Query psy16627
Match_columns 713
No_of_seqs 260 out of 741
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:44:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 100.0 5E-149 2E-153 1306.6 67.3 685 26-713 40-749 (751)
2 3efo_B SEC24 related gene fami 100.0 1E-140 5E-145 1239.1 63.6 676 25-713 46-765 (770)
3 3eh2_A Protein transport prote 100.0 3E-140 9E-145 1236.3 63.7 675 26-713 43-761 (766)
4 1pcx_A Protein transport prote 100.0 7E-136 2E-140 1206.9 64.3 685 25-713 62-808 (810)
5 1m2v_B SEC24, protein transpor 100.0 5E-136 2E-140 1212.7 60.2 686 24-713 177-924 (926)
6 1m2o_A SEC23, protein transpor 100.0 1E-123 5E-128 1098.9 51.3 644 26-713 9-763 (768)
7 2nut_A Protein transport prote 100.0 2E-119 6E-124 1062.7 54.0 638 25-712 17-763 (769)
8 4fx5_A VON willebrand factor t 99.2 1.4E-08 4.9E-13 113.3 34.2 345 126-532 77-457 (464)
9 3ibs_A Conserved hypothetical 98.8 3.2E-07 1.1E-11 91.3 19.5 174 123-360 8-212 (218)
10 1ijb_A VON willebrand factor; 98.4 1.6E-05 5.4E-10 78.4 18.0 163 126-344 13-183 (202)
11 1q0p_A Complement factor B; VO 98.3 1.4E-05 4.7E-10 79.4 16.2 175 123-343 12-206 (223)
12 1atz_A VON willebrand factor; 98.3 2.2E-05 7.7E-10 76.2 17.0 158 125-343 4-171 (189)
13 4b4t_W RPN10, 26S proteasome r 98.3 3.5E-06 1.2E-10 86.6 11.3 146 128-334 5-163 (268)
14 1v7p_C Integrin alpha-2; snake 98.2 2.9E-05 9.9E-10 76.2 17.1 161 125-344 5-183 (200)
15 1shu_X Anthrax toxin receptor 98.2 4.6E-05 1.6E-09 73.1 18.2 159 125-343 5-168 (182)
16 1n3y_A Integrin alpha-X; alpha 98.2 1.1E-05 3.6E-10 78.9 13.3 161 125-344 8-181 (198)
17 1mf7_A Integrin alpha M; cell 98.2 1E-05 3.4E-10 79.0 12.4 162 125-344 4-177 (194)
18 2b2x_A Integrin alpha-1; compu 98.2 1.7E-05 5.9E-10 79.2 14.4 161 125-344 21-199 (223)
19 4hqf_A Thrombospondin-related 98.2 2.3E-05 7.8E-10 81.4 14.9 166 125-344 20-197 (281)
20 3n2n_F Anthrax toxin receptor 98.2 4.2E-05 1.4E-09 73.6 15.7 158 125-343 6-171 (185)
21 4hqo_A Sporozoite surface prot 98.1 1.9E-05 6.5E-10 81.4 13.4 166 125-343 17-193 (266)
22 1pt6_A Integrin alpha-1; cell 98.1 3.4E-05 1.2E-09 76.4 14.2 162 124-344 5-184 (213)
23 2odp_A Complement C2; C3/C5 co 98.1 6.3E-05 2.2E-09 84.7 17.8 166 123-342 6-199 (509)
24 2x31_A Magnesium-chelatase 60 98.0 2.6E-07 8.9E-12 89.9 -2.4 177 125-360 4-186 (189)
25 2x5n_A SPRPN10, 26S proteasome 98.0 4.9E-05 1.7E-09 74.5 13.9 142 128-332 4-159 (192)
26 1rrk_A Complement factor B; BB 98.0 0.0001 3.4E-09 82.7 17.5 169 126-343 1-192 (497)
27 1mjn_A Integrin alpha-L; rossm 97.9 0.00033 1.1E-08 67.4 15.7 153 126-344 2-167 (179)
28 1jey_B KU80; double-strand DNA 97.7 9.3E-05 3.2E-09 84.6 9.5 145 127-317 8-169 (565)
29 3hrz_D Complement factor B; se 97.6 0.00037 1.3E-08 82.0 14.6 181 123-343 240-434 (741)
30 3zqk_A VON willebrand factor; 97.6 0.0021 7E-08 62.8 16.8 153 124-344 19-181 (199)
31 2xgg_A Microneme protein 2; A/ 97.6 0.00077 2.6E-08 64.6 13.5 144 125-325 16-168 (178)
32 1kcq_A Gelsolin, brevin, ADF, 97.5 0.00057 1.9E-08 59.9 10.0 88 565-691 2-90 (104)
33 3k6s_A Integrin alpha-X; cell 97.4 0.00043 1.5E-08 84.8 10.9 160 126-344 130-302 (1095)
34 3fg7_A Villin-1; actin binding 97.3 0.00076 2.6E-08 73.4 9.9 109 564-705 281-392 (398)
35 1svq_A Severin; actin-binding; 97.1 0.00095 3.2E-08 59.5 7.0 89 565-691 12-101 (114)
36 2fh1_A Gelsolin; calcium, cont 96.8 0.0026 8.8E-08 67.9 8.4 113 564-708 227-341 (344)
37 1jey_A KU70; double-strand DNA 96.5 0.025 8.4E-07 65.0 15.0 149 127-318 36-208 (609)
38 3fg6_A Adseverin, scinderin; C 96.5 0.0028 9.6E-08 68.3 6.4 54 565-626 269-322 (371)
39 1d0n_A Horse plasma gelsolin; 96.0 0.014 4.8E-07 68.4 9.0 98 562-691 610-707 (729)
40 1j72_A Macrophage capping prot 95.6 0.03 1E-06 59.7 9.2 88 564-682 246-335 (347)
41 2ww8_A RRGA, cell WALL surface 95.5 0.037 1.3E-06 66.1 10.4 146 124-269 222-394 (893)
42 1yvr_A RO autoantigen, 60-kDa 94.2 0.099 3.4E-06 59.1 8.8 108 123-268 365-475 (538)
43 3fcs_B Integrin beta-3; beta p 94.0 2.3 8E-05 49.1 19.9 266 125-415 110-403 (690)
44 1j72_A Macrophage capping prot 93.7 0.2 6.8E-06 53.2 9.6 88 565-691 135-223 (347)
45 1d0n_A Horse plasma gelsolin; 92.2 0.34 1.2E-05 56.7 9.4 88 565-691 133-221 (729)
46 3t3p_B Integrin beta-3; integr 91.4 19 0.00066 39.4 26.9 268 125-415 110-403 (472)
47 3rag_A Uncharacterized protein 91.2 0.26 8.8E-06 49.4 6.0 49 125-175 133-182 (242)
48 3fg6_A Adseverin, scinderin; C 90.7 0.78 2.7E-05 49.1 9.6 52 565-625 165-217 (371)
49 3vi3_B Integrin beta-1; beta p 90.6 17 0.0006 39.4 20.0 267 125-415 121-412 (454)
50 3k6s_B Integrin beta-2; cell r 89.4 1.6 5.6E-05 50.4 11.4 202 124-339 102-323 (687)
51 2fh1_A Gelsolin; calcium, cont 89.3 0.78 2.7E-05 48.6 8.2 53 565-626 124-176 (344)
52 2yrc_A Protein transport prote 88.4 0.08 2.7E-06 41.0 -0.2 19 79-97 32-50 (59)
53 3v4v_B Integrin beta-7; cell a 88.2 35 0.0012 37.6 24.1 274 124-415 130-426 (503)
54 2nvo_A RO sixty-related protei 82.9 2.8 9.7E-05 47.0 8.8 108 123-268 359-471 (535)
55 2iue_A Pactolus I-domain; memb 77.0 9.9 0.00034 37.1 9.4 115 126-274 3-126 (212)
56 3fg7_A Villin-1; actin binding 68.1 1.1 3.6E-05 48.5 0.0 33 593-625 197-229 (398)
57 3rag_A Uncharacterized protein 64.4 16 0.00056 36.3 7.8 64 253-341 9-76 (242)
58 1b3t_A Protein (nuclear protei 40.1 37 0.0013 29.9 4.9 33 145-177 112-145 (147)
59 3eh1_A Protein transport prote 34.8 19 0.00066 41.9 3.2 31 48-78 1-31 (751)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=4.6e-149 Score=1306.55 Aligned_cols=685 Identities=49% Similarity=0.819 Sum_probs=643.6
Q ss_pred hHhHhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCcccccCC
Q psy16627 26 QQQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRDILPATKVEPPPIRLPQ--------------NLPEIHEQFLYDR 91 (713)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~p~~~~~~~--------------~~n~~p~~~~~~~ 91 (713)
..|.|.|++..|.+.++.+.+..|.|.- +-|+++.+.+|.+.+.+| +||++ +.|.||+|++.|.
T Consensus 40 p~~~R~T~n~iP~t~~~~~~~~lPlg~~-i~Pl~~~~~~P~v~~~~p-~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N~ 117 (751)
T 3eh1_A 40 PDSFRCTLTNIPQTQALLNKAKLPLGLL-LHPFRDLTQLPVITSNTI-VRCRSCRTYINPFVSFIDQRRWKCNLCYRVND 117 (751)
T ss_dssp TTTEEESBSSEESSHHHHHHHCCCCEEE-ECTTCCCSCCCEECCSCC-CBCTTTCCBCCTTCEESSSSEEECTTTCCEEE
T ss_pred CCeEEeecccCCCCHHHHHhCCCCeEEE-EecCCcCCCCCccCCCCC-CcccCccCEeCCceEEecCCEEEcccccCCCC
Confidence 4577899999999999998899998872 237777777888777754 47663 7899999999998
Q ss_pred CCCCC---------CCCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC
Q psy16627 92 NTEMF---------GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD 162 (713)
Q Consensus 92 ~~~~y---------~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~ 162 (713)
+|.+| +|.++||||+++||||++|++|+.| ||+||+|+||||||.+++++|+++++|++|+++|+.||++
T Consensus 118 ~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r-~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~ 196 (751)
T 3eh1_A 118 VPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR-PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGD 196 (751)
T ss_dssp CCGGGC---------CGGGSHHHHCSEEEEEECGGGCSS-SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCC
T ss_pred CCHHHhcccccccccCcccCchhccceEEEEcChhhhcC-CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 87766 3678999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHH
Q psy16627 163 RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPA 242 (713)
Q Consensus 163 ~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~A 242 (713)
+|++|||||||++||||+++++.+++||++++|++|+|+|.|++||+|++||++.|+++|++|+.++++++++.+|+|+|
T Consensus 197 ~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~A 276 (751)
T 3eh1_A 197 SRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPA 276 (751)
T ss_dssp TTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHH
T ss_pred cCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccC
Q psy16627 243 LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321 (713)
Q Consensus 243 L~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~-~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~ 321 (713)
|++|.++|+.+||||++|++|+||.|||+|+.|++++.++| |++++++++++||++||++|+++||+||+|+++.+|+|
T Consensus 277 L~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~d 356 (751)
T 3eh1_A 277 LQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSD 356 (751)
T ss_dssp HHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCC
T ss_pred HHHHHHHhhcCCCEEEEEecCCCCCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccC
Confidence 99999999999999999999999999999999998886665 56789999999999999999999999999999999999
Q ss_pred chhhcccccCCCceEEEeCCCCC-CcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCccccCCCceeecC
Q psy16627 322 LATLSGVSKFSSGCIHHIPLYSG-KNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPN 400 (713)
Q Consensus 322 l~~l~~l~~~TGG~v~~y~~f~~-~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~~~t~~~~l~~ 400 (713)
++||+.+++.|||.+++|++|+. +++.+.++|.+||.+.+++++||+|+||||||+||+|+++||||+.++++.|++++
T Consensus 357 latl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~ 436 (751)
T 3eh1_A 357 LASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLAN 436 (751)
T ss_dssp HHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEE
T ss_pred hHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEecc
Confidence 99999999999999999999994 45567789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHHhcC
Q psy16627 401 VNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQH 480 (713)
Q Consensus 401 i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~llar~av~~~~~~ 480 (713)
+++|+|++|+|++++++.+.+.+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|||+|+++++++
T Consensus 437 i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~ 516 (751)
T 3eh1_A 437 INPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSS 516 (751)
T ss_dssp ECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhh
Q psy16627 481 SLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSL 560 (713)
Q Consensus 481 ~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~ 560 (713)
++.|+|+||+++++++|++||+++..+.+++|+||++||+||+||+||+||++|+.+.++++|||+|+|+.++++++.++
T Consensus 517 ~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~ 596 (751)
T 3eh1_A 517 SLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHL 596 (751)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999997654445579999999999999999999999998778999999999999999999999
Q ss_pred HhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCC
Q psy16627 561 MLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMP 640 (713)
Q Consensus 561 ~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~ 640 (713)
+.||||+||++|++.++++..++++.+++|+.++||+++|++|||||||+|++++||+|++++++++++|||++++.+++
T Consensus 597 ~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~ 676 (751)
T 3eh1_A 597 MKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIP 676 (751)
T ss_dssp HHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCC
T ss_pred HhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcC
Confidence 99999999999999888776666666789999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhcccCCCCCCCHHHHHHHHHHhC
Q psy16627 641 ETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713 (713)
Q Consensus 641 ~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 713 (713)
..+.+||++|++.|+++|++|+++|+.|++.+.++|++++++.+..|.++||||++++++||+|||+|||+||
T Consensus 677 ~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i 749 (751)
T 3eh1_A 677 QKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 749 (751)
T ss_dssp SSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999888889999999999999999999999999999999999999986
No 2
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=1.5e-140 Score=1239.14 Aligned_cols=676 Identities=26% Similarity=0.478 Sum_probs=626.4
Q ss_pred hhHhHhhhhhcccccccccccccccccc--cccccCCCCCC-CCCC---CCCCCCCCCCC---------------CCCCC
Q psy16627 25 QQQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTRDI-LPAT---KVEPPPIRLPQ---------------NLPEI 83 (713)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~p~~---~~~p~~~~~~~---------------~~n~~ 83 (713)
...|.|.|++..|.+.++...+..|.|. +|+.++.+.+. +|.+ .+.|+ ||++ +.|.|
T Consensus 46 ~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pv--RC~rCrayiNPf~~f~~~g~~w~C 123 (770)
T 3efo_B 46 SPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPV--RCNRCKAYMCPFMQFIEGGRRYQC 123 (770)
T ss_dssp CTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSC--BCTTTCCBSCTTCEEEGGGTEEEC
T ss_pred CCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCC--ccCCCCCCcCCceEEecCCCEEEe
Confidence 4478899999999999999999999998 56555544322 3443 56677 7663 79999
Q ss_pred CcccccCCCCCCCC----------CCCCCCccccceEEEEeCCccc--CCCCCCCcEEEEEEEcchhHHhhchHHHHHHH
Q psy16627 84 HEQFLYDRNTEMFG----------DPYRRPEIQSATVEYLATADYT--VRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEV 151 (713)
Q Consensus 84 p~~~~~~~~~~~y~----------d~~~rpEL~~~tvEy~~p~~y~--~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~s 151 (713)
|+|...|.+|.+|. |.++||||+++||||++|.||+ .| +|+||+|+||||||.+++++|+++++|++
T Consensus 124 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~-~p~pp~y~FvIDvs~~av~sg~l~~~~~s 202 (770)
T 3efo_B 124 GFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSK-PPNPPAFIFMIDVSYSNIKNGLVKLICEE 202 (770)
T ss_dssp TTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGS-CCCCCEEEEEEECSHHHHHTTHHHHHHHH
T ss_pred ccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCC-CCCCcEEEEEEEcchhhccchHHHHHHHH
Confidence 99999998887763 5679999999999999999998 46 89999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-----CceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCc
Q psy16627 152 LLNQLKSMPGDR-----RTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLP 226 (713)
Q Consensus 152 l~~~L~~lp~~~-----~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~ 226 (713)
|+++|+.||+++ |++|||||||++||||+++++.+++||+|++|++|+|+|.+++||+|++||++.|+++|++|+
T Consensus 203 l~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~ 282 (770)
T 3efo_B 203 LKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIP 282 (770)
T ss_dssp HHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccccccCCCccceeeeHHHHHHHHHHHHHhhH
Confidence 999999999763 589999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCchHHHHHHHHHhhcC--CCCEEEEEecCCCC-CCCCcccCCCCCCCC-CCCCCCCCcchHHHHHHHHHH
Q psy16627 227 GKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPN-RGPGALQSRENPNQR-SNDDPPHMNPATDFYKKIALE 302 (713)
Q Consensus 227 ~~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~F~~g~pt-~GpG~l~~~~~~~~~-s~~~~~~~~~a~~fY~~La~~ 302 (713)
++|+..+.+.+|+|+||++|..+++. .||||++|++|+|+ .|||+|+.|+++... ++||+++++++++||++||++
T Consensus 283 ~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~ 362 (770)
T 3efo_B 283 DMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKD 362 (770)
T ss_dssp HHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHH
T ss_pred hhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHH
Confidence 99988888899999999999999974 89999999999776 899999999876654 557778999999999999999
Q ss_pred HhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEE
Q psy16627 303 CTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIH 382 (713)
Q Consensus 303 ~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~ 382 (713)
|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+. ..++++|.++|.+.+++++||+|+||||||+||+|+
T Consensus 363 ~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~--~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~ 440 (770)
T 3efo_B 363 CVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQM--HLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRAT 440 (770)
T ss_dssp HHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCH--HHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEE
T ss_pred HHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcc--hhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEE
Confidence 999999999999999999999999999999999999999996 478899999999999999999999999999999999
Q ss_pred EEecCccccCCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCH
Q psy16627 383 TFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQ 462 (713)
Q Consensus 383 ~~~G~~~~~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ 462 (713)
++|||++.++++.|+++++++++||+|+|++++++.+...+|||+|++||+.+|+|||||||++++|++++.++|+++|+
T Consensus 441 ~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dq 520 (770)
T 3efo_B 441 DFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCET 520 (770)
T ss_dssp EEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCH
T ss_pred EeECCeeCCCCCceEecccCcCceEEEEEEecCCCCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHHHhcCH
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCccccCcccchHHHHHHHHhcCccccCCCCCC
Q psy16627 463 ACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHL-TGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTR 541 (713)
Q Consensus 463 ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~-~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s 541 (713)
||++++|||+|+++++++++.++|++|.++++++++.||++|+... +++|+||++||+||+||+||+||++|+.+.+++
T Consensus 521 ea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s 600 (770)
T 3efo_B 521 DALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEIS 600 (770)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSC
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCC
Confidence 9999999999999999999999999999999999999999886543 346999999999999999999999999876899
Q ss_pred hhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCC
Q psy16627 542 LDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHG 621 (713)
Q Consensus 542 ~Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~ 621 (713)
+|||+|+|++++++++.+++.||||+||++|++..+. ...|..++||.++|++|||||||+|++++||+|++
T Consensus 601 ~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~--------~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~ 672 (770)
T 3efo_B 601 TDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKS--------TMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVS 672 (770)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSS--------CSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTT
T ss_pred ccHHHHHHHHHHCCCHHHHHHhhccceEEEecccccc--------ccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCC
Confidence 9999999999999999999999999999999875441 12466688999999999999999999999999999
Q ss_pred CChhHHhhccCCCCCCCCCccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhcccCC-CCCC
Q psy16627 622 TSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKN-AGGM 700 (713)
Q Consensus 622 v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~-~~~~ 700 (713)
+++|+++++||++++++++..+.+||++|++.|+++|++|++||+.|+.++|++|||++++.+..|.++|||||+ ++++
T Consensus 673 v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~~~~~ 752 (770)
T 3efo_B 673 SPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGS 752 (770)
T ss_dssp CCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC---CC
T ss_pred CCHHHHHHhcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999899999999999999 7899
Q ss_pred CHHHHHHHHHHhC
Q psy16627 701 AYYEFLLRIREQV 713 (713)
Q Consensus 701 SY~dfL~~lh~~i 713 (713)
||+||||||||+|
T Consensus 753 SY~dfL~~lh~~i 765 (770)
T 3efo_B 753 SYVDFLCCVHKEI 765 (770)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999986
No 3
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-140 Score=1236.29 Aligned_cols=675 Identities=26% Similarity=0.465 Sum_probs=623.8
Q ss_pred hHhHhhhhhcccccccccccccccccc--cccccCCCCCC-CCCC---CCCCCCCCCCC---------------CCCCCC
Q psy16627 26 QQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTRDI-LPAT---KVEPPPIRLPQ---------------NLPEIH 84 (713)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~p~~---~~~p~~~~~~~---------------~~n~~p 84 (713)
..|+|.|++..|.+.++.+.+..|.|. +|+.++.+.+. +|.+ .+.|+ ||+. |.|.||
T Consensus 43 p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pv--RC~rCrayiNPf~~f~~~g~~w~Cn 120 (766)
T 3eh2_A 43 PRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPL--RCNRCKAYMCPFMQFIEGGRRFQCC 120 (766)
T ss_dssp TTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCC--BCTTTCCBCCTTCEEEGGGTEEECT
T ss_pred CceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCC--ccCCCCCEeCCceEEecCCCEEEec
Confidence 367899999999999999999999998 56555544332 3333 56777 6653 789999
Q ss_pred cccccCCCCCCC----------CCCCCCCccccceEEEEeCCcccC--CCCCCCcEEEEEEEcchhHHhhchHHHHHHHH
Q psy16627 85 EQFLYDRNTEMF----------GDPYRRPEIQSATVEYLATADYTV--RDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVL 152 (713)
Q Consensus 85 ~~~~~~~~~~~y----------~d~~~rpEL~~~tvEy~~p~~y~~--r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl 152 (713)
+|.+.|.+|.+| .|.++||||++++|||++|.||+. | +|+||+|+||||||.+++++|+++++|++|
T Consensus 121 ~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~-~p~pp~y~FvIDvs~~av~sg~l~~~~~si 199 (766)
T 3eh2_A 121 FCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNK-FPSPPAFIFMIDVSYNAIRTGLVRLLCEEL 199 (766)
T ss_dssp TTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGS-CCCCCEEEEEEECSHHHHHTTHHHHHHHHH
T ss_pred cccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCC-CCCCCEEEEEEECchhhccchHHHHHHHHH
Confidence 999999888776 367899999999999999999986 6 899999999999999999999999999999
Q ss_pred HHHhhcCCCC-----CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcc
Q psy16627 153 LNQLKSMPGD-----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPG 227 (713)
Q Consensus 153 ~~~L~~lp~~-----~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~ 227 (713)
+++|+.||++ ++++|||||||++||||+++.+.+++||+|++|++|+|+|.+++||+|++||++.|+++|++|+.
T Consensus 200 ~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~ 279 (766)
T 3eh2_A 200 KSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPE 279 (766)
T ss_dssp HHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCCCCCTTSSBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhhhccccccceeEeHHHHHHHHHHHHHhhhh
Confidence 9999999986 35799999999999999999988899999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCchHHHHHHHHHhhcC--CCCEEEEEecCCCC-CCCCcccCCCCCCCC-CCCCCCCCcchHHHHHHHHHHH
Q psy16627 228 KFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPN-RGPGALQSRENPNQR-SNDDPPHMNPATDFYKKIALEC 303 (713)
Q Consensus 228 ~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~F~~g~pt-~GpG~l~~~~~~~~~-s~~~~~~~~~a~~fY~~La~~~ 303 (713)
+|.+.+.+.+|+|+||++|..+++. .||||++|++|+|+ .|||+|+.|+++... ++||+++++++++||++||++|
T Consensus 280 ~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~ 359 (766)
T 3eh2_A 280 MFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKEC 359 (766)
T ss_dssp HHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHH
T ss_pred hccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHH
Confidence 9988888899999999999999974 79999999999776 899999999876553 5577789999999999999999
Q ss_pred hhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEE
Q psy16627 304 TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHT 383 (713)
Q Consensus 304 ~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~ 383 (713)
+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+. ..+.++|.++|.+.+++++||+|+||||||+||+|++
T Consensus 360 ~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~--~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~ 437 (766)
T 3eh2_A 360 VAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQV--ENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVD 437 (766)
T ss_dssp HHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCH--HHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEE
T ss_pred HhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcc--hhHHHHHHHHHHHHhhhcceeeEEEEEEecCCeEEEE
Confidence 99999999999999999999999999999999999999996 4678999999999999999999999999999999999
Q ss_pred EecCccccCCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHH
Q psy16627 384 FHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQA 463 (713)
Q Consensus 384 ~~G~~~~~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~e 463 (713)
+|||++.+++++|+++++++|+||+|+|++++++.+...+|||+|++||+.+|+|||||||++++|++++.++|+++|+|
T Consensus 438 ~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqe 517 (766)
T 3eh2_A 438 FFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETD 517 (766)
T ss_dssp EEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEEEEESSHHHHHHTBCHH
T ss_pred eECCeecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecCCHHHHHHhcCHH
Confidence 99999999999999999999999999999999987778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCccccCcccchHHHHHHHHhcCccccCCCCCCh
Q psy16627 464 CIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHL-TGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRL 542 (713)
Q Consensus 464 a~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~-~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~ 542 (713)
|++++|||+|+++++++++.++|++|+++++++++.||++|+..+ +++|+||++||+||+||+||+||++|+.+.++++
T Consensus 518 a~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~ 597 (766)
T 3eh2_A 518 TLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTT 597 (766)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCH
T ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCc
Confidence 999999999999999999999999999999999999999875433 3469999999999999999999999998778999
Q ss_pred hHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCC
Q psy16627 543 DDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGT 622 (713)
Q Consensus 543 Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v 622 (713)
|||+|+|+.++++++.+++.||||+||++|++..+. ...|+.++||.++|++|||||||+|++++||+|+++
T Consensus 598 Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~--------~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v 669 (766)
T 3eh2_A 598 DDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVES--------TTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASV 669 (766)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSC--------C--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTC
T ss_pred cHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCccc--------ccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCC
Confidence 999999999999999999999999999999875442 235666889999999999999999999999999999
Q ss_pred ChhHHhhccCCCCCCCCCccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhcccCCCC-CCC
Q psy16627 623 SPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKNAG-GMA 701 (713)
Q Consensus 623 ~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~~~-~~S 701 (713)
++++++++||++++++++..+.+||++|++.|+++|++|++||+.|+.++|++|||++++.+..|.++|||||+++ ++|
T Consensus 670 ~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~~~~S 749 (766)
T 3eh2_A 670 QQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGAS 749 (766)
T ss_dssp CHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTTTCCC
T ss_pred CHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCCCCCC
Confidence 9999999999999999999899999999999999999999999999999999999999989999999999999874 899
Q ss_pred HHHHHHHHHHhC
Q psy16627 702 YYEFLLRIREQV 713 (713)
Q Consensus 702 Y~dfL~~lh~~i 713 (713)
|+||||||||+|
T Consensus 750 Y~dfL~~lh~~i 761 (766)
T 3eh2_A 750 YVDFLCHMHKEI 761 (766)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 4
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=6.7e-136 Score=1206.86 Aligned_cols=685 Identities=30% Similarity=0.518 Sum_probs=603.5
Q ss_pred hhHhHhhhhhcccccccccccccccccc--cccccCCCC-CCCCCCCCCCCCCCCCC---------------CCCCCCcc
Q psy16627 25 QQQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTR-DILPATKVEPPPIRLPQ---------------NLPEIHEQ 86 (713)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~p~~~~~p~~~~~~~---------------~~n~~p~~ 86 (713)
...+.|.|++..|.+.++.+.+..|.|. +|+.++.+. +.+|...+..| +||+. +.|.|++|
T Consensus 62 ~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~p-vRC~~CrayiNPf~~~~~~g~~W~C~~C 140 (810)
T 1pcx_A 62 SPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI-VRCRRCRSYMNPFVTFIEQGRRWRCNFC 140 (810)
T ss_dssp CTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCC-CBCTTTCCBCCTTCEEETTTTEEECTTT
T ss_pred CCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCC-CccCCccCEecCceEEeCCCCEEEccCC
Confidence 4567799999999999999999999998 566555442 34566655423 36653 78999999
Q ss_pred cccCCCCCCC--------CCCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhc
Q psy16627 87 FLYDRNTEMF--------GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS 158 (713)
Q Consensus 87 ~~~~~~~~~y--------~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~ 158 (713)
...|.+|.+| .|..+||||+++||||++|++|+.| +|+||+|+||||+|.+++++|+++++|++|+++|+.
T Consensus 141 ~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~-~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~ 219 (810)
T 1pcx_A 141 RLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS 219 (810)
T ss_dssp CCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS-CCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTT
T ss_pred CCcCCCchhhccccccCccccccCccccCceEEEEcCchhccC-CCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHh
Confidence 9999887765 3667789999999999999999998 899999999999999999999999999999999999
Q ss_pred CCCC-CCceEEEEEEcCeEEEEEcCCCCC-------CCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCccccc
Q psy16627 159 MPGD-RRTSIAIITYDSAVHFYSLAEGQT-------QPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFK 230 (713)
Q Consensus 159 lp~~-~~~~VglITF~~~V~~y~l~~~~~-------~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~ 230 (713)
||++ .+++|||||||++||||+++.+.. +++|++++|++|+|+|.|++||+|++||++.|+++|++|+.+|+
T Consensus 220 Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~ 299 (810)
T 1pcx_A 220 IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQ 299 (810)
T ss_dssp SCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhcc
Confidence 9974 478999999999999999987654 79999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCC-CCCcchHHHHHHHHHHHhhCCe
Q psy16627 231 DSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDP-PHMNPATDFYKKIALECTSFYI 308 (713)
Q Consensus 231 ~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~-~~~-~~~~~a~~fY~~La~~~~~~~i 308 (713)
.++++.||+|+||++|..+|+..||||++|++|+||.|||+|+.|+++..... ||. ++++++.+||++||++|+++||
T Consensus 300 ~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi 379 (810)
T 1pcx_A 300 SNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQI 379 (810)
T ss_dssp TCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTE
T ss_pred CCCCCCccHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCe
Confidence 99999999999999999999999999999999999999999999987755322 454 4999999999999999999999
Q ss_pred EEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCc
Q psy16627 309 AVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNF 388 (713)
Q Consensus 309 svDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~ 388 (713)
+||+|+++.+|+|+++|+.|++.|||.+++|++|+.....+..+|.+|+.+.+++++||+|+||||||+||+|+++||||
T Consensus 380 ~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~ 459 (810)
T 1pcx_A 380 TVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHF 459 (810)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSS
T ss_pred EEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCc
Confidence 99999999999999999999999999999999999754456778999999999999999999999999999999999999
Q ss_pred cccCCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHH
Q psy16627 389 FVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGL 468 (713)
Q Consensus 389 ~~~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~l 468 (713)
+.+++++|+++++++++||+|+|++++++. .+.+|||||++||+.+|+|||||||++++|++++.++|+++|+||++++
T Consensus 460 ~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~l 538 (810)
T 1pcx_A 460 FNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASF 538 (810)
T ss_dssp BCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHH
T ss_pred cccCcCceEeecCCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999886 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CccccCcccchHHHHHHHHhcCccccCCCCCChhHH
Q psy16627 469 LAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT---GSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDR 545 (713)
Q Consensus 469 lar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~---~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der 545 (713)
|||+|+++++++++.|+|+||+++|+++++.||+.+..... ++|+||++||+||+|||||+||++|+ +.+.+.|||
T Consensus 539 lar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der 617 (810)
T 1pcx_A 539 YNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHR 617 (810)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHH
Confidence 99999999999999999999999999999999998765432 25999999999999999999999999 534444999
Q ss_pred HHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcc------cCCCccccCccccccccccccCeEEEEeCCceEEEEec
Q psy16627 546 LFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIE------WNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVR 619 (713)
Q Consensus 546 ~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~------~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG 619 (713)
+|++++++++++.+++.||||+||+||++.++.+.. .+++.+.+|+.++||.+.|+++|+||||+|..+++|+|
T Consensus 618 ~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg 697 (810)
T 1pcx_A 618 ASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMG 697 (810)
T ss_dssp HHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEEC
T ss_pred HHHHHHHHcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeC
Confidence 999999999999999999999999999886665432 34456778999999999999999999999999999999
Q ss_pred CCCChhHHhhccCCCCCCCCCccccCCCCC-chHHhHHHHHHHHHHhhcCC--CcCcEEEEeCCCC--------------
Q psy16627 620 HGTSPAICSGLFGFQSVAQMPETLFELPQL-ETQLSLKLNSFISYLNDDKA--YVSPVKVIKDSSP-------------- 682 (713)
Q Consensus 620 ~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~-d~~~s~~l~~~i~~l~~~r~--~~~p~~iv~~~~~-------------- 682 (713)
+++++++++++||++++.+++....++|++ |++.|+++|++|+.+|+.|. .+++++|||++..
T Consensus 698 ~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~ 777 (810)
T 1pcx_A 698 GDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVAT 777 (810)
T ss_dssp TTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCchhhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhh
Confidence 999999999999999999999989999999 99999999999999999875 5678999987643
Q ss_pred cHHHHHHhhcccCCCCCCCHHHHHHHHHHhC
Q psy16627 683 DRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713 (713)
Q Consensus 683 ~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 713 (713)
.+..|.++||||+.++.+||+|||||||++|
T Consensus 778 ~~~~f~~~LvED~~~~~~SY~~fL~~lh~~i 808 (810)
T 1pcx_A 778 LRLWASSTLVEDKILNNESYREFLQIMKARI 808 (810)
T ss_dssp HHHHHHTTCTTSCBTTBCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCeecCCCCCCCHHHHHHHHHHHh
Confidence 2457889999999999999999999999997
No 5
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=4.5e-136 Score=1212.74 Aligned_cols=686 Identities=30% Similarity=0.518 Sum_probs=594.7
Q ss_pred hhhHhHhhhhhcccccccccccccccccc--cccccCCCC-CCCCCCCCCCCCCCCCC---------------CCCCCCc
Q psy16627 24 QQQQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTR-DILPATKVEPPPIRLPQ---------------NLPEIHE 85 (713)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~p~~~~~p~~~~~~~---------------~~n~~p~ 85 (713)
-...+.|.|++..|.+.++.+.+..|.|. +|+.++.+. +.+|...+..| +||+. +.|.|++
T Consensus 177 ~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~p-vRC~rCrAYiNPf~~~~~~g~~W~Cnf 255 (926)
T 1m2v_B 177 ASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI-VRCRRCRSYMNPFVTFIEQGRRWRCNF 255 (926)
T ss_dssp CCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCC-CBCSSSCCBCCTTCEEETTTTEEECTT
T ss_pred CCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCC-CccCCccCEecCceEEeCCCCEEEccC
Confidence 34567799999999999999999999998 565555432 34566655423 36653 7899999
Q ss_pred ccccCCCCCCCC--------CCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhh
Q psy16627 86 QFLYDRNTEMFG--------DPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLK 157 (713)
Q Consensus 86 ~~~~~~~~~~y~--------d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~ 157 (713)
|...|.+|.+|. |..+||||+++||||++|++|+.| +++||+|+||||||.+++++|+++++|++|+++|+
T Consensus 256 C~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r-~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~ 334 (926)
T 1m2v_B 256 CRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLD 334 (926)
T ss_dssp TCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS-CCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTT
T ss_pred CCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccC-CCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHH
Confidence 999998877663 566779999999999999999998 89999999999999999999999999999999999
Q ss_pred cCCCC-CCceEEEEEEcCeEEEEEcCCCCC-------CCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccc
Q psy16627 158 SMPGD-RRTSIAIITYDSAVHFYSLAEGQT-------QPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKF 229 (713)
Q Consensus 158 ~lp~~-~~~~VglITF~~~V~~y~l~~~~~-------~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~ 229 (713)
.||++ .+++|||||||++||||+++.+.. +++|++++|++|+|+|.+++||+|++||++.|+++|++|+.+|
T Consensus 335 ~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~ 414 (926)
T 1m2v_B 335 SIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIF 414 (926)
T ss_dssp TSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhh
Confidence 99974 478999999999999999998654 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCCC-CCcchHHHHHHHHHHHhhCC
Q psy16627 230 KDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDPP-HMNPATDFYKKIALECTSFY 307 (713)
Q Consensus 230 ~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~-~~~~-~~~~a~~fY~~La~~~~~~~ 307 (713)
..++++.||+|+||++|..+|+.+||||++|++|+||.|||+|+.|+++..... ||.. +++++++||++||++|+++|
T Consensus 415 ~~~~~~~~~~G~AL~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~g 494 (926)
T 1m2v_B 415 QSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQ 494 (926)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHT
T ss_pred cCCCCCCccHHHHHHHHHHHHHhhCCEEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999987754332 4444 99999999999999999999
Q ss_pred eEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecC
Q psy16627 308 IAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGN 387 (713)
Q Consensus 308 isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~ 387 (713)
|+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+...+..+|.+|+.+.+++++||+|+||||||+||+|+++|||
T Consensus 495 isVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~ 574 (926)
T 1m2v_B 495 ITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGH 574 (926)
T ss_dssp EEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESS
T ss_pred eEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecC
Confidence 99999999999999999999999999999999999975445677899999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHH
Q psy16627 388 FFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAG 467 (713)
Q Consensus 388 ~~~~~t~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~ 467 (713)
|+.+++++|+++++++++||+|+|++++++. .+.+|||||++||+.+|+|||||||++++|++++.++|+++|+||+++
T Consensus 575 ~~~~~s~~~~l~~l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~ 653 (926)
T 1m2v_B 575 FFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIAS 653 (926)
T ss_dssp SBCSSTTEEEEEEECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHH
T ss_pred ccccCcCceEeeccCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999886 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CccccCcccchHHHHHHHHhcCccccCCCCCChhH
Q psy16627 468 LLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT---GSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDD 544 (713)
Q Consensus 468 llar~av~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~---~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~De 544 (713)
+|||+|+++++++++.|+|+||+++|+++++.||+.+..... ++|+||++||+||+|||||+||++|+ +.+.+.||
T Consensus 654 llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~De 732 (926)
T 1m2v_B 654 FYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDH 732 (926)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccH
Confidence 999999999999999999999999999999999998875433 25999999999999999999999999 53444499
Q ss_pred HHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcc------cCCCccccCccccccccccccCeEEEEeCCceEEEEe
Q psy16627 545 RLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIE------WNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILV 618 (713)
Q Consensus 545 r~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~------~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~v 618 (713)
|+|++++++++++.+++.||||+||+||++.++.+.. .+++.+.+|+.++||+++|+++|+||||+|..|++|+
T Consensus 733 ra~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWv 812 (926)
T 1m2v_B 733 RASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWM 812 (926)
T ss_dssp HHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEE
T ss_pred HHHHHHHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEe
Confidence 9999999999999999999999999999886665432 3445677888999999999999999999999999999
Q ss_pred cCCCChhHHhhccCCCCCCCCCccccCCCCC-chHHhHHHHHHHHHHhhcCC--CcCcEEEEeCCCC-------------
Q psy16627 619 RHGTSPAICSGLFGFQSVAQMPETLFELPQL-ETQLSLKLNSFISYLNDDKA--YVSPVKVIKDSSP------------- 682 (713)
Q Consensus 619 G~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~-d~~~s~~l~~~i~~l~~~r~--~~~p~~iv~~~~~------------- 682 (713)
|+++++++++++||++++.+++....+||++ |++.|++||++|+.||+.|. .+++++|||+++.
T Consensus 813 G~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~ 892 (926)
T 1m2v_B 813 GGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVA 892 (926)
T ss_dssp CTTCCSGGGC-------------------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHH
T ss_pred cCCCCHHHHHHHhCCCchhhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchh
Confidence 9999999999999999999999988999999 99999999999999999875 5678999986433
Q ss_pred -cHHHHHHhhcccCCCCCCCHHHHHHHHHHhC
Q psy16627 683 -DRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713 (713)
Q Consensus 683 -~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 713 (713)
.+.+|.++||||++++.+||+||||+||++|
T Consensus 893 ~~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 924 (926)
T 1m2v_B 893 TLRLWASSTLVEDKILNNESYREFLQIMKARI 924 (926)
T ss_dssp HHHHHHHHTCTTSSCTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHhCeecCCCCCCCHHHHHHHHHHHh
Confidence 2457889999999999999999999999986
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=1.3e-123 Score=1098.85 Aligned_cols=644 Identities=19% Similarity=0.239 Sum_probs=559.8
Q ss_pred hHhHhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCC-C--CCC------------CCCCCCcccccC
Q psy16627 26 QQQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRDILPATKVEPPPI-R--LPQ------------NLPEIHEQFLYD 90 (713)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~p~~~-~--~~~------------~~n~~p~~~~~~ 90 (713)
..+.|.|++..|.+.++...+..|.|.- +-|+++.+.+|.+.|+|+.+ + |++ +.|.||+|.+.|
T Consensus 9 ~~~vR~T~n~~P~t~~~~~~~~lPlg~v-i~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N 87 (768)
T 1m2o_A 9 INGVRFTWNVFPSTRSDANSNVVPVGCL-YTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRN 87 (768)
T ss_dssp HHSEEESBSEEESSHHHHHHTCSCSEEE-ECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCC
T ss_pred cCceEeeeccCCCCHHHHhcCCCCeEEE-EEeCCCCCCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEcccCCCCC
Confidence 4566899999999999998899998872 24777777899999998833 1 543 789999999999
Q ss_pred CCCCCCC---CCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceE
Q psy16627 91 RNTEMFG---DPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSI 167 (713)
Q Consensus 91 ~~~~~y~---d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~V 167 (713)
.+|.+|. +.++||||+++||||++|+ + +++||+|+||||+|.++++ ++++|++|+++|+.||+++ +|
T Consensus 88 ~~P~~y~~~~~~~~~pEL~~~tvEy~~p~----~-~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~Lp~~~--~V 157 (768)
T 1m2o_A 88 HLPPQYTNLSQENMPLELQSTTIEYITNK----P-VTVPPIFFFVVDLTSETEN---LDSLKESIITSLSLLPPNA--LI 157 (768)
T ss_dssp BCCGGGCC---CCCCGGGTCSEEEEECSC----C-CCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHTSCTTC--EE
T ss_pred CCChHHccCCcccCChhhccCCEEEECCC----C-CCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHhCCCCC--EE
Confidence 9999885 4578999999999999996 4 7899999999999999887 9999999999999999877 99
Q ss_pred EEEEEcCeEEEEEcCCCC---------------CCCeeee--ecC-----c-----CccCCCC---CCCcceehhhhHHH
Q psy16627 168 AIITYDSAVHFYSLAEGQ---------------TQPSQMI--LTD-----I-----DDIFLPS---PENILVNLSECYDM 217 (713)
Q Consensus 168 glITF~~~V~~y~l~~~~---------------~~~q~~v--v~d-----l-----~d~f~P~---~~~~l~~l~e~~~~ 217 (713)
||||||++||||+++.+. +++++++ ++| + +|+|+|. +++||+|++||++.
T Consensus 158 GlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~ 237 (768)
T 1m2o_A 158 GLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFK 237 (768)
T ss_dssp EEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHH
T ss_pred EEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHH
Confidence 999999999999999764 2333333 222 2 5656665 58999999999999
Q ss_pred HHHHHhhCcc---cccCCCCCCCchHHHHHHHHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCC----CC
Q psy16627 218 IVDLLKQLPG---KFKDSLDSGSALGPALQAAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSN----DD 285 (713)
Q Consensus 218 i~~lL~~L~~---~~~~~~~~~~~~G~AL~~A~~ll~----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~-~s~----~~ 285 (713)
|+++|++|+. +++.++++.||+|+||++|..+|+ .+||||++|++|+||.|||+|+.|+++.. ++| |+
T Consensus 238 i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~ 317 (768)
T 1m2o_A 238 LNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSD 317 (768)
T ss_dssp HHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHT
T ss_pred HHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCccccccccccccccccccccc
Confidence 9999999996 457889999999999999999998 68999999999999999999999986654 354 33
Q ss_pred -CCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhcc-
Q psy16627 286 -PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR- 363 (713)
Q Consensus 286 -~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~- 363 (713)
+++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. ++|.++|.|.+++
T Consensus 318 ~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~------~~~~~~l~r~l~~~ 391 (768)
T 1m2o_A 318 HAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFST------AIFKQSYLRLFAKD 391 (768)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTS------HHHHHHHHHTTCBC
T ss_pred hhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCch------HHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999999999999996 5788889998887
Q ss_pred -----ccccceEEEEEecCCceEEEEecCcc----------------ccCCCceeecCCCCCCeEEEEEEeecccC----
Q psy16627 364 -----KIGFESVMRIRCTKGMSIHTFHGNFF----------------VRSTDLLALPNVNPDAGYGIQISIDENLT---- 418 (713)
Q Consensus 364 -----~~g~~a~l~Vr~S~gl~v~~~~G~~~----------------~~~t~~~~l~~i~~~~s~~~~f~~~~~l~---- 418 (713)
++||+|+||||||+||+|++++|||+ .++|+.|+++++++++||+|+|++++++.
T Consensus 392 ~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~~~~~~~ 471 (768)
T 1m2o_A 392 EEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNP 471 (768)
T ss_dssp TTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC------
T ss_pred cccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccccccccc
Confidence 79999999999999999999999998 46789999999999999999999998763
Q ss_pred ---------CCceeEEEEEEEeeecCCCEEEEEEecccccccC-HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy16627 419 ---------HIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSN-INDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREA 488 (713)
Q Consensus 419 ---------~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~-~~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~ 488 (713)
+.+.+|||||++||+.+|+|||||||++++|+++ +.++|+++|+||++++|||+|+++++++++.|+|+|
T Consensus 472 ~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~ 551 (768)
T 1m2o_A 472 MMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRW 551 (768)
T ss_dssp -----------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4678999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhccee
Q psy16627 489 FLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPEL 568 (713)
Q Consensus 489 l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~~~~iyP~L 568 (713)
|++++++++++|+. +.|+.+++|+||++|++||+|||||+||++|+.+ +++||||+|+|+.++++++.+++.||||+|
T Consensus 552 l~~~li~l~~~~~~-Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~-~~spDer~~~~~~l~~~~~~~~l~~iyP~L 629 (768)
T 1m2o_A 552 LDRTLIKLCQKYAD-YNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVF-NNSPDETAFYRHIFTREDTTNSLIMIQPTL 629 (768)
T ss_dssp HHHHHHHHHHHHSB-CCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCT-TSCHHHHHHHHHHHTTSCHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHHH-HhcCCccccccCHHHHHHHHHHHHHhcccccCCC-CCChhHHHHHHHHHHcCCHHHHHHhhCCeE
Confidence 99999999999888 6777788999999999999999999999999986 999999999999999999999999999999
Q ss_pred eecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCccccCCCC
Q psy16627 569 YPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQ 648 (713)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~ 648 (713)
|+||. ++ .|..++||+++|++|||||||+|++|+||+|+++++|+...+++.+.++++.+ ++++|+
T Consensus 630 ~~~~~---------~~----~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~-ll~~p~ 695 (768)
T 1m2o_A 630 TSFSM---------ED----DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKA-LLEEPK 695 (768)
T ss_dssp EEECS---------SS----CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHH-HHHHHH
T ss_pred EEecC---------CC----CCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHH-HhhhhH
Confidence 99993 22 35567799999999999999999999999999999998665555665554432 345554
Q ss_pred CchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHH-HhhcccCCC-------------CCCCHHHHHHHHHHhC
Q psy16627 649 LETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFY-DKLIEDKNA-------------GGMAYYEFLLRIREQV 713 (713)
Q Consensus 649 ~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~-~~LvED~~~-------------~~~SY~dfL~~lh~~i 713 (713)
.|+. + .+++| ++.|++|+++++++++||+ ++|++|.+. +++||.+||+||||.|
T Consensus 696 ~~a~------~---i~~~R--~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~ 763 (768)
T 1m2o_A 696 LEAA------E---LLVDR--FPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVA 763 (768)
T ss_dssp HHHH------H---HHHTC--SSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHH
T ss_pred HHHH------H---HHhcC--CCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHH
Confidence 4422 2 33444 8899999999889999998 899999761 3689999999999974
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=1.8e-119 Score=1062.74 Aligned_cols=638 Identities=18% Similarity=0.225 Sum_probs=545.4
Q ss_pred hhHhHhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCC---CCC------------CCCCCCccccc
Q psy16627 25 QQQQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRDILPATKVEPPPIR---LPQ------------NLPEIHEQFLY 89 (713)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~p~~~~---~~~------------~~n~~p~~~~~ 89 (713)
...+.|.|++..|.+.++...+..|.|.- +-|+++.+.+|.+.|+|+.++ |+. +.|.||+|.+.
T Consensus 17 ~~~~vR~T~n~~P~t~~~~~~~~lPlg~v-i~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~ 95 (769)
T 2nut_A 17 ERDGVRFSWNVWPSSRLEATRMVVPVAAL-FTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 95 (769)
T ss_dssp HHHSEEESBSSBCSSHHHHTTCSSCCEEE-ECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCE
T ss_pred CCCcccceeccCCCChHHHhcccCCeEEE-EeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeCCCCEEEccCCCCC
Confidence 44567999999999999999999998872 247777778999999888331 443 68999999999
Q ss_pred CCCCCCCC---CCCCCCcc--ccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCC
Q psy16627 90 DRNTEMFG---DPYRRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRR 164 (713)
Q Consensus 90 ~~~~~~y~---d~~~rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~ 164 (713)
|.+|.+|. +.++|||| +++||||++|++| |+||+|+||||+|.++++ ++++|++|+++|+.||+++
T Consensus 96 N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~-----p~pp~~vFvIDvS~~a~~---l~~l~~si~~~L~~Lp~~~- 166 (769)
T 2nut_A 96 NQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP-----QMPLIFLYVVDTCMEDED---LQALKESMQMSLSLLPPTA- 166 (769)
T ss_dssp EECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC-----CCCCEEEEEEECCSCHHH---HHHHHHHHHHHHTTSCTTC-
T ss_pred CCCChHHccCCcccCChhhcCCCCcEEEEccCCC-----CCCCEEEEEEECCccHHH---HHHHHHHHHHHHHhCCCCc-
Confidence 99999885 45789999 8999999999865 689999999999999887 8999999999999999876
Q ss_pred ceEEEEEEcCeEEEEEcCCCC---------------CCCeeee-ecC----c-----CccC-CCCCCCcceehhhhHHHH
Q psy16627 165 TSIAIITYDSAVHFYSLAEGQ---------------TQPSQMI-LTD----I-----DDIF-LPSPENILVNLSECYDMI 218 (713)
Q Consensus 165 ~~VglITF~~~V~~y~l~~~~---------------~~~q~~v-v~d----l-----~d~f-~P~~~~~l~~l~e~~~~i 218 (713)
+|||||||++||||+++.+. +|+++++ ++| + +|+| +|. ++||+|++||++.|
T Consensus 167 -~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~-~~~lv~~~e~~~~i 244 (769)
T 2nut_A 167 -LVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPS-NRFLQPVQKIDMNL 244 (769)
T ss_dssp -EEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CC-CSSSEEHHHHHHHH
T ss_pred -eEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccCCCcc-cceeeeHHHHHHHH
Confidence 99999999999999999864 3445433 654 3 7877 555 89999999999999
Q ss_pred HHHHhhCcc-cc--cCCCCCCCchHHHHHHHHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCC----CC-
Q psy16627 219 VDLLKQLPG-KF--KDSLDSGSALGPALQAAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSN----DD- 285 (713)
Q Consensus 219 ~~lL~~L~~-~~--~~~~~~~~~~G~AL~~A~~ll~----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~-~s~----~~- 285 (713)
+++|++|+. +| ..++++.||+|+||++|..+|+ .+||||++|++|+||.|||+|+.++++.. ++| |+
T Consensus 245 ~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~ 324 (769)
T 2nut_A 245 TDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDN 324 (769)
T ss_dssp HHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTC
T ss_pred HHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccch
Confidence 999999996 66 6788999999999999999999 79999999999999999999999986554 343 44
Q ss_pred CCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhcc--
Q psy16627 286 PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR-- 363 (713)
Q Consensus 286 ~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~-- 363 (713)
+++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. +.|..+|++.+++
T Consensus 325 ~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~------~~~~~~l~~~~~~~~ 398 (769)
T 2nut_A 325 AKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNT------SLFKQTFQRVFTKDM 398 (769)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSS------HHHHHHHHHTTCBCT
T ss_pred hhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCch------hhHHHHHHHHHhhhc
Confidence 68999999999999999999999999999999999999999999999999999999996 4555666666654
Q ss_pred ----ccccceEEEEEecCCceEEEEecCcc---------------ccCCCceeecCCCCCCeEEEEEEeecc----cCCC
Q psy16627 364 ----KIGFESVMRIRCTKGMSIHTFHGNFF---------------VRSTDLLALPNVNPDAGYGIQISIDEN----LTHI 420 (713)
Q Consensus 364 ----~~g~~a~l~Vr~S~gl~v~~~~G~~~---------------~~~t~~~~l~~i~~~~s~~~~f~~~~~----l~~~ 420 (713)
++||+|+||||||+||+|+++||||+ .++|+.|+++++++++||+|+|+++++ +.+.
T Consensus 399 ~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~l~~~ 478 (769)
T 2nut_A 399 HGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQG 478 (769)
T ss_dssp TSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC----------
T ss_pred ccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCccccccCCC
Confidence 79999999999999999999999987 578999999999999999999999987 4456
Q ss_pred ceeEEEEEEEeeecCCCEEEEEEecccccccCH---HHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy16627 421 QYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNI---NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVL 497 (713)
Q Consensus 421 ~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~---~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l 497 (713)
+.+|||||++||+.+|+|||||||++++|++++ .++|+++|+||++++|||+|+++++++++.|+|+||++++++++
T Consensus 479 ~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~~li~l~ 558 (769)
T 2nut_A 479 GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLC 558 (769)
T ss_dssp CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999987 59999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCC
Q psy16627 498 STYKMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQD 577 (713)
Q Consensus 498 ~~yr~~~~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~~~~iyP~L~~~~~~~~~ 577 (713)
++|+. +.|+.+++|+||++|++||+|||||+||++|+.+ +++||||+|+|+.++++++.+++.||||+||+||.
T Consensus 559 ~~~~~-Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~-~~spDer~~~~~~l~~~~~~~~~~~iyP~L~~~~~---- 632 (769)
T 2nut_A 559 QKFGE-YHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVF-NNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSF---- 632 (769)
T ss_dssp HHHCB-CCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHSCEEEEECS----
T ss_pred HHHHH-HhCcCcccccccHHHHHHHHHHHHHhcccccCCC-CCCccHHHHHHHHHHcCCHHHHHHhhcCEEEeccC----
Confidence 99987 6777788899999999999999999999999997 99999999999999999999999999999999994
Q ss_pred CCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcc-----ccCCCCCchH
Q psy16627 578 PTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQ 652 (713)
Q Consensus 578 ~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~ 652 (713)
++ .|..++||+++|++|||||||+|++++||+|+++++|+.. +|++.|++ ++++|
T Consensus 633 -----~~----~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~------~~~~~p~~~~~~~~l~~p----- 692 (769)
T 2nut_A 633 -----SG----PPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKS------GYQDMPEYENFRHLLQAP----- 692 (769)
T ss_dssp -----SS----SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHH------TTTTSGGGHHHHHHHHHH-----
T ss_pred -----CC----CCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhC------CCCCCchhhhHHHHHHhH-----
Confidence 22 3556779999999999999999999999999999999954 44444433 22223
Q ss_pred HhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhcccCC-------C----------CCCCHHHHHHHHHHh
Q psy16627 653 LSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKN-------A----------GGMAYYEFLLRIREQ 712 (713)
Q Consensus 653 ~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~-------~----------~~~SY~dfL~~lh~~ 712 (713)
+..++.+.++| ++.|++|+++++++|+||+...++... . +++||..|+.||+|.
T Consensus 693 -----~~~a~~i~~~R-~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~ 763 (769)
T 2nut_A 693 -----VDDAQEILHSR-FPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKL 763 (769)
T ss_dssp -----HHHHHHHHHHS-SSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcC-CCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHH
Confidence 33444444444 899999999999999999955554311 1 278999999999985
No 8
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.23 E-value=1.4e-08 Score=113.31 Aligned_cols=345 Identities=11% Similarity=0.054 Sum_probs=209.9
Q ss_pred CcEEEEEEEcchhHHh-hchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQ-SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 126 pp~~vFvID~s~~a~~-sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
|.-++||||+|.+... ..-++.+++++...++.|+++. +||+|+|++.++.+-- .
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~d--rv~lV~Fs~~a~~~~p---------------------~- 132 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGA--FFAVVAGTEGARVVYP---------------------T- 132 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTC--EEEEEEESSSEEEEES---------------------S-
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCC--EEEEEEEcCceEEEec---------------------C-
Confidence 4669999999987541 2348899999999999998776 9999999988765311 0
Q ss_pred CCcceeh-hhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC---CEEEEEecCCCCCCCCcccCCCCCCC
Q psy16627 205 ENILVNL-SECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNRGPGALQSRENPNQ 280 (713)
Q Consensus 205 ~~~l~~l-~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~F~~g~pt~GpG~l~~~~~~~~ 280 (713)
...+.+. .+.+..+...|+.|. ....+.++.||..|..++.... ..|++++.|.++.+.
T Consensus 133 t~~l~~~~~~~~~~l~~~I~~L~------~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~----------- 195 (464)
T 4fx5_A 133 GGQLLRADYQSRAAAKEAVGRLH------ANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET----------- 195 (464)
T ss_dssp SSSCEECSHHHHHHHHHHHHTCC------CCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC-----------
T ss_pred CcccccCCHHHHHHHHHHHHcCC------CCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCC-----------
Confidence 0011111 234566677777775 2446889999999999997532 478889998876421
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHh
Q psy16627 281 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRY 360 (713)
Q Consensus 281 ~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~ 360 (713)
+ .... -+.++...++.|..|.+.. ..|-..|..++..|||..++.++... -.+.|.+.+.+
T Consensus 196 ----------~-~~l~--~~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~v~d~~~----L~~~f~~i~~~- 256 (464)
T 4fx5_A 196 ----------P-ADLA--RAIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGIIRDPAT----LAEDFREMTAK- 256 (464)
T ss_dssp ----------H-HHHH--HHHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEEESSGGG----HHHHHHHHHHH-
T ss_pred ----------h-HHHH--HHHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEEEcCCHHH----HHHHHHHHHHH-
Confidence 0 0111 2233456788888888854 46778999999999999998877552 12444444443
Q ss_pred hccccccceEEEEEecCCceEEEEec--C----cccc-----C--CCceeecCCCCCCeEEEEEEeecc-cCCCceeE-E
Q psy16627 361 LTRKIGFESVMRIRCTKGMSIHTFHG--N----FFVR-----S--TDLLALPNVNPDAGYGIQISIDEN-LTHIQYAC-F 425 (713)
Q Consensus 361 l~~~~g~~a~l~Vr~S~gl~v~~~~G--~----~~~~-----~--t~~~~l~~i~~~~s~~~~f~~~~~-l~~~~~~~-i 425 (713)
+.....-++.+++++..|..+..+.. + ...+ + ...+.++.+ .+.+-.|.+++.-+ ...+...- .
T Consensus 257 ~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~~g~~~~~~ 335 (464)
T 4fx5_A 257 SMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGNIGQEKLAG 335 (464)
T ss_dssp HHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCCTTCEEEEE
T ss_pred hhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCCCCCceeEEE
Confidence 34567789999999999988765521 1 1111 1 235677777 66665555554422 22233333 7
Q ss_pred EEEEEeeecCCCEEEEEEecccccccCH-------HHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy16627 426 QVAVLYTSSKGDRRIRVHTLCLPVVSNI-------NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLS 498 (713)
Q Consensus 426 Q~a~lYt~~~G~rriRV~T~~l~vt~~~-------~~v~~~~D~ea~~~llar~av~~~~~~~~~d~r~~l~~~li~~l~ 498 (713)
++.+.|.+..|++.+.=..+...|+... .+|.+...+..++..+ +.+......++...|.+.|.+..-...+
T Consensus 336 ~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~~a~~~-~~a~~~~~~gd~~~A~~~L~~A~~~~~~ 414 (464)
T 4fx5_A 336 RVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMAAAI-QEGLDAQAAGDLDTATARLGRAMDLAVE 414 (464)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCccccccccceEEEEEccccccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999988873222223444455443 2333333333333232 3445566667888887777665433222
Q ss_pred --------HHHHhhcCCCCC-ccccCcccchHHHHHHHHhcCc
Q psy16627 499 --------TYKMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHP 532 (713)
Q Consensus 499 --------~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~ 532 (713)
.-++...-+... ..+|-++.+.+=..++..+-+.
T Consensus 415 ~g~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 457 (464)
T 4fx5_A 415 SGHEDTVKMLRKVTEVDPATSKVRAKAKVDKGDAMELDVVSTK 457 (464)
T ss_dssp HTCHHHHHHHHTTEEECTTTCCEEECSSCCHHHHHHHHHHTTB
T ss_pred cCCHHHHHHHHhhEEecCCCCeEEeccCCcccchhhhhccceE
Confidence 112211112222 3666666665555555444333
No 9
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=3.2e-07 Score=91.32 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=125.2
Q ss_pred CCCCcEEEEEEEcchhHHhh----chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCc
Q psy16627 123 PPQPAMYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 198 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~s----g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d 198 (713)
+..+.-++||||+|.+.... ..++.+++.+...++.+++ . +||+|+|++..++.
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~-~--~v~lv~F~~~~~~~------------------- 65 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN-D--KVGMIVFAGDAFTQ------------------- 65 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS-C--EEEEEEESSSEEEE-------------------
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC-C--eEEEEEECCCceEe-------------------
Confidence 35678899999999875432 2588999999999999973 3 99999999775532
Q ss_pred cCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC---CCEEEEEecCCCCCCCCcccCC
Q psy16627 199 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---GGRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 199 ~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---GGrI~~F~~g~pt~GpG~l~~~ 275 (713)
.| +....+.+..+|+.|.... .....+.++.||..|..++... ...|++++.|.++.| .
T Consensus 66 --~~--------~~~~~~~~~~~l~~l~~~~--~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~--~---- 127 (218)
T 3ibs_A 66 --LP--------ITSDYISAKMFLESISPSL--ISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG--G---- 127 (218)
T ss_dssp --EE--------EESCHHHHHHHHHTCCGGG--CCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS--C----
T ss_pred --CC--------CCCCHHHHHHHHHhcCccc--CCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC--c----
Confidence 01 1112355667788886321 2245689999999999999753 357888888887764 0
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCC------------------------ccCchhhcccccC
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ------------------------YVDLATLSGVSKF 331 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~------------------------~~~l~~l~~l~~~ 331 (713)
..+.+..+.+.||.|..+.+..+ ..+-..|..+|+.
T Consensus 128 --------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~ 187 (218)
T 3ibs_A 128 --------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKD 187 (218)
T ss_dssp --------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHh
Confidence 14677888899999999988764 5677889999999
Q ss_pred CCceEEEeCCCCCCcchhHHHHHHHHHHh
Q psy16627 332 SSGCIHHIPLYSGKNMSHVYQLDRMFSRY 360 (713)
Q Consensus 332 TGG~v~~y~~f~~~~~~~~~~~~~dl~~~ 360 (713)
|||..++..+-. ...+.+.+.+.+.
T Consensus 188 ~gG~~~~~~~~~----~~~~~~~~~i~~l 212 (218)
T 3ibs_A 188 GKGIYVRVDNSN----SAQKAISQEISKM 212 (218)
T ss_dssp TEEEEEEECSSS----HHHHHHHHHHHHH
T ss_pred cCCEEEECCCCh----HHHHHHHHHHHHh
Confidence 999988876532 1235566666554
No 10
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.35 E-value=1.6e-05 Score=78.37 Aligned_cols=163 Identities=9% Similarity=0.057 Sum_probs=108.2
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
|.-.+||||+|.+-- ..-++.+++.++..++.++-. ...+||+|+|++..+..- |+
T Consensus 13 ~~divfvlD~SgSm~-~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~---------------------~l- 69 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLS-EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYI---------------------GL- 69 (202)
T ss_dssp CEEEEEEEECBTTSC-HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEE---------------------CT-
T ss_pred cccEEEEEECCCCCC-HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEE---------------------ec-
Confidence 677999999998632 223788999999999988721 245999999999876420 00
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH-hhcC---CC--CEEEEEecCCCCCCCCcccCCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP---TG--GRITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~---~G--GrI~~F~~g~pt~GpG~l~~~~~~ 278 (713)
..+ ..++.+...++.|+.. ....+.+|.||..|.. ++.. .+ -.|++++.|.++.|..
T Consensus 70 ~~~-----~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~-------- 132 (202)
T 1ijb_A 70 KDR-----KRPSELRRIASQVKYA----GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMS-------- 132 (202)
T ss_dssp TCC-----CCHHHHHHHHHTCCCC----CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGC--------
T ss_pred CCC-----CCHHHHHHHHHhCcCC----CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccch--------
Confidence 000 1234556667777531 1124899999999974 5542 11 2578888887654310
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccC-CCceEEEeCCCCC
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF-SSGCIHHIPLYSG 344 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~-TGG~v~~y~~f~~ 344 (713)
+-..+.+..+.+.||.|-.+.+.. ..|..+|..++.. +||.++..++|+.
T Consensus 133 ---------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 133 ---------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp ---------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred ---------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 012456677777888776666643 4688889999874 6889999888764
No 11
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.29 E-value=1.4e-05 Score=79.42 Aligned_cols=175 Identities=16% Similarity=0.233 Sum_probs=108.2
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 123 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
+..|.-++||||+|.+... ..++.+++++...++.++. +...+||+|+|++.++..- .+.+
T Consensus 12 ~~~~~div~vlD~SgSM~~-~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~--- 73 (223)
T 1q0p_A 12 PSGSMNIYLVLDGSDSIGA-SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE--- 73 (223)
T ss_dssp ---CEEEEEEEECSTTTCH-HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE--------------CTTS---
T ss_pred CCCceeEEEEEeCCCCCch-HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee--------------cccc---
Confidence 4568899999999986432 2377888888888766543 2234999999999875420 0100
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCC-----------CEEEEEecCCCCCCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-----------GRITIFQTCLPNRGPG 270 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-----------GrI~~F~~g~pt~GpG 270 (713)
+....++.+...|+.|.... ......+.+|.||..|...|...+ ..|++++.|.++.|..
T Consensus 74 --------~~~~~~~~~~~~i~~l~~~~-~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~ 144 (223)
T 1q0p_A 74 --------ADSSNADWVTKQLNEINYED-HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD 144 (223)
T ss_dssp --------GGGGCHHHHHHHHHTCCTTS-CSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC
T ss_pred --------CCCCCHHHHHHHHHhccccc-ccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC
Confidence 11223455667777775310 013567899999999999987421 2488899998887531
Q ss_pred cccCCCCCCCCCCCCCCCCcchHHHHHHH------HHHHhhCCeEEEEEEecCCccCchhhcccccCCCc--eEEEeCCC
Q psy16627 271 ALQSRENPNQRSNDDPPHMNPATDFYKKI------ALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHIPLY 342 (713)
Q Consensus 271 ~l~~~~~~~~~s~~~~~~~~~a~~fY~~L------a~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG--~v~~y~~f 342 (713)
+. ...+-.+++ +..+.+.|+.|..+.+.. ..+...|..++..||| .++..+++
T Consensus 145 -------~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~~~~ 205 (223)
T 1q0p_A 145 -------PI-----------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDM 205 (223)
T ss_dssp -------TH-----------HHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEETTC-
T ss_pred -------hH-----------HHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEcCCH
Confidence 00 011111111 122345667666666543 4788899999999999 78877765
Q ss_pred C
Q psy16627 343 S 343 (713)
Q Consensus 343 ~ 343 (713)
.
T Consensus 206 ~ 206 (223)
T 1q0p_A 206 E 206 (223)
T ss_dssp -
T ss_pred H
Confidence 5
No 12
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.28 E-value=2.2e-05 Score=76.16 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=109.1
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.|.-.+||||+|.+.. ..-++.+++.+...++.++. ..+.+||+|+|++.++.. .|+
T Consensus 4 ~~~div~vlD~SgSm~-~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~---------------------~~l 61 (189)
T 1atz_A 4 QPLDVILLLDGSSSFP-ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTID---------------------VPW 61 (189)
T ss_dssp CCEEEEEEEECSSSSC-HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE---------------------ECT
T ss_pred CceeEEEEEeCCCCCC-hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEE---------------------Eec
Confidence 4678999999998633 23478899999999988863 335699999999876641 011
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC--CC-----CE-EEEEecCCCCCCCCcccCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TG-----GR-ITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~G-----Gr-I~~F~~g~pt~GpG~l~~~ 275 (713)
.. ...++.+...++.++. ....+.+|.||..|...+.. .| .| |+++++|.++.+
T Consensus 62 ~~------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~------- 123 (189)
T 1atz_A 62 NV------VPEKAHLLSLVDVMQR-----EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS------- 123 (189)
T ss_dssp TC------CCCHHHHHHHHHTCCC-----CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-------
T ss_pred CC------CCCHHHHHHHHHhCcC-----CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-------
Confidence 00 0123456667777753 24568999999999997743 12 25 677888754311
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCc-eEEEeCCCC
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPLYS 343 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG-~v~~y~~f~ 343 (713)
..+.+..+.+.|+.|..+.+.. ..+..+|..++..++| +++...+|.
T Consensus 124 --------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 124 --------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp --------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred --------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcccCEEEecChh
Confidence 1456777788898887777754 3678889999998875 577777665
No 13
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.5e-06 Score=86.58 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=100.9
Q ss_pred EEEEEEEcchhHHhh----chHHHHHHHHHHHhhcC---CCCCCceEEEEEEcC-eEEEEEcCCCCCCCeeeeecCcCcc
Q psy16627 128 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSM---PGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDDI 199 (713)
Q Consensus 128 ~~vFvID~s~~a~~s----g~l~~~~~sl~~~L~~l---p~~~~~~VglITF~~-~V~~y~l~~~~~~~q~~vv~dl~d~ 199 (713)
+-|||||+|.+.... ..+++.++++...++.+ .+.. +||||||.. ...+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed--~VGLVtfag~~~~v--------------------- 61 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPEN--TVGLISGAGANPRV--------------------- 61 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTC--EEEEEECCTTSCEE---------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcc--eEEEEEecCCccee---------------------
Confidence 468999999875421 25788888887776543 2333 899999953 2111
Q ss_pred CCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccC
Q psy16627 200 FLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQS 274 (713)
Q Consensus 200 f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~F~~g~pt~GpG~l~~ 274 (713)
++++...+..|...|+.|. ....+.++.||+.|..+|++ .+ -||++|++|+-+.
T Consensus 62 --------l~plT~D~~~il~aL~~l~------~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~------- 120 (268)
T 4b4t_W 62 --------LSTFTAEFGKILAGLHDTQ------IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD------- 120 (268)
T ss_dssp --------EEEEESCHHHHHHHHTTCC------CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-------
T ss_pred --------ccCCcchHHHHHHHhhhcC------cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-------
Confidence 1111223455667777774 34568999999999999974 22 3899999986331
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCc
Q psy16627 275 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 334 (713)
Q Consensus 275 ~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG 334 (713)
..+-..++|+++.++||.||++.+..+..+-.-|..+++..+|
T Consensus 121 -----------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 121 -----------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp -----------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred -----------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 1234578999999999999999998766666777777665544
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.25 E-value=2.9e-05 Score=76.16 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=106.7
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.+.-.+||||+|.+... ++.+++.++..++.+.- ....+||+|+|++..+.. .|+
T Consensus 5 ~~~div~vlD~SgSm~~---~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~---------------------~~l 60 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYP---WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVV---------------------FNL 60 (200)
T ss_dssp -CEEEEEEEECCTTCCC---HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEE---------------------ECT
T ss_pred CcccEEEEEECCCCccc---HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEE---------------------EeC
Confidence 46789999999986432 78899999999988862 124599999999976531 111
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHh-hcC-CCC------EEEEEecCCCCCCCCcccCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TGG------RITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~GG------rI~~F~~g~pt~GpG~l~~~ 275 (713)
. .+ ..+..+.+.++.++. .....+.+|.||..|... +.. .|+ .|++++.|.++.+.
T Consensus 61 ~-~~-----~~~~~~~~~i~~l~~----~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~------ 124 (200)
T 1v7p_C 61 N-TY-----KTKEEMIVATSQTSQ----YGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS------ 124 (200)
T ss_dssp T-TC-----SSHHHHHHHHHHCCC----CCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG------
T ss_pred C-Cc-----CCHHHHHHHHHhhhc----cCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc------
Confidence 0 00 123344455666642 111258899999999984 542 232 48888998866321
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecC----CccC----chhhcccccCCCce-EEEeCCCCC
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNS----QYVD----LATLSGVSKFSSGC-IHHIPLYSG 344 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~----~~~~----l~~l~~l~~~TGG~-v~~y~~f~~ 344 (713)
-..+.+.++.+.||.|..+.+.. ...+ ..+|..++..|||. ++..+++..
T Consensus 125 -------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 125 -------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp -------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred -------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 12457777888999888777732 2344 57899999999885 566777663
No 15
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.25 E-value=4.6e-05 Score=73.14 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=100.8
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
.|.-.+||||+|.+... ...+ .++.+++.+..+-. .+.+||+|+|++..+..- |
T Consensus 5 ~~~dvv~vlD~SgSM~~-~~~~-~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~---------------------~-- 58 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVAN-NWIE-IYNFVQQLAERFVS-PEMRLSFIVFSSQATIIL---------------------P-- 58 (182)
T ss_dssp SCEEEEEEEECSGGGGG-GHHH-HHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE---------------------E--
T ss_pred CceeEEEEEECCCCccc-CHHH-HHHHHHHHHHHhcC-CCceEEEEEeCCCceEEE---------------------C--
Confidence 47789999999986443 2222 34444444444322 245999999998765321 0
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPN 279 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~~~~~~~ 279 (713)
+...+..+...++.|... .....+.++.||..|...+.. ....|++++.|.++.+
T Consensus 59 ------~~~~~~~~~~~l~~l~~~---~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------- 118 (182)
T 1shu_X 59 ------LTGDRGKISKGLEDLKRV---SPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------- 118 (182)
T ss_dssp ------EECCHHHHHHHHHHHHTC---CCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT-----------
T ss_pred ------CCCCHHHHHHHHHhcccC---CCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC-----------
Confidence 001234455566665432 123478899999999999853 3467888888876521
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCC
Q psy16627 280 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 343 (713)
Q Consensus 280 ~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~ 343 (713)
........+..+.+.|+.|..+.+. ..+-.+|..++..+||..+.-++|.
T Consensus 119 ------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~~~~~~~~~ 168 (182)
T 1shu_X 119 ------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQ 168 (182)
T ss_dssp ------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGEEESSSTTH
T ss_pred ------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCceEEccCCHH
Confidence 1123356777888899877777665 5678899999999977543332443
No 16
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.22 E-value=1.1e-05 Score=78.87 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=106.0
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.+.-.+||||+|.+... ..++.+++.++..++.+. ....+||+|+|++.++.. .+. +..
T Consensus 8 ~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~~~~~~~~------------~~~------ 67 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISS-RNFATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQTHFTFE------------EFR------ 67 (198)
T ss_dssp CCEEEEEEEECCTTSCH-HHHHHHHHHHHHHHTTSC-TTTEEEEEEEESSSEEEEECHH------------HHH------
T ss_pred CCeeEEEEEECCCCCCH-HHHHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCccEEEecC------------ccC------
Confidence 56789999999976432 235678899999998884 223499999999986532 110 000
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHH-HhhcC-------CCCEEEEEecCCCCCCCCcccCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF-KLLQP-------TGGRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~-~ll~~-------~GGrI~~F~~g~pt~GpG~l~~~ 275 (713)
.+..+...++.+.. ....+.+|.||..|. .++.. ....|++++.|.++.++-.
T Consensus 68 ----------~~~~~~~~i~~l~~-----~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~---- 128 (198)
T 1n3y_A 68 ----------RSSNPLSLLASVHQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLD---- 128 (198)
T ss_dssp ----------HCSSGGGGGTTCCC-----CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC----
T ss_pred ----------CHHHHHHHHhcCcC-----CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCccc----
Confidence 00111122233321 234789999999999 55543 1236888999987743210
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc---cCchhhcccccCCCceE-EEeCCCCC
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSGCI-HHIPLYSG 344 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~---~~l~~l~~l~~~TGG~v-~~y~~f~~ 344 (713)
+.+.+..+.+.|+.|..+.+..+. .+...|..++..|||.. +..+++..
T Consensus 129 --------------------~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 129 --------------------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp --------------------HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred --------------------HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 245677788899988888876553 36889999999999974 66676653
No 17
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.20 E-value=1e-05 Score=78.98 Aligned_cols=162 Identities=10% Similarity=0.153 Sum_probs=105.2
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
.|.-.+||||+|.+... .-++.+++.++..++.+. ....+||+|+|++.++..- ++.+
T Consensus 4 ~~~div~vlD~SgSm~~-~~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~~~~--------------~l~~------ 61 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIP-HDFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFRIHF--------------TFKE------ 61 (194)
T ss_dssp CCEEEEEEEECCTTSCH-HHHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEEEEE--------------CHHH------
T ss_pred CCeeEEEEEeCCCCCCH-HHHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCceEEE--------------ecCC------
Confidence 46789999999986332 236778888888888775 2345999999999765310 0000
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH-hhcC-CCC------EEEEEecCCCCCCCCcccCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TGG------RITIFQTCLPNRGPGALQSRE 276 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~GG------rI~~F~~g~pt~GpG~l~~~~ 276 (713)
. ..++.+...++.|+. ....+.+|.||..|.. ++.. .|+ .|++++.|.++..+-.
T Consensus 62 ------~-~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~----- 124 (194)
T 1mf7_A 62 ------F-QNNPNPRSLVKPITQ-----LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG----- 124 (194)
T ss_dssp ------H-HHSCCHHHHHTTCCC-----CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC-----
T ss_pred ------c-CCHHHHHHHHHhCcC-----CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh-----
Confidence 0 011223445566642 2357899999999996 4432 233 4888899988711100
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc---cCchhhcccccCC-CceEEEeCCCCC
Q psy16627 277 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFS-SGCIHHIPLYSG 344 (713)
Q Consensus 277 ~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~---~~l~~l~~l~~~T-GG~v~~y~~f~~ 344 (713)
+.+.+.++.+.||.|..+.+..+. .+..+|..++..+ +|.++..+++..
T Consensus 125 -------------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 125 -------------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp -------------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred -------------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 123456667789887777775432 1378899999986 588888888764
No 18
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.19 E-value=1.7e-05 Score=79.24 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=107.2
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.+.-.+||||+|.+... ++.+++.+...++.+.- ....+||+|+|++.++..- |+
T Consensus 21 ~~~div~vlD~SgSM~~---~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~---------------------~l 76 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYP---WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF---------------------NL 76 (223)
T ss_dssp -CEEEEEEEECSTTCCC---HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEE---------------------CT
T ss_pred CcceEEEEEECCCChhh---HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEE---------------------ec
Confidence 46779999999986432 78899999999988752 2345999999998876420 11
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHh-hcC-CC------CEEEEEecCCCCCCCCcccCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TG------GRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~G------GrI~~F~~g~pt~GpG~l~~~ 275 (713)
..+ ..+..+.+.++.+.. .....+.+|.||..|... +.. .| ..|++++.|.++.|.
T Consensus 77 -~~~-----~~~~~~~~~i~~l~~----~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~------ 140 (223)
T 2b2x_A 77 -NKY-----SSTEEVLVAANKIVQ----RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY------ 140 (223)
T ss_dssp -TTC-----CSHHHHHHHHTTCCC----CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG------
T ss_pred -CCC-----CCHHHHHHHHHhhhc----cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------
Confidence 000 012333444555531 112248899999999986 442 11 248888888876542
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCcc--------CchhhcccccC-CCceEEEeCCCCC
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYV--------DLATLSGVSKF-SSGCIHHIPLYSG 344 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~--------~l~~l~~l~~~-TGG~v~~y~~f~~ 344 (713)
-..+.+..+.+.||.|..+.+..+.- ...+|..++.. |||.++..+++..
T Consensus 141 -------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 141 -------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp -------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred -------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 12467778888999888777754321 04789999998 9999999887763
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.16 E-value=2.3e-05 Score=81.38 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=112.2
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
.+.-++||||.|.+.....+++.++++++..++.++.. ...+||+|+|++.++.. .+....
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~----------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA----------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC-----------------
Confidence 47789999999987554456688999999999998752 34699999999877532 222100
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCC------EEEEEecCCCCCCCCcccCCC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG------RITIFQTCLPNRGPGALQSRE 276 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG------rI~~F~~g~pt~GpG~l~~~~ 276 (713)
. ..++.+...|+.|.... .....+.+|.||..|...+...++ .|+++++|.++.+
T Consensus 83 ---~------~~~~~l~~~i~~l~~~~--~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~-------- 143 (281)
T 4hqf_A 83 ---S------KNKEKALIIIKSLLSTN--LPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSI-------- 143 (281)
T ss_dssp ---S------SCHHHHHHHHHHHHHTT--GGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCH--------
T ss_pred ---c------cCHHHHHHHHHHHhhcc--CCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCc--------
Confidence 0 01233445555554210 123478899999999888765443 4788888876521
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccC--CCc--eEEEeCCCCC
Q psy16627 277 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF--SSG--CIHHIPLYSG 344 (713)
Q Consensus 277 ~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~--TGG--~v~~y~~f~~ 344 (713)
.-..+.+..+.+.||.|-.+.+..+ .+-..|..++.. +|| .++...+|+.
T Consensus 144 -----------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 144 -----------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred -----------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 1224567777888987777776543 677788888876 676 7888888874
No 20
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.15 E-value=4.2e-05 Score=73.58 Aligned_cols=158 Identities=9% Similarity=0.027 Sum_probs=103.6
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
.|.-.+||||+|.+.... .+.+++.+++.+..+-. ++.+||+|+|++.+++.- |
T Consensus 6 ~~~div~vlD~SgSM~~~--~~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~---------------------~-- 59 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHH--WNEIYYFVEQLAHKFIS-PQLRMSFIVFSTRGTTLM---------------------K-- 59 (185)
T ss_dssp SEEEEEEEEECSGGGGGG--HHHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE---------------------E--
T ss_pred CCeeEEEEEeCCCChhhh--HHHHHHHHHHHHHHhCC-CCcEEEEEEEecCceEEe---------------------c--
Confidence 356689999999875432 55666777777666522 356999999998765421 1
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhc--CCC-----CEEEEEecCCCCCCCCcccCCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ--PTG-----GRITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~--~~G-----GrI~~F~~g~pt~GpG~l~~~~~ 277 (713)
+.+.++.+...++.|+.. .....+.+|.||..|...+. ..+ ..|++++.|.++.++.
T Consensus 60 ------l~~~~~~~~~~i~~l~~~---~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~------- 123 (185)
T 3n2n_F 60 ------LTEDREQIRQGLEELQKV---LPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLF------- 123 (185)
T ss_dssp ------EECCHHHHHHHHHHHHTC---CCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHH-------
T ss_pred ------cCCCHHHHHHHHHHHhhh---cCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcc-------
Confidence 111344556666666532 23456889999999999772 222 3677788876543210
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCC-CC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL-YS 343 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~-f~ 343 (713)
.--++.+..+.+.|+.|..+.+. ..+-.+|..++.. +|.+|+..+ |.
T Consensus 124 ----------------~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~~~~ 171 (185)
T 3n2n_F 124 ----------------FYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVNDGFQ 171 (185)
T ss_dssp ----------------HHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHHHHH
T ss_pred ----------------cchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEeccHHH
Confidence 01246778888889877776665 6788899999964 677777654 43
No 21
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.13 E-value=1.9e-05 Score=81.39 Aligned_cols=166 Identities=10% Similarity=0.024 Sum_probs=108.4
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.+.-++||||.|.+.-...+.+.+++.++..++.+.- ....+||+|+|++.++.. +|+
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~---------------------~~l 75 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTEL---------------------IRL 75 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEE---------------------ECT
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceE---------------------Eec
Confidence 4677999999998754444435788999999988862 134599999999876531 111
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCC------EEEEEecCCCCCCCCcccCCCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG------RITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG------rI~~F~~g~pt~GpG~l~~~~~ 277 (713)
..+ -...++.+...|+.|+.. ......+.+|.||..|..++...|+ .|+++++|.++- +
T Consensus 76 -~~~---~~~~~~~~~~~i~~l~~~--~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d-~-------- 140 (266)
T 4hqo_A 76 -GSG---QSIDKRQALSKVTELRKT--YTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS-K-------- 140 (266)
T ss_dssp -TSH---HHHCHHHHHHHHHHHHHH--CCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC-H--------
T ss_pred -CCC---CccCHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC-c--------
Confidence 010 011234555666666411 1234478999999999999876544 478888887651 0
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCC--Cc--eEEEeCCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS--SG--CIHHIPLYS 343 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~T--GG--~v~~y~~f~ 343 (713)
.-..+.+.++.+.||.|-.+.+.. ..+-..|..++... || .++++.+|+
T Consensus 141 ----------------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 141 ----------------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred ----------------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 123567788888998777766644 46667778888764 43 777776654
No 22
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.10 E-value=3.4e-05 Score=76.41 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=106.7
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCC-CCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMP-GDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp-~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
+.+.-.+||||+|.+... ++.+++.+...++.+. .....+||+|+|++.++.. .|
T Consensus 5 ~~~~div~vlD~SgSm~~---~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~---------------------~~ 60 (213)
T 1pt6_A 5 STQLDIVIVLDGSNSIYP---WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE---------------------FN 60 (213)
T ss_dssp --CEEEEEEEECCTTCCC---HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEE---------------------EC
T ss_pred CCCccEEEEEECCCChhh---HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEE---------------------Ee
Confidence 347789999999986432 7888999999888875 1234599999999877541 11
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHh-hcC-CC------CEEEEEecCCCCCCCCcccC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TG------GRITIFQTCLPNRGPGALQS 274 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~G------GrI~~F~~g~pt~GpG~l~~ 274 (713)
+ ..+ ..+..+.+.++.+.. .....+.+|.||..|... +.. .| ..|++++.|.++.|.
T Consensus 61 l-~~~-----~~~~~~~~~i~~l~~----~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~----- 125 (213)
T 1pt6_A 61 L-NKY-----SSTEEVLVAAKKIVQ----RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNH----- 125 (213)
T ss_dssp T-TTC-----SSHHHHHHHHHTCCC----CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSH-----
T ss_pred c-ccc-----CCHHHHHHHHHhccC----CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----
Confidence 1 000 122334445555532 122347899999999986 442 11 248888888766531
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc----cC----chhhcccccC-CCceEEEeCCCCC
Q psy16627 275 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY----VD----LATLSGVSKF-SSGCIHHIPLYSG 344 (713)
Q Consensus 275 ~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~----~~----l~~l~~l~~~-TGG~v~~y~~f~~ 344 (713)
-..+.+.++.+.|+.|..+.+..+. .+ ..+|..++.. |||.++..+++..
T Consensus 126 --------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 126 --------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp --------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred --------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 1356777888899887777765321 11 3689999998 7899999887764
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.08 E-value=6.3e-05 Score=84.68 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=111.0
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcC---CCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCcc
Q psy16627 123 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM---PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 199 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~l---p~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~ 199 (713)
+..+.-.+||||+|.+...+ -++.++++++..++.| +++. +||+|+|++..++.-
T Consensus 6 ~~~~~divfvlD~SgSM~~~-~~~~~k~~~~~l~~~l~~~~~~~--rv~lv~f~~~~~~~~------------------- 63 (509)
T 2odp_A 6 RSGHLNLYLLLDASQSVSEN-DFLIFKESASLMVDRIFSFEINV--SVAIITFASEPKVLM------------------- 63 (509)
T ss_dssp SSSEEEEEEEEECSTTSCHH-HHHHHHHHHHHHHHHHHTTCCCE--EEEEEEESSSEEEEE-------------------
T ss_pred CCCCeeEEEEEeCCCccchh-hHHHHHHHHHHHHHHhhccCCCc--eEEEEEccCCCceeE-------------------
Confidence 45678899999999864322 3688899999988877 4444 999999998766421
Q ss_pred CCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC----C----------CEEEEEecCCC
Q psy16627 200 FLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT----G----------GRITIFQTCLP 265 (713)
Q Consensus 200 f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~----G----------GrI~~F~~g~p 265 (713)
|+.. +....++.+...|+.|+.... .....+.++.||..|..++... | ..|++++.|.+
T Consensus 64 --~l~~----~~~~~~~~~~~~l~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~ 136 (509)
T 2odp_A 64 --SVLN----DNSRDMTEVISSLENANYKDH-ENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKS 136 (509)
T ss_dssp --CTTS----GGGGCHHHHHHHHHTCCGGGG-TTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCC
T ss_pred --eccC----CCCCCHHHHHHHHHhcccccC-CCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCc
Confidence 1100 011234556677777763211 1146789999999999998431 1 35799999988
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh---------hCCeEEEEEEecCCccCchhhcccccCCCce-
Q psy16627 266 NRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECT---------SFYIAVDLFILNSQYVDLATLSGVSKFSSGC- 335 (713)
Q Consensus 266 t~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~---------~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~- 335 (713)
+.|. .. ...+..+. +.|+.|..+.+..+..+..+|..++..+||.
T Consensus 137 ~~~~-~~------------------------~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~ 191 (509)
T 2odp_A 137 NMGG-SP------------------------KTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGER 191 (509)
T ss_dssp CSSS-CT------------------------HHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCC
T ss_pred cCCC-Ch------------------------hHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCce
Confidence 8752 10 11222222 6677777777755548999999999999998
Q ss_pred -EEEeCCC
Q psy16627 336 -IHHIPLY 342 (713)
Q Consensus 336 -v~~y~~f 342 (713)
+++.+++
T Consensus 192 ~~~~~~~~ 199 (509)
T 2odp_A 192 HAFILQDT 199 (509)
T ss_dssp CEEEESSH
T ss_pred eeEEecCH
Confidence 6665554
No 24
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.05 E-value=2.6e-07 Score=89.94 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcC-CCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~l-p~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.|..++||||+|.+.. ...++.+++++...++.+ +++. +||+|+|++... +..+|.
T Consensus 4 ~~~~vv~vlD~SgSM~-~~~~~~~k~~~~~~~~~~~~~~~--~v~lv~f~~~~~--------------------~~~~~~ 60 (189)
T 2x31_A 4 SDRVLIFAVDASGSAA-VARLSEAKGAVELLLGRAYAARD--HVSLITFRGTAA--------------------QVLLQP 60 (189)
T ss_dssp SCCEEEEEEECCTTSC-C--CHHHHHHHHHHHHHSCTTTS--CCCEEEESBSCC--------------------CBCTTT
T ss_pred CCeEEEEEEECCCCCC-chHHHHHHHHHHHHHHHhcCCCc--EEEEEEECCCCc--------------------eEecCC
Confidence 4677999999998742 234788899999988776 5555 899999986210 011222
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCcccCCCCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQSRENP 278 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt~GpG~l~~~~~~ 278 (713)
. .....+...|+.|. ....+.++.||..|..++... ...|++++.|.++.|.+.-...++.
T Consensus 61 ~--------~~~~~~~~~i~~l~------~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~ 126 (189)
T 2x31_A 61 S--------RSLTQTKRQLQGLP------GGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELA 126 (189)
T ss_dssp C--------SCHHHHHHHHHHCC------CCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGG
T ss_pred C--------CCHHHHHHHHhcCC------CCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccch
Confidence 1 12344556666664 234678999999999988642 3478888999999875310000000
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy16627 279 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 358 (713)
Q Consensus 279 ~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 358 (713)
. .+. .+++..+.+.||.|..+.+... +...|..++..|||..++.++ ...+.|.+.+.
T Consensus 127 ~----~~~----------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~------~~~~~~~~~~~ 184 (189)
T 2x31_A 127 G----EQA----------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR------ATAHKMADVLG 184 (189)
T ss_dssp T----CCC----------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH------HHHHHHHHHHH
T ss_pred h----HHH----------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCC------cchHHHHHHHH
Confidence 0 000 0111222334443333322222 667899999999998665432 22355666555
Q ss_pred Hh
Q psy16627 359 RY 360 (713)
Q Consensus 359 ~~ 360 (713)
+.
T Consensus 185 ~~ 186 (189)
T 2x31_A 185 AA 186 (189)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 25
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.04 E-value=4.9e-05 Score=74.45 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=94.0
Q ss_pred EEEEEEEcchhHHhh----chHHHHHHHHHHHh----hcCCCCCCceEEEEEEcCe-EEEEEcCCCCCCCeeeeecCcCc
Q psy16627 128 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQL----KSMPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDD 198 (713)
Q Consensus 128 ~~vFvID~s~~a~~s----g~l~~~~~sl~~~L----~~lp~~~~~~VglITF~~~-V~~y~l~~~~~~~q~~vv~dl~d 198 (713)
..+|+||+|.+.... ..++..++++...+ +.-|++ +||||+|+.. .++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d---~vGLV~fa~~~a~~-------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPEN---MCGLMTIGDNSPQV-------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTC---EEEEEECCTTSCCE--------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC---eEEEEEEcCCCcEE--------------------
Confidence 478999999875432 24777777766543 344543 8999999752 211
Q ss_pred cCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCccc
Q psy16627 199 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQ 273 (713)
Q Consensus 199 ~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt~GpG~l~ 273 (713)
++|+......+...|+.+.. ...+++|.||..|..+|+.. +.||++|+++.-+.+
T Consensus 61 ---------~~plT~d~~~i~~~L~~l~~------~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~----- 120 (192)
T 2x5n_A 61 ---------LSTLTRDYGKFLSAMHDLPV------RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED----- 120 (192)
T ss_dssp ---------EEEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSC-----
T ss_pred ---------ecCCCCCHHHHHHHHHcCCC------CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCC-----
Confidence 11222234566677777542 24689999999999999763 357888887632111
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCC
Q psy16627 274 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 332 (713)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~T 332 (713)
..-..++++.+.++||.|++..++.+.-+-. |..+++.+
T Consensus 121 -------------------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 121 -------------------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp -------------------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred -------------------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 1124678999999999999999987765556 88877773
No 26
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.01 E-value=0.0001 Score=82.66 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=107.8
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
|.-.+||||+|.+.-. ..++.+++.++..++.++. ..+.+||+|+|++..++.- ++.+
T Consensus 1 ~~div~vlD~SgSM~~-~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~------ 59 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGA-SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE------ 59 (497)
T ss_dssp CEEEEEEEECSTTTCH-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTS------
T ss_pred CeeEEEEEECCCCcch-hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee--------------cccc------
Confidence 3458999999986432 3478888888888876543 2234999999998765421 1111
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCCCccc
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGPGALQ 273 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----------~GGrI~~F~~g~pt~GpG~l~ 273 (713)
+....++.+.+.|+.|.... ......+.+|.||..|..++.. ....|+++++|.++.|....
T Consensus 60 -----~~~~~~~~~~~~l~~l~~~~-~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~- 132 (497)
T 1rrk_A 60 -----ADSSNADWVTKQLNEINYED-HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI- 132 (497)
T ss_dssp -----GGGGCHHHHHHHHHHCCGGG-SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTH-
T ss_pred -----ccccCHHHHHHHHHhCcCcc-ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChh-
Confidence 12233566677788886321 1134578999999999999842 22468889999988764111
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHH---------HHhhCCeEEEEEEecCCccCchhhcccccCCCc--eEEEeCCC
Q psy16627 274 SRENPNQRSNDDPPHMNPATDFYKKIAL---------ECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHIPLY 342 (713)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~a~~fY~~La~---------~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG--~v~~y~~f 342 (713)
...+.+.. .+.+.||.|..+.+. +..+..+|..++..+|| .++..+++
T Consensus 133 --------------------~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~~ 191 (497)
T 1rrk_A 133 --------------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDM 191 (497)
T ss_dssp --------------------HHHHHHHHHTTCSSCC-CCCGGGEEEEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTCH
T ss_pred --------------------HHHHHHHHHhhhhcccccchhcCeeEEEecCC-CccCHHHHHHHhcCCCCcceEEEeCCH
Confidence 01111111 122347766666554 34788999999999999 77777654
Q ss_pred C
Q psy16627 343 S 343 (713)
Q Consensus 343 ~ 343 (713)
.
T Consensus 192 ~ 192 (497)
T 1rrk_A 192 E 192 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.85 E-value=0.00033 Score=67.39 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=100.1
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 205 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~ 205 (713)
|.-.+||||.|.+--. .-++.+++.++..++.+.+ ..++||+|+|++.++.. .|+ .
T Consensus 2 ~~divfvlD~S~Sm~~-~~~~~~k~~~~~~~~~l~~-~~~rv~vv~fs~~~~~~---------------------~~l-~ 57 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQP-DEFQKILDFMKDVMKKCSN-TSYQFAAVQFSTSYKTE---------------------FDF-S 57 (179)
T ss_dssp CEEEEEEEECBTTCCH-HHHHHHHHHHHHHHHHTTT-SSEEEEEEEESSSEEEE---------------------ECH-H
T ss_pred CccEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHhCC-CCeEEEEEEECCceeEE---------------------EcC-c
Confidence 5668999999976332 2367888999888888832 34599999999977541 010 0
Q ss_pred CcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH-hhcC-CCC------EEEEEecCCCCCCCCcccCCCC
Q psy16627 206 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TGG------RITIFQTCLPNRGPGALQSREN 277 (713)
Q Consensus 206 ~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~GG------rI~~F~~g~pt~GpG~l~~~~~ 277 (713)
. ...++.+..+++.|... ...+.+|.||..|.. ++.. .|+ .|++++.|.++.|.- .
T Consensus 58 ~-----~~~~~~~~~~~~~i~~~-----~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-~----- 121 (179)
T 1mjn_A 58 D-----YVKRKDPDALLKHVKHM-----LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-I----- 121 (179)
T ss_dssp H-----HHHHCCHHHHHTTCCCC-----CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-C-----
T ss_pred c-----cCCHHHHHHHHHhcccC-----CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-h-----
Confidence 0 01122345667777542 246899999999985 6553 233 488889998775420 0
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccC----chhhcccccCCCc-eEEEeCCCCC
Q psy16627 278 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD----LATLSGVSKFSSG-CIHHIPLYSG 344 (713)
Q Consensus 278 ~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~----l~~l~~l~~~TGG-~v~~y~~f~~ 344 (713)
+ ...|+.|-.+.+..+ .+ ..+|..++..+|| .++..++|..
T Consensus 122 -------------~------------~~~~i~i~~igvG~~-~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 122 -------------D------------AAKDIIRYIIGIGKH-FQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp -------------G------------GGTTSEEEEEEESGG-GCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred -------------H------------HHCCCEEEEEEcccc-ccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 0 235776655555433 33 4789999999987 5788888774
No 28
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.65 E-value=9.3e-05 Score=84.56 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=87.4
Q ss_pred cEEEEEEEcchhHHhh-----chHHHHHHHHHHHhhc---CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCc
Q psy16627 127 AMYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKS---MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 198 (713)
Q Consensus 127 p~~vFvID~s~~a~~s-----g~l~~~~~sl~~~L~~---lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d 198 (713)
=..+|+||+|.+..+. ..|+.+++++...++. ..++. +||||+|++.-.--.+.....-....+
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D--~vGlv~f~~~~~~~plt~d~~y~~i~v------ 79 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKD--EIALVLFGTDGTDNPLSGGDQYQNITV------ 79 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCC--EEEEEEESCSSCBSTTCTTTCSTTEEE------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCC--EEEEEEEccCCCCCccccccCCCceEE------
Confidence 4689999999865431 3688899999888873 33344 899999987632100100000001111
Q ss_pred cCCCCCCCcceehhh-hHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCC------C-CEEEEEecCCCCCCCC
Q psy16627 199 IFLPSPENILVNLSE-CYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT------G-GRITIFQTCLPNRGPG 270 (713)
Q Consensus 199 ~f~P~~~~~l~~l~e-~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~------G-GrI~~F~~g~pt~GpG 270 (713)
+.++.. ....+..+-+.|. ......++|.||.+|..+++.. + -||++|+.|--+.|..
T Consensus 80 ---------l~~l~~~~~~~l~~l~~~l~-----~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~ 145 (565)
T 1jey_B 80 ---------HRHLMLPDFDLLEDIESKIQ-----PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKS 145 (565)
T ss_dssp ---------EEEEECCCHHHHHHHHTTCC-----CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCT
T ss_pred ---------eecCCCCCHHHHHHHHhhcc-----CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHH
Confidence 222221 1123333222242 1124678999999999999642 2 3799999886554311
Q ss_pred cccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEE-EEEecC
Q psy16627 271 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVD-LFILNS 317 (713)
Q Consensus 271 ~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvD-lf~~~~ 317 (713)
-..++|..+.+.||.|+ ++.+..
T Consensus 146 ------------------------~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 146 ------------------------QLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp ------------------------THHHHHHHHHHTTEEEEEEESSCC
T ss_pred ------------------------HHHHHHHHHHhcCcEEEEEeccCC
Confidence 12678999999999999 665443
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.63 E-value=0.00037 Score=82.04 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=110.6
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCC
Q psy16627 123 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~ 201 (713)
+..+.-++||||.|.+.... -++.++++++..++.+.. ..+.+||||+|++.+.+. +
T Consensus 240 ~~~~~div~vlD~SgSM~~~-~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~---------------------~ 297 (741)
T 3hrz_D 240 PSGSMNIYLVLDGSGSIGAS-DFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIW---------------------V 297 (741)
T ss_dssp TTCEEEEEEEEECSTTTCHH-HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEE---------------------E
T ss_pred CCCceeEEEEeccCCccccc-chHHHHHHHHHHHHhhhccCCCceEEEEEeccCCcee---------------------E
Confidence 34467799999999764322 277888888888877764 234599999999865431 1
Q ss_pred CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcC-----CCC------EEEEEecCCCCCCCC
Q psy16627 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGG------RITIFQTCLPNRGPG 270 (713)
Q Consensus 202 P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GG------rI~~F~~g~pt~GpG 270 (713)
|+.. + -...++.+.+.|+.|+... ......+.+|.||..|...|.. .++ .|+++++|.+|.|..
T Consensus 298 ~l~~-~---~~~~~~~~~~~i~~l~~~~-~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~ 372 (741)
T 3hrz_D 298 KVSE-A---DSSNADWVTKQLNEINYED-HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD 372 (741)
T ss_dssp CTTS-G---GGGCHHHHHHHHTTCCGGG-GSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSC
T ss_pred eecc-c---CCcCHHHHHHHHHhccccc-ccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCC
Confidence 1100 0 0123455667777775211 1135678999999999998831 222 488999999987642
Q ss_pred cccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCce--EEEeCCCC
Q psy16627 271 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGC--IHHIPLYS 343 (713)
Q Consensus 271 ~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~--v~~y~~f~ 343 (713)
-....++ . .........|+++.+.||.|..+.+.. .++-.+|..++..+||. ++..++++
T Consensus 373 p~~~~~~-i-----------~~~~~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 373 PITVIDE-I-----------RDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp THHHHHH-H-----------HHHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSHH
T ss_pred chHHHHH-H-----------HHHhhcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 1100000 0 000000112334556677666665543 47889999999999995 77666654
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.58 E-value=0.0021 Score=62.83 Aligned_cols=153 Identities=10% Similarity=0.079 Sum_probs=95.3
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
..|--.+|+||.|.+.-. .-++.+++.++..++.+.- ....+||+|+|++.++..- ++.+
T Consensus 19 ~~~~DivfvlD~S~Sm~~-~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~--------------~l~~---- 79 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGE-ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY--------------PFSE---- 79 (199)
T ss_dssp CCCCEEEEEEECCTTTCH-HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEE--------------CTTS----
T ss_pred CCCcCEEEEEECCCCCCH-HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEE--------------ecCC----
Confidence 346679999999976332 2367889999999988842 1245999999999876421 0100
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhh-cC-CCC------EEEEEecCCCCCCCCcccC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-QP-TGG------RITIFQTCLPNRGPGALQS 274 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~~-~GG------rI~~F~~g~pt~GpG~l~~ 274 (713)
+ ..++.+.+.++.++.. ....+.+|.||..|...+ .. .|+ .|+++++|.++-
T Consensus 80 ----~-----~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d------- 139 (199)
T 3zqk_A 80 ----A-----QSKGDILQRLREIRYQ----GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASD------- 139 (199)
T ss_dssp ----C-----CCHHHHHHHHHHCCCC----CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSS-------
T ss_pred ----c-----CCHHHHHHHHHhCcCC----CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCch-------
Confidence 0 1234455666776421 122588999999999843 32 333 377777775321
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecC-CccCchhhcccccCCCceEEEeCCCCC
Q psy16627 275 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNS-QYVDLATLSGVSKFSSGCIHHIPLYSG 344 (713)
Q Consensus 275 ~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~-~~~~l~~l~~l~~~TGG~v~~y~~f~~ 344 (713)
+ ..-. ..|+ .+|++.- +..+..+|..++. +|..++.++|+.
T Consensus 140 --~--------v~~~---------------~~~v--~v~~iGiG~~~~~~~L~~iA~--~~~~~~~~~~~~ 181 (199)
T 3zqk_A 140 --E--------IKRL---------------PGDI--QVVPIGVGPNANVQELERIGW--PNAPILIQDFET 181 (199)
T ss_dssp --C--------CCCC---------------CTTE--EEEEEEESTTCCHHHHHHHHT--TSCCEEESCTTT
T ss_pred --H--------HHHH---------------hCCC--EEEEEEcCCCCCHHHHHHHhC--CCceEEeCCHHH
Confidence 0 0000 1455 4555543 3688899999997 556667888874
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.58 E-value=0.00077 Score=64.64 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=90.3
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 203 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~ 203 (713)
.+.-.+||||+|.+.-. .-++.+++.+...++.++.. ...+||+|+|++.++.. .|+
T Consensus 16 ~~~divfvlD~SgSm~~-~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~---------------------~~l 73 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGI-QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQ---------------------WDL 73 (178)
T ss_dssp TCEEEEEEEECCTTTCH-HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE---------------------ECT
T ss_pred CCeeEEEEEECCCCCCH-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEE---------------------EeC
Confidence 36789999999986422 23788899999999888632 34699999999887531 011
Q ss_pred CCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhc-C-CC------CEEEEEecCCCCCCCCcccCC
Q psy16627 204 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ-P-TG------GRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 204 ~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~-~-~G------GrI~~F~~g~pt~GpG~l~~~ 275 (713)
. .+- ...++.+...++.++. ....+.+|.||..|...+. . .| ..|++++.|.++.|.
T Consensus 74 ~-~~~---~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~------ 138 (178)
T 2xgg_A 74 Q-SPN---AVDKQLAAHAVLDMPY-----KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDF------ 138 (178)
T ss_dssp T-SGG---GSCHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHH------
T ss_pred C-CCC---ccCHHHHHHHHHhCCC-----CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCc------
Confidence 0 000 0134555666777752 2347899999999999762 2 22 368888888766431
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhh
Q psy16627 276 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATL 325 (713)
Q Consensus 276 ~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l 325 (713)
-..+.+.++.+.||.|..+.+.. .+|-..|
T Consensus 139 -------------------~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 139 -------------------RTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp -------------------HHSHHHHHHHHTTCEEEEEECC---------
T ss_pred -------------------cHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 12467777888898777776643 3444433
No 32
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.48 E-value=0.00057 Score=59.92 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=59.9
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcccc
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 644 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 644 (713)
.|+||.++.- . ...-..++++.++|.++.+|+||+|..||+|+|+.++..-
T Consensus 2 ~~rL~~v~g~---~--------~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~E------------------ 52 (104)
T 1kcq_A 2 VQRLFQVKGR---R--------VVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYE------------------ 52 (104)
T ss_dssp CCEEEEEEES---S--------SEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHH------------------
T ss_pred CcEEEEEECC---C--------cEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHH------------------
Confidence 3788888731 0 1122335689999999999999999999999999887643
Q ss_pred CCCCCchHHhHHHHHHHHHHhh-cCCCcCcEEEEeCCCCcHHHHHHhh
Q psy16627 645 ELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSPDRMEFYDKL 691 (713)
Q Consensus 645 ~lp~~d~~~s~~l~~~i~~l~~-~r~~~~p~~iv~~~~~~~~~f~~~L 691 (713)
-.+...+.+.+++ .|....++.+|.++... ..|...|
T Consensus 53 ---------k~~A~~~a~~i~~~er~~~~~i~~v~eG~E~-~~Fw~~L 90 (104)
T 1kcq_A 53 ---------RLKATQVSKGIRDNERSGRARVHVSEEGTEP-EAMLQVL 90 (104)
T ss_dssp ---------HHHHHHHHHHHHHHTSTTCSEEEEEETTCCC-HHHHHHH
T ss_pred ---------HHHHHHHHHHHHhhccCCCCcEEEEeCCCCC-HHHHHHc
Confidence 2233344444543 34445788999888744 4676655
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.38 E-value=0.00043 Score=84.82 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=106.1
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEE-EcCCCCCCCeeeeecCcCccCCCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSP 204 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y-~l~~~~~~~q~~vv~dl~d~f~P~~ 204 (713)
+.-.+||||.|.+.- ..-++.+++.++..++.+..+ +++||+|+|++.+++. .+.. ..+.+
T Consensus 130 ~~DIvfvlD~SgSm~-~~~f~~~k~fv~~lv~~~~~~-~~rVglV~Fs~~~~~~~~lt~---------~~~~~------- 191 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSIS-SRNFATMMNFVRAVISQFQRP-STQFSLMQFSNKFQTHFTFEE---------FRRSS------- 191 (1095)
T ss_dssp CEEEEEEEECCTTSC-SHHHHHHHHHHHHHHHSSCSS-SEEEEEEEESSSEEEEECSHH---------HHSCS-------
T ss_pred CccEEEEEcCCCCCC-hhHHHHHHHHHHHHHHhcccc-ccEEEEEEECCeEEEEecCcc---------cCCHH-------
Confidence 566899999997633 233788999999999998753 4699999999886642 1110 00100
Q ss_pred CCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhh-c-CCCC------EEEEEecCCCCCCCCcccCCC
Q psy16627 205 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-Q-PTGG------RITIFQTCLPNRGPGALQSRE 276 (713)
Q Consensus 205 ~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~-~~GG------rI~~F~~g~pt~GpG~l~~~~ 276 (713)
.+..+++.|+. ....+.+|.||..|...+ . ..|+ .|+++++|.++..+.
T Consensus 192 ------------~l~~ai~~i~~-----~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~------ 248 (1095)
T 3k6s_A 192 ------------NPLSLLASVHQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL------ 248 (1095)
T ss_dssp ------------CGGGGTTTCCC-----CCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS------
T ss_pred ------------HHHHHHhhhhc-----ccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch------
Confidence 01122333432 134689999999998844 3 2344 477888887642211
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCc---cCchhhcccccCCCc-eEEEeCCCCC
Q psy16627 277 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSG-CIHHIPLYSG 344 (713)
Q Consensus 277 ~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~---~~l~~l~~l~~~TGG-~v~~y~~f~~ 344 (713)
-+.+.+.++.+.||.|-.+.+..++ .+..+|..++..++| +++..++|+.
T Consensus 249 ------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 249 ------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp ------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred ------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 1356777788888876666665542 689999999999887 7777787764
No 34
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=97.25 E-value=0.00076 Score=73.36 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=61.6
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCccc
Q psy16627 564 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETL 643 (713)
Q Consensus 564 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~ 643 (713)
..|+||.+++- .|.... ....+++.+.|.++.+||||+|..||||+|+.+++.-.+
T Consensus 281 ~~~rLf~~s~~--~G~~~v-------~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~--------------- 336 (398)
T 3fg7_A 281 ITPRLFECSNK--TGRFLA-------TEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKK--------------- 336 (398)
T ss_dssp CCCEEEEEECT--TSSCEE-------EECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHH---------------
T ss_pred ccCeeEEEEcC--CCCEEE-------EEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHH---------------
Confidence 47999998741 111111 111248889999999999999999999999988865321
Q ss_pred cCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhc---ccCCCCCCCHHHH
Q psy16627 644 FELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLI---EDKNAGGMAYYEF 705 (713)
Q Consensus 644 ~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~Lv---ED~~~~~~SY~df 705 (713)
..-.....+|+.....|+-..|+.+|.++.... .|.+.+- .++..+..||.+.
T Consensus 337 --------~Al~~A~~yi~~~~~~r~~~tpi~~V~eG~Ep~-~Fk~~F~~Wd~~~~~~~~~~~~~ 392 (398)
T 3fg7_A 337 --------AAATTAQEYLKTHPSGRDPETPIIVVKQGHEPP-TFTGWFLAWDPFKWSGIHVVPNL 392 (398)
T ss_dssp --------HHHHHHHHHHHHSSSSCCTTCCEEEEETTCCCH-HHHTTSSCCCTTCC---------
T ss_pred --------HHHHHHHHHHHhCcccCCCCCCEEEEcCCCCCH-HHHHhhhcCChhhhcccCCHHHh
Confidence 011122233333322444457999999886433 5665553 2344566888775
No 35
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.08 E-value=0.00095 Score=59.53 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=58.4
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcccc
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 644 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 644 (713)
.|+||.+..- . + ..-..++++.++|.++.+||||+|..||+|+|+..+..-
T Consensus 12 ~~rL~~v~G~--~-----~----~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~E------------------ 62 (114)
T 1svq_A 12 KPRLLHISGD--K-----N----AKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQE------------------ 62 (114)
T ss_dssp CEEEEEEECT--T-----S----CEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHH------------------
T ss_pred CcEEEEEECC--C-----c----EEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHH------------------
Confidence 5799998731 0 1 112235689999999999999999999999999887543
Q ss_pred CCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCC-cHHHHHHhh
Q psy16627 645 ELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP-DRMEFYDKL 691 (713)
Q Consensus 645 ~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~-~~~~f~~~L 691 (713)
-.+.+.+.+.+...|.....+.++.++.. ....|...|
T Consensus 63 ---------k~~A~~~a~~i~~er~g~~~i~vv~eg~~~E~~~Fw~~L 101 (114)
T 1svq_A 63 ---------KNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLL 101 (114)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCSEEEECCCCTTCCCHHHHHHH
T ss_pred ---------HHHHHHHHHHhhhccCCCccEEEEeCCCcCCcHHHHHHc
Confidence 12333333344433333357888887763 334675555
No 36
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=96.76 E-value=0.0026 Score=67.94 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCccc
Q psy16627 564 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETL 643 (713)
Q Consensus 564 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~ 643 (713)
..|+||.+++- .|..... ++ + -+++.+.|.++.+||||+|..||||+|+.+++.-.+.
T Consensus 227 ~~~rLf~~s~~--~G~~~v~--ev--~--~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~-------------- 284 (344)
T 2fh1_A 227 HPPRLFACSNK--IGRFVIE--EV--P--GELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE-------------- 284 (344)
T ss_dssp CCCEEEEEECT--TSSCEEE--EE--C--SSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHH--------------
T ss_pred cCCEEEEEEcC--CCCEEEE--Ec--c--CCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH--------------
Confidence 57999998741 2211111 11 1 1578899999999999999999999999988654211
Q ss_pred cCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhcc--cCCCCCCCHHHHHHH
Q psy16627 644 FELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIE--DKNAGGMAYYEFLLR 708 (713)
Q Consensus 644 ~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvE--D~~~~~~SY~dfL~~ 708 (713)
.-.....+++.....|+-..|+.+|.++.... .|.+++-. |..-..-||.+.+..
T Consensus 285 ---------A~~~A~~y~~~~~~~r~~~t~i~~V~eG~Ep~-~Fk~~F~~W~~~~~~~~~~~~~~~~ 341 (344)
T 2fh1_A 285 ---------ALTSAKRYIETDPANRDRRTPITVVKQGFEPP-SFVGWFLGWDDDYWSVDPLDRAMAE 341 (344)
T ss_dssp ---------HHHHHHHHHHTC-------CCEEEEETTCCCH-HHHTTSSSCCTTCC-----------
T ss_pred ---------HHHHHHHHHHhCccCCCCCCcEEEEcCCCCCH-HHHHHHhhcChhhcCCChHHHHHHH
Confidence 11112223322222455567999999986443 56655532 222222466665544
No 37
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.53 E-value=0.025 Score=65.03 Aligned_cols=149 Identities=18% Similarity=0.202 Sum_probs=90.1
Q ss_pred cEEEEEEEcchhHHhh------chHHHHHHHHHHHhhc----CCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCc
Q psy16627 127 AMYLFLLDVSQIAAQS------GYLYTVCEVLLNQLKS----MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDI 196 (713)
Q Consensus 127 p~~vFvID~s~~a~~s------g~l~~~~~sl~~~L~~----lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl 196 (713)
=..+|+||+|.+..+. ..|+.+++.+...++. .+.+ +||||.|++.-. .+...-...++..++
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D---~vGlVlfgt~~t----~n~l~~d~i~v~~~L 108 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRD---LLAVVFYGTEKD----KNSVNFKNIYVLQEL 108 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCC---EEEEEEESCSSC----BSTTCCTTEEEEEEE
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC---eEEEEEEccCCC----CCcCCCCCeEEEecC
Confidence 4589999999865432 2688888888888864 4543 899999988742 111111122332222
Q ss_pred CccCCCCCCCcceehhhhHHHHHHHHhhCc---------ccccCCCCCCCchHHHHHHHHHhhcCC-----CCEEEEEec
Q psy16627 197 DDIFLPSPENILVNLSECYDMIVDLLKQLP---------GKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQT 262 (713)
Q Consensus 197 ~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~---------~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~ 262 (713)
+.+ . .+.+.. |+.+. ...+ .....++|.||.+|+.+++.. .=||++||+
T Consensus 109 ~~~---~-----------~~~ik~-l~~l~~~~~~~~~~~~~g--~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TD 171 (609)
T 1jey_A 109 DNP---G-----------AKRILE-LDQFKGQQGQKRFQDMMG--HGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTN 171 (609)
T ss_dssp ECC---C-----------HHHHHH-HHTTSHHHHHHHHHHHHC--CSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEES
T ss_pred CCC---C-----------HHHHHH-HHHHhhcccchhhhhhcC--CCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcC
Confidence 211 0 111111 11221 1111 135689999999999999764 248899998
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCC
Q psy16627 263 CLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 318 (713)
Q Consensus 263 g~pt~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~ 318 (713)
|--+.|.. .....-....|..+.+.||.|.+|.++.+
T Consensus 172 g~~p~~~~-------------------~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 172 EDNPHGND-------------------SAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp CSCTTTTC-------------------HHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CCCCCCCc-------------------hHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 75443210 01112346789999999999999988654
No 38
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=96.49 E-value=0.0028 Score=68.30 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=39.5
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhH
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 626 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~ 626 (713)
.|+||..++- .|..... ++ + -+++.+.|.++.+||||+|..||||+|+.+++.-
T Consensus 269 ~~rLf~~s~~--~G~~~v~--ev--~--~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~E 322 (371)
T 3fg6_A 269 PPRLYGCSNK--TGRFVIE--EI--P--GEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVE 322 (371)
T ss_dssp CCEEEEEECT--TSSCEEE--EC--C--SSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHH
T ss_pred CcEEEEEEcC--CCcEEEE--Ee--c--ccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHH
Confidence 5899988741 1211111 12 1 1488899999999999999999999999988764
No 39
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=95.95 E-value=0.014 Score=68.44 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=61.3
Q ss_pred hhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCc
Q psy16627 562 LSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPE 641 (713)
Q Consensus 562 ~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~ 641 (713)
....|+||.+++- .|..... ++. -+++.+.|.++.|||||+|..||||+|+.++..-.+.
T Consensus 610 ~~~~~rLf~~s~~--~G~~~v~--ev~----~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er~~------------ 669 (729)
T 1d0n_A 610 DAHPPRLFACSNK--IGRFVIE--EVP----GEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTE------------ 669 (729)
T ss_dssp HHSCCEEEEEECT--TTCCEEE--ECC----SSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHHSS------------
T ss_pred cccCCeEEEEEcC--CCcEEEE--Eec----CcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH------------
Confidence 3568999999841 1211111 111 1478899999999999999999999999887654210
Q ss_pred cccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhh
Q psy16627 642 TLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKL 691 (713)
Q Consensus 642 ~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~L 691 (713)
.-+.....+......|+...|+.+|.++.... .|.+++
T Consensus 670 -----------al~~A~~Y~~~~~~~r~~~~pi~~V~~G~Ep~-~F~~~F 707 (729)
T 1d0n_A 670 -----------ALTSAKRYIDTDPAHRDRRTPITVVKQGFEPP-SFVGWF 707 (729)
T ss_dssp -----------HHHHHHHHHHHCTTCCCTTCCEEEEETTCCCH-HHHTTC
T ss_pred -----------HHHHHHHHHHhCcccCCCCCcEEEEeCCCCCH-HHHhhh
Confidence 00112233333323455558999999986543 455544
No 40
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.62 E-value=0.03 Score=59.72 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=55.4
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCC--ceEEEEecCCCChhHHhhccCCCCCCCCCc
Q psy16627 564 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMP--DLIIILVRHGTSPAICSGLFGFQSVAQMPE 641 (713)
Q Consensus 564 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g--~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~ 641 (713)
-.|+||.+++- .|..... ++ +..-+++.+.|.++.+||||+| ..||||+|+.+++.-.+
T Consensus 246 ~~~rLy~vs~~--~G~~~v~--ev--~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~------------- 306 (347)
T 1j72_A 246 QAAALYKVSDA--TGQMNLT--KV--ADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQ------------- 306 (347)
T ss_dssp CCCEEEEEECT--TSSCEEE--EE--ECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHH-------------
T ss_pred cCCEEEEEECC--CCCEEEE--ee--ccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHH-------------
Confidence 36999999741 1211111 01 1112589999999999999999 99999999998865421
Q ss_pred cccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCC
Q psy16627 642 TLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP 682 (713)
Q Consensus 642 ~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~ 682 (713)
..-+....++.. ..|+-..|+.+|.++..
T Consensus 307 ----------~A~~~A~~y~~~--~~rp~~~~i~~v~eG~E 335 (347)
T 1j72_A 307 ----------AALQVAEGFISR--MQYAPNTQVEILPQGRE 335 (347)
T ss_dssp ----------HHHHHHHHHHHH--HTCCTTCEEEEEETTCC
T ss_pred ----------HHHHHHHHHHHh--cCCCCCCeEEEEcCCCC
Confidence 011112222322 24555689999999864
No 41
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.52 E-value=0.037 Score=66.12 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCCcEEEEEEEcchhHHhhc-----hHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEE---EEcCCCCCCCeeeeecC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSG-----YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHF---YSLAEGQTQPSQMILTD 195 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg-----~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~---y~l~~~~~~~q~~vv~d 195 (713)
..|--.+||||+|.+..... .++.++++++..++.|....+.+||||+|++.+.. ..+..+..........+
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~ 301 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLND 301 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECC
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccccc
Confidence 45778999999998754332 36778888888887764433449999999986532 01100000000000000
Q ss_pred -----cCc-cCCCCCCCc-ceehhhhHHHHHHHHhhCccccc-------CCCCCCCchHHHHHHHHHhhcC-C--C--CE
Q psy16627 196 -----IDD-IFLPSPENI-LVNLSECYDMIVDLLKQLPGKFK-------DSLDSGSALGPALQAAFKLLQP-T--G--GR 256 (713)
Q Consensus 196 -----l~d-~f~P~~~~~-l~~l~e~~~~i~~lL~~L~~~~~-------~~~~~~~~~G~AL~~A~~ll~~-~--G--Gr 256 (713)
.+. +|......| .+|+....+.|..+...|+..-. -.....+.+|.||..|..+|+. . + ..
T Consensus 302 ~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kv 381 (893)
T 2ww8_A 302 SLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKV 381 (893)
T ss_dssp CTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEE
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeE
Confidence 000 000000111 23454445455555555543111 0124578999999999999963 1 2 35
Q ss_pred EEEEecCCCCCCC
Q psy16627 257 ITIFQTCLPNRGP 269 (713)
Q Consensus 257 I~~F~~g~pt~Gp 269 (713)
|++++.|.|+.+.
T Consensus 382 IILLTDG~pt~~~ 394 (893)
T 2ww8_A 382 IFHITDGVPTMSY 394 (893)
T ss_dssp EEEEESSCCSEEC
T ss_pred EEEEcCCCCCccc
Confidence 7888899999653
No 42
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.15 E-value=0.099 Score=59.08 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCCCcEEEEEEEcchhHHhh--c-hHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCcc
Q psy16627 123 PPQPAMYLFLLDVSQIAAQS--G-YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 199 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~s--g-~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~ 199 (713)
++.+..++|+||+|.+.... | .+.....++...+..+..+. +||+|+|++.+..
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d--~vglv~Fs~~~~~--------------------- 421 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEK--DSHMVAFSDEMLP--------------------- 421 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCS--SEEEEEESSSEEC---------------------
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCC--ceEEEEECCCceE---------------------
Confidence 45678899999999874321 1 12332222222232233334 7999999863210
Q ss_pred CCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCC
Q psy16627 200 FLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRG 268 (713)
Q Consensus 200 f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~G 268 (713)
+|...+ .. +..+++.|... ...++.+|.||..|... ......|+++++|..+.|
T Consensus 422 -~~~t~~------~~---l~~~l~~l~~~----~~GgT~i~~aL~~a~~~-~~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 422 -CPITVN------ML---LHEVVEKMSDI----TMGSTDCALPMLWAQKT-NTAADIFIVFTDCETNVE 475 (538)
T ss_dssp -CSCCTT------SC---HHHHHHHHTTC----CCSCCCTTHHHHHHHHT-TCCCSEEEEEECCCCCSS
T ss_pred -cCCCCc------cc---HHHHHHHHhcC----CCCCCcHHHHHHHHHhc-cCCCCEEEEEcCCCCCCC
Confidence 121111 01 33445555432 23467889999999876 334578999999987664
No 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=94.01 E-value=2.3 Score=49.11 Aligned_cols=266 Identities=14% Similarity=0.163 Sum_probs=133.9
Q ss_pred CCcEEEEEEEcchhHHhhchHHHH---HHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCc-CccC
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTV---CEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDI-DDIF 200 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~---~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl-~d~f 200 (713)
.|-=.+|++|+|.+..+ .++.+ ...|.+.|..+-.+. ||||..|-...- +......| .++ +.|-
T Consensus 110 ~pvDly~LmD~S~SM~d--di~~lk~l~~~l~~~l~~~t~~~--r~Gfgsf~Dk~~---~P~~~~~p-----~~~~~~pc 177 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKD--DLWSIQNLGTKLATQMRKLTSNL--RIGFGAFVDKPV---SPYMYISP-----PEALENPC 177 (690)
T ss_dssp CCEEEEEEEECSGGGHH--HHHHTTTTTHHHHHHHHHHCSCE--EEEEEEECCCSS---TTTSCCCS-----TTTTTCTT
T ss_pred CCccEEEEecCCcchHH--HHHHHHHHHHHHHHHHHhhCcCc--eEEeEEeecccc---CCccccCh-----hhhccCCC
Confidence 36778999999986443 24444 445555555555555 999999965432 11100011 111 1110
Q ss_pred -------CC-CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHH--Hhhc--CCCCEEEEEecCCCC--
Q psy16627 201 -------LP-SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ--PTGGRITIFQTCLPN-- 266 (713)
Q Consensus 201 -------~P-~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~--~~GGrI~~F~~g~pt-- 266 (713)
.| ..-+-.+++.+....+.+.++.+. ...+...|...+-+.+++|+ .-++ ...-||+||++-.+-
T Consensus 178 ~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~-isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 178 YDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (690)
T ss_dssp SSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred cCCCCCCCCCccceeecccCCCHHHHHHHhhcee-ccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCcccc
Confidence 11 111224577766666666676654 22334456666766667764 3443 234699999888875
Q ss_pred CCCCcccCCCCCCC-CCC-CCCCCCcchHHH----HHHHHHHHhhCCeEEEEEEecCCccCchhhccccc-CCCceEEEe
Q psy16627 267 RGPGALQSRENPNQ-RSN-DDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSK-FSSGCIHHI 339 (713)
Q Consensus 267 ~GpG~l~~~~~~~~-~s~-~~~~~~~~a~~f----Y~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~-~TGG~v~~y 339 (713)
.|-|++...-.++. .-| +....+..+..+ -.+|+..+++++|. =||+.+....++.+ .|++ .+|+.+-..
T Consensus 257 agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~-~ifavt~~~~~~y~--~l~~~i~~s~v~~l 333 (690)
T 3fcs_B 257 ALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNIN-LIFAVTENVVNLYQ--NYSELIPGTTVGVL 333 (690)
T ss_dssp TTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCE-EEEEEEGGGHHHHH--HHHHHSTTCEEEEE
T ss_pred CCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCe-EEEEEeCCchhhHH--HHHhhcCCceeeee
Confidence 47777654433322 112 111122222221 36788888888884 47777666554432 3333 345555444
Q ss_pred CCCCCCcchhHHHHHHHHHHhhccccccceEEEEEe-cCCceEEEEecCccccC--CCceeecCCCCCCeEEEEEEeec
Q psy16627 340 PLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TDLLALPNVNPDAGYGIQISIDE 415 (713)
Q Consensus 340 ~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~-S~gl~v~~~~G~~~~~~--t~~~~l~~i~~~~s~~~~f~~~~ 415 (713)
.. +. .....+..+-++.+ .-..+|++.. +++++|+-. -.+..+. +..-.-.++....++.|.+++.-
T Consensus 334 ~~-dS---sni~~li~~~y~~i----~s~v~l~~~~~p~~~~v~~~-s~C~~~~~~~~~~~C~~v~~g~~v~F~v~v~~ 403 (690)
T 3fcs_B 334 SM-DS---SNVLQLIVDAYGKI----RSKVELEVRDLPEELSLSFN-ATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKV 403 (690)
T ss_dssp CT-TC---TTHHHHHHHHHHHH----TTCEEEEEESCCTTEEEEEE-EECSTTCEEETCCEECSCCTTCEEEEEEEEEE
T ss_pred cc-cc---HHHHHHHHHHHHhh----hcceeeeccCCCCcceEEEE-eecCCCCcccCCCcccccccCCeEEEEEEEEe
Confidence 32 22 12344444443333 2344555443 556655432 1111000 01113445666677777776653
No 44
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=93.70 E-value=0.2 Score=53.24 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=59.0
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcccc
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 644 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 644 (713)
.|+||.+..- . + ..-..++++.++|.++.+|+||+|..||+|+|+..+..-
T Consensus 135 ~~rL~~v~G~---~----~----v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~E------------------ 185 (347)
T 1j72_A 135 VQRLYQVKGK---K----N----IRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILE------------------ 185 (347)
T ss_dssp EEEEEEEECS---S----S----CEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHH------------------
T ss_pred CcEEEEEECC---C----c----eEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCHHH------------------
Confidence 4789988731 0 0 112235688999999999999999999999999877654
Q ss_pred CCCCCchHHhHHHHHHHHHHhh-cCCCcCcEEEEeCCCCcHHHHHHhh
Q psy16627 645 ELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSPDRMEFYDKL 691 (713)
Q Consensus 645 ~lp~~d~~~s~~l~~~i~~l~~-~r~~~~p~~iv~~~~~~~~~f~~~L 691 (713)
-.+.+.+...|++ .|.-...+.++.++... ..|...|
T Consensus 186 ---------r~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~-~~Fw~~L 223 (347)
T 1j72_A 186 ---------RNKARDLALAIRDSERQGKAQVEIVTDGEEP-AEMIQVL 223 (347)
T ss_dssp ---------HHHHHHHHHHHHTTSCCSSCEEEEEETTCCC-HHHHHHH
T ss_pred ---------HHHHHHHHHHHHhhccCCCceEEEEeCCCCH-HHHHHHh
Confidence 2233444555653 23233567777777644 4687766
No 45
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=92.19 E-value=0.34 Score=56.74 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=58.4
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCCcccc
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 644 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 644 (713)
.|+||.+..-. + ..-..++++.+||.++.+||||+|..||+|.|+..+..-
T Consensus 133 ~~rL~~vkG~~-------~----v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~~E------------------ 183 (729)
T 1d0n_A 133 VQRLLQVKGRR-------V----VRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFE------------------ 183 (729)
T ss_dssp CCEEEEEECSS-------S----CEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCHHH------------------
T ss_pred CcEEEEEECCC-------c----EEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCHHH------------------
Confidence 58999887210 0 122345689999999999999999999999999877543
Q ss_pred CCCCCchHHhHHHHHHHHHHhh-cCCCcCcEEEEeCCCCcHHHHHHhh
Q psy16627 645 ELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSPDRMEFYDKL 691 (713)
Q Consensus 645 ~lp~~d~~~s~~l~~~i~~l~~-~r~~~~p~~iv~~~~~~~~~f~~~L 691 (713)
-.+-+.+...|++ .|.....+.+|.++.. ...|...|
T Consensus 184 ---------r~kA~~~a~~i~~~er~g~~~i~~v~Eg~e-~~eFw~~L 221 (729)
T 1d0n_A 184 ---------RLKATQVSKGIRDNERSGRAQVSVFEEGAE-PEAMLQVL 221 (729)
T ss_dssp ---------HHHHHHHHHHHHHHSGGGCSEEEEEETTCC-CHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhhhcCCCccEEEecCCCC-hHHHHHHc
Confidence 2234445555553 3323356777776653 34776666
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=91.39 E-value=19 Score=39.36 Aligned_cols=268 Identities=14% Similarity=0.151 Sum_probs=135.6
Q ss_pred CCcEEEEEEEcchhHHhh-chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCe-EEEEEcCCCCCCCeeeeecCcCccC--
Q psy16627 125 QPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIF-- 200 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~s-g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~-V~~y~l~~~~~~~q~~vv~dl~d~f-- 200 (713)
.|-=.+|++|+|.+..+. .-++.+...|.+.|..+-.+. ||||..|-.. |.=| ....|.. ++..|-
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~--riGfgsFvDk~v~P~----~~~~p~~----~l~nPc~~ 179 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNL--RIGFGAFVDKPVSPY----MYISPPE----ALENPCYD 179 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCE--EEEEEEECCCSSTTT----SCCCSHH----HHHCTTTT
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCc--EEEEEEeeccccCcc----ccCChhh----hhcCCCcc
Confidence 467789999999864431 113344455555666655455 9999999543 2111 0000110 011110
Q ss_pred -----C-CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHH--Hhhc--CCCCEEEEEecCCCC--CC
Q psy16627 201 -----L-PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ--PTGGRITIFQTCLPN--RG 268 (713)
Q Consensus 201 -----~-P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~--~~GGrI~~F~~g~pt--~G 268 (713)
. |..-+..+++.+....+.+.+..+. ...+...|...+.+-+++|+ .-++ ...-|+++|++-.+- .|
T Consensus 180 ~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~ag 258 (472)
T 3t3p_B 180 MKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258 (472)
T ss_dssp TTSCCCCCCSEEEEEEEESCHHHHHHHHHHCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTT
T ss_pred cccCCCCCcceeEeeccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCC
Confidence 1 1111225677776666777777753 22344566777777777775 3343 234699999988875 58
Q ss_pred CCcccCCCCCCC-CCC-CCCCCCcchHHH----HHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCC-CceEEEeCC
Q psy16627 269 PGALQSRENPNQ-RSN-DDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS-SGCIHHIPL 341 (713)
Q Consensus 269 pG~l~~~~~~~~-~s~-~~~~~~~~a~~f----Y~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~T-GG~v~~y~~ 341 (713)
-|++.+--.|+. .-| +....+..+..+ ...|+..+.+++|.+ ||+.+....++. ..|++.- |+.+-....
T Consensus 259 DgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~L~~ 335 (472)
T 3t3p_B 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGTTVGVLSM 335 (472)
T ss_dssp GGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHHH--HHHHHTSTTCEEEECCT
T ss_pred CccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhHH--HHHHHhCCCceeeeccc
Confidence 887765433332 112 111112222211 356777778887644 888877655443 2333333 333333222
Q ss_pred CCCCcchhHHHHHHHHHHhhccccccceEEEEEe-cCCceEEEE--ecCccccCCCceeecCCCCCCeEEEEEEeec
Q psy16627 342 YSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTF--HGNFFVRSTDLLALPNVNPDAGYGIQISIDE 415 (713)
Q Consensus 342 f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~-S~gl~v~~~--~G~~~~~~t~~~~l~~i~~~~s~~~~f~~~~ 415 (713)
+.+ ..-.|.++-++.+ .-...|+... +++++|+-. -++... .+..-+..++....++.|..++.-
T Consensus 336 -dSs---Niv~LI~~aY~~i----~s~V~l~~~~~p~~l~v~y~s~C~~~~~-~~~~~~C~~v~ig~~v~F~v~v~~ 403 (472)
T 3t3p_B 336 -DSS---NVLQLIVDAYGKI----RSKVELEVRDLPEELSLSFNATCLNNEV-IPGLKSCMGLKIGDTVSFSIEAKV 403 (472)
T ss_dssp -TST---THHHHHHHHHHHH----TTCEEEEEESCCTTEEEEEEEEETTTEE-EETCCEECSCCTTCEEEEEEEEEE
T ss_pred -cch---hHHHHHHHHHHHh----heEEEEeeCCCCCcEEEEEEeECCCCCc-cCCCccCCCcccCCEEEEEEEEEe
Confidence 222 2344544444433 3344555443 456665421 112110 011123456666777777766653
No 47
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=91.22 E-value=0.26 Score=49.37 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=39.8
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC-CCceEEEEEEcCe
Q psy16627 125 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSA 175 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~-~~~~VglITF~~~ 175 (713)
.|.-++|+||+|.+.. +-++.++++++..+..++.. .+.+||+|+|+..
T Consensus 133 ~~~~vvfLVDtSgSM~--~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMR--DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGT--TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHH--HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 5778999999998754 45999999999999887632 3569999999864
No 48
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=90.71 E-value=0.78 Score=49.14 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.5
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCC-ceEEEEecCCCChh
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMP-DLIIILVRHGTSPA 625 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g-~~i~i~vG~~v~~~ 625 (713)
-|+||.+..-... + ..-..++++.++|.++.+||||+| ..||+|+|+..+..
T Consensus 165 ~~rL~~vrg~~~~-----~----vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~ 217 (371)
T 3fg6_A 165 PTRLFQVRRNLAS-----I----TRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE 217 (371)
T ss_dssp CCEEEEEECCSSS-----C----CEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHH
T ss_pred ccEEEEEeccCCC-----c----eEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHH
Confidence 5799999731100 0 111235688999999999999999 99999999987764
No 49
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=90.59 E-value=17 Score=39.44 Aligned_cols=267 Identities=15% Similarity=0.158 Sum_probs=135.3
Q ss_pred CCcEEEEEEEcchhHHhh-chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCe-EEEEEcCCCCCCCeeeeecCcCccC--
Q psy16627 125 QPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIF-- 200 (713)
Q Consensus 125 ~pp~~vFvID~s~~a~~s-g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~-V~~y~l~~~~~~~q~~vv~dl~d~f-- 200 (713)
.|-=..|++|+|.+..+. .-++.+...|.+.|..+-.+. ||||..|-.. |.=|.- ..|. .+..|-
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~--riGfGsFvDK~v~P~~~----t~p~-----~~~nPC~~ 189 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDF--RIGFGSFVEKTVMPYIS----TTPA-----KLRNPCTS 189 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSE--EEEEEEECCCSSTTTSC----CSTT-----TTTCCSCS
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCe--EEEEEEEeccccCCccc----CChH-----HhcCCCcC
Confidence 466789999999864431 124444555666666665555 9999999443 221100 0011 111110
Q ss_pred ----CC-CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH--hhc-CCCCEEEEEecCCCC--CCCC
Q psy16627 201 ----LP-SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LLQ-PTGGRITIFQTCLPN--RGPG 270 (713)
Q Consensus 201 ----~P-~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll~-~~GGrI~~F~~g~pt--~GpG 270 (713)
.| ..-+-.+++.+....+.+.++.+. ...+...|...+-+-+++|+. -++ ...-|+++|++-.+- .|-|
T Consensus 190 ~~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~-isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDg 268 (454)
T 3vi3_B 190 EQNCTTPFSYKNVLSLTNKGEVFNELVGKQR-ISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDG 268 (454)
T ss_dssp SSCCCCCCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTT
T ss_pred ccCCCCCcceeeeeecCCCHHHHHHHHhhcc-ccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCc
Confidence 11 111225677777677777777653 223445667777777777763 232 115689999888774 5888
Q ss_pred cccCCCCCCC-CCCCCCCCCcchHH--H--HHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCce-EEEeCCCCC
Q psy16627 271 ALQSRENPNQ-RSNDDPPHMNPATD--F--YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGC-IHHIPLYSG 344 (713)
Q Consensus 271 ~l~~~~~~~~-~s~~~~~~~~~a~~--f--Y~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~-v~~y~~f~~ 344 (713)
++-+--.|+. .-|-+...+..++. | ...|+..+.+++|.+ ||+.+.....+.+ .|+++-+|. +-.... +.
T Consensus 269 kL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y~--~L~~~ip~s~vg~Ls~-dS 344 (454)
T 3vi3_B 269 KLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVYK--ELKNLIPKSAVGTLSA-NS 344 (454)
T ss_dssp GGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHHH--HHHHHSTTEEEEEECT-TC
T ss_pred cccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHHH--HHHHhCCCceeeEccc-cc
Confidence 8765433332 11201111111111 1 457888888888755 8988877655442 333333333 333221 22
Q ss_pred CcchhHHHHHHHHHHhhccccccceEEEEEe-cCCceEEEEecCccccC--CC--ceeecCCCCCCeEEEEEEeec
Q psy16627 345 KNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TD--LLALPNVNPDAGYGIQISIDE 415 (713)
Q Consensus 345 ~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~-S~gl~v~~~~G~~~~~~--t~--~~~l~~i~~~~s~~~~f~~~~ 415 (713)
+ ..-.|.++-++.+ .-...|+... ++|++|+-. -.|..+. +. .-...++....++.|..++.-
T Consensus 345 s---Niv~LI~~aY~~i----~S~V~l~~~~~p~~l~v~y~-s~C~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~~ 412 (454)
T 3vi3_B 345 S---NVIQLIIDAYNSL----SSEVILENGKLSEGVTISYK-SYCKNGVNGTGENGRKCSNISIGDEVQFEISITS 412 (454)
T ss_dssp T---THHHHHHHHHHHH----HTCEEEEECCCCTTEEEEEE-EECGGGCEEEGGGGGEECCCCTTCEEEEEEEEEE
T ss_pred h---hHHHHHHHHHHHh----heEEEEecCCCCCceEEEEE-eecCCCCccCCccCCCCCCccCCCEEEEEEEEEe
Confidence 1 2344444444333 2334444433 445655421 1111110 00 023455666777777766653
No 50
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=89.39 E-value=1.6 Score=50.36 Aligned_cols=202 Identities=14% Similarity=0.147 Sum_probs=104.3
Q ss_pred CCCcEEEEEEEcchhHHhh-chHHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccC--
Q psy16627 124 PQPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF-- 200 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~s-g~l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f-- 200 (713)
..|-=.+|++|+|.+..+. .-++.+...|.+.|..+-.+. ||||.+|-...- +.... .....+..|-
T Consensus 102 ~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~--r~GfgsFvDk~~---~P~~~-----~~p~~~~~Pc~~ 171 (687)
T 3k6s_B 102 GYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESG--RIGFGSFVDKTV---LPFVN-----THPDKLRNPCPN 171 (687)
T ss_dssp CCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSC--EEEEEEECCCSS---TTSSC-----CSSTTTTCCCCS
T ss_pred CCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCc--EEeeEEeecccc---CCccc-----cCchhccCCCCC
Confidence 3467789999999764431 113334455666666666665 999999955431 11110 0111122111
Q ss_pred -----CC-CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHH--Hhhc-CCCCEEEEEecCCCC--CCC
Q psy16627 201 -----LP-SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ-PTGGRITIFQTCLPN--RGP 269 (713)
Q Consensus 201 -----~P-~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~-~~GGrI~~F~~g~pt--~Gp 269 (713)
.| ..-+..+++.+....+.+.+..+. .......|...+-+.++||+ .-++ ...-||+||++-.+- .|-
T Consensus 172 ~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~-isgn~D~PE~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~~H~agD 250 (687)
T 3k6s_B 172 KEKECQPPFAFRHVLKLTNNSNQFQTEVGKQL-ISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGD 250 (687)
T ss_dssp CCCCCCCCCSCEEEEEEESCSHHHHHHHHTSC-CCCCSSSSCCHHHHHHHHTTCHHHHCCCSSCCEEEEECSSCCCCTTG
T ss_pred CCCCcCCcccceeecccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhhcccccCCccceEEEEEECCCccccCCC
Confidence 11 111224567666566666666664 22334456666666666663 3333 126799999988775 477
Q ss_pred CcccCCCCCCC-CCCCCCCCCcchHHH----HHHHHHHHhhCCeEEEEEEecCCccCchhhccccc-CCCceEEEe
Q psy16627 270 GALQSRENPNQ-RSNDDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSK-FSSGCIHHI 339 (713)
Q Consensus 270 G~l~~~~~~~~-~s~~~~~~~~~a~~f----Y~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~-~TGG~v~~y 339 (713)
|+|...-.|+. .-|-+...+..+..+ -.+|+..+++++|. =||+......++. ..|++ .+|+.+-..
T Consensus 251 g~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~-~ifavt~~~~~~y--~~l~~~i~~s~v~~L 323 (687)
T 3k6s_B 251 GKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQ-PIFAVTSRMVKTY--EKLTEIIPKSAVGEL 323 (687)
T ss_dssp GGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCB-CCEEECGGGHHHH--HHHHHHSSSCCEEEC
T ss_pred ccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcCCe-EEEEEeccchhhH--HHHHhhcCCceeeee
Confidence 76644332222 011111111222211 24577777778884 3777766555443 23343 334444444
No 51
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=89.34 E-value=0.78 Score=48.59 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=38.8
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhH
Q psy16627 565 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 626 (713)
Q Consensus 565 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~ 626 (713)
-|+||.+..-... + + .-..++++.++|.++.+|+||++..||+|+|+..++.-
T Consensus 124 ~~rL~~v~g~~~~-----~---~-~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~e 176 (344)
T 2fh1_A 124 STRLFQVRANSAG-----A---T-RAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAE 176 (344)
T ss_dssp SSEEEEEEECTTC-----C---E-EEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHH
T ss_pred CceEEEEECCCCC-----c---e-EEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHH
Confidence 5799998731100 0 1 11234579999999999999999999999999887643
No 52
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=88.40 E-value=0.08 Score=41.02 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=17.6
Q ss_pred CCCCCCcccccCCCCCCCC
Q psy16627 79 NLPEIHEQFLYDRNTEMFG 97 (713)
Q Consensus 79 ~~n~~p~~~~~~~~~~~y~ 97 (713)
|.|.||+|.+.|++|.+|.
T Consensus 32 ~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 32 KLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp TEEECSSSCCEEECCSCCS
T ss_pred CEEEcccCCCcCCCCHHHh
Confidence 7899999999999999986
No 53
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=88.17 E-value=35 Score=37.59 Aligned_cols=274 Identities=16% Similarity=0.103 Sum_probs=136.3
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHH---HHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeee--ecCcCc
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTV---CEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMI--LTDIDD 198 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~---~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~v--v~dl~d 198 (713)
..|-=.+|++|+|.+..+ .++.+ ...|.+.|..+-.+. ||||.+|-...- +......|..+. -.+.+.
T Consensus 130 ~yPVDLyyLmDlS~SM~d--dl~~lk~lg~~L~~~l~~~t~~~--RiGfGsFvDK~v---~P~~~~~p~~l~~PC~~~~~ 202 (503)
T 3v4v_B 130 GYPVDLYYLMDLSYSMKD--DLERVRQLGHALLVRLQEVTHSV--RIGFGSFVDKTV---LPFVSTVPSKLRHPCPTRLE 202 (503)
T ss_dssp SCCEEEEEEEECSGGGHH--HHHHHHHSSHHHHHHHTTTCSCE--EEEEEEECCCSS---TTTSCCCHHHHHCCSSCSSS
T ss_pred CCceeEEEEEecCcchhh--HHHHHHHHHHHHHHHHHhhCcCc--EEeeeeeccccc---CCcccCCHHHhcCCCcCCCC
Confidence 347778999999986443 24444 455555666655555 999999944321 111100111100 000000
Q ss_pred cCC-CCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHH--Hhhc-CCCCEEEEEecCCCC--CCCCcc
Q psy16627 199 IFL-PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ-PTGGRITIFQTCLPN--RGPGAL 272 (713)
Q Consensus 199 ~f~-P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~-~~GGrI~~F~~g~pt--~GpG~l 272 (713)
.-. |..-+-.+++.+....+.+.+..+. ...+...|...+.+-+++|+ .-++ ....|+++|++-.+- .|-|++
T Consensus 203 ~c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~fH~agDgkL 281 (503)
T 3v4v_B 203 RCQSPFSFHHVLSLTGDAQAFEREVGRQS-VSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAGDGKL 281 (503)
T ss_dssp CCCCCCSEEEEEEEESCSHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTGGGT
T ss_pred CCCCCcceEEEEEecCCHHHHHHHHhhcC-ccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCCcCcCCCccc
Confidence 001 1111224567665556666666553 22344566677777777775 2332 125699999987775 577777
Q ss_pred cCCCCCCC-CCC-CCCCCCcchHHH----HHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCc
Q psy16627 273 QSRENPNQ-RSN-DDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKN 346 (713)
Q Consensus 273 ~~~~~~~~-~s~-~~~~~~~~a~~f----Y~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~ 346 (713)
.+--.++. .-| +....+..++.+ ...|+..+.+++|. =||+.+....++. ..|++.-.|..+--=+-+.+
T Consensus 282 aGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~-~IFAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~dSs- 357 (503)
T 3v4v_B 282 GGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQ-PIFAVTSAALPVY--QELSKLIPKSAVGELSEDSS- 357 (503)
T ss_dssp TTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEE-EEEEECSSSHHHH--HHHHTTSTTCEEEECCTTSC-
T ss_pred cceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCe-EEEEEcccchhHH--HHHHHhCCCceeeEccccch-
Confidence 55433332 112 111222222222 35677778888884 4899887766543 34444444433322122222
Q ss_pred chhHHHHHHHHHHhhccccccceEEEEEe-cCCceEEEE--ecCcc-ccCC--CceeecCCCCCCeEEEEEEeec
Q psy16627 347 MSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTF--HGNFF-VRST--DLLALPNVNPDAGYGIQISIDE 415 (713)
Q Consensus 347 ~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~-S~gl~v~~~--~G~~~-~~~t--~~~~l~~i~~~~s~~~~f~~~~ 415 (713)
..-.|.++-++.+ .-...|+... .++++|.-. -++.. ..+. ..-+..++....++.|..++.-
T Consensus 358 --Niv~LI~~aY~~i----~S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~~ 426 (503)
T 3v4v_B 358 --NVVQLIMDAYNSL----SSTVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQA 426 (503)
T ss_dssp --THHHHHHHHHHHH----HTCEEEECCCCCTTEEEEBCEECSSSCCCCCCCBSSEEECSCCTTCEEEEEEEEEE
T ss_pred --hHHHHHHHHHHHh----heEEEEecCCCCCceEEEEEEecCCCCccCcccccCCcccCcccCCEEEEEEEEEe
Confidence 2344444444333 2334444433 456666532 11110 0111 1124556777777777766653
No 54
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=82.94 E-value=2.8 Score=47.04 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=60.1
Q ss_pred CCCCcEEEEEEEcchhHHhhch-----HHHHHHHHHHHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcC
Q psy16627 123 PPQPAMYLFLLDVSQIAAQSGY-----LYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 197 (713)
Q Consensus 123 ~~~pp~~vFvID~s~~a~~sg~-----l~~~~~sl~~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~ 197 (713)
++.+-.++++||+|.+....+. +..+.-+..-++-.+..+. +||+|+|++.+...
T Consensus 359 ~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d--~v~lv~Fs~~~~~~------------------ 418 (535)
T 2nvo_A 359 QPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP--DALTMGFAEQFRPL------------------ 418 (535)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS--EEEEEEEBSSEEEC------------------
T ss_pred CCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC--ceEEEEECCcceEc------------------
Confidence 4567789999999987432021 1222222222222233344 89999998754221
Q ss_pred ccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCC
Q psy16627 198 DIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRG 268 (713)
Q Consensus 198 d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~G 268 (713)
|.+.+ ..+..+|+.|.... ..++.++.||..|..... ...+|+++++|.-+.|
T Consensus 419 ----~~~~~---------~~l~~~l~~l~~~~----~ggTdi~~~l~~a~~~~~-~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 419 ----GITPR---------DTLESAMQKAQSVS----FGGTDCAQPILWAAQERL-DVDTFVVYTDNETWAG 471 (535)
T ss_dssp ----CCCTT---------CCHHHHHHHTCCSS----BCCCCTTHHHHHHHHTTC-CCSEEEEEESSCCCCC
T ss_pred ----CCCcc---------hhHHHHHHHHhhCC----CCCccHHHHHHHHHHhcC-CCCEEEEEeCCCccCC
Confidence 11100 11334566664321 246678888887765543 4588999999876654
No 55
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=77.01 E-value=9.9 Score=37.13 Aligned_cols=115 Identities=15% Similarity=0.086 Sum_probs=62.5
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHH---HHhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCC
Q psy16627 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLL---NQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 202 (713)
Q Consensus 126 pp~~vFvID~s~~a~~sg~l~~~~~sl~---~~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P 202 (713)
|-=.+|++|+|.+... .++.+++.+. +.|..+..+ -|+||.+|-.. + .+.
T Consensus 3 pvDl~fl~D~S~SM~~--di~~lk~~~~~l~~~l~~~~~~--~r~Gfg~f~Dk--------~---~~~------------ 55 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQG--HLSNVQTLGSDLLKALNEISRS--GRIGFGSIVNM--------T---FQH------------ 55 (212)
T ss_dssp CEEEEEEEECCGGGTT--THHHHHHHHHHHHHHHHHHCSC--EEEEEEEESSS--------C---EEE------------
T ss_pred ceEEEEEEeCCCcchh--HHHHHHHHHHHHHHHHHhhCcC--ceEEEEEEEcC--------c---cee------------
Confidence 5568999999987443 3555555554 444444444 49999999554 0 010
Q ss_pred CCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHH--hh--cCCCCEEEEEecCCCCC--CCCcccC
Q psy16627 203 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LL--QPTGGRITIFQTCLPNR--GPGALQS 274 (713)
Q Consensus 203 ~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll--~~~GGrI~~F~~g~pt~--GpG~l~~ 274 (713)
.+++.+....+.+.++++. .......|...+.+-+++++. -+ .. ..|+++|++-.+-. |-|++..
T Consensus 56 -----~l~lT~d~~~F~~~v~~~~-vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~g 126 (212)
T 2iue_A 56 -----ILKLTADSSQFQRELRKQL-VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGT 126 (212)
T ss_dssp -----EEEEESCHHHHHHHHHTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGT
T ss_pred -----cCCcCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccc
Confidence 1122222233444555532 112234555666555555532 12 23 67999998877754 4455543
No 56
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=68.13 E-value=1.1 Score=48.53 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCCCChh
Q psy16627 593 LQLSAERLQATGTYLLNMPDLIIILVRHGTSPA 625 (713)
Q Consensus 593 l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~ 625 (713)
++++.++|.++.+||||+|..||+|+|+..+..
T Consensus 197 V~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~ 229 (398)
T 3fg7_A 197 VPARANFLNSNDVFVLKTQSCCYLWCGKGCSGD 229 (398)
T ss_dssp ---------------------------------
T ss_pred ecCCHHHccCCceEEEEeCCeEEEEeCCCCCHH
Confidence 558999999999999999999999999987654
No 57
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=64.45 E-value=16 Score=36.31 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=48.5
Q ss_pred CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecC-C---ccCchhhccc
Q psy16627 253 TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNS-Q---YVDLATLSGV 328 (713)
Q Consensus 253 ~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~-~---~~~l~~l~~l 328 (713)
..-.|++.+.|--|.|.. | .+.|..|.+.||.|..+.+.. + .-|..+|..+
T Consensus 9 ~~k~iillTDG~~~~g~~--------------------p-----~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~I 63 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPD--------------------P-----VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSI 63 (242)
T ss_dssp CEEEEEEEESSCCCSSSC--------------------H-----HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHH
T ss_pred CccEEEEEccCCCCCCCC--------------------H-----HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHH
Confidence 445677888887666631 1 467888999999999999843 3 4567899999
Q ss_pred ccCCCceEEEeCC
Q psy16627 329 SKFSSGCIHHIPL 341 (713)
Q Consensus 329 ~~~TGG~v~~y~~ 341 (713)
+..|||.-+....
T Consensus 64 A~~tGG~yf~a~~ 76 (242)
T 3rag_A 64 ADAGGGMCRIVQP 76 (242)
T ss_dssp HHHTTSCEEEECG
T ss_pred HHhcCCeEEEeeH
Confidence 9999999998743
No 58
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=40.15 E-value=37 Score=29.85 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEE
Q psy16627 145 LYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVH 177 (713)
Q Consensus 145 l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~ 177 (713)
-+.++++|+.-+..-|. .++++|-+++||..|-
T Consensus 112 Ae~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 112 AEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp HHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 45689999999877765 4678999999998763
No 59
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=34.77 E-value=19 Score=41.94 Aligned_cols=31 Identities=32% Similarity=0.391 Sum_probs=27.8
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy16627 48 KMWGYEPHDLLNTRDILPATKVEPPPIRLPQ 78 (713)
Q Consensus 48 ~~~~~~~~~~l~~~~~~p~~~~~p~~~~~~~ 78 (713)
.+||.|+|+.|++|+.+|+.+.+||.+.|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (751)
T 3eh1_A 1 QPESLRPVNLTQERNILPMTPVWAPVPNLNA 31 (751)
T ss_dssp CCGGGCEEETTTCCCCSCSSCCCCCCCCCCH
T ss_pred CCCCccchhhhccccCCCCCCCCCCCCCCCc
Confidence 3699999999999999999999998888863
Done!