus 431 ---------~~eel~~~L~~Lk~~~~~rf~~l~i~~~--~~p~l~~ifD----~~W~~d~ 475 (487)
T PRK10997 431 ---------LPDELVAKVKELQRQHQHRFHAVAMSAH--GKPGIMRIFD----HIWRFDT 475 (487)
T ss_pred ---------ChHHHHHHHHHHHHhcCcEEEEEEeCCC--CCchHHHhcC----eeeEecC
Confidence 1123455554433447777777777542 2334445554 3566543
No 73
>KOG2487|consensus
Probab=71.73 E-value=79 Score=33.01 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCC
Q psy16627 297 KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 342 (713)
Q Consensus 297 ~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f 342 (713)
-+.--.|.+++|.||++....+ -..|.+.|..|||.-...++-
T Consensus 186 MNciFaAqKq~I~Idv~~l~~~---s~~LqQa~D~TGG~YL~v~~~ 228 (314)
T KOG2487|consen 186 MNCIFAAQKQNIPIDVVSLGGD---SGFLQQACDITGGDYLHVEKP 228 (314)
T ss_pred HHHHHHHHhcCceeEEEEecCC---chHHHHHHhhcCCeeEecCCc
Confidence 4555678899999999999877 345789999999998887653
No 74
>KOG2353|consensus
Probab=66.88 E-value=2e+02 Score=36.44 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=76.3
Q ss_pred CccccceEEEEeCC---cccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEE
Q psy16627 103 PEIQSATVEYLATA---DYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY 179 (713)
Q Consensus 103 pEL~~~tvEy~~p~---~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y 179 (713)
+|=+..++++--.+ -|+.. ...|--.+|++|+|.+ +..-.+...+..+.++|+.|-++. .|-++||++.++.-
T Consensus 200 ~~~~~~~idl~D~R~r~Wyi~a-At~pKdiviLlD~SgS-m~g~~~~lak~tv~~iLdtLs~~D--fvni~tf~~~~~~v 275 (1104)
T KOG2353|consen 200 DNNTDNSIDLYDCRNRSWYIQA-ATSPKDIVILLDVSGS-MSGLRLDLAKQTVNEILDTLSDND--FVNILTFNSEVNPV 275 (1104)
T ss_pred cCCCCCcceeeecccccccccc-cCCccceEEEEecccc-ccchhhHHHHHHHHHHHHhcccCC--eEEEEeeccccCcc
Confidence 33356666665553 24443 6788999999999975 323357888999999999999988 89999999987742
Q ss_pred EcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC
Q psy16627 180 SLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP 252 (713)
Q Consensus 180 ~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~ 252 (713)
. +...+.+++ ---..++.+.++++.|. .....-+-.|+..|+.+|..
T Consensus 276 ~-------------pc~~~~lvq-------At~~nk~~~~~~i~~l~------~k~~a~~~~~~e~aF~lL~~ 322 (1104)
T KOG2353|consen 276 S-------------PCFNGTLVQ-------ATMRNKKVFKEAIETLD------AKGIANYTAALEYAFSLLRD 322 (1104)
T ss_pred c-------------ccccCceee-------cchHHHHHHHHHHhhhc------cccccchhhhHHHHHHHHHH
Confidence 2 111111121 11234555666666664 12223355677777777753
No 75
>KOG3768|consensus
Probab=64.57 E-value=77 Score=36.56 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=25.0
Q ss_pred cEEEEEEEcchhHHh-----hchHHHHHHHHHHHhhc
Q psy16627 127 AMYLFLLDVSQIAAQ-----SGYLYTVCEVLLNQLKS 158 (713)
Q Consensus 127 p~~vFvID~s~~a~~-----sg~l~~~~~sl~~~L~~ 158 (713)
|+|+|+||||.+.-+ ..||+.+|.++..-+..
T Consensus 2 pi~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~ 38 (888)
T KOG3768|consen 2 PIFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQ 38 (888)
T ss_pred ceEEEEEecccchhhhccCCchhhHHHHHHHHHHHHH
Confidence 789999999976432 35888888888887754
No 76
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=62.96 E-value=14 Score=34.10 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcce
Q psy16627 130 LFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILV 209 (713)
Q Consensus 130 vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~ 209 (713)
+++||+|.+--+ ..|..+...+...+... +. +|-+|.||..|+-.. .+.+.++.
T Consensus 2 ~vaiDtSGSis~-~~l~~fl~ev~~i~~~~--~~--~v~vi~~D~~v~~~~-----------~~~~~~~~---------- 55 (126)
T PF09967_consen 2 VVAIDTSGSISD-EELRRFLSEVAGILRRF--PA--EVHVIQFDAEVQDVQ-----------VFRSLEDE---------- 55 (126)
T ss_pred EEEEECCCCCCH-HHHHHHHHHHHHHHHhC--CC--CEEEEEECCEeeeee-----------EEeccccc----------
Confidence 689999986432 34777777777777666 33 699999999987421 11110000
Q ss_pred ehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCC
Q psy16627 210 NLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPN 266 (713)
Q Consensus 210 ~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt 266 (713)
+..+ .-..+.++++.++++.+.+.- ....-+++|+.|-+.
T Consensus 56 ------------~~~~----~~~GgGGTdf~pvf~~~~~~~-~~~~~vi~fTDg~~~ 95 (126)
T PF09967_consen 56 ------------LRDI----KLKGGGGTDFRPVFEYLEENR-PRPSVVIYFTDGEGW 95 (126)
T ss_pred ------------cccc----ccCCCCCCcchHHHHHHHhcC-CCCCEEEEEeCCCCC
Confidence 0011 123567788888888877654 345668899997653
No 77
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=60.57 E-value=1.5e+02 Score=30.41 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=61.2
Q ss_pred HHHHHhhCcccccCCC-CCCCchHHHHHHHHHhhcC------C-C-----CEEEEEecCCCCCCCCcccCCCCCCCCCCC
Q psy16627 218 IVDLLKQLPGKFKDSL-DSGSALGPALQAAFKLLQP------T-G-----GRITIFQTCLPNRGPGALQSRENPNQRSND 284 (713)
Q Consensus 218 i~~lL~~L~~~~~~~~-~~~~~~G~AL~~A~~ll~~------~-G-----GrI~~F~~g~pt~GpG~l~~~~~~~~~s~~ 284 (713)
+...|++|+ |..+. ....+..-+|..|+.++.. . + -..|+...++|..=|= .+
T Consensus 92 fl~~L~~I~--f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~----~~-------- 157 (226)
T PF11265_consen 92 FLQWLDAIQ--FSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPV----NE-------- 157 (226)
T ss_pred HHHHHHccC--cCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccc----cC--------
Confidence 344556664 22333 3334478888888888873 1 1 1345555556543221 11
Q ss_pred CCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEE
Q psy16627 285 DPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 338 (713)
Q Consensus 285 ~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~ 338 (713)
.. .-..+.++++|..+.+++|.+.+++= --+..+..|-+..+|....
T Consensus 158 ~~---~~~~~~~d~la~~~~~~~I~LSiisP----rklP~l~~Lfeka~~~~~~ 204 (226)
T PF11265_consen 158 CP---QYSGKTCDQLAVLISERNISLSIISP----RKLPSLRSLFEKAKGNPRA 204 (226)
T ss_pred CC---cccCCCHHHHHHHHHhcCceEEEEcC----ccCHHHHHHHHhcCCCccc
Confidence 11 11234678999999999999999863 4567788888888877665
No 78
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=59.84 E-value=1.8 Score=31.58 Aligned_cols=18 Identities=0% Similarity=-0.391 Sum_probs=12.2
Q ss_pred CCCCCCcccccCCCCCCC
Q psy16627 79 NLPEIHEQFLYDRNTEMF 96 (713)
Q Consensus 79 ~~n~~p~~~~~~~~~~~y 96 (713)
+.|.|++|...|+++.+|
T Consensus 23 ~~w~C~~C~~~N~lp~~Y 40 (40)
T PF04810_consen 23 KTWICNFCGTKNPLPPHY 40 (40)
T ss_dssp TEEEETTT--EEE--GGG
T ss_pred CEEECcCCCCcCCCCCCC
Confidence 799999999988887765
No 79
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=50.98 E-value=4.1e+02 Score=29.93 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=140.3
Q ss_pred CcEEEEEEEcchhHHhh-chHHHHHHHHHHHhhcCCCCCCceEEEEEE-cCeEEEEEcCCCCCCCeeee--ecCcCccCC
Q psy16627 126 PAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMI--LTDIDDIFL 201 (713)
Q Consensus 126 pp~~vFvID~s~~a~~s-g~l~~~~~sl~~~L~~lp~~~~~~VglITF-~~~V~~y~l~~~~~~~q~~v--v~dl~d~f~ 201 (713)
|-=..|++|+|.+..+. .-|+.+...|...|..+-.+. ++||=+| |+.|.=|--.. |..+. -.+....-.
T Consensus 99 PvDLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~n~--rlGfGsFVDK~v~P~~~t~----p~~l~~PC~~~~~~c~ 172 (423)
T smart00187 99 PVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNF--RLGFGSFVDKTVSPFVSTR----PEKLENPCPNYNLTCE 172 (423)
T ss_pred ccceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhcccCc--eeeEEEeecCccCCcccCC----HHHhcCCCcCCCCCcC
Confidence 55577999999764431 225556667777777776666 9999888 55554332110 11100 000000111
Q ss_pred C-CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHh--hc-C-CCCEEEEEecCCCC--CCCCcccC
Q psy16627 202 P-SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL--LQ-P-TGGRITIFQTCLPN--RGPGALQS 274 (713)
Q Consensus 202 P-~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l--l~-~-~GGrI~~F~~g~pt--~GpG~l~~ 274 (713)
| ..-+-.+++.+..+.+++.+.+.. ...+...|...+-+-+++|+-- ++ . ..-||++|++-.+- .|-|+|-+
T Consensus 173 p~f~f~~~L~LT~~~~~F~~~V~~~~-iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaG 251 (423)
T smart00187 173 PPYGFKHVLSLTDDTDEFNEEVKKQR-ISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAG 251 (423)
T ss_pred CCcceeeeccCCCCHHHHHHHHhhce-eecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceee
Confidence 1 111224566666555566565542 2234456677788878887532 21 1 22489999988775 58888765
Q ss_pred CCCCCC-CCC-CCCCCCcchH--H--HHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcch
Q psy16627 275 RENPNQ-RSN-DDPPHMNPAT--D--FYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMS 348 (713)
Q Consensus 275 ~~~~~~-~s~-~~~~~~~~a~--~--fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~ 348 (713)
--.|+. .-| ++.-.+..++ + =-..|+..+.+++|.+ ||+.+..+.++. ..|+++-.|..+=-=+-+ +.
T Consensus 252 Iv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~-IFAVT~~~~~~Y--~~Ls~lipgs~vg~Ls~D---Ss 325 (423)
T smart00187 252 IVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINP-IFAVTKKQVSLY--KELSALIPGSSVGVLSED---SS 325 (423)
T ss_pred EecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceE-EEEEcccchhHH--HHHHHhcCcceeeecccC---cc
Confidence 433332 112 1110111111 1 1257888888888854 899988887765 344444444433211111 12
Q ss_pred hHHHHHHHHHHhhccccccceEEEEEe-cCCceEEEEecCccccC--CCceeecCCCCCCeEEEEEEeec
Q psy16627 349 HVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TDLLALPNVNPDAGYGIQISIDE 415 (713)
Q Consensus 349 ~~~~~~~dl~~~l~~~~g~~a~l~Vr~-S~gl~v~~~~G~~~~~~--t~~~~l~~i~~~~s~~~~f~~~~ 415 (713)
..-.|.++-++. +.-..+|+... +.+++++-. ..|-.+. ...-+..++....++.|+.++.-
T Consensus 326 NIv~LI~~aY~~----i~S~V~l~~~~~p~~v~~~y~-s~C~~g~~~~~~~~C~~v~iG~~V~F~v~vta 390 (423)
T smart00187 326 NVVELIKDAYNK----ISSRVELEDNSLPEGVSVTYT-SSCPGGVVGPGTRKCEGVKIGDTVSFEVTVTA 390 (423)
T ss_pred hHHHHHHHHHHh----hceEEEEecCCCCCcEEEEEE-eeCCCCCcccCCcccCCcccCCEEEEEEEEEe
Confidence 234444444433 23344555553 566666522 2332111 11124557777778887777763
No 80
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=48.44 E-value=2.2e+02 Score=28.82 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=43.7
Q ss_pred CCchHHHHHHHHHhhcCC---CCEEEEEecC--CCCCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEE
Q psy16627 236 GSALGPALQAAFKLLQPT---GGRITIFQTC--LPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAV 310 (713)
Q Consensus 236 ~~~~G~AL~~A~~ll~~~---GGrI~~F~~g--~pt~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isv 310 (713)
.++.|.||..|..++... +.|-++=.+| +.|.|+.-+ +..-..+...||+|
T Consensus 94 ~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~------------------------~~ard~~~~~GitI 149 (205)
T PF06707_consen 94 RTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPV------------------------TSARDAAVAAGITI 149 (205)
T ss_pred CchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCcc------------------------HHHHHHHHHCCeEE
Confidence 399999999999999853 5565555554 444443221 12233455689999
Q ss_pred EEEEecCCcc----Cchhhc
Q psy16627 311 DLFILNSQYV----DLATLS 326 (713)
Q Consensus 311 Dlf~~~~~~~----~l~~l~ 326 (713)
+=+++..+.. +|...-
T Consensus 150 NgL~I~~~~~~~~~~L~~yy 169 (205)
T PF06707_consen 150 NGLAILDDDPFGGADLDAYY 169 (205)
T ss_pred eeeEecCCCCCccccHHHHH
Confidence 9998877655 555543
No 81
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=45.41 E-value=67 Score=36.15 Aligned_cols=100 Identities=23% Similarity=0.292 Sum_probs=59.9
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhc--CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS--MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~--lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
+| ++.+||+|.+. .|..+....++..+|-. +-+| +++.++.||+.++=|++....
T Consensus 273 Gp-villlD~SGSM--~G~~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~~el~~k~------------------ 329 (437)
T COG2425 273 GP-VILLLDKSGSM--SGFKEQWAKAVALALMRIALAEN--RDCYVILFDSEVIEYELYEKK------------------ 329 (437)
T ss_pred CC-EEEEEeCCCCc--CCcHHHHHHHHHHHHHHHHHHhc--cceEEEEecccceeeeecCCc------------------
Confidence 55 56799999762 35555555555555522 3334 389999999944333333210
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CCCEEEEEecCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCL 264 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~ 264 (713)
.+ . ..+++.|...+ ..++-+-.||..|+..++. .++.|++.|+|-
T Consensus 330 -~~-------~----~e~i~fL~~~f----~GGTD~~~~l~~al~~~k~~~~~~adiv~ITDg~ 377 (437)
T COG2425 330 -ID-------I----EELIEFLSYVF----GGGTDITKALRSALEDLKSRELFKADIVVITDGE 377 (437)
T ss_pred -cC-------H----HHHHHHHhhhc----CCCCChHHHHHHHHHHhhcccccCCCEEEEeccH
Confidence 01 1 23334443322 3336778888888888874 568999998875
No 82
>PF02905 EBV-NA1: Epstein Barr virus nuclear antigen-1, DNA-binding domain; InterPro: IPR004186 The Epstein-Barr virus (strain GD1) nuclear antigen 1 (EBNA1) binds to and activates DNA replication from the latent origin of replication. The crystal structure of the DNA-binding and dimerization domains were solved [], and it was found that EBNA1 appears to bind DNA via two independent regions, the core and the flanking DNA-binding domains. This DNA-binding domain has a ferredoxin-like fold.; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0006260 DNA replication, 0006275 regulation of DNA replication, 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1B3T_B 1VHI_B.
Probab=45.18 E-value=38 Score=30.99 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEE
Q psy16627 145 LYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVH 177 (713)
Q Consensus 145 l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~ 177 (713)
-+.++++|+.-+..-|. .++++|-+++||+.|-
T Consensus 112 Ae~vkDAi~Dyi~T~P~PT~~~~Vt~~~Fd~~V~ 145 (146)
T PF02905_consen 112 AECVKDAIRDYIMTRPQPTCNTQVTVCSFDDGVM 145 (146)
T ss_dssp HHHHHHHHHHHHCTS-TTGGGEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCCCcceEEEEEeCCCCCc
Confidence 45689999999987765 4678999999998774
No 83
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=41.82 E-value=5.6e+02 Score=28.94 Aligned_cols=266 Identities=14% Similarity=0.189 Sum_probs=128.0
Q ss_pred CcEEEEEEEcchhHHhh-chHHHHHHHHHHHhhcCCCCCCceEEEEEE-cCeEEEEEcCCCCCCCeeeeecCcCccC---
Q psy16627 126 PAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMILTDIDDIF--- 200 (713)
Q Consensus 126 pp~~vFvID~s~~a~~s-g~l~~~~~sl~~~L~~lp~~~~~~VglITF-~~~V~~y~l~~~~~~~q~~vv~dl~d~f--- 200 (713)
|-=..|++|+|.+..+. .-|+.+-..|...|..+-.+. ++||=+| |+.|.=|- ...|. .+..+.
T Consensus 102 PvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~~--~~GfGsfvdK~~~P~~----~~~p~-----~l~~pc~~~ 170 (426)
T PF00362_consen 102 PVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSNF--RLGFGSFVDKPVMPFV----STTPE-----KLKNPCPSK 170 (426)
T ss_dssp -EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SSE--EEEEEEESSSSSTTTS----T-SSH-----CHHSTSCCT
T ss_pred ceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCccc--eEechhhcccccCCcc----cCChh-----hhcCccccc
Confidence 56678999999864431 124444577888888887666 8999888 44332110 00111 111221
Q ss_pred -----CCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH--hhc--CCCCEEEEEecCCC--CCCC
Q psy16627 201 -----LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LLQ--PTGGRITIFQTCLP--NRGP 269 (713)
Q Consensus 201 -----~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll~--~~GGrI~~F~~g~p--t~Gp 269 (713)
-|..-+-.+++.+........+.+.. ...+-..|...+=+-+++|+- .++ ...-||++|++-.+ ..|-
T Consensus 171 ~~~c~~~~~f~~~l~Lt~~~~~F~~~v~~~~-is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agD 249 (426)
T PF00362_consen 171 NPNCQPPFSFRHVLSLTDDITEFNEEVNKQK-ISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGD 249 (426)
T ss_dssp TS--B---SEEEEEEEES-HHHHHHHHHTS---B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTG
T ss_pred CCCCCCCeeeEEeecccchHHHHHHhhhhcc-ccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccc
Confidence 11111224566666666666666542 223345677778778887764 232 22358999988776 3688
Q ss_pred CcccCCCCCCC-CCC-CCCCCCcc----hHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCC-CceEEEeCCC
Q psy16627 270 GALQSRENPNQ-RSN-DDPPHMNP----ATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS-SGCIHHIPLY 342 (713)
Q Consensus 270 G~l~~~~~~~~-~s~-~~~~~~~~----a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~T-GG~v~~y~~f 342 (713)
|++.+--.|+. .-| +....+.. ...-...|+..+.+++|. =||+.+....++. ..|++.- |+.+-...+
T Consensus 250 g~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~-~IFAVt~~~~~~Y--~~L~~~i~~s~vg~L~~- 325 (426)
T PF00362_consen 250 GKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNIN-PIFAVTKDVYSIY--EELSNLIPGSSVGELSS- 325 (426)
T ss_dssp GGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEE-EEEEEEGGGHHHH--HHHHHHSTTEEEEEEST-
T ss_pred cccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCE-EEEEEchhhhhHH--HHHhhcCCCceeccccc-
Confidence 88877654443 122 11112222 223356788888888875 4898888766544 3333333 334434322
Q ss_pred CCCcchhHHHHHHHHHHhhccccccceEEEEEe-cCCceEEEEecCccccC--CCceeecCCCCCCeEEEEEEeec
Q psy16627 343 SGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TDLLALPNVNPDAGYGIQISIDE 415 (713)
Q Consensus 343 ~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~-S~gl~v~~~~G~~~~~~--t~~~~l~~i~~~~s~~~~f~~~~ 415 (713)
+ +...-.+.++-++.+ .-...++... ++++++ .+..+|..+. ...-...++....++.|.+.+.-
T Consensus 326 d---SsNIv~LI~~aY~~i----~s~V~L~~~~~p~~v~v-~y~s~C~~~~~~~~~~~C~~V~iG~~V~F~VtVta 393 (426)
T PF00362_consen 326 D---SSNIVQLIKEAYNKI----SSKVELKHDNAPDGVKV-SYTSNCPNGSTVPGTNECSNVKIGDTVTFNVTVTA 393 (426)
T ss_dssp T---SHTHHHHHHHHHHHH----CTEEEEEECS--TTEEE-EEEEEESSSEEEECCEEECSE-TT-EEEEEEEEEE
T ss_pred C---chhHHHHHHHHHHHH----hheEEEEecCCCCcEEE-EEEEEccCCcccCcCccccCEecCCEEEEEEEEEE
Confidence 1 122334444433333 3334444322 445655 3333443211 11234455667777777766664
No 84
>KOG3355|consensus
Probab=31.31 E-value=47 Score=32.17 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=35.2
Q ss_pred CCCCchH-HhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhccc---CCCCCCCHHHHHHHHHHhC
Q psy16627 646 LPQLETQ-LSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIED---KNAGGMAYYEFLLRIREQV 713 (713)
Q Consensus 646 lp~~d~~-~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED---~~~~~~SY~dfL~~lh~~i 713 (713)
.|...|+ +-..++.||..+..-.|+ +.=+.=+++++++ ++.+...+..|+||+|.+|
T Consensus 88 yP~~PT~eqk~~~~sFi~~~s~~yPC-----------~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~V 148 (177)
T KOG3355|consen 88 YPDRPTPEQKDDMRSFIHLFSKFYPC-----------GECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKV 148 (177)
T ss_pred CCCCCChHHHHHHHHHHHHhhhhcch-----------HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 4445553 345688888877777544 3323333444444 3345678999999999875
No 85
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=27.07 E-value=98 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCCCCchHHHHHHHHHhhcCC---CCEEEEEecCC
Q psy16627 233 LDSGSALGPALQAAFKLLQPT---GGRITIFQTCL 264 (713)
Q Consensus 233 ~~~~~~~G~AL~~A~~ll~~~---GGrI~~F~~g~ 264 (713)
-..++.+|.||..+...+... +.-|+++.+|.
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccc
Confidence 345778899999998888632 46677777763
No 86
>KOG0445|consensus
Probab=25.38 E-value=62 Score=37.86 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=33.3
Q ss_pred ccccccccCeEEEEeCCceEEEEecCCCC-------hhHHhhccCCC
Q psy16627 595 LSAERLQATGTYLLNMPDLIIILVRHGTS-------PAICSGLFGFQ 634 (713)
Q Consensus 595 Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~-------~~~~~~lfg~~ 634 (713)
++.+-|++..+++.|-|..||+|.|+.++ .++-+.+||.+
T Consensus 363 pk~~~l~p~eVLvFDFGSEvYVW~Gk~~~~~~~~~A~~lAk~l~~~d 409 (919)
T KOG0445|consen 363 PKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNFD 409 (919)
T ss_pred ccccccCcceEEEEecCceEEEEcCccCchHHHHHHHHHHHHHhCCC
Confidence 46677899999999999999999999765 46777888843
No 87
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=21.97 E-value=3.4e+02 Score=30.30 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=96.7
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHH---h-hcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQ---L-KSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~---L-~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
-.+.+.+||+|.+.+-.|..--+|+.-.+. + -..|++. +.||+|+..-. .+-++.
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~---l~~i~Fgr~A~------------~v~v~e------ 521 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDA---LQIIAFGRYAR------------TVTAAE------ 521 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcc---eEEEeccchhc------------ccCHHH------
Confidence 456778899999888777555555443322 2 2245564 88888865421 111111
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC---CCEEEEEecCCCCC----CCCcccC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---GGRITIFQTCLPNR----GPGALQS 274 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---GGrI~~F~~g~pt~----GpG~l~~ 274 (713)
|..++.. ...++.+--||..|-.+++.. -..|++.+.|-||. |-|.+..
T Consensus 522 --------------------Lt~l~~v----~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~ 577 (652)
T COG4867 522 --------------------LTGLAGV----YEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVF 577 (652)
T ss_pred --------------------HhcCCCc----cccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEe
Confidence 1222211 223456777888888888743 35889999999974 4454433
Q ss_pred CCCCCCCCCCCCCCCcchHHH--HHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeC
Q psy16627 275 RENPNQRSNDDPPHMNPATDF--YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIP 340 (713)
Q Consensus 275 ~~~~~~~s~~~~~~~~~a~~f--Y~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~ 340 (713)
-+.+. .|-+-| -.++ ..|.+.|+-+.+|....|+-=..-+..+++.++|.++.-+
T Consensus 578 f~yp~----------DP~t~~~Tvr~~-d~~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~pd 634 (652)
T COG4867 578 FDYPP----------DPRTIAHTVRGF-DDMARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVVPD 634 (652)
T ss_pred cCCCC----------ChhHHHHHHHHH-HHHHhccceeeEEeecCCHhHHHHHHHHHHHhCCeEEecC
Confidence 22111 111111 1233 3578899999999999886444557889999999998743
Done!